Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 156 of 333
Found at i:51062128 original size:53 final size:54
Alignment explanation
Indices: 51062044--51062154 Score: 147
Period size: 53 Copynumber: 2.1 Consensus size: 54
51062034 TTAGTTTACC
* * *
51062044 AAATTACCAAAGTACCCCCGATTTATAAAATTACCT-AAATATCCTCGATTTGTA
1 AAATTACCAAAGTACCCCAGATTTACAAAATTA-CTGAAATACCCTCGATTTGTA
*
51062098 AAATTACCAAA-TACCCTCAG-TTTGCAAAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCAAAGTACCC-CAGATTTACAAAATTACTGAAATACCCTCGATTTGTA
51062151 AAAT
1 AAAT
51062155 GACTGAAATA
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
52 2 0.04
53 36 0.71
54 13 0.25
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAGTACCCCAGATTTACAAAATTACTGAAATACCCTCGATTTGTA
Found at i:51062215 original size:27 final size:27
Alignment explanation
Indices: 51062177--51062264 Score: 140
Period size: 27 Copynumber: 3.3 Consensus size: 27
51062167 CTTGTAAGAT
51062177 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
51062204 AGAATTATCATTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
*
51062231 AGAATTACCATTGTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
51062258 AAAATTA
1 AGAATTA
51062265 TTGAAATACC
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.38
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:51062274 original size:27 final size:27
Alignment explanation
Indices: 51062190--51062300 Score: 91
Period size: 27 Copynumber: 4.1 Consensus size: 27
51062180 ATTACCATTT
* **
51062190 TACCCTCGATTTACAGAATTATC-ATTT
1 TACCCTCGATTTACAAAATTATCGA-AA
* * * **
51062217 TACCCTCGATTTATAGAATTA-CCATTG
1 TACCCTCGATTTACAAAATTATCGA-AA
*
51062244 TACCCTCGATTTACAAAATTATTGAAA
1 TACCCTCGATTTACAAAATTATCGAAA
* *
51062271 TACCCTTGGTTTACAAAATTATCGAAA
1 TACCCTCGATTTACAAAATTATCGAAA
51062298 TAC
1 TAC
51062301 TCCTGTAGGG
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
26 1 0.01
27 69 0.97
28 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTATCGAAA
Found at i:51062291 original size:54 final size:54
Alignment explanation
Indices: 51062179--51062291 Score: 129
Period size: 54 Copynumber: 2.1 Consensus size: 54
51062169 TGTAAGATAG
* * ** * *
51062179 AATTACCATTTTACCCTCGATTTACAGAATTATCATTTTACCCTCGATTTATAG
1 AATTACCATTGTACCCTCGATTTACAAAATTATCATAATACCCTCGATTTACAA
* * *
51062233 AATTACCATTGTACCCTCGATTTACAAAATTATTGA-AATACCCTTGGTTTACAA
1 AATTACCATTGTACCCTCGATTTACAAAATTA-TCATAATACCCTCGATTTACAA
51062287 AATTA
1 AATTA
51062292 TCGAAATACT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 47 0.96
55 2 0.04
ACGTcount: A:0.34, C:0.20, G:0.08, T:0.38
Consensus pattern (54 bp):
AATTACCATTGTACCCTCGATTTACAAAATTATCATAATACCCTCGATTTACAA
Found at i:51062317 original size:27 final size:27
Alignment explanation
Indices: 51062287--51062491 Score: 284
Period size: 27 Copynumber: 7.6 Consensus size: 27
51062277 TGGTTTACAA
* *
51062287 AATTATCGAAATACTCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
51062314 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
51062341 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
51062368 TATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
51062395 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
51062422 AATTACCAAAATACCTCTATACGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
51062449 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
51062476 AATTATCGCAATACCC
1 AATTACCGAAATACCC
51062492 AATTACTGAA
Statistics
Matches: 157, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 157 1.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:51062345 original size:54 final size:54
Alignment explanation
Indices: 51062287--51062695 Score: 450
Period size: 54 Copynumber: 7.8 Consensus size: 54
51062277 TGGTTTACAA
* *
51062287 AATTATCGAAATACTCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
51062341 AATTATCGCAATACCCCTGTAGGGTAGTATTACCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * * *
51062395 AATTACCGAAATACCCCTATAGGGTAGAATTACCAAAATACCTCTATACGGTAG
1 AATTATCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
51062449 AATTA-CTGAAATACCCTTGTAGGGTAGAATTATCGCAATA-CCC----------
1 AATTATC-GAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
51062492 AATTA-CTGAAATACTCCTGTAGGGTAAAATTATCGAAATACCCCTGTAGGGTAG
1 AATTATC-GAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
*
51062546 AATTATCGCAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * ** *
51062600 AATTATCGTAATACCCCTATAGGGTCGAATTTTCGAAATACCCCAGTAGGGTAG
1 AATTATCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
51062654 AATTA-CTAAAATACCCCTATAGGGTGGAATTACCGAGATACC
1 AATTATC-GAAATACCCCTATAGGGTAGAATTACCGAAATACC
51062696 TTGTTGGGTA
Statistics
Matches: 304, Mismatches: 37, Indels: 28
0.82 0.10 0.08
Matches are distributed among these distances:
43 36 0.12
44 3 0.01
53 4 0.01
54 260 0.86
55 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (54 bp):
AATTATCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:51062345 original size:81 final size:81
Alignment explanation
Indices: 51062285--51062713 Score: 402
Period size: 81 Copynumber: 5.4 Consensus size: 81
51062275 CTTGGTTTAC
* * * *
51062285 AAAATTATCGAAATACTCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGC
1 AAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTATCGA
51062350 AATACCCCTGTAGGGT
66 AATACCCCTGTAGGGT
** * *
51062366 AGTATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCAA
1 AAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTATCGA
* * *
51062431 AATACCTCTATACGGT
66 AATACCCCTGTAGGGT
* * * * *
51062447 AGAATTACTGAAATACCCTTGTAGGGTAGAATTATCGCAATA-CCC----------AATTA-CTG
1 AAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTATC-G
*
51062500 AAATACTCCTGTAGGGT
65 AAATACCCCTGTAGGGT
* * * *
51062517 AAAATTATCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTATAGGGTAGAATTACCGA
1 AAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTATCGA
51062582 AATACCCCTGTAGGGT
66 AATACCCCTGTAGGGT
* * * * * **
51062598 AGAATTATCGTAATACCCCTATAGGGTCGAATTTTCGAAATACCCC-AGTAGGGTAGAATTA-CT
1 AAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTA-TAGGGTAGAATTATC-
* *
51062661 AAAATACCCCTATAGGGT
64 GAAATACCCCTGTAGGGT
** * * * *
51062679 GGAATTACCGAGATA-CCTTGTTGGGTAAAATTACC
1 AAAATTACCGAAATACCCCTGTAGGGTAGAATTACC
51062714 ATTTTGCCCC
Statistics
Matches: 288, Mismatches: 45, Indels: 31
0.79 0.12 0.09
Matches are distributed among these distances:
69 1 0.00
70 56 0.19
71 3 0.01
80 18 0.06
81 209 0.73
82 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.26
Consensus pattern (81 bp):
AAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTATCGA
AATACCCCTGTAGGGT
Found at i:51062513 original size:43 final size:43
Alignment explanation
Indices: 51062449--51062534 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
51062439 TATACGGTAG
* *
51062449 AATTACTGAAATACCCTTGTAGGGTAGAATTATCGCAATACCC
1 AATTACTGAAATACCCTTGTAGGGTAAAATTATCGAAATACCC
51062492 AATTACTGAAATACTCC-TGTAGGGTAAAATTATCGAAATACCC
1 AATTACTGAAATAC-CCTTGTAGGGTAAAATTATCGAAATACCC
51062535 CTGTAGGGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
43 38 0.95
44 2 0.05
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (43 bp):
AATTACTGAAATACCCTTGTAGGGTAAAATTATCGAAATACCC
Found at i:51062530 original size:27 final size:27
Alignment explanation
Indices: 51062499--51062695 Score: 243
Period size: 27 Copynumber: 7.3 Consensus size: 27
51062489 CCCAATTACT
* *
51062499 GAAATACTCCTGTAGGGTAAAATTATC
1 GAAATACCCCTGTAGGGTAGAATTATC
51062526 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTATC
* * *
51062553 GCAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTATC
51062580 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTATC
* * * *
51062607 GTAATACCCCTATAGGGTCGAATTTTC
1 GAAATACCCCTGTAGGGTAGAATTATC
*
51062634 GAAATACCCCAGTAGGGTAGAATTA-C
1 GAAATACCCCTGTAGGGTAGAATTATC
* * * *
51062660 TAAAATACCCCTATAGGGTGGAATTACC
1 -GAAATACCCCTGTAGGGTAGAATTATC
*
51062688 GAGATACC
1 GAAATACC
51062696 TTGTTGGGTA
Statistics
Matches: 145, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 143 0.99
28 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTATC
Found at i:51062561 original size:97 final size:97
Alignment explanation
Indices: 51062395--51062695 Score: 246
Period size: 97 Copynumber: 3.0 Consensus size: 97
51062385 TGTAGGGTAG
* *
51062395 AATTACCGAAATACCCCTATAGGGTAGAATTACCAAAATACCTCTATACGGTAGAATTACTGAAA
1 AATTACCGAAATACCCCTATAGGGTAAAATTACCAAAATACCCCTATACGGTAGAATTACTGAAA
* * * *
51062460 TACCCTTGTAGGGTAGAATTATCGCAATACCC
66 TACCCCTATAGGGTAGAATTACCGAAATACCC
* * * * * * * *
51062492 AATTACTGAAATACTCCTGTAGGGTAAAATTATCGAAATACCCCTGTAGGGTAGAATTA-TCGCA
1 AATTACCGAAATACCCCTATAGGGTAAAATTACCAAAATACCCCTATACGGTAGAATTACT-GAA
51062556 ATACCCCTATAGGGTAGAATTACCGAAATACCCC
65 ATACCCCTATAGGGTAGAATTACCGAAATA-CCC
* * ** ** * *
51062590 TGTAGGGTAGAATTATCGTAATACCCCTATAGGGTCGAATTTTCGAAATACCCC-AGTAGGGTAG
1 ----------AATTACCGAAATACCCCTATAGGGTAAAATTACCAAAATACCCCTA-TACGGTAG
* * *
51062654 AATTACTAAAATACCCCTATAGGGTGGAATTACCGAGATACC
55 AATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACC
51062696 TTGTTGGGTA
Statistics
Matches: 163, Mismatches: 27, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
96 1 0.01
97 78 0.48
98 3 0.02
107 2 0.01
108 78 0.48
109 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (97 bp):
AATTACCGAAATACCCCTATAGGGTAAAATTACCAAAATACCCCTATACGGTAGAATTACTGAAA
TACCCCTATAGGGTAGAATTACCGAAATACCC
Found at i:51062594 original size:124 final size:124
Alignment explanation
Indices: 51062369--51062615 Score: 377
Period size: 124 Copynumber: 2.0 Consensus size: 124
51062359 GTAGGGTAGT
*
51062369 ATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCAAAAT
1 ATTACCGAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTATAGGGTAGAATTACCAAAAT
* * *
51062434 ACCTCTATACGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTATCGCAATACCCA
66 ACCCCTATACGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCA
* * * * * **
51062493 ATTACTGAAATACTCCTGTAGGGTAAAATTATCGAAATACCCCTGTAGGGTAGAATTATCGCAAT
1 ATTACCGAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTATAGGGTAGAATTACCAAAAT
* *
51062558 ACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGTAATACCC
66 ACCCCTATACGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCC
51062616 CTATAGGGTC
Statistics
Matches: 110, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
124 110 1.00
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (124 bp):
ATTACCGAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTATAGGGTAGAATTACCAAAAT
ACCCCTATACGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCA
Found at i:51062615 original size:151 final size:151
Alignment explanation
Indices: 51062350--51062642 Score: 426
Period size: 151 Copynumber: 1.9 Consensus size: 151
51062340 GAATTATCGC
**
51062350 AATACCCCTGTAGGGTAGTATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTAT
1 AATACCCCTGTAGGGTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTAT
* * *
51062415 AGGGTAGAATTACCAAAATACCTCTATACGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATT
66 AGGGTAGAATTACCAAAATACCCCTATACGGTAGAATTACTGAAATACCCCTATAGGGTAGAATT
*
51062480 ATCGCAATACCCAATTACTGA
131 ATCGAAATACCCAATTACTGA
* * * *
51062501 AATACTCCTGTAGGGTAAAATTATCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTAT
1 AATACCCCTGTAGGGTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTAT
* * * * *
51062566 AGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTA-TCGTAATACCCCTATAGGGTCGAAT
66 AGGGTAGAATTACCAAAATACCCCTATACGGTAGAATTACT-GAAATACCCCTATAGGGTAGAAT
*
51062630 TTTCGAAATACCC
130 TATCGAAATACCC
51062643 CAGTAGGGTA
Statistics
Matches: 125, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
150 1 0.01
151 124 0.99
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.26
Consensus pattern (151 bp):
AATACCCCTGTAGGGTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTAT
AGGGTAGAATTACCAAAATACCCCTATACGGTAGAATTACTGAAATACCCCTATAGGGTAGAATT
ATCGAAATACCCAATTACTGA
Found at i:51063043 original size:20 final size:20
Alignment explanation
Indices: 51063003--51063043 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
51062993 TATGTGCTGT
*
51063003 TATTATGGGCTTCGTATCGA
1 TATTATGGGCTTCGTACCGA
* *
51063023 TATTGTGGGCTTCGTGCCGA
1 TATTATGGGCTTCGTACCGA
51063043 T
1 T
51063044 TATAGACCCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.15, C:0.17, G:0.29, T:0.39
Consensus pattern (20 bp):
TATTATGGGCTTCGTACCGA
Found at i:51063328 original size:27 final size:26
Alignment explanation
Indices: 51063298--51063383 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 26
51063288 CATTATCTAA
*
51063298 TTCTGGTGGCTATGCCACAAATATTTG
1 TTCTGGTGGCTCTGCCAC-AATATTTG
* *
51063325 TTCTGGTGGCTCTACCACAATATCTG
1 TTCTGGTGGCTCTGCCACAATATTTG
* *
51063351 CATT-TGGTGACTCTGTCACAATATTTG
1 --TTCTGGTGGCTCTGCCACAATATTTG
51063378 TTCTGG
1 TTCTGG
51063384 CAGCCATGCT
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
25 2 0.04
26 10 0.20
27 35 0.71
28 2 0.04
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (26 bp):
TTCTGGTGGCTCTGCCACAATATTTG
Found at i:51063334 original size:54 final size:53
Alignment explanation
Indices: 51063276--51063383 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 53
51063266 ATCCTGTTAA
* * * *
51063276 GTGGCTTTGCCACATTATCT-AATTCTGGTGGCTATGCCACAAATATTTGTTCTG
1 GTGGCTCTACCACAATATCTGAATT-TGGTGACTATGCCAC-AATATTTGTTCTG
* * *
51063330 GTGGCTCTACCACAATATCTGCATTTGGTGACTCTGTCACAATATTTGTTCTG
1 GTGGCTCTACCACAATATCTGAATTTGGTGACTATGCCACAATATTTGTTCTG
51063383 G
1 G
51063384 CAGCCATGCT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
53 14 0.30
54 29 0.63
55 3 0.07
ACGTcount: A:0.20, C:0.21, G:0.20, T:0.38
Consensus pattern (53 bp):
GTGGCTCTACCACAATATCTGAATTTGGTGACTATGCCACAATATTTGTTCTG
Found at i:51063538 original size:31 final size:30
Alignment explanation
Indices: 51063503--51063604 Score: 132
Period size: 31 Copynumber: 3.3 Consensus size: 30
51063493 TTGTATTCAC
51063503 ATTCTGATTTTGATTATGTTACCTGATACTG
1 ATTCTGATTTTGATT-TGTTACCTGATACTG
*
51063534 ATTCTGATTTTGATTTGGTTACTTGATACTG
1 ATTCTGATTTTGATTT-GTTACCTGATACTG
* * * *
51063565 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATT-TGTTACCTGATACTG
51063596 ATTCTGATT
1 ATTCTGATT
51063605 CTAGTTCTGA
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
30 1 0.02
31 61 0.97
32 1 0.02
ACGTcount: A:0.21, C:0.15, G:0.16, T:0.49
Consensus pattern (30 bp):
ATTCTGATTTTGATTTGTTACCTGATACTG
Found at i:51063542 original size:6 final size:6
Alignment explanation
Indices: 51063503--51063615 Score: 63
Period size: 6 Copynumber: 18.3 Consensus size: 6
51063493 TTGTATTCAC
* * * *
51063503 ATTCTG ATTTTG ATTATG -TTACCTG ATACTG ATTCTG ATTTTG ATT-TG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
51063551 GTTACTTG ATACTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
51063602 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
51063616 AATGTTTCTT
Statistics
Matches: 82, Mismatches: 14, Indels: 22
0.69 0.12 0.19
Matches are distributed among these distances:
5 8 0.10
6 63 0.77
7 6 0.07
8 5 0.06
ACGTcount: A:0.20, C:0.15, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:51067288 original size:50 final size:50
Alignment explanation
Indices: 51067170--51067445 Score: 280
Period size: 50 Copynumber: 5.6 Consensus size: 50
51067160 TTGTGAGAAG
* * * *** *
51067170 ACATGTGTAGTACTATGTGCAGGATACTATGTGTTTAAGATGGTTTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT--TGTTAGGTC
*
51067222 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTC
* * * * *
51067272 ACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGACAACT-TTA-ATC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC-A-GATTGTTAGGTC
* * **
51067323 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TA-A--AAT-GGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTC
* *
51067368 ACGTGTGTAGTACTAAGTGCAGCCTACTACGTGTACCAGATTGTT-GGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTC
51067417 ACATGTGTAGTACTAAGTGCAGGCTACTA
1 ACATGTGTAGTACTAAGTGCAGGCTACTA
51067446 TGCATACCAG
Statistics
Matches: 189, Mismatches: 26, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
45 37 0.20
46 2 0.01
47 1 0.01
48 1 0.01
49 32 0.17
50 40 0.21
51 36 0.19
52 38 0.20
53 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTC
Found at i:51067354 original size:101 final size:94
Alignment explanation
Indices: 51067220--51067445 Score: 265
Period size: 101 Copynumber: 2.3 Consensus size: 94
51067210 TGGTTTTAGG
**
51067220 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CA-A--AAT-GGTCACATGTGTAGTAC
* *
51067285 TAAGTGCAGGCTACTATGCGTACCCGACAACT-TTAA
61 TAAGTGCAGCCTACTACGCGTA-CC-A-AACTGTTAA
* *
51067321 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAAATGGTCACGTGTGTAGTACTAAGT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAAATGGTCACATGTGTAGTACTAAGT
* * * **
51067386 GCAGCCTACTACGTGTACCAGATTGTTGG
66 GCAGCCTACTACGCGTACCAAACTGTTAA
*
51067415 TCACATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
51067446 TGCATACCAG
Statistics
Matches: 112, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
93 2 0.02
94 33 0.29
95 2 0.02
96 35 0.31
97 1 0.01
99 1 0.01
100 1 0.01
101 37 0.33
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (94 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAAATGGTCACATGTGTAGTACTAAGT
GCAGCCTACTACGCGTACCAAACTGTTAA
Found at i:51069533 original size:30 final size:30
Alignment explanation
Indices: 51069499--51069605 Score: 108
Period size: 30 Copynumber: 3.6 Consensus size: 30
51069489 ATATGGATGA
* *
51069499 GACACGGCCGTA-TGTCTCAACCGTGTGAGG
1 GACACGGCC-TAGTGACACAACCGTGTGAGG
*
51069529 GACACGGCCTAGTGACACAAGCGTGTGAGG
1 GACACGGCCTAGTGACACAACCGTGTGAGG
* * * * * *
51069559 GATACGTCCTGGTGACACGAGCGTATGAGG
1 GACACGGCCTAGTGACACAACCGTGTGAGG
*
51069589 GACACGGCCTGGTGACA
1 GACACGGCCTAGTGACA
51069606 TGAGCGTGTA
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
29 2 0.03
30 64 0.97
ACGTcount: A:0.23, C:0.24, G:0.36, T:0.17
Consensus pattern (30 bp):
GACACGGCCTAGTGACACAACCGTGTGAGG
Found at i:51069611 original size:30 final size:30
Alignment explanation
Indices: 51069524--51069612 Score: 124
Period size: 30 Copynumber: 3.0 Consensus size: 30
51069514 CTCAACCGTG
* * *
51069524 TGAGGGACACGGCCTAGTGACACAAGCGTG
1 TGAGGGACACGGCCTGGTGACACGAGCGTA
* *
51069554 TGAGGGATACGTCCTGGTGACACGAGCGTA
1 TGAGGGACACGGCCTGGTGACACGAGCGTA
*
51069584 TGAGGGACACGGCCTGGTGACATGAGCGT
1 TGAGGGACACGGCCTGGTGACACGAGCGT
51069613 GTAGCCTGAC
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.24, C:0.21, G:0.38, T:0.17
Consensus pattern (30 bp):
TGAGGGACACGGCCTGGTGACACGAGCGTA
Found at i:51074832 original size:26 final size:26
Alignment explanation
Indices: 51074753--51074833 Score: 64
Period size: 25 Copynumber: 3.2 Consensus size: 26
51074743 TCAATCACGT
* *
51074753 GTGTAGTACTAAGTGAAGGCAACTAC
1 GTGTAGTACTAAGTGTAGGCTACTAC
* *
51074779 GTGTA-TA--AAATGGTTAGG-TCAC-AT
1 GTGTAGTACTAAGT-G-TAGGCT-ACTAC
51074803 GTGTAGTACTAAGTGTAGGCTACTAC
1 GTGTAGTACTAAGTGTAGGCTACTAC
51074829 GTGTA
1 GTGTA
51074834 CCAGATTTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 16
0.65 0.10 0.25
Matches are distributed among these distances:
23 3 0.07
24 7 0.17
25 15 0.37
26 13 0.32
27 3 0.07
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.30
Consensus pattern (26 bp):
GTGTAGTACTAAGTGTAGGCTACTAC
Found at i:51074835 original size:101 final size:98
Alignment explanation
Indices: 51074649--51074835 Score: 257
Period size: 101 Copynumber: 1.9 Consensus size: 98
51074639 TGGTTTTAGG
* * * *
51074649 TCACGTGTGTAGTAAGTGCAGGCAACTACGTGTACCAGATAGTTAGGTTACATGTGTAATACTAA
1 TCACGTGTGTAGTAAGTGAAGGCAACTACGTGTACAAAATAGTTAGGTCACATGTGTAATACTAA
*
51074714 GTGCAGGCTACTATGCGTACCCAACAACTTCAA
66 GTGCAGGCTACTACGCGTACCCAACAACTTCAA
* * *
51074747 TCACGTGTGTAGTACTAAGTGAAGGCAACTACGTGTATAAAATGGTTAGGTCACATGTGTAGTAC
1 TCACGTGTGTAG---TAAGTGAAGGCAACTACGTGTACAAAATAGTTAGGTCACATGTGTAATAC
* *
51074812 TAAGTGTAGGCTACTACGTGTACC
63 TAAGTGCAGGCTACTACGCGTACC
51074836 AGATTTTTGG
Statistics
Matches: 76, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
98 12 0.16
101 64 0.84
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (98 bp):
TCACGTGTGTAGTAAGTGAAGGCAACTACGTGTACAAAATAGTTAGGTCACATGTGTAATACTAA
GTGCAGGCTACTACGCGTACCCAACAACTTCAA
Found at i:51074872 original size:49 final size:50
Alignment explanation
Indices: 51074644--51074876 Score: 217
Period size: 50 Copynumber: 4.7 Consensus size: 50
51074634 TAAGATGGTT
* *
51074644 TTAGGTCAC--GTGT-GTAGTAAGTGCAGGCAACTACGTGTACCAGATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * * * *
51074691 TTAGGTTACATGTGTAATACTAAGTGCAGGCTACTATGCGTACCCA-ACAAC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGA-TAG
* * * * ** * *
51074742 TTCA-ATCACGTGTGTAGTACTAAGTGAAGGCAACTACGTGTATAAAATGG
1 TT-AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* *
51074792 TTAGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGAT-T
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* *
51074841 TTTGGTCACATGCGTAGTACTAAGTGCAGGCTACTA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
51074877 TTCATACCAG
Statistics
Matches: 146, Mismatches: 32, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
47 8 0.05
49 38 0.26
50 62 0.42
51 37 0.25
52 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (50 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
Found at i:51086377 original size:94 final size:90
Alignment explanation
Indices: 51086213--51086430 Score: 239
Period size: 94 Copynumber: 2.4 Consensus size: 90
51086203 ATATCTGTGC
*
51086213 CGATGCCATGTCCCAAACATGGTCTTACACT-GACACCTCTCGTAGCCGACGCATGTCCCAATCA
1 CGATG-CATGTCCCAAACAT-GTCTTACACTAG-CACCTCTCATAGCCGACGCATGTCCCAATCA
* *
51086277 TGTCTTACACTGGCT-TACGT-TTCGAGGT
63 TGTCTTACACTGGCTCT-CATAAT-GAGGT
* * *
51086305 TGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCA-ATGCCGATGCCATGTCCCAGA-
1 CGATGCATGTCCCAAACATGTCTTACACTAGCAC-C-TCTCATA-GCCGACG-CATGTCCCA-AT
*
51086368 CATGGTCTTACACTGGCTCTCATAATGTGGT
61 CAT-GTCTTACACTGGCTCTCATAATGAGGT
51086399 CGATGCATGTCCCAAACATGTCTTACACTAGC
1 CGATGCATGTCCCAAACATGTCTTACACTAGC
51086431 TCAGAATAAC
Statistics
Matches: 108, Mismatches: 9, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
90 13 0.12
91 16 0.15
92 14 0.13
93 12 0.11
94 51 0.47
95 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (90 bp):
CGATGCATGTCCCAAACATGTCTTACACTAGCACCTCTCATAGCCGACGCATGTCCCAATCATGT
CTTACACTGGCTCTCATAATGAGGT
Found at i:51086408 original size:47 final size:44
Alignment explanation
Indices: 51086210--51086432 Score: 157
Period size: 46 Copynumber: 4.8 Consensus size: 44
51086200 AGGATATCTG
* * * * *
51086210 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGACACCTCTC-G
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCGTCTCAA
* * *
51086255 TAGCCGACGCATGTCCCA-ATCATGTCTTACACTGGCTTACGTTTCGA
1 T-GCCGATGCATGTCCCAGA-CATGTCTTACACTGGC-T-CGTCTCAA
* ** *
51086302 GGTTGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAA
1 TGCCGATGCATGTCCCAGACATGTCTTACACT-G-GCTCGTCTCAA
51086348 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCAT-AA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCGTC-TCAA
* * *
51086393 TGTGGTCGATGCATGTCCCAAACATGTCTTACACTAGCTC
1 --T-GCCGATGCATGTCCCAGACATGTCTTACACTGGCTC
51086433 AGAATAACCC
Statistics
Matches: 144, Mismatches: 20, Indels: 27
0.75 0.10 0.14
Matches are distributed among these distances:
44 13 0.09
45 17 0.12
46 65 0.45
47 32 0.22
48 17 0.12
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.28
Consensus pattern (44 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCGTCTCAA
Found at i:51093991 original size:46 final size:44
Alignment explanation
Indices: 51093928--51094094 Score: 147
Period size: 46 Copynumber: 3.6 Consensus size: 44
51093918 AGTTGATACT
* * *
51093928 TGTCCCAGATATGTCTTACACTGGCTTACGTCTCACGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTGGC-T-CGTCTAAAGGCCGATGCA
* * * *
51093974 TGTCTCAGACATGTCTTACACTAGCACTCGTCTTAATGCCGATGCCA
1 TGTCCCAGACATGTCTTACACT-G-GCTCGTCTAAAGGCCGATG-CA
* * *
51094021 TGTCCCAGAAATAGTCTTACACTGGCTC-TCATAATGTGGCCAATGCA
1 TGTCCCAGACAT-GTCTTACACTGGCTCGTC-TAA--AGGCCGATGCA
*
51094068 TGTCCCAGACATGTCTTACACTAGCTC
1 TGTCCCAGACATGTCTTACACTGGCTC
51094095 ACAATAACCC
Statistics
Matches: 99, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
45 2 0.02
46 52 0.53
47 28 0.28
48 17 0.17
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTGGCTCGTCTAAAGGCCGATGCA
Found at i:51106272 original size:46 final size:45
Alignment explanation
Indices: 51106216--51106388 Score: 206
Period size: 46 Copynumber: 3.8 Consensus size: 45
51106206 TGGTTGAGCA
51106216 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAA-G
* ** * *
51106262 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAT-TTATG-GA-T-GCGAAG
*
51106309 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAA-G
* *
51106355 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCATTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTA
51106389 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 64 0.60
47 32 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAAG
Found at i:51106372 original size:93 final size:93
Alignment explanation
Indices: 51106213--51106383 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
51106203 GGATGGTTGA
* * *
51106213 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
51106278 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
51106306 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
51106371 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
51106384 ATTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:51123277 original size:27 final size:27
Alignment explanation
Indices: 51123229--51123386 Score: 173
Period size: 27 Copynumber: 5.9 Consensus size: 27
51123219 ACGAGACTGC
* *
51123229 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
51123256 TAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
51123282 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
51123309 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
51123336 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
51123363 TAGATAATTGTGGCATAGCCACCA
1 CAGAT-ATTGTGGCAGAGCCACCA
51123387 AGACGCTTCC
Statistics
Matches: 113, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
26 9 0.08
27 99 0.88
28 5 0.04
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:51123319 original size:54 final size:54
Alignment explanation
Indices: 51123247--51123386 Score: 237
Period size: 54 Copynumber: 2.6 Consensus size: 54
51123237 GTGACGAAGT
*
51123247 CACCAGATATAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-TAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* *
51123301 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATTAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
51123355 CACCAGATTAGATAATTGTGGCATAGCCACCA
1 CACCAGATTAGATAATTGTGGCATAGCCACCA
51123387 AGACGCTTCC
Statistics
Matches: 81, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 4 0.05
54 77 0.95
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (54 bp):
CACCAGATTAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:51125621 original size:46 final size:46
Alignment explanation
Indices: 51125554--51125729 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
51125544 TGTAACCCAC
*
51125554 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
* * * * **
51125600 CCATAAGTGAACTCGAACTCAACTCAACAAGTTCAGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG--T--TCGCAT
* *
51125650 CTCA-CA---AACTCGGACTCAACTCAACGAGCTCGCATGTTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
*
51125693 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
51125730 ACTCAAATAT
Statistics
Matches: 103, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 6 0.06
45 1 0.01
46 60 0.58
47 25 0.24
48 1 0.01
50 6 0.06
51 2 0.02
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
Found at i:51127442 original size:27 final size:27
Alignment explanation
Indices: 51127412--51127518 Score: 137
Period size: 27 Copynumber: 3.9 Consensus size: 27
51127402 GGCTGCCAGG
* *
51127412 ACAGATAATGTGACAGAGTCACCAGAT
1 ACAGATAATGTGGCAGAGCCACCAGAT
51127439 ACAGATAATCGTGGCAGAGCCACCAGA-
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
*
51127466 ACAGAAATATGTGGCAGAGCCACCAGAT
1 ACAGATA-ATGTGGCAGAGCCACCAGAT
*
51127494 -CAGATAATTGTGGCATAGCCACCAG
1 ACAGATAA-TGTGGCAGAGCCACCAG
51127519 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 5, Indels: 8
0.85 0.06 0.10
Matches are distributed among these distances:
26 1 0.01
27 53 0.75
28 17 0.24
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.16
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:51130039 original size:3 final size:3
Alignment explanation
Indices: 51130031--51130055 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
51130021 CTTTCCTGAA
51130031 CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT C
51130056 GGAGCAACCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:51132392 original size:27 final size:28
Alignment explanation
Indices: 51132269--51132393 Score: 159
Period size: 27 Copynumber: 4.6 Consensus size: 28
51132259 AAAGTACCAC
* *
51132269 CGATTTACATAATTA-TCGTTTTACCCT
1 CGATTTACAGAATTACTCATTTTACCCT
51132296 CGATTTACAGAATTA-TCATTTTACCCT
1 CGATTTACAGAATTACTCATTTTACCCT
*
51132323 CGATTTATAGAATTACT-ATTTTACCCT
1 CGATTTACAGAATTACTCATTTTACCCT
* * *
51132350 TGATTTATAGAATTACT-GTTTTACCCT
1 CGATTTACAGAATTACTCATTTTACCCT
*
51132377 CGATTTACAAAATTACT
1 CGATTTACAGAATTACT
51132394 AAAATACCAC
Statistics
Matches: 89, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
27 88 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.08, T:0.43
Consensus pattern (28 bp):
CGATTTACAGAATTACTCATTTTACCCT
Found at i:51132401 original size:27 final size:27
Alignment explanation
Indices: 51132317--51132703 Score: 178
Period size: 27 Copynumber: 14.3 Consensus size: 27
51132307 ATTATCATTT
* * ***
51132317 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAAAATTACTAAAA
* ****
51132344 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTTGATTTATAAAATTACTAAAA
* *
51132371 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
* * *
51132398 TACCAC-TGGTTTACAAAATTACCAAAA
1 TACC-CTTGATTTATAAAATTACTAAAA
* * * * *
51132425 TACCCTCGA-TCAGCAAAATTACCAATA
1 TACCCTTGATTTA-TAAAATTACTAAAA
* * * *
51132452 TACCC-TGGTCTGTAAAATTGCTAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
* * *
51132478 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
* * * *
51132505 TATCCCTAG-TTTGTAAAGTTACCAAAA
1 TA-CCCTTGATTTATAAAATTACTAAAA
* * * **
51132532 TACCAC-TGGTTTGTGAAATTACCGAAA
1 TACC-CTTGATTTATAAAATTACTAAAA
* * * *
51132559 TACCCTTAATTTGTAAAATTGCCAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
*
51132586 TACCCTTGATTTACAAAATTAC-AGAAA
1 TACCCTTGATTTATAAAATTACTA-AAA
*
51132613 TACCCTTGATTTTTTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAT-AAAATTACTA-AAA
* * *
51132642 TACCATT-AGTTTACAAAATTACTGAAA
1 TACCCTTGA-TTTATAAAATTACTAAAA
* * * * *
51132669 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
*
51132696 CACCCTTG
1 TACCCTTG
51132704 TAGGGTGAAA
Statistics
Matches: 286, Mismatches: 59, Indels: 30
0.76 0.16 0.08
Matches are distributed among these distances:
26 24 0.08
27 230 0.80
28 14 0.05
29 18 0.06
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.34
Consensus pattern (27 bp):
TACCCTTGATTTATAAAATTACTAAAA
Found at i:51132418 original size:54 final size:54
Alignment explanation
Indices: 51132290--51132419 Score: 129
Period size: 54 Copynumber: 2.4 Consensus size: 54
51132280 ATTATCGTTT
* * * * * ***
51132290 TACCCTCGATTTACAGAATTA-TCATTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTTGATTTACAAAATTACT-GTTTTACCCTCGATTTACAAAATTACTAAAA
* *
51132344 TACCCTTGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAA
*
51132398 TACCAC-TGGTTTACAAAATTAC
1 TACC-CTTGATTTACAAAATTAC
51132420 CAAAATACCC
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
54 61 0.97
55 2 0.03
ACGTcount: A:0.33, C:0.20, G:0.08, T:0.39
Consensus pattern (54 bp):
TACCCTTGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAA
Found at i:51132429 original size:54 final size:53
Alignment explanation
Indices: 51132371--51132618 Score: 214
Period size: 54 Copynumber: 4.6 Consensus size: 53
51132361 ATTACTGTTT
* * **
51132371 TACCCTCGATTTACAAAATTACTAAAATACCACTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAATACC-CTAGTTTGTAAAATTACCAAAA
* * * * * *
51132425 TACCCTCGA-TCAGCAAAATTACCAATATACCCTGGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTA-CAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAA
* * ** *
51132478 TACCCTTGGTTTGTAAAATTACCAAAATATCCCTAGTTTGTAAAGTTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAATA-CCCTAGTTTGTAAAATTACCAAAA
* *** * * *
51132532 TACCACT-GGTTTGTGAAATTACCGAAATACCCTTAATTTGTAAAATTGCCAAAA
1 TACC-CTCGATTTACAAAATTACCAAAATACCC-TAGTTTGTAAAATTACCAAAA
*
51132586 TACCCTTGATTTACAAAATTA-CAGAAATACCCT
1 TACCCTCGATTTACAAAATTACCA-AAATACCCT
51132619 TGATTTTTTA
Statistics
Matches: 158, Mismatches: 29, Indels: 15
0.78 0.14 0.07
Matches are distributed among these distances:
53 47 0.30
54 109 0.69
55 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (53 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAA
Found at i:51132483 original size:53 final size:54
Alignment explanation
Indices: 51132371--51132506 Score: 132
Period size: 53 Copynumber: 2.5 Consensus size: 54
51132361 ATTACTGTTT
* * *
51132371 TACCCTCGATTTACAAAATTACTAAAATACCACTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTCACAAAATTACCAAAATACCACTGGTCTACAAAATTACCAAAA
* ** * *
51132425 TACCCTCGA-TCAGCAAAATTACCAATATACC-CTGGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTCA-CAAAATTACCAAAATACCACTGGTCTACAAAATTACCAAAA
* * ***
51132478 TACCCTTGGTTTGTAAAATTACCAAAATA
1 TACCCTCGATTCACAAAATTACCAAAATA
51132507 TCCCTAGTTT
Statistics
Matches: 66, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
53 40 0.61
54 26 0.39
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (54 bp):
TACCCTCGATTCACAAAATTACCAAAATACCACTGGTCTACAAAATTACCAAAA
Found at i:51132496 original size:80 final size:80
Alignment explanation
Indices: 51132385--51132591 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
51132375 CTCGATTTAC
** *
51132385 AAAATTACTAAAATACCAC-TGGTTTACAAAATTACCAAAATACCCTCGATCAGCAAAATTACCA
1 AAAATTACTAAAATACC-CTTGGTTTGTAAAATTACCAAAATACCCTAG-TCAGCAAAATTACCA
*
51132449 ATATACC-CTGGTCTGT
64 AAATACCACTGGTCTGT
* ** * *
51132465 AAAATTGCTAAAATACCCTTGGTTTGTAAAATTACCAAAATATCCCTAGTTTGTAAAGTTACCAA
1 AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATA-CCCTAGTCAGCAAAATTACCAA
*
51132530 AATACCACTGGTTTGT
65 AATACCACTGGTCTGT
* ** ** *
51132546 GAAATTACCGAAATACCCTTAATTTGTAAAATTGCCAAAATACCCT
1 AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCT
51132592 TGATTTACAA
Statistics
Matches: 107, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
79 1 0.01
80 58 0.54
81 48 0.45
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (80 bp):
AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTAGTCAGCAAAATTACCAAA
ATACCACTGGTCTGT
Found at i:51132574 original size:81 final size:80
Alignment explanation
Indices: 51132412--51132618 Score: 213
Period size: 81 Copynumber: 2.6 Consensus size: 80
51132402 ACTGGTTTAC
* * * *
51132412 AAAATTACCAAAATACCCTCGATCAGCAAAATTACCAATATACCCTGGTCTGTAAAATTGCTAAA
1 AAAATTACCAAAATACCCTAGATCAGCAAAATTACCAAAATACCCTGGTCTGTAAAATTACCAAA
**
51132477 ATACCCTTGGTTTGT
66 ATACCCTTAATTTGT
** * * * * *
51132492 AAAATTACCAAAATATCCCTAG-TTTGTAAAGTTACCAAAATACCACTGGTTTGTGAAATTACCG
1 AAAATTACCAAAATA-CCCTAGATCAGCAAAATTACCAAAATACC-CTGGTCTGTAAAATTACCA
51132556 AAATACCCTTAATTTGT
64 AAATACCCTTAATTTGT
* * *
51132573 AAAATTGCCAAAATACCCTTGATTTA-CAAAATTA-CAGAAATACCCT
1 AAAATTACCAAAATACCCTAGA-TCAGCAAAATTACCA-AAATACCCT
51132619 TGATTTTTTA
Statistics
Matches: 104, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
80 41 0.39
81 61 0.59
82 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTAGATCAGCAAAATTACCAAAATACCCTGGTCTGTAAAATTACCAAA
ATACCCTTAATTTGT
Found at i:51132619 original size:54 final size:52
Alignment explanation
Indices: 51132371--51132703 Score: 206
Period size: 54 Copynumber: 6.2 Consensus size: 52
51132361 ATTACTGTTT
* * **
51132371 TACCCTCGATTTACAAAATTACTAAAATACCACTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTAC-AAAATACC-CTAGTTTGTAAAATTACCAAAA
* * * * * * *
51132425 TACCCTCGA-TCAGCAAAATTACCAATATACCCTGGTCTGTAAAATTGCTAAAA
1 TACCCTTGATTTA-CAAAATTA-CAAAATACCCTAGTTTGTAAAATTACCAAAA
* ** *
51132478 TACCCTTGGTTTGTAAAATTACCAAAATATCCCTAGTTTGTAAAGTTACCAAAA
1 TACCCTTGATTTACAAAATTA-CAAAATA-CCCTAGTTTGTAAAATTACCAAAA
* *** * * *
51132532 TACCAC-TGGTTTGTGAAATTACCGAAATACCCTTAATTTGTAAAATTGCCAAAA
1 TACC-CTTGATTTACAAAATTA-CAAAATACCC-TAGTTTGTAAAATTACCAAAA
* * *
51132586 TACCCTTGATTTACAAAATTACAGAAATACCCTTGATTTTTTAAAAATTA-TAGAAA
1 TACCCTTGATTTACAAAATTACA-AAATACCC-T-AGTTTGT-AAAATTACCA-AAA
* * * * *
51132642 TACCATT-AGTTTACAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGA-TTTACAAAATTAC-AAAATACCC-TAGTTTGTAAAATTACCAAAA
*
51132696 CACCCTTG
1 TACCCTTG
51132704 TAGGGTGAAA
Statistics
Matches: 222, Mismatches: 42, Indels: 29
0.76 0.14 0.10
Matches are distributed among these distances:
53 45 0.20
54 125 0.56
55 14 0.06
56 38 0.17
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (52 bp):
TACCCTTGATTTACAAAATTACAAAATACCCTAGTTTGTAAAATTACCAAAA
Found at i:51132798 original size:27 final size:27
Alignment explanation
Indices: 51132721--51132798 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
51132711 AAATGACTAA
* *
51132721 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
51132748 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
51132775 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
51132799 TAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:51133636 original size:25 final size:25
Alignment explanation
Indices: 51133608--51133701 Score: 138
Period size: 25 Copynumber: 3.8 Consensus size: 25
51133598 AGGAAGTGCT
51133608 AAAAGGG-TTATGCCCCAGTTTACCG
1 AAAAGGGCTT-TGCCCCAGTTTACCG
* *
51133633 AAAAGGGCTTTGCCCTAGTTTACAG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
51133658 AAAAGGGCTTTGCCCCAGTTTATC-
1 AAAAGGGCTTTGCCCCAGTTTACCG
51133682 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
51133702 ATTAAAAGAG
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
24 20 0.32
25 41 0.65
26 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:51133714 original size:24 final size:24
Alignment explanation
Indices: 51133608--51133714 Score: 121
Period size: 25 Copynumber: 4.4 Consensus size: 24
51133598 AGGAAGTGCT
*
51133608 AAAAGGG-TTATGCCCCAGTTTACC
1 AAAAGGGCTT-TGCCCCAGTTTATC
*
51133632 GAAAAGGGCTTTGCCCTAGTTTA-C
1 -AAAAGGGCTTTGCCCCAGTTTATC
51133656 AGAAAAGGGCTTTGCCCCAGTTTATC
1 --AAAAGGGCTTTGCCCCAGTTTATC
*
51133682 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
51133705 AAAAGAGGCT
1 AAAAG-GGCT
51133715 AGGCCTCCAG
Statistics
Matches: 75, Mismatches: 3, Indels: 9
0.86 0.03 0.10
Matches are distributed among these distances:
23 9 0.12
24 23 0.31
25 40 0.53
26 3 0.04
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:51136953 original size:40 final size:39
Alignment explanation
Indices: 51136900--51137044 Score: 218
Period size: 40 Copynumber: 3.6 Consensus size: 39
51136890 GCTACTCACT
* *
51136900 CAAATGCCTTCGGGACTTAGCCCGGTTCTAGTAACTCGCG
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
*
51136940 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
* *
51136980 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTAGTAACTCGCA
51137020 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
51137045 TTATCATCCG
Statistics
Matches: 97, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
40 95 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:51146523 original size:42 final size:42
Alignment explanation
Indices: 51146418--51146528 Score: 134
Period size: 42 Copynumber: 2.6 Consensus size: 42
51146408 TACTGTATCA
* *
51146418 AATGCCATATCCCAAATATGGTCTTATATGAAATATCATATC
1 AATGCCATATCCCAAATATGGTCTTATACGAAATATCATACC
* * * ** *
51146460 GATTCCATGTCCCTCACATGGTCTTATACGAAATCA-CATACC
1 AATGCCATATCCCAAATATGGTCTTATACGAAAT-ATCATACC
51146502 AATGCCATATCCCAAATATGGTCTTAT
1 AATGCCATATCCCAAATATGGTCTTAT
51146529 TTAGAATCTC
Statistics
Matches: 54, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
42 53 0.98
43 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (42 bp):
AATGCCATATCCCAAATATGGTCTTATACGAAATATCATACC
Found at i:51147610 original size:13 final size:13
Alignment explanation
Indices: 51147592--51147617 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51147582 TGCCCAAACG
51147592 TCAAAATTTTCAA
1 TCAAAATTTTCAA
51147605 TCAAAATTTTCAA
1 TCAAAATTTTCAA
51147618 AAAAATCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (13 bp):
TCAAAATTTTCAA
Found at i:51151086 original size:14 final size:15
Alignment explanation
Indices: 51151067--51151096 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
51151057 GTTTATTATA
51151067 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
51151081 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
51151096 T
1 T
51151097 CTAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:51151797 original size:182 final size:182
Alignment explanation
Indices: 51151490--51151851 Score: 697
Period size: 182 Copynumber: 2.0 Consensus size: 182
51151480 AATAGATGTG
51151490 TGATCCTTGTTTAATTAGTGTTAAAGCCCATGTTGAAATTTTGATTTCGGTTGAGGTATGTGCAT
1 TGATCCTTGTTTAATTAGTGTTAAAGCCCATGTTGAAATTTTGATTTCGGTTGAGGTATGTGCAT
51151555 TCGGTCATAGAAGAAATTGAATAAAATTTGGTTGTTTGTCTTAATTAAGGAGAGAAATTTATGAA
66 TCGGTCATAGAAGAAATTGAATAAAATTTGGTTGTTTGTCTTAATTAAGGAGAGAAATTTATGAA
* *
51151620 TCTATAATTGTAAGTGACTAAATGGTAAAATAATGAGTTGGAGGGACTTGTA
131 TCTATAATTATAAGTGACTAAATGGCAAAATAATGAGTTGGAGGGACTTGTA
51151672 TGATCCTTGTTTAATTAGTGTTAAAGCCCATGTTGAAATTTTGATTTCGGTTGAGGTATGTGCAT
1 TGATCCTTGTTTAATTAGTGTTAAAGCCCATGTTGAAATTTTGATTTCGGTTGAGGTATGTGCAT
*
51151737 TCGGTCATAGAGGAAATTGAATAAAATTTGGTTGTTTGTCTTAATTAAGGAGAGAAATTTATGAA
66 TCGGTCATAGAAGAAATTGAATAAAATTTGGTTGTTTGTCTTAATTAAGGAGAGAAATTTATGAA
51151802 TCTATAATTATAAGTGACTAAATGGCAAAATAATGAGTTGGAGGGACTTG
131 TCTATAATTATAAGTGACTAAATGGCAAAATAATGAGTTGGAGGGACTTG
51151852 AATGTAAAGA
Statistics
Matches: 177, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
182 177 1.00
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.37
Consensus pattern (182 bp):
TGATCCTTGTTTAATTAGTGTTAAAGCCCATGTTGAAATTTTGATTTCGGTTGAGGTATGTGCAT
TCGGTCATAGAAGAAATTGAATAAAATTTGGTTGTTTGTCTTAATTAAGGAGAGAAATTTATGAA
TCTATAATTATAAGTGACTAAATGGCAAAATAATGAGTTGGAGGGACTTGTA
Found at i:51157550 original size:14 final size:15
Alignment explanation
Indices: 51157531--51157560 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
51157521 ATTTATTATA
51157531 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
51157545 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
51157560 T
1 T
51157561 CTAAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:51160146 original size:93 final size:93
Alignment explanation
Indices: 51160031--51160202 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
51160021 CGCCCATAAG
* *
51160031 CGAACTCAGACTCAACTCAACGAGCTC-GAGCGTTCACATCCGTAAGTGAACTCGGACTCAACTC
1 CGAACTCAGACTCAACTCAACGAGCTCGGA-CATTCACATCCATAAGTGAACTCGGACTCAACTC
51160095 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* * *
51160124 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
51160189 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
51160203 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 71 0.97
94 2 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:51160198 original size:46 final size:47
Alignment explanation
Indices: 51160024--51160199 Score: 202
Period size: 46 Copynumber: 3.8 Consensus size: 47
51160014 TGTAACCCGC
* * *
51160024 CCATAAGCGAACTCAGACTCAACTCAACGAGCTC-GAGCGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCACAT
* *
51160070 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTCACAT
* *
51160120 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCACAT
*
51160163 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
51160200 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 59 0.53
47 31 0.28
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCACAT
Found at i:51160654 original size:30 final size:30
Alignment explanation
Indices: 51160620--51160679 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
51160610 ATTTAATACG
51160620 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
51160650 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
51160680 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:51165125 original size:44 final size:43
Alignment explanation
Indices: 51165047--51165176 Score: 122
Period size: 43 Copynumber: 3.0 Consensus size: 43
51165037 CAGAGGATTC
* * * *
51165047 CAATAGGTGATTTCGTGTAAGACCACGTCCGGGACGTTGGCAT
1 CAATAGTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
* * **
51165090 CGATA-TATGATT-TATGTGGAAGACC-CTGTCTGGGACAATGGCAT
1 CAATAGT-TGATTACATGT--AAGACCAC-GTCTGGGACGTTGGCAT
*
51165134 CAATAGTTGGTTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 CAATAGTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
51165177 TGTATGAGCT
Statistics
Matches: 68, Mismatches: 12, Indels: 14
0.72 0.13 0.15
Matches are distributed among these distances:
42 3 0.04
43 31 0.46
44 29 0.43
45 5 0.07
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.28
Consensus pattern (43 bp):
CAATAGTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:51165175 original size:43 final size:42
Alignment explanation
Indices: 51165062--51165176 Score: 117
Period size: 44 Copynumber: 2.7 Consensus size: 42
51165052 GGTGATTTCG
* * *
51165062 TGTAAGACCACGTCCGGGACGTTGGCATCGATATATGATTTA
1 TGTAAGACCACGTCTGGGACGTTGGCATCAATATATGATTCA
** *
51165104 TGTGGAAGACC-CTGTCTGGGACAATGGCATCAATAGT-TGGTTACA
1 TGT--AAGACCAC-GTCTGGGACGTTGGCATCAATA-TATGATT-CA
51165149 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
51165177 TGTATGAGCT
Statistics
Matches: 59, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
42 3 0.05
43 22 0.37
44 29 0.49
45 5 0.08
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCAATATATGATTCA
Found at i:51171575 original size:7 final size:7
Alignment explanation
Indices: 51171563--51171589 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
51171553 CACGAGGTTA
51171563 AAGAAAT
1 AAGAAAT
51171570 AAGAAAT
1 AAGAAAT
51171577 AAGAAAT
1 AAGAAAT
51171584 AAGAAA
1 AAGAAA
51171590 ATCTCTTTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.11
Consensus pattern (7 bp):
AAGAAAT
Found at i:51173799 original size:49 final size:49
Alignment explanation
Indices: 51173746--51173844 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
51173736 GGAAATTGTT
*
51173746 TATAATGTGCTTGTGTATTCGGTTTATGTGATGAAAATATATGTGATGA
1 TATAATGTGCTTGTGTATTCGGTTTATGCGATGAAAATATATGTGATGA
51173795 TATAATGTGCTTGTGTATTCGGTTTATGCGATGAAAATATATGTGATGA
1 TATAATGTGCTTGTGTATTCGGTTTATGCGATGAAAATATATGTGATGA
51173844 T
1 T
51173845 TATCATCAAC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.28, C:0.05, G:0.24, T:0.42
Consensus pattern (49 bp):
TATAATGTGCTTGTGTATTCGGTTTATGCGATGAAAATATATGTGATGA
Found at i:51174184 original size:24 final size:24
Alignment explanation
Indices: 51174157--51174206 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
51174147 CAAGAGGGTT
51174157 TAAATTAATGTGGACATATGCACA
1 TAAATTAATGTGGACATATGCACA
*
51174181 TAAATTAATGTGGACATATGCGCA
1 TAAATTAATGTGGACATATGCACA
51174205 TA
1 TA
51174207 GTTTCGTGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.30
Consensus pattern (24 bp):
TAAATTAATGTGGACATATGCACA
Found at i:51178890 original size:15 final size:15
Alignment explanation
Indices: 51178866--51178915 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
51178856 ATCAATTATG
* *
51178866 ATTAAGGTTTGGTTA
1 ATTAAAGTTTGATTA
*
51178881 ATTAAAGTTTAATTA
1 ATTAAAGTTTGATTA
*
51178896 ATT-AATTTTGATTA
1 ATTAAAGTTTGATTA
51178910 ATTAAA
1 ATTAAA
51178916 TTTTAAATCA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
14 12 0.41
15 17 0.59
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (15 bp):
ATTAAAGTTTGATTA
Found at i:51178917 original size:15 final size:15
Alignment explanation
Indices: 51178873--51178919 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
51178863 ATGATTAAGG
* *
51178873 TTTGGTTAATTAAAG
1 TTTGATTAATTAAAT
*
51178888 TTTAATTAATT-AAT
1 TTTGATTAATTAAAT
51178902 TTTGATTAATTAAAT
1 TTTGATTAATTAAAT
51178917 TTT
1 TTT
51178920 AAATCAAGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 12 0.44
15 15 0.56
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (15 bp):
TTTGATTAATTAAAT
Found at i:51179940 original size:9 final size:9
Alignment explanation
Indices: 51179926--51179952 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
51179916 GATTCATTAC
51179926 CAAAACATT
1 CAAAACATT
51179935 CAAAACATT
1 CAAAACATT
51179944 CAAAACATT
1 CAAAACATT
51179953 TTCAATTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (9 bp):
CAAAACATT
Found at i:51185455 original size:39 final size:40
Alignment explanation
Indices: 51185341--51185525 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
51185331 GCTACTCGTT
* *
51185341 CAAATGCCTTCGGGACATAGCCTGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
51185381 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
51185421 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
** * * * * *
51185460 CAAATGCCTTC-GGATCTTAGTTCAGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
51185501 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51185526 CATCATTCGA
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.28
40 72 0.60
41 13 0.11
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:51192142 original size:56 final size:56
Alignment explanation
Indices: 51192056--51192175 Score: 240
Period size: 56 Copynumber: 2.1 Consensus size: 56
51192046 ACAAGGGATG
51192056 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
51192112 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
51192168 ATGGGCAA
1 ATGGGCAA
51192176 TAAACTAATA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 64 1.00
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:51193173 original size:79 final size:81
Alignment explanation
Indices: 51193037--51193219 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
51193027 TCGAATGATG
* *
51193037 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
51193101 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * *
51193116 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGATTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
51193178 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
51193196 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
51193220 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:51193228 original size:40 final size:39
Alignment explanation
Indices: 51193038--51193221 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
51193028 CGAATGATGT
* * * *
51193038 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
51193078 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
51193118 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
**
51193156 TCCGGATTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
51193197 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
51193222 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 33 0.27
40 79 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51193252 original size:79 final size:79
Alignment explanation
Indices: 51193076--51193254 Score: 204
Period size: 79 Copynumber: 2.3 Consensus size: 79
51193066 AAGTGACCAT
* *
51193076 ATCCGGACTAAGA-TCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATT
1 ATCCGGATTAA-ATTCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATT
**
51193140 GGTGCGAGTTACTAA
65 GGAACGAGTTACTAA
* * * *
51193155 ATCCGGATTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 ATCCGGATTAAATTCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
* *
51193219 TTGAACGAG-TAGCTAT
64 TGGAACGAGTTA-CTAA
51193235 ATCCGG-TTAAATTCCGAAGG
1 ATCCGGATTAAATTCCGAAGG
51193255 TATGTGATTT
Statistics
Matches: 84, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
78 2 0.02
79 56 0.67
80 26 0.31
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
ATCCGGATTAAATTCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTG
GAACGAGTTACTAA
Found at i:51199776 original size:56 final size:56
Alignment explanation
Indices: 51199690--51199809 Score: 240
Period size: 56 Copynumber: 2.1 Consensus size: 56
51199680 ACAAGGGATG
51199690 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
51199746 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
51199802 ATGGGCAA
1 ATGGGCAA
51199810 TAAACTAATA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 64 1.00
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:51201996 original size:28 final size:28
Alignment explanation
Indices: 51201958--51202031 Score: 98
Period size: 28 Copynumber: 2.6 Consensus size: 28
51201948 GTTCAAATTG
*
51201958 TATAGCACTAAGTGTGCGAGGTT-GATTA
1 TATAGCACTAAGTGTGCGA-GTTCGACTA
*
51201986 TATAGCACTAACTGTGCGAGTTCGACTA
1 TATAGCACTAAGTGTGCGAGTTCGACTA
51202014 T-TAAGCACTAAGTGTGCG
1 TAT-AGCACTAAGTGTGCG
51202032 GGCTTATTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
27 4 0.10
28 37 0.90
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (28 bp):
TATAGCACTAAGTGTGCGAGTTCGACTA
Found at i:51204014 original size:79 final size:81
Alignment explanation
Indices: 51203878--51204060 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
51203868 TCGAATGATG
* *
51203878 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
51203942 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
51203957 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
51204019 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
51204037 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
51204061 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:51204076 original size:40 final size:40
Alignment explanation
Indices: 51203879--51204062 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
51203869 CGAATGATGT
* * * *
51203879 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
51203919 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
51203959 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
51203997 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
51204038 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
51204063 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:51204084 original size:79 final size:79
Alignment explanation
Indices: 51203931--51204095 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
51203921 GGACTAAGAT
* **
51203931 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
51203996 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
51204010 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
51204073 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
51204089 CCGAAGG
1 CCGAAGG
51204096 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:51207140 original size:40 final size:40
Alignment explanation
Indices: 51207091--51207239 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
51207081 CAGAATTTAA
** *
51207091 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACATAAC
* *
51207131 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAAC
* * * *
51207171 CCGGATTTAGTAACTCGCACCAATGCCTTC-GG-C-TTAG
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAAC
51207208 CCGGA-ATTAGTAACTCGCACAAATGCCTTCGG
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGG
51207240 ATCTTAGTTC
Statistics
Matches: 94, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
37 29 0.31
38 2 0.02
39 3 0.03
40 60 0.64
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAAC
Found at i:51207284 original size:77 final size:77
Alignment explanation
Indices: 51207138--51207286 Score: 178
Period size: 77 Copynumber: 1.9 Consensus size: 77
51207128 AGCCCGGTTA
* * *
51207138 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGATATAGTAACTAGCACCAATGCCTTCGG
51207203 CTTAGCCGGAAT
66 CTTAGCCGGAAT
*** * *
51207215 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTTCAGATATGGTCACTTAGCA-CAA-GCCTTC
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCAGATATAGTAAC-TAGCACCAATGCCTTC
51207277 GGACTTAGCC
64 GG-CTTAGCC
51207287 CGGACATCAT
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
76 11 0.18
77 46 0.75
78 4 0.07
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (77 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGATATAGTAACTAGCACCAATGCCTTCGG
CTTAGCCGGAAT
Found at i:51208902 original size:27 final size:27
Alignment explanation
Indices: 51208872--51209049 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
51208862 ATATTGAGTC
* * * *
51208872 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
51208899 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51208926 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
51208954 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
51208981 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
51209008 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51209035 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51209050 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:51209011 original size:82 final size:81
Alignment explanation
Indices: 51208893--51209048 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51208883 TGCTATATAA
* *
51208893 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
51208958 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
51208975 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
51209039 CACTTAGTGC
65 CACTTAGTGC
51209049 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:51209615 original size:13 final size:13
Alignment explanation
Indices: 51209597--51209621 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51209587 TACTAAATTT
51209597 TCATGGATTCAAG
1 TCATGGATTCAAG
51209610 TCATGGATTCAA
1 TCATGGATTCAA
51209622 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:51216791 original size:27 final size:27
Alignment explanation
Indices: 51216761--51216937 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
51216751 ATATTGAGCC
* *
51216761 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
51216788 CGCACACTTAGTGCTACGTAATCAA-T
1 CGCACACTTAGTGCTACATAATCAACT
*
51216814 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
51216842 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
51216869 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
51216896 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
51216923 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51216938 GTACAATTTA
Statistics
Matches: 129, Mismatches: 16, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
26 22 0.17
27 84 0.65
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:51216852 original size:54 final size:53
Alignment explanation
Indices: 51216761--51216937 Score: 203
Period size: 54 Copynumber: 3.3 Consensus size: 53
51216751 ATATTGAGCC
* * * * *
51216761 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAT
* ** *
51216814 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCAACATAGTCAA-T
* **
51216869 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCAACATAGTC-AAT
51216923 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51216938 GTACAATTTA
Statistics
Matches: 105, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
53 20 0.19
54 62 0.59
55 23 0.22
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (53 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAT
Found at i:51216926 original size:81 final size:81
Alignment explanation
Indices: 51216782--51216936 Score: 224
Period size: 81 Copynumber: 1.9 Consensus size: 81
51216772 TGCTATATAA
* *
51216782 TCAACTCGCACACTTAGTGCTACGTAATCAATCGCACACTTAGTGCTACATAGTCAAACTCGCAC
1 TCAACTCGCACACTTAGTGCTACATAATCAATCGCACACTTAGTGCAACATAGTCAAACTCGCAC
51216847 ACTTAGTGCCGCATGG
66 ACTTAGTGCCGCATGG
* * * *
51216863 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAA-TCGC
1 TCAACTCGCACACTTAGTGCTA-CATAATCA-ATCGCACACTTAGTGCAACATAGTCAAACTCGC
51216926 ACACTTAGTGC
64 ACACTTAGTGC
51216937 TGTACAATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 1 0.02
81 40 0.61
82 25 0.38
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAATCGCACACTTAGTGCAACATAGTCAAACTCGCAC
ACTTAGTGCCGCATGG
Found at i:51221972 original size:46 final size:46
Alignment explanation
Indices: 51221795--51221972 Score: 184
Period size: 46 Copynumber: 3.8 Consensus size: 46
51221785 TGTAACCCGC
* * * * *
51221795 CCATAAGCGAACTCGAACTCAAGTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
51221841 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--TTC-CTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGC-A--T
* * *
51221887 ACATTTCA-CAAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
51221934 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGACG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACG
51221973 CCCAAATATC
Statistics
Matches: 109, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 64 0.59
47 31 0.28
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:51223730 original size:16 final size:16
Alignment explanation
Indices: 51223693--51223743 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
51223683 ACGCAGAATT
*
51223693 ATAACCAAAAT-AAAC
1 ATAACCAAATTCAAAC
* *
51223708 TTAAACCATATTCAAAC
1 AT-AACCAAATTCAAAC
*
51223725 ATAACCAAATTCAAGC
1 ATAACCAAATTCAAAC
51223741 ATA
1 ATA
51223744 GAAGTTAAGC
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
15 1 0.04
16 22 0.79
17 5 0.18
ACGTcount: A:0.55, C:0.22, G:0.02, T:0.22
Consensus pattern (16 bp):
ATAACCAAATTCAAAC
Found at i:51224087 original size:19 final size:19
Alignment explanation
Indices: 51224063--51224101 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
51224053 TTAAACCTTA
*
51224063 ATCATATGATTTCACGTAT
1 ATCATATGATTTCACATAT
*
51224082 ATCATATGCTTTCACATAT
1 ATCATATGATTTCACATAT
51224101 A
1 A
51224102 CACTTATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (19 bp):
ATCATATGATTTCACATAT
Found at i:51228520 original size:50 final size:49
Alignment explanation
Indices: 51228455--51228852 Score: 343
Period size: 50 Copynumber: 7.9 Consensus size: 49
51228445 TAAGATAGTT
* *
51228455 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCAACTACGTGTACCAGATTG
1 TTAGGTC-CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * *
51228505 TTAGGTTCCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAG
1 TTAGG-TCCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * *
51228555 CTTCGAT-CATGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCA-AATG
1 -TTAGGTCCA--TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * *
51228605 TTAGGTCAAGTGAGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTG
1 TTAGGTCCA-TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * * *
51228655 ATAGGTTGCATGTGTAGTACTAAGTACAGGCTACTATGTGTACCCG-TTAAC
1 TTAGG-TCCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--G
* * ** * * *
51228706 TTCGATCTTGTGTGTAGTAATAAGTGCAGGCTACTACGTGTATCAGATGG
1 TTAGGTC-CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * *
51228756 ATAAGTCACGTGTATAGTACTAAGTGTAGGCTACTACGTGTACCAGATTG
1 TTAGGTC-CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * *
51228806 ATAGGTCACATGTGTAGTACTAAGTGCATGCTACTATGCGTACCAGA
1 TTAGGTC-CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
51228853 GAGCTTCGGT
Statistics
Matches: 277, Mismatches: 60, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
49 40 0.14
50 164 0.59
51 72 0.26
52 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (49 bp):
TTAGGTCCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
Found at i:51228687 original size:150 final size:151
Alignment explanation
Indices: 51228413--51228860 Score: 596
Period size: 150 Copynumber: 3.0 Consensus size: 151
51228403 TGAGAACACA
* ** * *
51228413 TGTGTAGTACTATGTATAGGCTACTATGTGT-TTAAGATAGTTTTAGGTCACGTGTGTAGTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAA-ATAG--TTAGGTCACGTGAGTAGTACTA
* * *
51228477 AGTGCAGGCAACTACGTGTACCAGATTGTTAGGTTCCATGTGTAGTACTAAGTGCAGGCTACTAT
63 AGTGCAGGCTACTACGTGTACCAGATTGATAGGTTACATGTGTAGTACTAAGTGCAGGCTACTAT
51228542 GCGTACCCGATAGCTTCGATCATG
128 GCGTACCCGATAGCTTCGATCATG
*
51228566 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAAAT-GTTAGGTCAAGTGAGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAAATAGTTAGGTCACGTGAGTAGTACTAAGT
* * * *
51228630 GCAGGCTACTACGTGTACCGGATTGATAGGTTGCATGTGTAGTACTAAGTACAGGCTACTATGTG
66 GCAGGCTACTACGTGTACCAGATTGATAGGTTACATGTGTAGTACTAAGTGCAGGCTACTATGCG
* * *
51228695 TACCCGTTAACTTCGATCTTG
131 TACCCGATAGCTTCGATCATG
* * * * * *
51228716 TGTGTAGTAATAAGTGCAGGCTACTACGTGTATCAGATGGATAAGTCACGTGTA-TAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAAATAGTTAGGTCACGTG-AGTAGTACTAAG
* * *
51228780 TGTAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTGCATGCTACTATGC
65 TGCAGGCTACTACGTGTACCAGATTGATAGGTTACATGTGTAGTACTAAGTGCAGGCTACTATGC
* *
51228845 GTACCAGAGAGCTTCG
130 GTACCCGATAGCTTCG
51228861 GTTACAAGGG
Statistics
Matches: 260, Mismatches: 32, Indels: 8
0.87 0.11 0.03
Matches are distributed among these distances:
150 135 0.52
151 90 0.35
152 2 0.01
153 30 0.12
154 3 0.01
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (151 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAAATAGTTAGGTCACGTGAGTAGTACTAAGT
GCAGGCTACTACGTGTACCAGATTGATAGGTTACATGTGTAGTACTAAGTGCAGGCTACTATGCG
TACCCGATAGCTTCGATCATG
Found at i:51228743 original size:101 final size:101
Alignment explanation
Indices: 51228618--51228799 Score: 256
Period size: 101 Copynumber: 1.8 Consensus size: 101
51228608 GGTCAAGTGA
* * * * ** *
51228618 GTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGATAGGTTGCATGTGTAGTACTAAGTACA
1 GTAGTAATAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTATAGTACTAAGTACA
*
51228683 GGCTACTATGTGTACCCGTTAACTTCGATCTTGTGT
66 GGCTACTACGTGTACCCGTTAACTTCGATCTTGTGT
* * **
51228719 GTAGTAATAAGTGCAGGCTACTACGTGTATCAGATGGATAAGTCACGTGTATAGTACTAAGTGTA
1 GTAGTAATAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTATAGTACTAAGTACA
51228784 GGCTACTACGTGTACC
66 GGCTACTACGTGTACC
51228800 AGATTGATAG
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
101 69 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (101 bp):
GTAGTAATAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTATAGTACTAAGTACA
GGCTACTACGTGTACCCGTTAACTTCGATCTTGTGT
Found at i:51229615 original size:180 final size:180
Alignment explanation
Indices: 51229383--51229719 Score: 514
Period size: 180 Copynumber: 1.9 Consensus size: 180
51229373 CCGAGATCTT
*
51229383 TACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGAAACTGTCAGACAGTGAAACAGGGGT-A
1 TACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGAAACTATCAGACAGTGAAACAGGGGTAA
* * *
51229447 TCTTTAATGAATAAACTGTACAAATTGGCTAAACCAAAAATTCTAAAAATTTTATGGTAAGAATA
66 T-TTTAATGAATAAACTGTACAAATTGGCTAAACCAAAAATTATAAAAATTTGATGGTAAAAATA
* *
51229512 TGTGTGAGTCTAGTTTTTGGGAAAATTAGTAGTTTTTAATTTAGAGTCTCG
130 TATGTGAGTATAGTTTTTGGGAAAATTAGTAGTTTTTAATTTAGAGTCTCG
* * * * ** *
51229563 TACCATGAGATAAATATTTTTTAGTGAAGAGAGGTCGGAACTATTGGACAGTGAAATAGGGGTAA
1 TACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGAAACTATCAGACAGTGAAACAGGGGTAA
* **
51229628 TTTTAATGAATAAACTGTACTAATTGGCTGCACCAAAAATTATAAAAATTTGATGGTAAAAATAT
66 TTTTAATGAATAAACTGTACAAATTGGCTAAACCAAAAATTATAAAAATTTGATGGTAAAAATAT
51229693 ATGTGAGTATAGTTTTTGGGAAAATTA
131 ATGTGAGTATAGTTTTTGGGAAAATTA
51229720 ATGTATCTTA
Statistics
Matches: 140, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
180 138 0.99
181 2 0.01
ACGTcount: A:0.39, C:0.08, G:0.20, T:0.33
Consensus pattern (180 bp):
TACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGAAACTATCAGACAGTGAAACAGGGGTAA
TTTTAATGAATAAACTGTACAAATTGGCTAAACCAAAAATTATAAAAATTTGATGGTAAAAATAT
ATGTGAGTATAGTTTTTGGGAAAATTAGTAGTTTTTAATTTAGAGTCTCG
Found at i:51234554 original size:20 final size:21
Alignment explanation
Indices: 51234509--51234555 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
51234499 GTTTTCATTG
*
51234509 AAAACCCTTCTTAAAATAAAA
1 AAAACCCTTATTAAAATAAAA
* *
51234530 GAAACCCTTATT-AACTAAAA
1 AAAACCCTTATTAAAATAAAA
51234550 AAAACC
1 AAAACC
51234556 TTTCAGTTAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.55, C:0.21, G:0.02, T:0.21
Consensus pattern (21 bp):
AAAACCCTTATTAAAATAAAA
Found at i:51235635 original size:29 final size:29
Alignment explanation
Indices: 51235572--51235679 Score: 130
Period size: 29 Copynumber: 3.8 Consensus size: 29
51235562 TTCACATACC
* * * *
51235572 TGTATCTGGCCCATTAAGACC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
51235600 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
51235629 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
51235658 TTTATATGGCCCGTTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
51235680 GCCACATTCA
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
27 1 0.01
28 16 0.23
29 51 0.74
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.27
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:51235675 original size:58 final size:57
Alignment explanation
Indices: 51235569--51235679 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 57
51235559 AAATTCACAT
* *
51235569 ACCTGTATCTGGCCCATTAAGACCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGACCAATCACATTCATATGGCCCATTAGGCCCAAATC
* * * *
51235626 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGACC-AATCACATTCATATGGCCCATTAGGCCCA
51235680 GCCACATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 21 0.45
58 26 0.55
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAAGACCAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:51235781 original size:18 final size:19
Alignment explanation
Indices: 51235758--51235793 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
51235748 TATGGTCCAA
51235758 TAGCCCA-TCAGGCCCATT
1 TAGCCCATTCAGGCCCATT
*
51235776 TAGCCCATTCTGGCCCAT
1 TAGCCCATTCAGGCCCAT
51235794 ATGGCCAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.19, C:0.39, G:0.17, T:0.25
Consensus pattern (19 bp):
TAGCCCATTCAGGCCCATT
Found at i:51240064 original size:49 final size:49
Alignment explanation
Indices: 51239843--51240301 Score: 692
Period size: 47 Copynumber: 9.6 Consensus size: 49
51239833 CCCTTCGGGA
* * * * *
51239843 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGG-
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51239889 CTCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CT-TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51239937 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51239984 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51240031 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51240080 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51240127 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51240178 CATATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51240227 CTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51240276 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
51240302 CACAATTATC
Statistics
Matches: 385, Mismatches: 18, Indels: 19
0.91 0.04 0.05
Matches are distributed among these distances:
46 3 0.01
47 183 0.48
48 2 0.01
49 152 0.39
51 45 0.12
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51240077 original size:96 final size:96
Alignment explanation
Indices: 51239843--51240301 Score: 721
Period size: 96 Copynumber: 4.8 Consensus size: 96
51239833 CCCTTCGGGA
* * * * * *
51239843 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGG-CTCTGTCACATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT-TATCACATATATA
51239905 CACTTTCACATTCATCACATCGGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
* *
51239937 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
51240000 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
51240031 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
51240096 ACTTTCACATTCATCACATCGGCCATTAGAC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
51240127 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCATATCACATGTAT
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA--TAT
51240192 ATACACTTTCACATTCATCACATCGGCCATTAGGC
62 ATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51240227 CTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
51240292 ACATTCACAT
66 ACTTTCACAT
51240302 CACAATTATC
Statistics
Matches: 339, Mismatches: 17, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
93 1 0.00
94 87 0.26
95 2 0.01
96 107 0.32
98 97 0.29
100 45 0.13
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51244001 original size:40 final size:40
Alignment explanation
Indices: 51243941--51244097 Score: 251
Period size: 40 Copynumber: 3.9 Consensus size: 40
51243931 CGAATACACG
* * * * * *
51243941 TCACCAGCATGATTGCTCTTCGAGATTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
51243981 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
51244021 TCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
51244061 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
51244098 TTAGTAACTC
Statistics
Matches: 109, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 109 1.00
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:51244122 original size:40 final size:40
Alignment explanation
Indices: 51243954--51244176 Score: 229
Period size: 40 Copynumber: 5.6 Consensus size: 40
51243944 CCAGCATGAT
* * * * *
51243954 TGCTCTTCGAGATTTAGCACGGATATATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATCAA
* *
51243994 TGCTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATCAA
*
51244034 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATCAA
** * * *
51244074 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCATCAA
* **
51244115 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAA
1 TGCTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCATCAA
*
51244155 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
51244177 CATCATTCGA
Statistics
Matches: 158, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.02
40 136 0.86
41 19 0.12
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATCAA
Found at i:51244521 original size:29 final size:29
Alignment explanation
Indices: 51244482--51244560 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
51244472 CTTAATAATC
*
51244482 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
51244512 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
51244541 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
51244561 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:51244604 original size:43 final size:43
Alignment explanation
Indices: 51244543--51244644 Score: 195
Period size: 43 Copynumber: 2.4 Consensus size: 43
51244533 GCATTTCAAG
51244543 CCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTA
1 CCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTA
*
51244586 CCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTG
1 CCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTA
51244629 CCCGCACACTTAGTGC
1 CCCGCACACTTAGTGC
51244645 TGAAAACCAA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.27, C:0.36, G:0.14, T:0.23
Consensus pattern (43 bp):
CCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTA
Found at i:51246867 original size:93 final size:94
Alignment explanation
Indices: 51246702--51247144 Score: 604
Period size: 93 Copynumber: 4.8 Consensus size: 94
51246692 CCCTTCGGGA
* * * * * * *
51246702 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-CTCTGTCACATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT-TATCACATATATACA
51246766 CTTTCACATTCATCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
* * *
51246796 CTCATCACATATATACACTTTCACATTCAGCACATC-GCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
51246860 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
51246889 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
51246953 -TT--CA--CATCACATC-GCCATTA---
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
51246973 ATTATCACTTATTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTATATA
1 CTTATCACATA-TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA--TATATA
51247038 CACTTTCACATTCATCACATCGGCCATTAGGC
63 CACTTTCACATTCATCACATCGGCCATTAGGC
* * *
51247070 CTTATCACATATATATACATTTTCACATTCATCACATCGGTCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
51247135 ACATTCACAT
64 ACTTTCACAT
51247145 CACAATTATC
Statistics
Matches: 311, Mismatches: 21, Indels: 32
0.85 0.06 0.09
Matches are distributed among these distances:
84 9 0.03
85 33 0.11
86 11 0.04
87 7 0.02
88 18 0.06
89 2 0.01
90 2 0.01
91 2 0.01
92 2 0.01
93 113 0.36
94 45 0.14
96 15 0.05
97 7 0.02
98 43 0.14
99 2 0.01
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:51246997 original size:40 final size:41
Alignment explanation
Indices: 51246753--51247148 Score: 224
Period size: 49 Copynumber: 8.6 Consensus size: 41
51246743 CTCGGCTCTG
* *
51246753 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCA
1 TCACATATATACACTTT--CA--CATCACATCGGCCATTA--CATTA
* *
51246800 TCACATATATACACTTTCACATTCAGCACATC-GCTATTAGGCCTTA
1 TCACATATATACACTTTCACA-T---CACATCGGCCATTA--CATTA
*
51246846 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTT--CA--CATCACATCGGCCATTA--CATTA
*
51246893 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGCCTTA
1 TCACATATATACACTTT--CA--CATCACATCGGCCATTA-CATTA
51246939 TCACATATATACAC-TTCACATCACATC-GCCATTA-ATTA
1 TCACATATATACACTTTCACATCACATCGGCCATTACATTA
* *
51246977 TCACTTATTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATA-TATACACTTT--CA--CATCACATCGGCCATTA--CATTA
*
51247025 TCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACA--TATATACACTTT--CA--CATCACATCGGCCATTA--CATTA
* * *
51247074 TCACATATATATACATTTTCACATTCATCACATCGGTCATTAGGCCTTA
1 TCAC--ATATATACACTTT--CA--CATCACATCGGCCATTA--CATTA
* *
51247123 TCACATATATATACATTCACATCACA
1 TCACATATATACACTTTCACATCACA
51247149 ATTATCCAAA
Statistics
Matches: 314, Mismatches: 12, Indels: 50
0.84 0.03 0.13
Matches are distributed among these distances:
38 9 0.03
39 7 0.02
40 9 0.03
41 9 0.03
42 2 0.01
43 11 0.04
44 10 0.03
45 13 0.04
46 55 0.18
47 86 0.27
48 9 0.03
49 89 0.28
50 4 0.01
51 1 0.00
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (41 bp):
TCACATATATACACTTTCACATCACATCGGCCATTACATTA
Found at i:51247038 original size:49 final size:47
Alignment explanation
Indices: 51246702--51247144 Score: 604
Period size: 47 Copynumber: 9.6 Consensus size: 47
51246692 CCCTTCGGGA
* * * * * *
51246702 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51246748 CTCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CT-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
51246796 CTCATCACATATATACACTTTCACATTCAGCACATC-GCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51246842 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51246889 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51246935 CTTATCACATATATACAC-TT--CA--CATCACATC-GCCATTA---
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51246973 ATTATCACTTATTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATA-TATACACTTTCACATTCATCACATCGGCCATTAGGC
51247021 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51247070 CTTATCACATATATATACATTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51247119 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
51247145 CACAATTATC
Statistics
Matches: 357, Mismatches: 23, Indels: 33
0.86 0.06 0.08
Matches are distributed among these distances:
38 9 0.03
39 7 0.02
40 9 0.03
41 9 0.03
42 2 0.01
43 2 0.01
44 9 0.03
45 9 0.03
46 65 0.18
47 136 0.38
48 9 0.03
49 88 0.25
50 2 0.01
51 1 0.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51257314 original size:46 final size:46
Alignment explanation
Indices: 51257264--51257436 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
51257254 TGGTTGAGCA
51257264 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
51257310 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
51257355 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51257403 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
51257437 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:51257420 original size:93 final size:93
Alignment explanation
Indices: 51257261--51257431 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
51257251 GGATGGTTGA
* *
51257261 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
51257326 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
51257354 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
51257419 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
51257432 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:51263181 original size:29 final size:29
Alignment explanation
Indices: 51263118--51263225 Score: 130
Period size: 29 Copynumber: 3.8 Consensus size: 29
51263108 TCCACATACC
* * * *
51263118 TGTATCTGGCCTATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
51263146 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
51263175 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
51263204 TTTATATGGCCTATTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
51263226 GTCACATTCA
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
27 1 0.01
28 16 0.23
29 51 0.74
30 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.29
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:51263221 original size:58 final size:57
Alignment explanation
Indices: 51263115--51263225 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 57
51263105 AAATCCACAT
* * *
51263115 ACCTGTATCTGGCCTATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
* * *
51263172 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCTATTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCC-AATCACATTCATATGGCCCATTAGGCCCA
51263226 GTCACATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 21 0.45
58 26 0.55
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:51265224 original size:40 final size:40
Alignment explanation
Indices: 51265169--51265343 Score: 305
Period size: 40 Copynumber: 4.4 Consensus size: 40
51265159 TATGTGCATA
*
51265169 GCATTCGTGCGGGTTATTACAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
51265209 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
51265249 GCATTCGTGCTGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
51265289 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
51265329 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
51265344 GTTACATCCG
Statistics
Matches: 127, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 127 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:51265933 original size:50 final size:50
Alignment explanation
Indices: 51265879--51266102 Score: 172
Period size: 50 Copynumber: 4.5 Consensus size: 50
51265869 TTAGGCCAAG
*
51265879 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATTAATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATTAATAGGTCACA
* * ** * * *
51265929 TGTGTAGTACTAAGTGTAGCCTACT--ATGCATACC-CGTTAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATG--TACCAAATTAA--TAGGTCACA
* * ** * *
51265980 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATATGGATAAGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATTAATAGGTCACA
* * * ** * * *
51266030 TGTGTAGTATTGAGTGCAGGGTACTATGTGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATTAATAGGTCACA
51266080 --TGT-GTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
51266103 TGCGTACCAG
Statistics
Matches: 137, Mismatches: 30, Indels: 17
0.74 0.16 0.09
Matches are distributed among these distances:
47 17 0.12
48 6 0.04
49 4 0.03
50 74 0.54
51 32 0.23
52 2 0.01
53 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATTAATAGGTCACA
Found at i:51266005 original size:151 final size:151
Alignment explanation
Indices: 51265769--51266110 Score: 429
Period size: 151 Copynumber: 2.3 Consensus size: 151
51265759 AAGATAGTTT
* * * * **
51265769 TAGGTCACGTGTGTAGTACTAAGTGCAGGCAACTATGCGTACCTGATAGTTTCGATCACGTGTGT
1 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGT
* * * *
51265834 AGTACTAAATGTAGGCTACTACGTATATCAGATGGTTAGGCCAAGTGTGTAGTACTAAGTGCAGG
66 AGTACTAAATGCAGGCTACTACGTATACCAGATGGATAAGCCAAGTGTGTAGTACTAAGTGCAGG
51265899 CTACTACATGTACCAAATTAA
131 CTACTACATGTACCAAATTAA
* * * *
51265920 TAGGTCGCATGTGTAGTACTAAGTGTAGCCTACTATGCATACCCGTTAACTTCGATCACGTGTGT
1 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGT
* * * * * * *
51265985 AGTACTAAGTGCAGGCTACTACGTGTACCATATGGATAAGTCACGTGTGTAGTATTGAGTGCAGG
66 AGTACTAAATGCAGGCTACTACGTATACCAGATGGATAAGCCAAGTGTGTAGTACTAAGTGCAGG
* ** * *
51266050 GTACTATGTGTACCAGATTGA
131 CTACTACATGTACCAAATTAA
51266071 TAGGTCGCA--TGT-GTACTAAGTGCAGGCTACTATGCGTACC
1 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
51266111 AGAGAGCTTC
Statistics
Matches: 162, Mismatches: 29, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
148 25 0.15
149 3 0.02
151 134 0.83
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (151 bp):
TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGT
AGTACTAAATGCAGGCTACTACGTATACCAGATGGATAAGCCAAGTGTGTAGTACTAAGTGCAGG
CTACTACATGTACCAAATTAA
Found at i:51267046 original size:180 final size:179
Alignment explanation
Indices: 51266667--51267026 Score: 528
Period size: 180 Copynumber: 2.0 Consensus size: 179
51266657 TCTTATATCT
*
51266667 GTACCATGGGATAAAT-ATTTTTAGTGAAGAAAGATCGGAACTGTCGGACAGTGAAACAAGGGTA
1 GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGGAACTGTCGGACAGTGAAACAAGGGTA
* * *
51266731 TCTTTAATGAATAAATTGTACTAATTGGCTAAACCAAAAATTTTGAAAATTTTATGGTAAGAGTA
66 ACTTTAATGAATAAAATGTACTAATTGGCTAAACCAAAAATTTTGAAAATTTGATGGTAAGAG-A
* * * *
51266796 TATGTGAGTTTAGTTTCTGGGAAAATTAATGGTTCTTAATTTGGAGTACC
130 TATATGAGTATAGTTTCTGAGAAAATTAATGGATCTTAATTTGGAGTACC
* * * * *
51266846 GTACCATGAGATAAATAATTTTTAGTGAAGAGAGGAT-GGAACTGTTGGATAGTGAAATAGGGGT
1 GTACCATGAGATAAATAATTTTTAGTGAAGA-AAGATCGGAACTGTCGGACAGTGAAACAAGGGT
* *
51266910 AACTTTAATGAATAAAATGTAGTAATTGGCTGAACCAAAAATTTTGAAAATTTGATGGTAAGA-A
65 AACTTTAATGAATAAAATGTACTAATTGGCTAAACCAAAAATTTTGAAAATTTGATGGTAAGAGA
* *
51266974 TATATGAGTATAGTTTTTGAGAAAATTAATGGATCTTAATTTGGAGTTCC
130 TATATGAGTATAGTTTCTGAGAAAATTAATGGATCTTAATTTGGAGTACC
51267024 GTA
1 GTA
51267027 ACTCTAGCAA
Statistics
Matches: 162, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
178 48 0.30
179 15 0.09
180 95 0.59
181 4 0.02
ACGTcount: A:0.37, C:0.07, G:0.23, T:0.33
Consensus pattern (179 bp):
GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGGAACTGTCGGACAGTGAAACAAGGGTA
ACTTTAATGAATAAAATGTACTAATTGGCTAAACCAAAAATTTTGAAAATTTGATGGTAAGAGAT
ATATGAGTATAGTTTCTGAGAAAATTAATGGATCTTAATTTGGAGTACC
Found at i:51269389 original size:43 final size:42
Alignment explanation
Indices: 51269335--51269504 Score: 216
Period size: 43 Copynumber: 4.0 Consensus size: 42
51269325 ATATCGTACA
* *
51269335 ATGCCAATGTCCCATACATGGTCTTACATGCCATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATG-AATCACATATCG
* * * *
51269378 ATGCCACTGTCCCAGACAGGGTCTTACACGAATCAAATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAATCACATATCG
*
51269419 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCCCATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATG-AATCACATATCG
** *
51269462 ATGCCAAAATCCCAGACATGGTCTTACATGAGAACACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGA-ATCACATATCG
51269505 GAAATCCTAT
Statistics
Matches: 109, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
41 29 0.27
42 15 0.14
43 65 0.60
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGAATCACATATCG
Found at i:51269476 original size:84 final size:84
Alignment explanation
Indices: 51269335--51269489 Score: 238
Period size: 84 Copynumber: 1.8 Consensus size: 84
51269325 ATATCGTACA
* * ***
51269335 ATGCCAATGTCCCATACATGGTCTTACATGCCATCACATATCGATGCCACTGTCCCAGACAGGGT
1 ATGCCAATGTCCCAGACATGGTCTTACATGCAATCACATATCGATGCCAAAATCCCAGACAGGGT
51269400 CTTACACGAATCAAATACG
66 CTTACACGAATCAAATACG
* * *
51269419 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCCCATATCGATGCCAAAATCCCAGACATGGT
1 ATGCCAATGTCCCAGACATGGTCTTACATGCAATCACATATCGATGCCAAAATCCCAGACAGGGT
51269484 CTTACA
66 CTTACA
51269490 TGAGAACACA
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
84 63 1.00
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (84 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGCAATCACATATCGATGCCAAAATCCCAGACAGGGT
CTTACACGAATCAAATACG
Found at i:51270105 original size:15 final size:15
Alignment explanation
Indices: 51270082--51270112 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
51270072 TCAAAAATTC
51270082 TAATACAAAACATAT
1 TAATACAAAACATAT
*
51270097 TAATCCAAAACATAT
1 TAATACAAAACATAT
51270112 T
1 T
51270113 TTCATAATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.16, G:0.00, T:0.29
Consensus pattern (15 bp):
TAATACAAAACATAT
Found at i:51271884 original size:43 final size:43
Alignment explanation
Indices: 51271771--51271922 Score: 143
Period size: 43 Copynumber: 3.5 Consensus size: 43
51271761 ACAATGCCAG
* *
51271771 CATCCCAGACGTGGTCTTACATGT-AATCAAATATAGATGCC-A
1 CATCCCAGACGTGGTCTTACATGTAAATCAAGTA-AGATACCAA
* *
51271813 CTATCCCAGACAG-GGTCTTACACG-AAATCAAGTACGATACCAA
1 C-ATCCCAGAC-GTGGTCTTACATGTAAATCAAGTAAGATACCAA
* **
51271856 CATCCCAGACGTGGTCTTACATGTAAATCATAAGT-TGATATGAA
1 CATCCCAGACGTGGTCTTACATGTAAATC--AAGTAAGATACCAA
* *
51271900 CGTCCCGGACGTGGTCTTACATG
1 CATCCCAGACGTGGTCTTACATG
51271923 ATAACACATA
Statistics
Matches: 92, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
41 1 0.01
42 25 0.27
43 34 0.37
44 28 0.30
45 4 0.04
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (43 bp):
CATCCCAGACGTGGTCTTACATGTAAATCAAGTAAGATACCAA
Found at i:51272549 original size:20 final size:20
Alignment explanation
Indices: 51272511--51272549 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
51272501 AACTTAGTAA
51272511 TCTAACACATATCTTTCATTT
1 TCTAACACATA-CTTTCATTT
51272532 TCTAACATCATA-TTTCAT
1 TCTAACA-CATACTTTCAT
51272550 AAAGTTCACA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.35
21 7 0.41
22 4 0.24
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (20 bp):
TCTAACACATACTTTCATTT
Found at i:51277816 original size:50 final size:49
Alignment explanation
Indices: 51277653--51277859 Score: 261
Period size: 49 Copynumber: 4.2 Consensus size: 49
51277643 CTGGTACGCA
* *
51277653 TAGTAGCCTGCACTTAGTACTACACATGTGACCAGTTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* * *
51277702 TAGTATCCTACACTTAGTACTACACACATGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
** * *
51277751 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * * *
51277801 TAGTAGCCTGCACTTAGTACTACACACTTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACG
51277852 TAGTAGCC
1 TAGTAGCC
51277860 CGCTCTTATT
Statistics
Matches: 135, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
49 74 0.55
50 44 0.33
51 17 0.13
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:51283288 original size:19 final size:20
Alignment explanation
Indices: 51283264--51283301 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
51283254 GGTACCACCA
51283264 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
51283283 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
51283302 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:51283671 original size:46 final size:44
Alignment explanation
Indices: 51283526--51283692 Score: 166
Period size: 46 Copynumber: 3.8 Consensus size: 44
51283516 AACCCGCCCC
*
51283526 TAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-TGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGAT-TT-GCATCCA
* * * ***
51283572 TAAATGAACTCGGACTCAACTCAACAAGTTCGGA--TGCCTAGT
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATTTGCATCCA
*
51283614 TACA-T--ACTCGGACTCAACTCAACGAGTTCGGACATTTGCGTCCA
1 TA-AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATTTGCATCCA
51283658 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
51283693 GCTCAACCAT
Statistics
Matches: 100, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
40 25 0.25
42 7 0.07
43 3 0.03
44 9 0.09
45 2 0.02
46 54 0.54
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.23
Consensus pattern (44 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATTTGCATCCA
Found at i:51283678 original size:86 final size:86
Alignment explanation
Indices: 51283533--51283694 Score: 245
Period size: 86 Copynumber: 1.9 Consensus size: 86
51283523 CCCTAAGTGA
**
51283533 ACTCGGACTCAACTCAACGAGCTCAGGTGTTCGCATCCATAAATGAACTCGGACTCAACTCAACA
1 ACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAACA
51283598 AGTTCGGATGCCTAGTTACAT
66 AGTTCGGATGCCTAGTTACAT
* * * *
51283619 ACTCGGACTCAACTCAACGAGTTC-GGACATTTGCGTCCATAAGTGAACTCGGACTCAACTCAAC
1 ACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
*
51283683 GAGTTCGGATGC
65 AAGTTCGGATGC
51283695 TCAACCATCC
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
85 2 0.03
86 66 0.97
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (86 bp):
ACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAACA
AGTTCGGATGCCTAGTTACAT
Found at i:51291078 original size:47 final size:47
Alignment explanation
Indices: 51291027--51291336 Score: 476
Period size: 47 Copynumber: 6.6 Consensus size: 47
51291017 GATAATTGTG
* *
51291027 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
51291074 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51291121 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51291170 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51291217 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
51291264 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51291311 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
51291337 TCCCGAAGGG
Statistics
Matches: 241, Mismatches: 20, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
47 196 0.81
49 45 0.19
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:51291174 original size:143 final size:141
Alignment explanation
Indices: 51291027--51291336 Score: 476
Period size: 143 Copynumber: 2.2 Consensus size: 141
51291017 GATAATTGTG
* * *
51291027 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
51291092 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGACAAGGCCGAATG
* *
51291157 GCCGATGTGATGA
129 GCCAACGTGATGA
51291170 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * *
51291235 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGC
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGC
*
51291300 CAACGTGATGG
131 CAACGTGATGA
*
51291311 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
51291337 TCCCGAAGGG
Statistics
Matches: 153, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
141 54 0.35
143 99 0.65
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGC
CAACGTGATGA
Found at i:51293830 original size:38 final size:38
Alignment explanation
Indices: 51293766--51293840 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
51293756 AATCCGAGTT
*
51293766 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
51293804 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
51293841 ACTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Done.