Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 157 of 333
Found at i:51294253 original size:40 final size:40
Alignment explanation
Indices: 51293894--51294241 Score: 536
Period size: 40 Copynumber: 8.7 Consensus size: 40
51293884 AGGTCTCGAC
51293894 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
51293933 GATGTATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
51293973 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
51294013 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
51294053 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
51294093 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * * *
51294133 GATATATCCGGGCTAAGTTCCAAAGAGCATTTGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * ** *
51294173 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
51294213 GTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCA
51294242 ATCATGCTGG
Statistics
Matches: 284, Mismatches: 24, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
39 4 0.01
40 280 0.99
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:51297796 original size:47 final size:47
Alignment explanation
Indices: 51297744--51298053 Score: 467
Period size: 47 Copynumber: 6.6 Consensus size: 47
51297734 GATAATTGTG
* *
51297744 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
51297791 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51297838 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51297887 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51297934 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
51297981 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51298028 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
51298054 TCCCGAAGGG
Statistics
Matches: 239, Mismatches: 22, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
47 195 0.82
49 44 0.18
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:51329277 original size:94 final size:93
Alignment explanation
Indices: 51329017--51329338 Score: 300
Period size: 94 Copynumber: 3.4 Consensus size: 93
51329007 GTATAATGTC
* * * *
51329017 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATCGAGGCCGATGCCATGTCCCAAA
1 GATG-CATGTCCCAGACATGGTCTTACACTAGCTCTCGTC-TCAATGCCGATGCCATGTCCCAAA
* *
51329082 CTTGGTCTTACACTAGCTCTCGCATATC-CATGTT
64 CATGGTCTTACACTAGCTCT--C-T-TCACA-GGT
* *
51329116 GATGTCATGTCCCAAACATGGTCTTACACT-GACAC-C-TCT-ATACGTGCCGATGCCATGTCCC
1 GATG-CATGTCCCAGACATGGTCTTACACTAG-CTCTCGTCTCA-A--TGCCGATGCCATGTCCC
* *
51329177 AGACATGGTCTTACACTGGCT-TACTTCACGAGGCT
61 AAACATGGTCTTACACTAGCTCT-CTTCAC-AGG-T
* *
51329212 GACGCATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAATGTCGATGCCATGTCCCAAACA
1 GATGCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAAACA
* * *
51329276 TGGTCTTACACTAACTCTCATAACATGGT
66 TGGTCTTACACTAGCTCTCTTCACA-GGT
51329305 CGATGCATGTCCCAGACAT-GTCTTACACTAGCTC
1 -GATGCATGTCCCAGACATGGTCTTACACTAGCTC
51329339 ACAATAACCC
Statistics
Matches: 188, Mismatches: 21, Indels: 33
0.78 0.09 0.14
Matches are distributed among these distances:
93 2 0.01
94 86 0.46
95 19 0.10
96 12 0.06
97 4 0.02
98 36 0.19
99 29 0.15
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (93 bp):
GATGCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAAACA
TGGTCTTACACTAGCTCTCTTCACAGGT
Found at i:51329346 original size:47 final size:49
Alignment explanation
Indices: 51329014--51329346 Score: 210
Period size: 48 Copynumber: 6.9 Consensus size: 49
51329004 AGGGTATAAT
* * * *
51329014 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-ATCGTCATCGA-G
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCA-CAT-AACAATG
* * * * * *
51329063 GCCGATGCCATGTCCCAAACTTGGTCTTACACTAGCTCTCGCATATCCAT-
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAG--CTCACATAACAATG
* * * * * *
51329113 GTTGATGTCATGTCCCAAACATGGTCTTACACT-G-ACACCT--CTATACG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAAC-A-ATG
* * * * * *
51329160 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACTTCACGA-G
1 -GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATG
* * * **
51329209 G-CTGACG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAAT-
1 GTC-GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATG
* * *
51329255 GTCGATGCCATGTCCCAAACATGGTCTTACACTAACTCTCATAAC-ATG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATG
51329303 GTCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACAATAAC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAC-ATAAC
51329347 CCATACATCA
Statistics
Matches: 225, Mismatches: 40, Indels: 40
0.74 0.13 0.13
Matches are distributed among these distances:
44 1 0.00
46 41 0.18
47 49 0.22
48 58 0.26
49 34 0.15
50 37 0.16
51 4 0.02
52 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATG
Found at i:51335028 original size:20 final size:20
Alignment explanation
Indices: 51335003--51335041 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
51334993 AGGGACTAAA
* *
51335003 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
51335023 ATGAAAAATTCTAAAATTT
1 ATGAAAAATTCTAAAATTT
51335042 TATGGATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.03, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:51343635 original size:42 final size:42
Alignment explanation
Indices: 51343588--51343668 Score: 153
Period size: 42 Copynumber: 1.9 Consensus size: 42
51343578 AAAATCTTGA
*
51343588 GATGATATAATAATGACTTGAAAGAATATTGCTTGATGAACT
1 GATGATATAATAATAACTTGAAAGAATATTGCTTGATGAACT
51343630 GATGATATAATAATAACTTGAAAGAATATTGCTTGATGA
1 GATGATATAATAATAACTTGAAAGAATATTGCTTGATGA
51343669 GCTCATCTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.42, C:0.06, G:0.19, T:0.33
Consensus pattern (42 bp):
GATGATATAATAATAACTTGAAAGAATATTGCTTGATGAACT
Found at i:51344868 original size:56 final size:56
Alignment explanation
Indices: 51344803--51344978 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
51344793 ACAAGGGATG
*
51344803 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
51344859 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
51344915 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
51344971 ATGGGCAA
1 ATGGGCAA
51344979 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:51346207 original size:39 final size:40
Alignment explanation
Indices: 51346107--51346291 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
51346097 TCGAATGATG
* * *
51346107 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
51346146 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
51346187 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
51346226 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
51346265 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
51346292 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:51346313 original size:79 final size:79
Alignment explanation
Indices: 51346160--51346324 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
51346150 GGACTAAGAT
** **
51346160 CCGAAGGCATTTGTGCGAGTTACTAATTTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
51346225 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
51346239 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
51346302 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
51346318 CCGAAGG
1 CCGAAGG
51346325 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:51351520 original size:18 final size:18
Alignment explanation
Indices: 51351479--51351521 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
51351469 TAAATATATA
* *
51351479 TTTTTTATAATTTTTTAG
1 TTTTTTATAAATTTTAAG
* *
51351497 TATTTTATAAATTTTAAT
1 TTTTTTATAAATTTTAAG
51351515 TTTTTTA
1 TTTTTTA
51351522 ATATTTATTT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (18 bp):
TTTTTTATAAATTTTAAG
Found at i:51351557 original size:24 final size:23
Alignment explanation
Indices: 51351510--51351560 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
51351500 TTTATAAATT
51351510 TTAATTTTTTTAATATTTATTTA
1 TTAATTTTTTTAATATTTATTTA
51351533 TTAATTTATATTT-ATATTT-TCTTA
1 TTAATTT-T-TTTAATATTTAT-TTA
51351557 TTAA
1 TTAA
51351561 AATCATAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
23 8 0.32
24 14 0.56
25 3 0.12
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (23 bp):
TTAATTTTTTTAATATTTATTTA
Found at i:51352344 original size:12 final size:12
Alignment explanation
Indices: 51352327--51352351 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51352317 ATTTTCTGTA
51352327 TAAAAAATATTT
1 TAAAAAATATTT
51352339 TAAAAAATATTT
1 TAAAAAATATTT
51352351 T
1 T
51352352 TTACAATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TAAAAAATATTT
Found at i:51355137 original size:45 final size:45
Alignment explanation
Indices: 51355063--51355173 Score: 125
Period size: 45 Copynumber: 2.4 Consensus size: 45
51355053 TAAAAAATTC
* *
51355063 AAATATTAAAAATTTATTAAAAATTAAAAAAAGTAAAAAATAAAAAG
1 AAATA-TAAAATTTTA-TAAAAATTAAAAAAACTAAAAAATAAAAAG
* * * * *
51355110 -ATTGTAAAATTTTATAAAAATTGAAAAAAACTATAAAATATATAG
1 AAATATAAAATTTTATAAAAATT-AAAAAAACTAAAAAATAAAAAG
51355155 AAATATAAAATTTTATAAA
1 AAATATAAAATTTTATAAA
51355174 GTCGTAAGAA
Statistics
Matches: 53, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
44 8 0.15
45 27 0.51
46 18 0.34
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.31
Consensus pattern (45 bp):
AAATATAAAATTTTATAAAAATTAAAAAAACTAAAAAATAAAAAG
Found at i:51355634 original size:86 final size:89
Alignment explanation
Indices: 51355540--51355708 Score: 229
Period size: 86 Copynumber: 1.9 Consensus size: 89
51355530 ATTTTTTATT
** * *
51355540 TTTTTTGAAAACTTTTGAGGGTC-TTTTTGATGCATTTTGAAAGTCCAAGTACCCAATTG-A-GT
1 TTTTTTGAAAAAGTTTGAGGG-CATTTTTAATGCATTTTGAAAGTCCAAGTACCCAATTGAATGC
*
51355602 AAAAAAAAGT-AGGGGCTTAATTCG
65 AAAAAAAAATGAGGGGCTTAATTCG
* * *
51355626 TTTTTTGAAAAAGTTTGAGGGCATTTTTAATGCATTTTGAAAGTTCAAGTGCTCAATTGAATGCA
1 TTTTTTGAAAAAGTTTGAGGGCATTTTTAATGCATTTTGAAAGTCCAAGTACCCAATTGAATGCA
51355691 AAAAAAAATGAGGGGCTT
66 AAAAAAAATGAGGGGCTT
51355709 TTTTTTTTTA
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
85 1 0.01
86 51 0.72
87 1 0.01
88 10 0.14
89 8 0.11
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (89 bp):
TTTTTTGAAAAAGTTTGAGGGCATTTTTAATGCATTTTGAAAGTCCAAGTACCCAATTGAATGCA
AAAAAAAATGAGGGGCTTAATTCG
Found at i:51355716 original size:86 final size:83
Alignment explanation
Indices: 51355538--51355735 Score: 217
Period size: 86 Copynumber: 2.4 Consensus size: 83
51355528 TAATTTTTTA
** * *
51355538 TTTTTTTTGAAAACTTTTGAGGGTCTTTTTGATGCATTTTGAAAGTCCAAGTACCCAATTGAGTA
1 TTTTTTTTGAAAAAGTTTGAGGG-CTTTTTAATGCATTTTGAAAGTCCAAGTACCCAATTGAGCA
*
51355603 AAAAAAAGTAGGGGCTTAAT
65 AAAAAAAATAGGGGCTT-AT
* * * *
51355623 TCGTTTTTTGAAAAAGTTTGAGGGCATTTTTAATGCATTTTGAAAGTTCAAGTGCTCAATTGAAT
1 T-TTTTTTTGAAAAAGTTTGAGGGC-TTTTTAATGCATTTTGAAAGTCCAAGTACCCAATTG-A-
51355688 GCAAAAAAAAATGAGGGGCTT-T
62 GCAAAAAAAAAT-AGGGGCTTAT
51355710 TTTTTTTT----AAGTTTGAGGGCTTTTTA
1 TTTTTTTTGAAAAAGTTTGAGGGCTTTTTA
51355736 CACCCTTAAG
Statistics
Matches: 98, Mismatches: 10, Indels: 14
0.80 0.08 0.11
Matches are distributed among these distances:
81 6 0.06
82 12 0.12
85 2 0.02
86 57 0.58
87 3 0.03
88 10 0.10
89 8 0.08
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (83 bp):
TTTTTTTTGAAAAAGTTTGAGGGCTTTTTAATGCATTTTGAAAGTCCAAGTACCCAATTGAGCAA
AAAAAAATAGGGGCTTAT
Found at i:51356862 original size:16 final size:17
Alignment explanation
Indices: 51356841--51356873 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
51356831 TTTTATTGTT
51356841 TATTATAATAAT-TTTA
1 TATTATAATAATGTTTA
*
51356857 TATTATATTAATGTTTA
1 TATTATAATAATGTTTA
51356874 GGATTATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (17 bp):
TATTATAATAATGTTTA
Found at i:51356982 original size:16 final size:17
Alignment explanation
Indices: 51356952--51356996 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
51356942 ATGTATGTAT
*
51356952 TTTTTAGTTTATAATAA
1 TTTTTAGATTATAATAA
51356969 TTTTTAGATT-TAAT-A
1 TTTTTAGATTATAATAA
*
51356984 -TTTAAGATTATAA
1 TTTTTAGATTATAA
51356997 AATAATATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 8 0.32
15 4 0.16
16 4 0.16
17 9 0.36
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.56
Consensus pattern (17 bp):
TTTTTAGATTATAATAA
Found at i:51358722 original size:27 final size:27
Alignment explanation
Indices: 51358686--51358882 Score: 227
Period size: 27 Copynumber: 7.3 Consensus size: 27
51358676 ACACAGAAGC
* *
51358686 TATTCTTTCATAATTCGCCATAAAGGC
1 TATTCTTTCATAATTCGCCACAAAGGT
51358713 TATTCTTTCATAATAT-GCCACAAAGGT
1 TATTCTTTCATAAT-TCGCCACAAAGGT
* *
51358740 TATTCCTTCATAGTTCGCCACAAAGGT
1 TATTCTTTCATAATTCGCCACAAAGGT
* * *
51358767 TGTTCTTTCATAATACGCCACAAAGGC
1 TATTCTTTCATAATTCGCCACAAAGGT
* *
51358794 TATTCTTTCATAGTTCACCACAAAGGT
1 TATTCTTTCATAATTCGCCACAAAGGT
* *
51358821 TATTCTTTCGTAATACGCCACAAAGGT
1 TATTCTTTCATAATTCGCCACAAAGGT
* * * *
51358848 TTTTCTTTTA-AACTCCACCACAAAGGT
1 TATTCTTTCATAA-TTCGCCACAAAGGT
51358875 TATTCTTT
1 TATTCTTT
51358883 TGTAATACGA
Statistics
Matches: 143, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
26 3 0.02
27 139 0.97
28 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.37
Consensus pattern (27 bp):
TATTCTTTCATAATTCGCCACAAAGGT
Found at i:51358750 original size:54 final size:54
Alignment explanation
Indices: 51358686--51358909 Score: 259
Period size: 54 Copynumber: 4.1 Consensus size: 54
51358676 ACACAGAAGC
* * * *
51358686 TATTCTTTCATAATTCGCCATAAAGGCTATTCTTTCATAATATGCCACAAAGGT
1 TATTCTTTCATAGTTCGCCACAAAGGTTATTCTTTCATAATACGCCACAAAGGT
* * *
51358740 TATTCCTTCATAGTTCGCCACAAAGGTTGTTCTTTCATAATACGCCACAAAGGC
1 TATTCTTTCATAGTTCGCCACAAAGGTTATTCTTTCATAATACGCCACAAAGGT
* *
51358794 TATTCTTTCATAGTTCACCACAAAGGTTATTCTTTCGTAATACGCCACAAAGGT
1 TATTCTTTCATAGTTCGCCACAAAGGTTATTCTTTCATAATACGCCACAAAGGT
* * * * * * ** * * * *
51358848 TTTTCTTTTAAACTCCACCACAAAGGTTATTCTTTTGTAATACGACTCAAGGGC
1 TATTCTTTCATAGTTCGCCACAAAGGTTATTCTTTCATAATACGCCACAAAGGT
51358902 TATTCTTT
1 TATTCTTT
51358910 TCTAGCGTGT
Statistics
Matches: 147, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 147 1.00
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (54 bp):
TATTCTTTCATAGTTCGCCACAAAGGTTATTCTTTCATAATACGCCACAAAGGT
Found at i:51361738 original size:19 final size:19
Alignment explanation
Indices: 51361709--51361764 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
51361699 AGCAAAAATT
*
51361709 AAAAGCTTCAACATAAACC
1 AAAAACTTCAACATAAACC
* * *
51361728 CAAAACTTCAATAGAAACC
1 AAAAACTTCAACATAAACC
51361747 AAAAACTTCAACATAAAC
1 AAAAACTTCAACATAAAC
51361765 AAATTTTTGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.55, C:0.25, G:0.04, T:0.16
Consensus pattern (19 bp):
AAAAACTTCAACATAAACC
Found at i:51362076 original size:78 final size:76
Alignment explanation
Indices: 51361919--51362117 Score: 188
Period size: 78 Copynumber: 2.6 Consensus size: 76
51361909 CACACTGGCA
* * * * *
51361919 ACACTCATTAAATATATATACTTTTCTTCACAGG-CTTTTTTTTGACTCATCACTTGTGCCGCTT
1 ACAC-CATTAAAAATATATATTTTTCTTCACAGGTTTTTTTTTTGACACATCACTGGTGCCGCTT
*
51361983 GACACACCAACG
65 GACAAACCAACG
* * *
51361995 ACACCCGTTAAAAATATATATTTTTCTTCACAGGTTTTTTTTTCTGACACATCA-TCGGTGTCGT
1 ACA-CCATTAAAAATATATATTTTTCTTCACAGGTTTTTTTTT-TGACACATCACT-GGTGCCGC
* *
51362059 TTGACAAACCGATG
63 TTGACAAACCAACG
* **
51362073 ACACCATTAAAAA-ATTATTATTTTTTCTTCATAGCCTTTTTTTTT
1 ACACCATTAAAAATA-TA-TA-TTTTTCTTCACAGGTTTTTTTTTT
51362118 ACATTGGTTT
Statistics
Matches: 101, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
76 30 0.30
77 20 0.20
78 31 0.31
79 20 0.20
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (76 bp):
ACACCATTAAAAATATATATTTTTCTTCACAGGTTTTTTTTTTGACACATCACTGGTGCCGCTTG
ACAAACCAACG
Found at i:51371124 original size:33 final size:33
Alignment explanation
Indices: 51371082--51371151 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
51371072 TTTCTTCTTG
*
51371082 ACATTCCAGCTCCTATCTAGCAACAAAACACCC
1 ACATTCCAGCTCCTATCCAGCAACAAAACACCC
* * *
51371115 ACATTCCAGCTCCTGTCCAGCAGCAAAACACTC
1 ACATTCCAGCTCCTATCCAGCAACAAAACACCC
51371148 ACAT
1 ACAT
51371152 CACCAAACAC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.34, C:0.39, G:0.09, T:0.19
Consensus pattern (33 bp):
ACATTCCAGCTCCTATCCAGCAACAAAACACCC
Found at i:51385307 original size:27 final size:27
Alignment explanation
Indices: 51385266--51385369 Score: 104
Period size: 27 Copynumber: 3.9 Consensus size: 27
51385256 GGAGGAAGCG
*
51385266 TCTGGTGGCTATGCCACAATTATCTAA
1 TCTGGTGGCTCTGCCACAATTATCTAA
**
51385293 TCTGGTGGCTCTGCCACATATT-TCTGT
1 TCTGGTGGCTCTGCCACA-ATTATCTAA
* * *
51385320 TCTGGTGGCTTTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAATTATCT-AA
* *
51385348 TCTGGTGACTCTGTCAC-ATTAT
1 TCTGGTGGCTCTGCCACAATTAT
51385370 TTGTTCTGGC
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
26 3 0.05
27 44 0.69
28 17 0.27
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.38
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAATTATCTAA
Found at i:51385375 original size:54 final size:54
Alignment explanation
Indices: 51385266--51385378 Score: 149
Period size: 54 Copynumber: 2.1 Consensus size: 54
51385256 GGAGGAAGCG
*
51385266 TCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATTTCTGT
1 TCTGGTGGCTATGCCACAATTATCTAATCTGGTGACTCTGCCACATATTTCTGT
* * * *
51385320 TCTGGTGGCTTTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATT-TGT
1 TCTGGTGGCTATGCCACAATTATCT-AATCTGGTGACTCTGCCACATAT-TTCTGT
51385374 TCTGG
1 TCTGG
51385379 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
54 32 0.62
55 20 0.38
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.40
Consensus pattern (54 bp):
TCTGGTGGCTATGCCACAATTATCTAATCTGGTGACTCTGCCACATATTTCTGT
Found at i:51393150 original size:27 final size:27
Alignment explanation
Indices: 51393110--51393222 Score: 122
Period size: 27 Copynumber: 4.2 Consensus size: 27
51393100 AGGAAGCGTC
*
51393110 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
51393137 CTGGTGGCTCTGCCACATATT-TATGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* *
51393164 CTGGTGGCTCTGCCACGATTATCTATAT
1 CTGGTGGCTCTGCCACAATTATCT-GAT
* * *
51393192 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
51393218 CTGGT
1 CTGGT
51393223 AGCCATGCTG
Statistics
Matches: 72, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 9 0.12
27 45 0.62
28 18 0.25
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:51393218 original size:54 final size:54
Alignment explanation
Indices: 51393110--51393222 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
51393100 AGGAAGCGTC
* *
51393110 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTATGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATATGTT
* * * * *
51393164 CTGGTGGCTCTGCCACGATTATCTATATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCT-GATCTGGTGACTCTGCCACATATATATGTT
51393218 CTGGT
1 CTGGT
51393223 AGCCATGCTG
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATATGTT
Found at i:51396659 original size:30 final size:29
Alignment explanation
Indices: 51396616--51396676 Score: 113
Period size: 30 Copynumber: 2.1 Consensus size: 29
51396606 CAAACAGCCG
51396616 AAGCTAGTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
51396645 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
51396675 AA
1 AA
51396677 ACTTTCGATT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 7 0.23
30 24 0.77
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:51404010 original size:39 final size:41
Alignment explanation
Indices: 51403918--51404014 Score: 119
Period size: 39 Copynumber: 2.3 Consensus size: 41
51403908 AAATATTTCT
**
51403918 GCACACTTAGTGCCATCTCAAATAGCCGAGACTAAGTTGGTATC
1 GCACACTTAGTG-C--CTCAAATAGCCGAGACTAAGTTGAAATC
51403962 GCACACTTAGTGCCTCAAATAGCCGA-AGCT-AGTT-AAATC
1 GCACACTTAGTGCCTCAAATAGCCGAGA-CTAAGTTGAAATC
51404001 GCACACTTAGTGCC
1 GCACACTTAGTGCC
51404015 AAAGCTAGTT
Statistics
Matches: 50, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
39 17 0.34
40 5 0.10
41 15 0.30
43 1 0.02
44 12 0.24
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.24
Consensus pattern (41 bp):
GCACACTTAGTGCCTCAAATAGCCGAGACTAAGTTGAAATC
Found at i:51404030 original size:30 final size:30
Alignment explanation
Indices: 51403987--51404069 Score: 159
Period size: 30 Copynumber: 2.8 Consensus size: 30
51403977 CAAATAGCCG
51403987 AAGCTAG-TTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
51404016 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
51404046 AAGCTAGTTTAAATCGCACACTTA
1 AAGCTAGTTTAAATCGCACACTTA
51404070 ACATCATATT
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
29 7 0.13
30 46 0.87
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.27
Consensus pattern (30 bp):
AAGCTAGTTTAAATCGCACACTTAGTGCCA
Found at i:51421999 original size:9 final size:9
Alignment explanation
Indices: 51421985--51422010 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
51421975 CTTAACAACC
51421985 AGTGTTGGG
1 AGTGTTGGG
51421994 AGTGTTGGG
1 AGTGTTGGG
51422003 AGTGTTGG
1 AGTGTTGG
51422011 AAGCCCCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.54, T:0.35
Consensus pattern (9 bp):
AGTGTTGGG
Found at i:51431736 original size:51 final size:51
Alignment explanation
Indices: 51431660--51431761 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
51431650 GAAATATTAG
51431660 GGGCAAAAATGTAATCTTTCCATAATATGATTTTTGGACTGAATTGAACAA
1 GGGCAAAAATGTAATCTTTCCATAATATGATTTTTGGACTGAATTGAACAA
51431711 GGGCAAAAATGTAATCTTTCCATAATATGATTTTTGGACTGAATTGAACAA
1 GGGCAAAAATGTAATCTTTCCATAATATGATTTTTGGACTGAATTGAACAA
51431762 TCTGTGTATT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (51 bp):
GGGCAAAAATGTAATCTTTCCATAATATGATTTTTGGACTGAATTGAACAA
Found at i:51436977 original size:47 final size:47
Alignment explanation
Indices: 51436926--51437163 Score: 370
Period size: 47 Copynumber: 5.1 Consensus size: 47
51436916 TTCCACGTTT
* *
51436926 ATCACATTAGCCATTCTAG-CTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTC-GGCCTTATCACACATATGCATGTTCACATTC
51436973 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
*
51437020 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
*
51437067 GTCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* * * * **
51437114 ATCACATTGGCCATTAGGCCTTATCTCATATATACACATTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
51437161 ATC
1 ATC
51437164 TCATAAAATC
Statistics
Matches: 178, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
46 1 0.01
47 177 0.99
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
Found at i:51437000 original size:22 final size:22
Alignment explanation
Indices: 51436973--51437048 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
51436963 GTTCACATTC
51436973 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
51436995 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
51437019 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
51437042 ATCACAT
1 ATCACAT
51437049 ATATGCATGT
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 13 0.32
23 11 0.27
24 11 0.27
25 6 0.15
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:51437119 original size:25 final size:25
Alignment explanation
Indices: 51436948--51437025 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
51436938 ATTCTAGCTT
51436948 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
51436973 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
51436995 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
51437020 ATCACA
1 ATCACA
51437026 TTGGCCATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 11 0.28
25 12 0.30
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:51440711 original size:28 final size:28
Alignment explanation
Indices: 51440679--51440815 Score: 141
Period size: 28 Copynumber: 4.8 Consensus size: 28
51440669 ACCTGTATAA
* *
51440679 GGCCCACTAGGCCCAATCTCATTCATAT
1 GGCCCATTAGGCCCAATCACATTCATAT
* * *
51440707 GGCCCATTAAGCCCAATCACATTTATGT
1 GGCCCATTAGGCCCAATCACATTCATAT
* * *
51440735 GGCCCATTAGGCCTAAATCACATTTATGT
1 GGCCCATTAGGCC-CAATCACATTCATAT
** *
51440764 GGCCCATTAAACCCAAACCACATTCATAT
1 GGCCCATTAGGCCC-AATCACATTCATAT
51440793 GG-CCATTAGGCCCAAATCACATT
1 GGCCCATTAGGCCC-AATCACATT
51440816 TACAATCATG
Statistics
Matches: 91, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
28 53 0.58
29 38 0.42
ACGTcount: A:0.30, C:0.31, G:0.14, T:0.26
Consensus pattern (28 bp):
GGCCCATTAGGCCCAATCACATTCATAT
Found at i:51440779 original size:57 final size:57
Alignment explanation
Indices: 51440679--51440817 Score: 165
Period size: 57 Copynumber: 2.4 Consensus size: 57
51440669 ACCTGTATAA
* * * * * * * *
51440679 GGCCCACTAGGCCCAATCTCATTCATATGGCCCATTAAGCCC-AATCACATTTATGT
1 GGCCCATTAGGCCAAATCACATTTATATGGCCCATTAAACCCAAACCACATTCATAT
*
51440735 GGCCCATTAGGCCTAAATCACATTTATGTGGCCCATTAAACCCAAACCACATTCATAT
1 GGCCCATTAGGCC-AAATCACATTTATATGGCCCATTAAACCCAAACCACATTCATAT
51440793 GG-CCATTAGGCCCAAATCACATTTA
1 GGCCCATTAGG-CCAAATCACATTTA
51440818 CAATCATGCT
Statistics
Matches: 71, Mismatches: 9, Indels: 5
0.84 0.11 0.06
Matches are distributed among these distances:
56 12 0.17
57 44 0.62
58 15 0.21
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (57 bp):
GGCCCATTAGGCCAAATCACATTTATATGGCCCATTAAACCCAAACCACATTCATAT
Found at i:51443937 original size:16 final size:16
Alignment explanation
Indices: 51443894--51443939 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
51443884 GTAGCCAAAT
51443894 TTTCAGCTTTTCGACA
1 TTTCAGCTTTTCGACA
* *
51443910 TTTC-GACATTTCGGCA
1 TTTCAG-CTTTTCGACA
51443926 TTTCAGCTTTTCGA
1 TTTCAGCTTTTCGA
51443940 GATCTGCTGA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
15 1 0.04
16 22 0.92
17 1 0.04
ACGTcount: A:0.17, C:0.24, G:0.15, T:0.43
Consensus pattern (16 bp):
TTTCAGCTTTTCGACA
Found at i:51448068 original size:26 final size:25
Alignment explanation
Indices: 51448039--51448090 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
51448029 ACTTTTGTTA
51448039 AGGGACT-TTTGATGAAAATGTGAAAT
1 AGGGACTATTTG-TG-AAATGTGAAAT
51448065 AGGGACTAATTTGTGAAATGTGAAAT
1 AGGGACT-ATTTGTGAAATGTGAAAT
51448091 TTTGAGTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 18 0.75
27 2 0.08
28 4 0.17
ACGTcount: A:0.38, C:0.04, G:0.27, T:0.31
Consensus pattern (25 bp):
AGGGACTATTTGTGAAATGTGAAAT
Found at i:51454093 original size:20 final size:21
Alignment explanation
Indices: 51454068--51454107 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
51454058 CCCTTGAAAT
*
51454068 AGGGC-ACAAGCCCGTGTGGA
1 AGGGCAACAAGCCCGCGTGGA
*
51454088 AGGGCAACACGCCCGCGTGG
1 AGGGCAACAAGCCCGCGTGG
51454108 TCATTATAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.30, G:0.40, T:0.07
Consensus pattern (21 bp):
AGGGCAACAAGCCCGCGTGGA
Found at i:51455485 original size:48 final size:50
Alignment explanation
Indices: 51455272--51455504 Score: 173
Period size: 48 Copynumber: 4.8 Consensus size: 50
51455262 TAGGGTGTAT
* * * *
51455272 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-CAT-TAAG
1 TGCCAATGCCATGTTCCAGACATGGTCTTACACTGACAC-TCACATATACG
* * * * * *
51455321 T--CGATGCCATGTCCCAGACATTGTCTTCCATTGACTA-TCA-AAAT-CG
1 TGCCAATGCCATGTTCCAGACATGGTCTTACACTGAC-ACTCACATATACG
* * * * *
51455367 AGGCCGACGCCATG-TCCTAGACATGGTCTTACAC-AAGCACTCACATATCCG
1 -TGCCAATGCCATGTTCC-AGACATGGTCTTACACTGA-CACTCACATATACG
* * * *
51455418 TGCCGATACCATGTCCCAGACATGGTCTTACACTGACAC-CTC-TATACG
1 TGCCAATGCCATGTTCCAGACATGGTCTTACACTGACACTCACATATACG
51455466 TGCCAATGCCATGTTCCAGACATGGTCTTACACTGACAC
1 TGCCAATGCCATGTTCCAGACATGGTCTTACACTGACAC
51455505 ATCTCGTAAG
Statistics
Matches: 145, Mismatches: 26, Indels: 27
0.73 0.13 0.14
Matches are distributed among these distances:
46 4 0.03
47 30 0.21
48 45 0.31
49 29 0.20
50 32 0.22
51 5 0.03
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (50 bp):
TGCCAATGCCATGTTCCAGACATGGTCTTACACTGACACTCACATATACG
Found at i:51455571 original size:46 final size:46
Alignment explanation
Indices: 51455281--51455683 Score: 180
Period size: 46 Copynumber: 8.5 Consensus size: 46
51455271 TTGCCAATGC
* *
51455281 CATGTCCCAGACATGGTCTTACACTGGCTCATCCAT-T--AAGTCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTC-T-CATCTCGAGGCCGATG
* * * * ** *
51455327 CCATGTCCCAGACATTGTCTTCCATTGACTATCAAAATCGAGGCCGACG
1 -CATGTCCCAGACA-TGTCTTACACTGGCTCTC-ATCTCGAGGCCGATG
* * * * * * *
51455376 CCATGTCCTAGACATGGTCTTACACAAGCACTCACATATCCG-TGCCGATAC
1 -CATGTCCCAGACAT-GTCTTACAC-TG-GCTCTCATCT-CGAGGCCGAT-G
* * * * *
51455427 CATGTCCCAGACATGGTCTTACACTGACACCTCTAT-ACG-TGCCAATG
1 CATGTCCCAGACAT-GTCTTACACTGGC-TCTC-ATCTCGAGGCCGATG
* * * * *
51455474 CCATGTTCCAGACATGGTCTTACACT-G-ACACATCTCGTAAG-TGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCG-AGGCCGATG
* *
51455520 AATGTCACAGACATGTCTTACACTGGCT-TACATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAGGCCGATG
* * * * *
51455566 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCGATG
* * * * *
51455612 CCATGTCTCAGACATGGTCGTACACTGGCTCTCATGAT-GTGGCCAATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAGGCCGATG
*
51455660 CATGTCCCAAACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
51455684 AATGCACAAA
Statistics
Matches: 272, Mismatches: 60, Indels: 49
0.71 0.16 0.13
Matches are distributed among these distances:
44 12 0.04
45 19 0.07
46 62 0.23
47 52 0.19
48 57 0.21
49 30 0.11
50 34 0.12
51 6 0.02
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCGATG
Found at i:51457824 original size:28 final size:28
Alignment explanation
Indices: 51457786--51457911 Score: 191
Period size: 28 Copynumber: 4.5 Consensus size: 28
51457776 TAAATTGTAC
* *
51457786 AGCAGTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
51457814 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
51457842 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* *
51457870 AGCACTAAGTGTGCAAG-TTGGTTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
51457897 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
51457912 GACTTAATAT
Statistics
Matches: 92, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
27 22 0.24
28 70 0.76
ACGTcount: A:0.26, C:0.11, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:51466850 original size:47 final size:47
Alignment explanation
Indices: 51466796--51467127 Score: 522
Period size: 47 Copynumber: 7.1 Consensus size: 47
51466786 TTAGGATTTT
** * *
51466796 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
51466843 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
51466890 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
51466937 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
51466984 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
51467031 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
51467078 ATGTTATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
51467125 ATG
1 ATG
51467128 CGAAATGTGT
Statistics
Matches: 269, Mismatches: 15, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
47 266 0.99
48 3 0.01
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:51467157 original size:46 final size:46
Alignment explanation
Indices: 51467101--51467329 Score: 388
Period size: 46 Copynumber: 5.0 Consensus size: 46
51467091 GGAAGTGTAT
* *
51467101 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
51467147 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
51467193 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
51467239 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * * *
51467285 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATC-TGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGA-AACGTGTATGAGATG
51467330 TGTATATATA
Statistics
Matches: 176, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
46 174 0.99
47 2 0.01
ACGTcount: A:0.34, C:0.10, G:0.32, T:0.24
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:51471347 original size:42 final size:42
Alignment explanation
Indices: 51471283--51471442 Score: 180
Period size: 42 Copynumber: 3.8 Consensus size: 42
51471273 TTAGGGTTAC
* * * *
51471283 TGAGATTACGTGTAAGAACATATTTGGGATATGGAATCTATA
1 TGAGATTACATGTAAGACCATATCTGGGATATGGAATCGATA
* *
51471325 TGAGATTTCATGTAAGACCATATCTGGGATAT-GACATCGATG
1 TGAGATTACATGTAAGACCATATCTGGGATATGGA-ATCGATA
* * *
51471367 TGAGACTT-CATGTAAGACCATAGCTAGGCTATTGGAATCGATA
1 TGAGA-TTACATGTAAGACCATATCTGGGATA-TGGAATCGATA
* *
51471410 CGAGATTACATGTAACACCATATCTGGGATATG
1 TGAGATTACATGTAAGACCATATCTGGGATATG
51471443 ACATTGGTAC
Statistics
Matches: 98, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
41 2 0.02
42 62 0.63
43 32 0.33
44 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (42 bp):
TGAGATTACATGTAAGACCATATCTGGGATATGGAATCGATA
Found at i:51487201 original size:79 final size:81
Alignment explanation
Indices: 51487065--51487246 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 81
51487055 AATGATGTCT
* *
51487065 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCTGGACTAAGATCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGT
*
51487129 GCGAGATACTA-ATTCC
66 GCGAGATACTATA-ACC
* * * **
51487145 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCTGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCC-GAAGGCATTTG
*
51487207 TGCGAGTTACTATAACC
65 TGCGAGATACTATAACC
*
51487224 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
51487247 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 10, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 55 0.62
80 30 0.34
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (81 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGT
GCGAGATACTATAACC
Found at i:51487260 original size:40 final size:40
Alignment explanation
Indices: 51487065--51487246 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
51487055 AATGATGTCT
* * * * *
51487065 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACC
* * *
51487105 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACC
51487145 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
* *
51487184 GGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
*
51487224 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
51487247 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
39 35 0.29
40 76 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
Found at i:51487268 original size:79 final size:79
Alignment explanation
Indices: 51487109--51487279 Score: 208
Period size: 79 Copynumber: 2.2 Consensus size: 79
51487099 ATATCTGGAC
* **
51487109 TAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGT
1 TAAGATCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGT
51487174 TACTAAATCCGGGT
66 TACTAAATCCGGGT
* *
51487188 TAAG-TCCTGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACG
1 TAAGATCC-GAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACG
*
51487251 AG-TAGCTATATCC-GGT
63 AGTTA-CTAAATCCGGGT
51487267 TAA-ATTCCGAAGG
1 TAAGA-TCCGAAGG
51487280 TACGTGATTT
Statistics
Matches: 80, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
78 5 0.06
79 47 0.59
80 28 0.35
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
TAAGATCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGT
TACTAAATCCGGGT
Found at i:51499616 original size:47 final size:47
Alignment explanation
Indices: 51499487--51499617 Score: 167
Period size: 47 Copynumber: 2.8 Consensus size: 47
51499477 TAGCCCAGCC
51499487 ATGGTCTTATACGG-ATCACATATCACACTGATGCCATATCCAAGAT
1 ATGGTCTTATACGGAATCACATATCACACTGATGCCATATCCAAGAT
* * * * * * *
51499533 ATGGTCTTACACAGAAGCATATATCACACCGATGCCATATCCCATAT
1 ATGGTCTTATACGGAATCACATATCACACTGATGCCATATCCAAGAT
*
51499580 ATGGTCTTATACGGAAATCACATATCACA-TGTTGCCAT
1 ATGGTCTTATACGG-AATCACATATCACACTGATGCCAT
51499618 GGTCCACCCA
Statistics
Matches: 70, Mismatches: 13, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
46 12 0.17
47 46 0.66
48 12 0.17
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (47 bp):
ATGGTCTTATACGGAATCACATATCACACTGATGCCATATCCAAGAT
Found at i:51507947 original size:41 final size:41
Alignment explanation
Indices: 51507872--51507949 Score: 97
Period size: 41 Copynumber: 1.9 Consensus size: 41
51507862 ATAAAAATTT
* *
51507872 ATTTATTTAAGTTAAATTAATGGATTAATTAACTATAATAA
1 ATTTATTTAACTTAAATTAATGGATTAATAAACTATAATAA
*
51507913 ATTTAATTTAACTTAAA-TAATGGCTTTAA-AAACTATA
1 ATTT-ATTTAACTTAAATTAATGG-ATTAATAAACTATA
51507950 GAAATTATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
41 17 0.53
42 15 0.47
ACGTcount: A:0.46, C:0.05, G:0.06, T:0.42
Consensus pattern (41 bp):
ATTTATTTAACTTAAATTAATGGATTAATAAACTATAATAA
Found at i:51509202 original size:25 final size:26
Alignment explanation
Indices: 51509174--51509223 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
51509164 TTTATTCATG
51509174 TTGTTTCAA-TCTTTTTATTTTAATT
1 TTGTTTCAACTCTTTTTATTTTAATT
*
51509199 TTGTTTCAAGCTTTTTTTATTTTAA
1 TTGTTTCAA-CTCTTTTTATTTTAA
51509224 CTTCAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 9 0.41
27 13 0.59
ACGTcount: A:0.20, C:0.08, G:0.06, T:0.66
Consensus pattern (26 bp):
TTGTTTCAACTCTTTTTATTTTAATT
Found at i:51509748 original size:72 final size:70
Alignment explanation
Indices: 51509606--51509772 Score: 172
Period size: 72 Copynumber: 2.3 Consensus size: 70
51509596 TTGTATTTAC
* * * * * * *
51509606 TAAAAATAATGATATTTGAAATAATTAATTAATTTTATAATTTTATAATTTTCCATACCCATAAT
1 TAAAAAAAATGATATTTGAAATAATGAATTAATTTTATAATATTAGAATTTACAATACCCACAAT
*
51509671 GTAGG
66 ATAGG
** * * *
51509676 TGAAAAAACAATGATATTTGAAATAATGGTTTTATTTTATAATATTAGAATTTACAATATCCACG
1 T-AAAAAA-AATGATATTTGAAATAATGAATTAATTTTATAATATTAGAATTTACAATACCCACA
51509741 ATATAGG
64 ATATAGG
* *
51509748 TAAAAAAAATAAAAATTTGAAATAA
1 TAAAAAAAAT-GATATTTGAAATAA
51509773 AAATATAAAT
Statistics
Matches: 79, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
70 4 0.05
71 23 0.29
72 52 0.66
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.38
Consensus pattern (70 bp):
TAAAAAAAATGATATTTGAAATAATGAATTAATTTTATAATATTAGAATTTACAATACCCACAAT
ATAGG
Found at i:51509988 original size:13 final size:13
Alignment explanation
Indices: 51509970--51509994 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51509960 CAACCTATTT
51509970 ATTAATTAAAAAC
1 ATTAATTAAAAAC
51509983 ATTAATTAAAAA
1 ATTAATTAAAAA
51509995 TTAAAATAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
ATTAATTAAAAAC
Found at i:51514735 original size:21 final size:22
Alignment explanation
Indices: 51514706--51514746 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
51514696 AAGTTACACG
51514706 GGCTGTCCACACGGGCGTGTCA
1 GGCTGTCCACACGGGCGTGTCA
* *
51514728 GGCT-TCCACATGGGTGTGT
1 GGCTGTCCACACGGGCGTGT
51514747 AGACCCCCAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.12, C:0.27, G:0.37, T:0.24
Consensus pattern (22 bp):
GGCTGTCCACACGGGCGTGTCA
Found at i:51515088 original size:14 final size:14
Alignment explanation
Indices: 51515066--51515100 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
51515056 TTGGGTATCC
* *
51515066 GCATGCATACCTCT
1 GCATACATACATCT
51515080 GCATACATACATCT
1 GCATACATACATCT
51515094 GCATACA
1 GCATACA
51515101 AAGCTTTTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.31, C:0.31, G:0.11, T:0.26
Consensus pattern (14 bp):
GCATACATACATCT
Found at i:51526399 original size:30 final size:30
Alignment explanation
Indices: 51526364--51526423 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
51526354 TATTTTATTA
51526364 TTAATTTTGTTATTATTTTAAAGGTATTTG
1 TTAATTTTGTTATTATTTTAAAGGTATTTG
*
51526394 TTAATTTTGTTATTATTTTAGAGGTATTTG
1 TTAATTTTGTTATTATTTTAAAGGTATTTG
51526424 CTTGTTAAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.25, C:0.00, G:0.15, T:0.60
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGTATTTG
Found at i:51533654 original size:160 final size:160
Alignment explanation
Indices: 51533388--51533701 Score: 529
Period size: 160 Copynumber: 2.0 Consensus size: 160
51533378 CTATCCATAT
* * *
51533388 TTACTTTTAGAGGATATAAAATTTATTACAATGCCTCCATGATTCTGGGGTACCAAATTTGTTAT
1 TTACTTTCAGAGGATATAAAATTCATTACAATGCCTCCATGATTCTAGGGTACCAAATTTGTTAT
* *
51533453 TTCTTATTAACTTACATATAATTTACCTTAGAATTTAACAAACACAAATATGAGTTGCAATGAAA
66 TTCTTATTAACTTACATACAATTTACCTTAGAATGTAACAAACACAAATATGAGTTGCAATGAAA
*
51533518 ATTTGTGGTTTCTTATTAACTTACTGCTTG
131 ATTTGTAGTTTCTTATTAACTTACTGCTTG
* *
51533548 TTACTTTCAGGGGATATAAAATTCATTACAATGCCTCCATGATTTTAGGGTACCAAATTTGTTAT
1 TTACTTTCAGAGGATATAAAATTCATTACAATGCCTCCATGATTCTAGGGTACCAAATTTGTTAT
* * *
51533613 TTTTTATTAACTTACGTACAATTTACCTTAGAATGTAACAAACATAAATATGAGTTGCAATGAAA
66 TTCTTATTAACTTACATACAATTTACCTTAGAATGTAACAAACACAAATATGAGTTGCAATGAAA
51533678 ATTTGTAGTTTCTTATTAACTTAC
131 ATTTGTAGTTTCTTATTAACTTAC
51533702 GTACAATTTA
Statistics
Matches: 143, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
160 143 1.00
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (160 bp):
TTACTTTCAGAGGATATAAAATTCATTACAATGCCTCCATGATTCTAGGGTACCAAATTTGTTAT
TTCTTATTAACTTACATACAATTTACCTTAGAATGTAACAAACACAAATATGAGTTGCAATGAAA
ATTTGTAGTTTCTTATTAACTTACTGCTTG
Found at i:51533723 original size:74 final size:74
Alignment explanation
Indices: 51533602--51533764 Score: 229
Period size: 74 Copynumber: 2.2 Consensus size: 74
51533592 TTAGGGTACC
* * * *
51533602 AAATTTGTTATTTTTTATTAACTTACGTACAATTTACCTTAGAATGTAACAAACATAAATATGAG
1 AAATTTGTTATTTCTTATTAACTTACGTACAATTTAACTTAAAATGTAACAAACACAAATATGAG
*
51533667 TTGCAATGA
66 TTACAATGA
* * *
51533676 AAATTTG-TAGTTTCTTATTAACTTACGTACAATTTAAGTTAAAATGTAACAAAGACAAATATGG
1 AAATTTGTTA-TTTCTTATTAACTTACGTACAATTTAACTTAAAATGTAACAAACACAAATATGA
51533740 GTTACAATGA
65 GTTACAATGA
*
51533750 AAATTTATTATTTCT
1 AAATTTGTTATTTCT
51533765 ATGTTGATGT
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
73 2 0.03
74 74 0.95
75 2 0.03
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.39
Consensus pattern (74 bp):
AAATTTGTTATTTCTTATTAACTTACGTACAATTTAACTTAAAATGTAACAAACACAAATATGAG
TTACAATGA
Found at i:51540652 original size:19 final size:19
Alignment explanation
Indices: 51540615--51540652 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
51540605 TATACAACAC
**
51540615 AATGAATACAACACTAATA
1 AATGAATACAACAAAAATA
51540634 AATGAATACAACAAAAATA
1 AATGAATACAACAAAAATA
51540653 TCTAGAGCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.63, C:0.13, G:0.05, T:0.18
Consensus pattern (19 bp):
AATGAATACAACAAAAATA
Found at i:51548671 original size:41 final size:41
Alignment explanation
Indices: 51548626--51548707 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
51548616 GATTTGATAT
* *
51548626 TTTACATTTTATTTATTGGTACTTTATTGCAATATAAAAAA
1 TTTACATTTTATATATTGGTACTTTATTGCAACATAAAAAA
*
51548667 TTTACATTTTATATATTGGTACTTTATTTCAACATAAAAAA
1 TTTACATTTTATATATTGGTACTTTATTGCAACATAAAAAA
51548708 ATACTTCCCA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.48
Consensus pattern (41 bp):
TTTACATTTTATATATTGGTACTTTATTGCAACATAAAAAA
Found at i:51551980 original size:28 final size:29
Alignment explanation
Indices: 51551926--51551980 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
51551916 ATAGGGGTTT
* *
51551926 TCACATGGCCGAGCACATGCCTGTGTCCC
1 TCACACGGCCGAGCACACGCCTGTGTCCC
*
51551955 TCACACGGCCTAG-ACACGCCTGTGTC
1 TCACACGGCCGAGCACACGCCTGTGTC
51551981 ACGTGTCCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.18, C:0.38, G:0.24, T:0.20
Consensus pattern (29 bp):
TCACACGGCCGAGCACACGCCTGTGTCCC
Found at i:51554424 original size:26 final size:26
Alignment explanation
Indices: 51554395--51554476 Score: 128
Period size: 26 Copynumber: 3.2 Consensus size: 26
51554385 TGGTACAAAT
*
51554395 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
51554421 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
* *
51554447 TAATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
51554473 TGAT
1 TGAT
51554477 GGGCATTTCA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.37
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:51560504 original size:26 final size:26
Alignment explanation
Indices: 51560475--51560556 Score: 121
Period size: 26 Copynumber: 3.2 Consensus size: 26
51560465 TGGTACAAAT
*
51560475 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
51560501 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
51560527 T-AGTAATGGTTTAGGTAAATGTTCCA
1 TGA-TAATGGATTAGGTAAATGTTCCA
51560553 TGAT
1 TGAT
51560557 GGGCATTTCA
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.02
26 48 0.96
27 1 0.02
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:51566365 original size:55 final size:55
Alignment explanation
Indices: 51566278--51566534 Score: 234
Period size: 55 Copynumber: 4.8 Consensus size: 55
51566268 ATTAGGGTTT
* *
51566278 AAGGATACCATGTAAGGCCATGCCAAGGCATGGCAATTGGTAAGGTCTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTCTCTAAGGC
* * * * * *
51566333 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGT-CTCTAAGGC
* * * *
51566388 AAAGG-T-CTCATGTAAGACCATGCCATGGCAT-GCCATTGGTGA-GT-TCATAAGGC
1 -AAGGATAC-CATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTCTC-TAAGGC
* *
51566441 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAA-GTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTCTCTAAGGC
* * *
51566490 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGT
51566535 ACCCGCGTAT
Statistics
Matches: 167, Mismatches: 25, Indels: 25
0.77 0.12 0.12
Matches are distributed among these distances:
49 39 0.23
50 2 0.01
52 7 0.04
53 34 0.20
54 18 0.11
55 63 0.38
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (55 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTCTCTAAGGC
Found at i:51566463 original size:108 final size:110
Alignment explanation
Indices: 51566286--51566485 Score: 298
Period size: 108 Copynumber: 1.8 Consensus size: 110
51566276 TTAAGGATAC
* *
51566286 CATGTAAGGCCATGCCAAGGCATGGCAATTGGTAAGGTCTCTAAGGCAAGGAAATCATGTAAGAC
1 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTCTCTAAGGCAAGGAAACCATGTAAGAC
*
51566351 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCT
66 CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCT
* * * *
51566396 CATGTAAGACCATGCCATGGCAT-GCCATTGGTGA-GT-TCATAAGGCAAGGATACCATGTAAGA
1 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTCTC-TAAGGCAAGGAAACCATGTAAGA
*
51566458 CCATGTCAAGACATGGCAATGGTAAGTT
65 CCATGTCAAGACATGGCAATGATAAGTT
51566486 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 2 0.02
108 49 0.60
109 9 0.11
110 21 0.26
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.23
Consensus pattern (110 bp):
CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTCTCTAAGGCAAGGAAACCATGTAAGAC
CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCT
Found at i:51573207 original size:55 final size:54
Alignment explanation
Indices: 51573120--51573376 Score: 224
Period size: 55 Copynumber: 4.8 Consensus size: 54
51573110 ATTAGGGTTT
* * *
51573120 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTCTCTAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAAGGTCTCTAAGGA
* * * * * * *
51573175 AAGGAAATCATGTAAGACCATGTCAATACATGGCATTGATAAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGGT-CTCTAAGG-A
* * * * *
51573231 AAGG-TCCCAAGTAAGACCATGCCAAGGCATGGCATTGGTGA-GT-TCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGGTCTC-TAAGGA
* * *
51573283 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAA-GT-T-TCA--A
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGGTCTCTAAGGA
* * * *
51573332 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGGT
51573377 ACCCGAGTAT
Statistics
Matches: 164, Mismatches: 33, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
49 39 0.24
50 2 0.01
51 2 0.01
52 5 0.03
53 39 0.24
54 10 0.06
55 63 0.38
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGGTCTCTAAGGA
Found at i:51573326 original size:108 final size:110
Alignment explanation
Indices: 51573131--51573327 Score: 301
Period size: 108 Copynumber: 1.8 Consensus size: 110
51573121 AGGATACCGT
* *
51573131 GTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTCTCTAAGGTAAGGAAATCATGTAAGACCAT
1 GTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTCTCTAAGGCAAGGAAACCATGTAAGACCAT
* *
51573196 GTCAATACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCAA
66 GTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCAA
* *
51573241 GTAAGACCATGCCAAGGCATGGC-ATTGGTGA-GT-TCATAAGGCAAGGATACCATGTAAGACCA
1 GTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTCTC-TAAGGCAAGGAAACCATGTAAGACCA
*
51573303 TGTCAAGACATGGCAATGGTAAGTT
65 TGTCAAGACATGGCAATGATAAGTT
51573328 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 2 0.03
108 47 0.59
109 7 0.09
110 23 0.29
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
GTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTCTCTAAGGCAAGGAAACCATGTAAGACCAT
GTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCAA
Found at i:51607519 original size:6 final size:6
Alignment explanation
Indices: 51607508--51607534 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
51607498 TTAGCCTCTG
51607508 TTTCTT TTTCTT TTTCTT TTTCTT TTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTT
51607535 TAAATAGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTCTT
Found at i:51616188 original size:17 final size:17
Alignment explanation
Indices: 51616154--51616196 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
51616144 CCTCCTCCTT
* *
51616154 TTCTTTTTTACTTTTTC
1 TTCTTCTTTACTTCTTC
*
51616171 TTCTTCTTTGCTTCTTC
1 TTCTTCTTTACTTCTTC
*
51616188 TTTTTCTTT
1 TTCTTCTTT
51616197 TATTGCCTAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.02, C:0.21, G:0.02, T:0.74
Consensus pattern (17 bp):
TTCTTCTTTACTTCTTC
Found at i:51618149 original size:181 final size:181
Alignment explanation
Indices: 51617845--51618387 Score: 987
Period size: 181 Copynumber: 3.0 Consensus size: 181
51617835 GTATAAGGTT
*
51617845 TTGGAAAATGTTGATTCCTTCTAGTTAAACCTAGACAAAAAAAGTCACCCAAGTCCCTATTGACT
1 TTGGAAAATGTTGATTCATTCTAGTTAAACCTAGACAAAAAAAGTCACCCAAGTCCCTATTGACT
51617910 CCAGAAAGGTGAGTCATCATGGACCTAAGAAAACAAAAATCATTGTTGACTCGAAAAAACCTCAT
66 CCAGAAAGGTGAGTCATCATGGACCTAAGAAAACAAAAATCATTGTTGACTCGAAAAAACCTCAT
*
51617975 TCAAAAGAGGAACCAAGGGAAAAATCTTTGACCTAATTGTTGTTCCAAGCA
131 TCAAAAGAGGAACCAAGGGAAAAATCTTTGACCTAATTATTGTTCCAAGCA
* *
51618026 TTGGAAAATGATGATTCATTCTAGTTAAACCTAGACAAAAAAAGTCACCCAAGTCCTTATTGACT
1 TTGGAAAATGTTGATTCATTCTAGTTAAACCTAGACAAAAAAAGTCACCCAAGTCCCTATTGACT
*
51618091 CCAGAAAGGTGAGTCATCAAGGACCTAAGAAAACAAAAATCATTGTTGACTCGAAAAAACCTCAT
66 CCAGAAAGGTGAGTCATCATGGACCTAAGAAAACAAAAATCATTGTTGACTCGAAAAAACCTCAT
*
51618156 TCAAAAGAGGAACCAAGGGAAAATTCTTTGACCTAATTATTGTTCCAAGCA
131 TCAAAAGAGGAACCAAGGGAAAAATCTTTGACCTAATTATTGTTCCAAGCA
51618207 TTGGAAAATGTTGATTCATTCTAGTTAAACCTAGACAAAAAAAGTCACCCAAGTCCCTATTGACT
1 TTGGAAAATGTTGATTCATTCTAGTTAAACCTAGACAAAAAAAGTCACCCAAGTCCCTATTGACT
* *
51618272 CCAGAGAGGTGAGTCATCATGAACCTAAGAAAACAAAAATCATTGTTGACTCGAAAAAACCTCAT
66 CCAGAAAGGTGAGTCATCATGGACCTAAGAAAACAAAAATCATTGTTGACTCGAAAAAACCTCAT
* * *
51618337 TCAAAAGAGGAACCAAGGGAAAAGTCTTTAACGTAATTATTGTTCCAAGCA
131 TCAAAAGAGGAACCAAGGGAAAAATCTTTGACCTAATTATTGTTCCAAGCA
51618388 ATCACTTGCA
Statistics
Matches: 348, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
181 348 1.00
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.24
Consensus pattern (181 bp):
TTGGAAAATGTTGATTCATTCTAGTTAAACCTAGACAAAAAAAGTCACCCAAGTCCCTATTGACT
CCAGAAAGGTGAGTCATCATGGACCTAAGAAAACAAAAATCATTGTTGACTCGAAAAAACCTCAT
TCAAAAGAGGAACCAAGGGAAAAATCTTTGACCTAATTATTGTTCCAAGCA
Found at i:51620116 original size:8 final size:8
Alignment explanation
Indices: 51620105--51620156 Score: 81
Period size: 8 Copynumber: 6.8 Consensus size: 8
51620095 ATATATTAAT
51620105 TTATATTA
1 TTATATTA
51620113 TTATATTA
1 TTATATTA
51620121 TTATATTA
1 TTATATTA
*
51620129 TTACATTA
1 TTATATTA
51620137 -TATA-TA
1 TTATATTA
51620143 TTATATTA
1 TTATATTA
51620151 TTATAT
1 TTATAT
51620157 ATATAAGTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
6 2 0.05
7 7 0.17
8 31 0.77
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (8 bp):
TTATATTA
Found at i:51621255 original size:58 final size:58
Alignment explanation
Indices: 51621159--51621276 Score: 164
Period size: 58 Copynumber: 2.0 Consensus size: 58
51621149 AAATTTAGTG
* * * *
51621159 ATTGGTAGCAATTCCGCATAAGTTGTGGGCTACCGTAGCTTTGTGTAAGCATTGATGT
1 ATTGGTAGCAATTCCGCATAAGTTGCGGACTACCGTAGCTCTGTGTAAGCATTGAAGT
* ** *
51621217 ATTGGTAGTAATTCCGCATAAGTTGCGGACTATTGTAGCTCTGTGTGAGCATTGAAGT
1 ATTGGTAGCAATTCCGCATAAGTTGCGGACTACCGTAGCTCTGTGTAAGCATTGAAGT
51621275 AT
1 AT
51621277 ATGATTTACC
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
58 52 1.00
ACGTcount: A:0.24, C:0.14, G:0.27, T:0.35
Consensus pattern (58 bp):
ATTGGTAGCAATTCCGCATAAGTTGCGGACTACCGTAGCTCTGTGTAAGCATTGAAGT
Found at i:51626038 original size:8 final size:8
Alignment explanation
Indices: 51626020--51626060 Score: 73
Period size: 8 Copynumber: 5.0 Consensus size: 8
51626010 AAGCAAATTA
51626020 TGTGTATTT
1 TGTG-ATTT
51626029 TGTGATTT
1 TGTGATTT
51626037 TGTGATTT
1 TGTGATTT
51626045 TGTGATTT
1 TGTGATTT
51626053 TGTGATTT
1 TGTGATTT
51626061 AGGGAGTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 28 0.88
9 4 0.12
ACGTcount: A:0.12, C:0.00, G:0.24, T:0.63
Consensus pattern (8 bp):
TGTGATTT
Found at i:51630103 original size:16 final size:16
Alignment explanation
Indices: 51630084--51630114 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51630074 CTTCTTCACT
51630084 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
51630100 TACTTACTTACTTAA
1 TACTCACTTACTTAA
51630115 TCAAATTCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:51630120 original size:20 final size:20
Alignment explanation
Indices: 51630081--51630120 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
51630071 AAACTTCTTC
* *
51630081 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
51630101 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
51630121 TCACTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:51630496 original size:55 final size:53
Alignment explanation
Indices: 51630366--51630560 Score: 214
Period size: 55 Copynumber: 3.6 Consensus size: 53
51630356 TTACCATTGT
*
51630366 CATGTCTCGACATGGTCTTACATGGTATCC-TTGCCTTATGAACTCACCAATGC
1 CATGTCTTGACATGGTCTTACATGGTA-CCTTTGCCTTATGAACTCACCAATGC
* * * * *
51630419 CATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTTATCAATGC
1 CATGTCTTGACATGGTCTTACATGGTACCTTTGCCTTAT-G-AACTCACCAATGC
* *
51630474 TATGTCTTGACATGGTCTTACATGGTACCTTTGCCTTA-GAAACCTTACCAATTGC
1 CATGTCTTGACATGGTCTTACATGGTACCTTTGCCTTATG-AA-CTCACCAA-TGC
* * *
51630529 CATGCCTTGGCATTGTCTTACATGGTATCCTT
1 CATGTCTTGACATGGTCTTACATGGTA-CCTT
51630561 AAACCCTAAT
Statistics
Matches: 120, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
52 2 0.02
53 35 0.29
54 8 0.07
55 71 0.59
56 4 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
CATGTCTTGACATGGTCTTACATGGTACCTTTGCCTTATGAACTCACCAATGC
Found at i:51632141 original size:93 final size:93
Alignment explanation
Indices: 51632029--51632200 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
51632019 GCCCATAAGC
* *
51632029 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
51632094 CTAGCTCGGATGCCTAGTTACATCTCAA
66 CGAGCTCGGATGCCTAGTTACATCTCAA
* *
51632122 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
51632187 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
51632201 CAAATATCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAA
Found at i:51632196 original size:46 final size:46
Alignment explanation
Indices: 51632021--51632196 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
51632011 TGTAACCCGC
* * *
51632021 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
51632067 CCATAAGTGAACTCAGACTCAACTCAACTAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
*
51632117 -C-TCAA--GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCAT-AAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
51632160 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
51632197 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 4 0.04
45 1 0.01
46 62 0.57
47 26 0.24
48 1 0.01
49 4 0.04
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:51634329 original size:22 final size:23
Alignment explanation
Indices: 51634304--51634349 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
51634294 CAACCAAATC
51634304 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
51634326 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
51634349 A
1 A
51634350 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:51634355 original size:23 final size:23
Alignment explanation
Indices: 51634311--51634355 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
51634301 ATCAATTCAA
*
51634311 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
51634334 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
51634356 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:51636386 original size:25 final size:25
Alignment explanation
Indices: 51636358--51636409 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
51636348 AATTTCATCC
51636358 ATGAAATCAAAAACTAATGAATTTA
1 ATGAAATCAAAAACTAATGAATTTA
51636383 ATGAAATCAAAAACTAATGAATTTA
1 ATGAAATCAAAAACTAATGAATTTA
51636408 AT
1 AT
51636410 AGTAGGACCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.29
Consensus pattern (25 bp):
ATGAAATCAAAAACTAATGAATTTA
Found at i:51638692 original size:21 final size:20
Alignment explanation
Indices: 51638638--51638683 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
51638628 CTAGCTCATA
*
51638638 ATCTTTAATCAAATCTAGCC
1 ATCTTTAATCAACTCTAGCC
51638658 ATCTTTAATCAACTCTAGCC
1 ATCTTTAATCAACTCTAGCC
51638678 ATCTTT
1 ATCTTT
51638684 GCCTCAACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.04, T:0.39
Consensus pattern (20 bp):
ATCTTTAATCAACTCTAGCC
Found at i:51643467 original size:55 final size:52
Alignment explanation
Indices: 51643300--51643497 Score: 211
Period size: 55 Copynumber: 3.7 Consensus size: 52
51643290 AACTTGACAT
* *
51643300 TGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATGAA-TTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAACTT-ATCAA
* *
51643353 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCC-T-TAG-AACTTATCAA
* * *
51643408 TGCCATGTCTTGACATGGTCTTACATGGTGTCCTTGCCTTAGAAACCTTACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAG-AA-CTTATCAA
* **
51643462 TTGCCATGCCTTGGCATGAACTTACATGGTATCCTT
1 -TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
51643498 AAACCCTAAT
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
52 2 0.02
53 36 0.30
54 10 0.08
55 70 0.57
56 4 0.03
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.35
Consensus pattern (52 bp):
TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAACTTATCAA
Found at i:51649272 original size:8 final size:8
Alignment explanation
Indices: 51649254--51649286 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
51649244 AAGCAAATTA
51649254 TGTGTATTT
1 TGTG-ATTT
51649263 TGTGATTT
1 TGTGATTT
51649271 TGTGATTT
1 TGTGATTT
51649279 TGTGATTT
1 TGTGATTT
51649287 AGGGAGTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 20 0.83
9 4 0.17
ACGTcount: A:0.12, C:0.00, G:0.24, T:0.64
Consensus pattern (8 bp):
TGTGATTT
Found at i:51649696 original size:26 final size:26
Alignment explanation
Indices: 51649667--51649720 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
51649657 ATACCGACTT
51649667 AGCTTCCGCTAATTGAGATGGCACTA
1 AGCTTCCGCTAATTGAGATGGCACTA
51649693 AGCTTCCGCTAATTGAGATGGCACTA
1 AGCTTCCGCTAATTGAGATGGCACTA
51649719 AG
1 AG
51649721 TGTGCGGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (26 bp):
AGCTTCCGCTAATTGAGATGGCACTA
Found at i:51652688 original size:24 final size:24
Alignment explanation
Indices: 51652660--51652706 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
51652650 CTATTAAAAC
51652660 GTGATTGATAATTAATCATTAATG
1 GTGATTGATAATTAATCATTAATG
* *
51652684 GTGATTGTTTATTAATCATTAAT
1 GTGATTGATAATTAATCATTAAT
51652707 TTTTTTATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
GTGATTGATAATTAATCATTAATG
Found at i:51653097 original size:13 final size:13
Alignment explanation
Indices: 51653079--51653105 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
51653069 TATATAATCG
51653079 TGTGTATATATAT
1 TGTGTATATATAT
51653092 TGTGTATATATAT
1 TGTGTATATATAT
51653105 T
1 T
51653106 ATATGCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.56
Consensus pattern (13 bp):
TGTGTATATATAT
Found at i:51653903 original size:23 final size:23
Alignment explanation
Indices: 51653877--51653921 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
51653867 TATACTAAAT
**
51653877 ATATATATTTTTTATTTTTAATC
1 ATATATACATTTTATTTTTAATC
*
51653900 ATATTTACATTTTATTTTTAAT
1 ATATATACATTTTATTTTTAAT
51653922 TTTAACATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (23 bp):
ATATATACATTTTATTTTTAATC
Found at i:51659108 original size:20 final size:21
Alignment explanation
Indices: 51659083--51659127 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
51659073 AATTCAAAAA
51659083 TTTTTATAAA-TATTTTG-AAT
1 TTTTTA-AAATTATTTTGCAAT
51659103 TTTTTAAAATTATTTTGCAAT
1 TTTTTAAAATTATTTTGCAAT
51659124 TTTT
1 TTTT
51659128 GTTGGAAGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 3 0.13
20 13 0.57
21 7 0.30
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.62
Consensus pattern (21 bp):
TTTTTAAAATTATTTTGCAAT
Found at i:51661215 original size:3 final size:3
Alignment explanation
Indices: 51661207--51661232 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
51661197 TATGTTAACT
51661207 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
51661233 GGTAGATAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:51661606 original size:14 final size:14
Alignment explanation
Indices: 51661587--51661621 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
51661577 TGTTTGATTG
*
51661587 AAAATGGTTTCTAA
1 AAAATGATTTCTAA
*
51661601 AAAATGATTTCTGA
1 AAAATGATTTCTAA
51661615 AAAATGA
1 AAAATGA
51661622 CTTACTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.49, C:0.06, G:0.14, T:0.31
Consensus pattern (14 bp):
AAAATGATTTCTAA
Found at i:51662536 original size:134 final size:134
Alignment explanation
Indices: 51662296--51662563 Score: 527
Period size: 134 Copynumber: 2.0 Consensus size: 134
51662286 TGGAGACATT
51662296 ATTAACTAACATTAGATAAAAATACCCGATCAGCAAATAAACTCTCCTTTTTGTTTGTTTTGAAT
1 ATTAACTAACATTAGATAAAAATACCCGATCAGCAAATAAACTCTCCTTTTTGTTTGTTTTGAAT
51662361 AACGCCAATTGGAACTCCTCCTGTCAAATAGTAATACAAATAAAACTTAAATACTACAAATATGA
66 AACGCCAATTGGAACTCCTCCTGTCAAATAGTAATACAAATAAAACTTAAATACTACAAATATGA
51662426 GAGG
131 GAGG
51662430 ATTAACTAACATTAGATAAAAATACCCGATCAGCAAATAAACTCTCCTTTTTGTTTGTTTTGAAT
1 ATTAACTAACATTAGATAAAAATACCCGATCAGCAAATAAACTCTCCTTTTTGTTTGTTTTGAAT
*
51662495 AACGCCAATTGGAACTCCTCCTGTCAAATAGTAATACAAATAAAAGTTAAATACTACAAATATGA
66 AACGCCAATTGGAACTCCTCCTGTCAAATAGTAATACAAATAAAACTTAAATACTACAAATATGA
51662560 GAGG
131 GAGG
51662564 GAAAGAACCA
Statistics
Matches: 133, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
134 133 1.00
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.30
Consensus pattern (134 bp):
ATTAACTAACATTAGATAAAAATACCCGATCAGCAAATAAACTCTCCTTTTTGTTTGTTTTGAAT
AACGCCAATTGGAACTCCTCCTGTCAAATAGTAATACAAATAAAACTTAAATACTACAAATATGA
GAGG
Found at i:51676548 original size:2 final size:2
Alignment explanation
Indices: 51676543--51676577 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
51676533 TATATATATA
* *
51676543 TG TG TG TG TG TG TG TG TG TG TG TG CG CG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
51676578 TTTAAATATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.06, G:0.49, T:0.46
Consensus pattern (2 bp):
TG
Found at i:51677989 original size:25 final size:27
Alignment explanation
Indices: 51677931--51677990 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 27
51677921 TTTTAAAATG
51677931 TTAATGAATAATTATGTTAGTTATATCT
1 TTAATG-ATAATTATGTTAGTTATATCT
* * *
51677959 TAAATGATTATTATG-T-GTTATATGT
1 TTAATGATAATTATGTTAGTTATATCT
51677984 TTAATGA
1 TTAATGA
51677991 GATTAAATGA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 14 0.50
26 1 0.04
27 8 0.29
28 5 0.18
ACGTcount: A:0.35, C:0.02, G:0.13, T:0.50
Consensus pattern (27 bp):
TTAATGATAATTATGTTAGTTATATCT
Found at i:51677994 original size:27 final size:29
Alignment explanation
Indices: 51677931--51677995 Score: 68
Period size: 27 Copynumber: 2.4 Consensus size: 29
51677921 TTTTAAAATG
*
51677931 TTAATGA-ATAATTATGTTAGTTATATCT
1 TTAATGAGATTATTATGTTAGTTATATCT
* *
51677959 TAAAT--GATTATTATG-T-GTTATATGT
1 TTAATGAGATTATTATGTTAGTTATATCT
51677984 TTAATGAGATTA
1 TTAATGAGATTA
51677996 AATGATTATG
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
25 12 0.40
26 1 0.03
27 13 0.43
28 4 0.13
ACGTcount: A:0.35, C:0.02, G:0.14, T:0.49
Consensus pattern (29 bp):
TTAATGAGATTATTATGTTAGTTATATCT
Found at i:51686311 original size:64 final size:64
Alignment explanation
Indices: 51686230--51686413 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
51686220 AGACATTATG
* *
51686230 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
** * * * * *
51686294 ATGTAGCTAGGTCGCATGCATGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
51686359 AA
63 AA
* * * *
51686361 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
51686414 CGAACTATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 20 0.21
65 8 0.08
66 15 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:51689607 original size:11 final size:11
Alignment explanation
Indices: 51689591--51689616 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
51689581 GGATGAAAGA
51689591 TATTCTGCAGT
1 TATTCTGCAGT
51689602 TATTCTGCAGT
1 TATTCTGCAGT
51689613 TATT
1 TATT
51689617 ATCTTGACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.50
Consensus pattern (11 bp):
TATTCTGCAGT
Found at i:51705794 original size:43 final size:43
Alignment explanation
Indices: 51705728--51705814 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
51705718 AGGAAGTGAA
* *
51705728 TTAGTCATCATATTTTCAAGATTTTCATAAGTACTAATTTTGC
1 TTAGTCATCATATCTGCAAGATTTTCATAAGTACTAATTTTGC
* *
51705771 TTAGTCATCATATCTGCAGGATTTTCATGAGTACTAATTTTGC
1 TTAGTCATCATATCTGCAAGATTTTCATAAGTACTAATTTTGC
51705814 T
1 T
51705815 CACAACAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.45
Consensus pattern (43 bp):
TTAGTCATCATATCTGCAAGATTTTCATAAGTACTAATTTTGC
Found at i:51710040 original size:23 final size:23
Alignment explanation
Indices: 51710012--51710060 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
51710002 TTTATTTAAA
51710012 TAAGGATTCGGGTCATTTAATTC
1 TAAGGATTCGGGTCATTTAATTC
51710035 TAAGGATTCGGGTCATTTAATTC
1 TAAGGATTCGGGTCATTTAATTC
51710058 TAA
1 TAA
51710061 CATAAATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (23 bp):
TAAGGATTCGGGTCATTTAATTC
Found at i:51712169 original size:17 final size:17
Alignment explanation
Indices: 51712144--51712190 Score: 76
Period size: 17 Copynumber: 2.8 Consensus size: 17
51712134 AAGGCCAATC
*
51712144 TGGGTGTGTGGGCTACA
1 TGGGCGTGTGGGCTACA
51712161 TGGGCGTGTGGGCTACA
1 TGGGCGTGTGGGCTACA
*
51712178 CGGGCGTGTGGGC
1 TGGGCGTGTGGGC
51712191 CTATATAGGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.09, C:0.17, G:0.51, T:0.23
Consensus pattern (17 bp):
TGGGCGTGTGGGCTACA
Found at i:51714997 original size:16 final size:16
Alignment explanation
Indices: 51714969--51715001 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
51714959 TCTATTTTGA
51714969 AAATTGTATAAAATAT
1 AAATTGTATAAAATAT
51714985 AAATT-TATAAAAATAT
1 AAATTGTAT-AAAATAT
51715001 A
1 A
51715002 TAAAAGAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.19
16 13 0.81
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
AAATTGTATAAAATAT
Found at i:51739609 original size:47 final size:47
Alignment explanation
Indices: 51739490--51739667 Score: 200
Period size: 47 Copynumber: 3.8 Consensus size: 47
51739480 ATAATTTCAC
* *
51739490 CCATAATGAACTCGGAACGCAACTCAACGAGCTCGGGTG-TTCACAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCACAT
* * * *
51739536 CCATAATGAACTCGGAACACAACTCAACAAGTTCGAATGCTT-GCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCACAT
* * * *
51739582 CCATAAGTGAACTCAGAATGCAACTCAACGAGTTCGGATGCCTCATAAT
1 CCATAA-TGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCA-CAT
* * *
51739631 TC-TCACGAACTCGGAACGCAACTCAACGAGTTCGGAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGAT
51739668 CTCAATTTCC
Statistics
Matches: 109, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
46 43 0.39
47 61 0.56
48 2 0.02
49 3 0.03
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (47 bp):
CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCACAT
Found at i:51743425 original size:79 final size:82
Alignment explanation
Indices: 51743314--51743498 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
51743304 GCTACTCGTT
* * *
51743314 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
51743377 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
51743394 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
51743457 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
51743474 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51743499 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:51743498 original size:40 final size:40
Alignment explanation
Indices: 51743295--51743498 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
51743285 CGGAATTTAA
** *
51743295 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
51743335 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
51743375 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51743414 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
51743454 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
51743494 CCGGA
1 CCGGA
51743499 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:51747731 original size:47 final size:47
Alignment explanation
Indices: 51747662--51747775 Score: 183
Period size: 47 Copynumber: 2.4 Consensus size: 47
51747652 CCCTTCAGGA
* *
51747662 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCACTCGGC
*
51747709 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCACTCGGC
* *
51747756 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
51747776 GTACATCAAT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 62 1.00
ACGTcount: A:0.28, C:0.31, G:0.07, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCACTCGGC
Found at i:51748405 original size:20 final size:20
Alignment explanation
Indices: 51748380--51748419 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
51748370 CCACGGTCTC
51748380 TTTTATAAGAAACTAGACTA
1 TTTTATAAGAAACTAGACTA
51748400 TTTTATAAGAAACTAGACTA
1 TTTTATAAGAAACTAGACTA
51748420 ACTAAGCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (20 bp):
TTTTATAAGAAACTAGACTA
Found at i:51751848 original size:40 final size:40
Alignment explanation
Indices: 51751789--51752000 Score: 248
Period size: 40 Copynumber: 5.3 Consensus size: 40
51751779 CATTTGAATG
* *
51751789 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
51751829 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
51751869 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * * * * *
51751909 TTATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
51751949 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
51751989 ATATCC-GGCTAA
1 ATATCCGGGCTAA
51752001 ATTCCGAAGA
Statistics
Matches: 140, Mismatches: 30, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
39 8 0.06
40 130 0.93
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:51751929 original size:80 final size:79
Alignment explanation
Indices: 51751793--51752009 Score: 310
Period size: 80 Copynumber: 2.7 Consensus size: 79
51751783 TGAATGATAT
* *
51751793 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCC-GGCTAAGATCCGAAGGCATTTG
* *
51751858 TGCGAGTTGCTATAC
65 TGCGAGTTACTAAAC
*
51751873 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGG-CTAAGATCCGAAGGCATTTG
*
51751938 TGCGAGTTACTAAAT
65 TGCGAGTTACTAAAC
* * * *
51751953 CCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTATATCCGGCTAA-ATTCCGAAG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGCTAAGA-TCCGAAG
51752010 AAACTTGGGT
Statistics
Matches: 124, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 13 0.10
80 110 0.89
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGCTAAGATCCGAAGGCATTTGT
GCGAGTTACTAAAC
Found at i:51759913 original size:40 final size:40
Alignment explanation
Indices: 51759854--51760065 Score: 248
Period size: 40 Copynumber: 5.3 Consensus size: 40
51759844 CATTTGAATG
* *
51759854 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
51759894 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
51759934 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * * * * *
51759974 TTATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
51760014 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
51760054 ATATCC-GGCTAA
1 ATATCCGGGCTAA
51760066 ATTCCGAAGA
Statistics
Matches: 140, Mismatches: 30, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
39 8 0.06
40 130 0.93
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:51759994 original size:80 final size:79
Alignment explanation
Indices: 51759858--51760074 Score: 310
Period size: 80 Copynumber: 2.7 Consensus size: 79
51759848 TGAATGATAT
* *
51759858 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCC-GGCTAAGATCCGAAGGCATTTG
* *
51759923 TGCGAGTTGCTATAC
65 TGCGAGTTACTAAAC
*
51759938 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGG-CTAAGATCCGAAGGCATTTG
*
51760003 TGCGAGTTACTAAAT
65 TGCGAGTTACTAAAC
* * * *
51760018 CCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTATATCCGGCTAA-ATTCCGAAG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGCTAAGA-TCCGAAG
51760075 AAACTTGGTT
Statistics
Matches: 124, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 13 0.10
80 110 0.89
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGCTAAGATCCGAAGGCATTTGT
GCGAGTTACTAAAC
Found at i:51769370 original size:20 final size:21
Alignment explanation
Indices: 51769345--51769386 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
51769335 TTCTGGGATC
51769345 ATTTT-GAAACAAAA-TTGAAA
1 ATTTTGGAAA-AAAACTTGAAA
51769365 ATTTTGGAAAAAAACTTGAAA
1 ATTTTGGAAAAAAACTTGAAA
51769386 A
1 A
51769387 CAAGGGTCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.55, C:0.05, G:0.12, T:0.29
Consensus pattern (21 bp):
ATTTTGGAAAAAAACTTGAAA
Found at i:51771179 original size:40 final size:41
Alignment explanation
Indices: 51771079--51771176 Score: 162
Period size: 40 Copynumber: 2.4 Consensus size: 41
51771069 ATTTCTATCA
*
51771079 TTTTCGACCTTTTCATTTGATATCCTTTCCGGATAACATCC
1 TTTTCAACCTTTTCATTTGATATCCTTTCCGGATAACATCC
*
51771120 -TTTCAACCTTTTCATTTGATATCCTTTTCGGATAACATCC
1 TTTTCAACCTTTTCATTTGATATCCTTTCCGGATAACATCC
*
51771160 TTTTCAACCCTTTCATT
1 TTTTCAACCTTTTCATT
51771177 GATTCAAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
40 38 0.72
41 15 0.28
ACGTcount: A:0.20, C:0.27, G:0.07, T:0.46
Consensus pattern (41 bp):
TTTTCAACCTTTTCATTTGATATCCTTTCCGGATAACATCC
Found at i:51776211 original size:19 final size:20
Alignment explanation
Indices: 51776187--51776225 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
51776177 TGCTTGTACG
51776187 GTTTGTAC-ATCGTGCCTCT
1 GTTTGTACTATCGTGCCTCT
*
51776206 GTTTGTACTTTCGTGCCTCT
1 GTTTGTACTATCGTGCCTCT
51776226 ATTACACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.08, C:0.26, G:0.21, T:0.46
Consensus pattern (20 bp):
GTTTGTACTATCGTGCCTCT
Found at i:51798298 original size:5 final size:5
Alignment explanation
Indices: 51798288--51798315 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
51798278 ATAATTTGAT
51798288 AAATA AAATA AAATA AAATA AAATA AAA
1 AAATA AAATA AAATA AAATA AAATA AAA
51798316 GGAAAAGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAATA
Found at i:51799237 original size:25 final size:25
Alignment explanation
Indices: 51799199--51799264 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
51799189 GATTCTCAGG
*
51799199 TCGAGAGAGCTTACTGATATTTAGC
1 TCGAGAGAGCTTACCGATATTTAGC
** *
51799224 TCGAGAGATTTTACCGGTATTTAGC
1 TCGAGAGAGCTTACCGATATTTAGC
*
51799249 TCGCA-TGAGCTTACCG
1 TCG-AGAGAGCTTACCG
51799265 TTACTCAACT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
25 32 0.97
26 1 0.03
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (25 bp):
TCGAGAGAGCTTACCGATATTTAGC
Found at i:51801018 original size:24 final size:24
Alignment explanation
Indices: 51800990--51801050 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
51800980 AACCGTATTT
* * *
51800990 GCACACATAGTGCTA-ATTACACTC
1 GCACACATAGTGCCATAGTAAAC-C
51801014 GCACACATAGTGCCATAGTAAACC
1 GCACACATAGTGCCATAGTAAACC
51801038 GCACACATAGTGC
1 GCACACATAGTGC
51801051 ATTGGATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.34, C:0.30, G:0.16, T:0.20
Consensus pattern (24 bp):
GCACACATAGTGCCATAGTAAACC
Found at i:51805247 original size:47 final size:47
Alignment explanation
Indices: 51805169--51805625 Score: 698
Period size: 47 Copynumber: 9.6 Consensus size: 47
51805159 CCCTTCAGGA
* * * * * *
51805169 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51805216 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51805263 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51805310 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51805357 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51805406 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51805455 CTTATCACATATATACACTTTCACATTCGTCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51805502 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51805551 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51805600 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
51805626 CACAATTATC
Statistics
Matches: 383, Mismatches: 23, Indels: 8
0.93 0.06 0.02
Matches are distributed among these distances:
47 195 0.51
49 188 0.49
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51805390 original size:49 final size:49
Alignment explanation
Indices: 51805169--51805625 Score: 713
Period size: 49 Copynumber: 9.6 Consensus size: 49
51805159 CCCTTCAGGA
* * * * *
51805169 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51805216 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51805263 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51805310 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51805357 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51805406 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51805455 CTTATCAC--ATATATACACTTTCACATTCGTCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51805502 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51805551 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51805600 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
51805626 CACAATTATC
Statistics
Matches: 384, Mismatches: 20, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 184 0.48
49 199 0.52
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51805477 original size:145 final size:145
Alignment explanation
Indices: 51805169--51805625 Score: 751
Period size: 145 Copynumber: 3.2 Consensus size: 145
51805159 CCCTTCAGGA
* * * * * * * *
51805169 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
51805232 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC--ATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
* *
51805295 CATCGGCTATTAGGC
131 CATCGGCCATTCGGC
51805310 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
51805375 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
*
51805440 CATTGGCCATTCGGC
131 CATCGGCCATTCGGC
*
51805455 CTTATCACATATATACACTTTCACATTCGTCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
51805520 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
51805585 CATCGGCCATTCGGC
131 CATCGGCCATTCGGC
* *
51805600 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
51805626 CACAATTATC
Statistics
Matches: 296, Mismatches: 16, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
141 47 0.16
143 46 0.16
145 203 0.69
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (145 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
CATCGGCCATTCGGC
Found at i:51808930 original size:48 final size:48
Alignment explanation
Indices: 51808855--51809076 Score: 208
Period size: 48 Copynumber: 4.7 Consensus size: 48
51808845 CACATGGTAG
* * * * *
51808855 GATGTCAATGCCATATCCCGGATATGGTCTTACATTGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
*** **
51808903 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATTGTAGGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
51808951 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * ** * *
51808999 GATG-C--TG--ATAG-CCCAG-CTATGGTCTTATACGAAATTACATATA
1 GATGCCAATGCCAT-GTCCCAGAC-ATGGTCTTACATGGGATCACATATC
*
51809042 GATGCCAAAT-CCATGTCACAGACATGGTCTTACAT
1 GATGCC-AATGCCATGTCCCAGACATGGTCTTACAT
51809077 AAGATTGTAC
Statistics
Matches: 140, Mismatches: 24, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
42 1 0.01
43 30 0.21
44 2 0.01
45 2 0.01
47 3 0.02
48 101 0.72
49 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Done.