Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 162 of 333
Found at i:53295308 original size:12 final size:13
Alignment explanation
Indices: 53295279--53295303 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
53295269 TATCTATATT
53295279 AAAATTCATTTCA
1 AAAATTCATTTCA
53295292 AAAATTCATTTC
1 AAAATTCATTTC
53295304 CAAATACCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (13 bp):
AAAATTCATTTCA
Found at i:53296816 original size:25 final size:24
Alignment explanation
Indices: 53296788--53296858 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 24
53296778 CCTCTTTTAA
*
53296788 TAACTGGGTCAAAGCCCTTTTTGAT
1 TAACTGGG-CAAAGCCCTTTTCGAT
*
53296813 TAACTGGGGCAAAGCCCTTTTCGGT
1 TAACT-GGGCAAAGCCCTTTTCGAT
*
53296838 AAACTAGGGCAAAGCCCTTTT
1 TAACT-GGGCAAAGCCCTTTT
53296859 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 38 0.93
26 3 0.07
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (24 bp):
TAACTGGGCAAAGCCCTTTTCGAT
Found at i:53297628 original size:75 final size:75
Alignment explanation
Indices: 53297505--53297652 Score: 251
Period size: 75 Copynumber: 2.0 Consensus size: 75
53297495 GCAACTACAT
* *
53297505 GGGGTATCGGTCTCTATTATATCTCATATGGATCCTTGATTTACGTCTCTATTTTGGAAGAAGTT
1 GGGGTATCGGTCTCTATTATATCTCACATGGATCCTTGATTTACGTCTCGATTTTGGAAGAAGTT
*
53297570 GGATGAAGTA
66 GCATGAAGTA
* *
53297580 GGGGTATCGGTCTCTATTATATTTCACATGGATCCTTGCTTTACGTCTCGATTTTGGAAGAAGTT
1 GGGGTATCGGTCTCTATTATATCTCACATGGATCCTTGATTTACGTCTCGATTTTGGAAGAAGTT
53297645 GCATGAAG
66 GCATGAAG
53297653 CATTGGGTAC
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 68 1.00
ACGTcount: A:0.23, C:0.15, G:0.24, T:0.38
Consensus pattern (75 bp):
GGGGTATCGGTCTCTATTATATCTCACATGGATCCTTGATTTACGTCTCGATTTTGGAAGAAGTT
GCATGAAGTA
Found at i:53301547 original size:54 final size:54
Alignment explanation
Indices: 53301489--53301713 Score: 168
Period size: 54 Copynumber: 4.2 Consensus size: 54
53301479 AAAATTTCCA
* *
53301489 AAATACCCTCGATTAGCAAAATTACCAAAATACCCTTGATTTGTGAAATTACTG
1 AAATACCCTCGATTAGCAAAATTACCAAAATACCCTTAATTTGTAAAATTACTG
* * * * * * **
53301543 AAATACTCTCGA-CATGTAAAAATA-CGAAATACCCTTGACCTGTAAAATTAACT-
1 AAATACCCTCGATTA-GCAAAATTACCAAAATACCCTTAATTTGTAAAATT-ACTG
** * * * * **
53301596 AAATACCCTTAATTTGCAAAATTACCGAAATACCCCTAATTTGGAAAATTACCA
1 AAATACCCTCGATTAGCAAAATTACCAAAATACCCTTAATTTGTAAAATTACTG
* * * * ** * *
53301650 AAATACCTTTGATTTGGAAAATTATAAAAATACCCTTAATTTATAAAATTACAG
1 AAATACCCTCGATTAGCAAAATTACCAAAATACCCTTAATTTGTAAAATTACTG
53301704 AAATAACCCT
1 AAAT-ACCCT
53301714 AATTTATAAA
Statistics
Matches: 132, Mismatches: 33, Indels: 11
0.75 0.19 0.06
Matches are distributed among these distances:
53 40 0.30
54 88 0.67
55 4 0.03
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.29
Consensus pattern (54 bp):
AAATACCCTCGATTAGCAAAATTACCAAAATACCCTTAATTTGTAAAATTACTG
Found at i:53301685 original size:81 final size:81
Alignment explanation
Indices: 53301596--53301792 Score: 220
Period size: 81 Copynumber: 2.4 Consensus size: 81
53301586 AAAATTAACT
53301596 AAATACCCTTAATTTGCAAAATTACCGAAATACCCCTAATTTGGA-AAATTACCA-AAATACCTT
1 AAATACCCTTAATTTGCAAAATTACCGAAATACCCCTAATTT--ATAAATTA-CAGAAATACCTT
**
53301659 TGA-TTTGGAAAATTATAA
63 TGACTTTCAAAAATTATAA
** * * *
53301677 AAATACCCTTAATTTATAAAATTACAGAAATAACCCTAATTTATAAATTACAGAATTACCTTTGA
1 AAATACCCTTAATTTGCAAAATTACCGAAATACCCCTAATTTATAAATTACAGAAATACCTTTGA
*
53301742 CTTTCAAAAATTATAG
66 CTTTCAAAAATTATAA
* * * * * *
53301758 AAATACCATGAGTTTGCAAAACTATCAAAATACCC
1 AAATACCCTTAATTTGCAAAATTACCGAAATACCC
53301793 TTGGTTTGTA
Statistics
Matches: 95, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
79 3 0.03
80 17 0.18
81 75 0.79
ACGTcount: A:0.45, C:0.17, G:0.07, T:0.31
Consensus pattern (81 bp):
AAATACCCTTAATTTGCAAAATTACCGAAATACCCCTAATTTATAAATTACAGAAATACCTTTGA
CTTTCAAAAATTATAA
Found at i:53301731 original size:26 final size:27
Alignment explanation
Indices: 53301429--53301764 Score: 138
Period size: 27 Copynumber: 12.5 Consensus size: 27
53301419 GTAGGCTAGT
* ** *
53301429 ATTACTGAAATACCCTTGGTTTATCAA
1 ATTACAGAAATACCCTTAATTTATAAA
* ** *
53301456 ATTAC-GGAATACCCTTGGTTTACAAA
1 ATTACAGAAATACCCTTAATTTATAAA
* ** *
53301482 ATTTCCA-AAATACCCTCGA-TTAGCAAA
1 A-TTACAGAAATACCCTTAATTTA-TAAA
* * *
53301509 ATTACCA-AAATACCCTTGATTTGTGAA
1 ATTA-CAGAAATACCCTTAATTTATAAA
* * * *
53301536 ATTACTGAAATACTCTCGACATGTA-AAA
1 ATTACAGAAATACCCT-TA-ATTTATAAA
* ** *
53301564 A-TAC-GAAATACCCTTGACCTGTAAA
1 ATTACAGAAATACCCTTAATTTATAAA
* **
53301589 ATTA-ACTAAATACCCTTAATTTGCAAA
1 ATTACA-GAAATACCCTTAATTTATAAA
* * **
53301616 ATTACCGAAATACCCCTAATTTGGAAA
1 ATTACAGAAATACCCTTAATTTATAAA
* * **
53301643 ATTACCA-AAATACCTTTGATTTGGAAA
1 ATTA-CAGAAATACCCTTAATTTATAAA
* *
53301670 ATTATAAAAATACCCTTAATTTATAAA
1 ATTACAGAAATACCCTTAATTTATAAA
53301697 ATTACAGAAATAACCC-TAATTTAT-AA
1 ATTACAGAAAT-ACCCTTAATTTATAAA
* * *
53301723 ATTACAGAATTACCTTTGACTTTCA-AAA
1 ATTACAGAAATACCCTT-AATTT-ATAAA
*
53301751 ATTATAGAAATACC
1 ATTACAGAAATACC
53301765 ATGAGTTTGC
Statistics
Matches: 239, Mismatches: 50, Indels: 39
0.73 0.15 0.12
Matches are distributed among these distances:
24 2 0.01
25 7 0.03
26 50 0.21
27 152 0.64
28 25 0.10
29 3 0.01
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (27 bp):
ATTACAGAAATACCCTTAATTTATAAA
Found at i:53302104 original size:41 final size:41
Alignment explanation
Indices: 53302059--53302164 Score: 176
Period size: 41 Copynumber: 2.6 Consensus size: 41
53302049 GGAGGAAGAA
*
53302059 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCAACTG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCAACCG
* *
53302100 ATTGAGGATCACATGGTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCAACCG
*
53302141 ATTAAGGATCGCATGGTTGCTTGA
1 ATTGAGGATCGCATGGTTGCTTGA
53302165 TGATTGTAGA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCAACCG
Found at i:53302361 original size:22 final size:21
Alignment explanation
Indices: 53302323--53302385 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 21
53302313 GCTAATTGTT
*
53302323 CTGATTATGGCATTGTGCCAAC
1 CTGAATATGGC-TTGTGCCAAC
53302345 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-ATATGGCT-TGTGCCAAC
*
53302367 CTGATTATGGCTGTGTGCC
1 CTGAATATGGCT-TGTGCC
53302386 GAACGTATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
21 2 0.06
22 32 0.91
23 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.24, T:0.32
Consensus pattern (21 bp):
CTGAATATGGCTTGTGCCAAC
Found at i:53305506 original size:27 final size:28
Alignment explanation
Indices: 53305468--53305537 Score: 85
Period size: 27 Copynumber: 2.6 Consensus size: 28
53305458 TCGATTAGCA
* * *
53305468 AAATTTA-AAAAATACCCCTGGTTTGT-
1 AAATTTACCAAAATACCCCTGATTTATG
53305494 AAATTTACCAAAATACCCCTGATTTATG
1 AAATTTACCAAAATACCCCTGATTTATG
53305522 AAA-TTACCAAAA-ACCC
1 AAATTTACCAAAATACCC
53305538 TCGACCTGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
26 11 0.28
27 25 0.64
28 3 0.08
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (28 bp):
AAATTTACCAAAATACCCCTGATTTATG
Found at i:53305600 original size:27 final size:26
Alignment explanation
Indices: 53305477--53305672 Score: 124
Period size: 27 Copynumber: 7.3 Consensus size: 26
53305467 AAAATTTAAA
* * *
53305477 AAATACCCCTGGTTTGTAAATTTACCA
1 AAATACCCCT-ATTTGTAAAATTACCG
* *
53305504 AAATACCCCTGATTTATGAAATTACC-
1 AAATACCCCT-ATTTGTAAAATTACCG
* * ** **
53305530 AAAAACCCTCGACCTGTAAAATTATTG
1 AAATACCC-CTATTTGTAAAATTACCG
* * *
53305557 AAATACCCTCAACTTGTAAAATTATCG
1 AAATACCC-CTATTTGTAAAATTACCG
*
53305584 AAATACCCGCTATTTGTAAAATTACCA
1 AAATACCC-CTATTTGTAAAATTACCG
* *
53305611 AAATACTCCTGATTTGGAAAATTACCG
1 AAATACCCCT-ATTTGTAAAATTACCG
* ** *
53305638 AAATACCCTTCACTTTAAAAAATTACAG
1 AAATACCCCT-A-TTTGTAAAATTACCG
53305666 AAATACC
1 AAATACC
53305673 ATGGGTTTGC
Statistics
Matches: 135, Mismatches: 30, Indels: 7
0.78 0.17 0.04
Matches are distributed among these distances:
26 18 0.13
27 98 0.73
28 19 0.14
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (26 bp):
AAATACCCCTATTTGTAAAATTACCG
Found at i:53306017 original size:41 final size:41
Alignment explanation
Indices: 53305972--53306049 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
53305962 GAAGAAATTG
* * *
53305972 AGGATCGCATGGTTGCTTAACGGCCGTGGATCCACTGATTA
1 AGGATCACACGGTTGCTTAACGACCGTGGATCCACTGATTA
* *
53306013 AGGATCACACGGTTGCTTGACGACTGTGGATCCACTG
1 AGGATCACACGGTTGCTTAACGACCGTGGATCCACTG
53306050 GTGGCTTTGA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (41 bp):
AGGATCACACGGTTGCTTAACGACCGTGGATCCACTGATTA
Found at i:53306225 original size:22 final size:22
Alignment explanation
Indices: 53306192--53306245 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
53306182 GCCAATTATT
*
53306192 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGCGCCAAC
*
53306214 CT-ATATATGGCTCTGTGCCAAC
1 CTGAT-TATGGCTCTGCGCCAAC
53306236 CTGATTATGG
1 CTGATTATGG
53306246 TTGTGTGCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 2 0.07
22 24 0.86
23 2 0.07
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.33
Consensus pattern (22 bp):
CTGATTATGGCTCTGCGCCAAC
Found at i:53306252 original size:22 final size:21
Alignment explanation
Indices: 53306192--53306256 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 21
53306182 GCCAATTATT
*
53306192 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGG-TTTGTGCCAAC
*
53306214 CT-ATATATGGCTCTGTGCCAAC
1 CTGAT-TATGG-TTTGTGCCAAC
53306236 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGTT-TGTGCCAA
53306257 ACGTATTGCC
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
21 3 0.08
22 32 0.86
23 2 0.05
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (21 bp):
CTGATTATGGTTTGTGCCAAC
Found at i:53309329 original size:27 final size:27
Alignment explanation
Indices: 53309287--53309343 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
53309277 AATCTCATAT
* *
53309287 TTGTAGGCTAGTATTACCGAAATACCC
1 TTGTAGGATAGAATTACCGAAATACCC
*
53309314 TTGTAGGATAGAATTACTGAAATACCC
1 TTGTAGGATAGAATTACCGAAATACCC
53309341 TTG
1 TTG
53309344 GTTTACAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.32
Consensus pattern (27 bp):
TTGTAGGATAGAATTACCGAAATACCC
Found at i:53309355 original size:27 final size:27
Alignment explanation
Indices: 53309333--53309420 Score: 106
Period size: 27 Copynumber: 3.3 Consensus size: 27
53309323 AGAATTACTG
**
53309333 AAATACCCTTGGTTTACAAAATTA-TT
1 AAATACCCTTGGTTTACAAAATTACCA
* *
53309359 GAATACCATTGGTTTACAAAATTACCA
1 AAATACCCTTGGTTTACAAAATTACCA
* **
53309386 AAATACCCCTGGTTTGTAAAATTACCA
1 AAATACCCTTGGTTTACAAAATTACCA
53309413 AAATACCC
1 AAATACCC
53309421 CTGATTTGTG
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
26 22 0.42
27 30 0.58
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATACCCTTGGTTTACAAAATTACCA
Found at i:53309421 original size:27 final size:27
Alignment explanation
Indices: 53309376--53309582 Score: 159
Period size: 27 Copynumber: 7.7 Consensus size: 27
53309366 ATTGGTTTAC
*
53309376 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
53309403 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * * * ** *
53309430 GAAATTATCGAAATACCCCCGACCTAT
1 AAAATTACCAAAATACCCCTGATTTGT
* * *
53309457 AAAATTATCGAACTA-CCCTCGACTTT-T
1 AAAATTACCAAAATACCCCT-GA-TTTGT
* * * * **
53309484 AAAATTATCGAGATA-CCCTCGACTAAT
1 AAAATTACCAAAATACCCCT-GATTTGT
*
53309511 AAAATTACCAAAATACCCCTGATTTGG
1 AAAATTACCAAAATACCCCTGATTTGT
* * *
53309538 AAAATTACCGAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* *
53309565 AGATTTACCAAAATACCC
1 AAAATTACCAAAATACCC
53309583 TTGTAGGGTG
Statistics
Matches: 145, Mismatches: 31, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
26 4 0.03
27 136 0.94
28 5 0.03
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:53310106 original size:22 final size:22
Alignment explanation
Indices: 53310047--53310110 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
53310037 CCAATTGTTT
*
53310047 TGATTATGGCTTTGCGCCAACC
1 TGATTATGGCTTTGTGCCAACC
* * *
53310069 T-ACATAT-GATTCTGTGCCAGCC
1 TGA-TTATGGCTT-TGTGCCAACC
53310091 TGATTATGGCTTTGTGCCAA
1 TGATTATGGCTTTGTGCCAA
53310111 ACGTATTTGC
Statistics
Matches: 31, Mismatches: 7, Indels: 8
0.67 0.15 0.17
Matches are distributed among these distances:
21 4 0.13
22 23 0.74
23 4 0.13
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.34
Consensus pattern (22 bp):
TGATTATGGCTTTGTGCCAACC
Found at i:53310340 original size:22 final size:22
Alignment explanation
Indices: 53310315--53310366 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
53310305 TACTACGATG
*
53310315 TTTATGGCTATATGCTGTCCTA
1 TTTACGGCTATATGCTGTCCTA
* * *
53310337 TTTACGGCTATGTGTTGTCCTG
1 TTTACGGCTATATGCTGTCCTA
53310359 TTTACGGC
1 TTTACGGC
53310367 CTTGAGTTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.13, C:0.19, G:0.23, T:0.44
Consensus pattern (22 bp):
TTTACGGCTATATGCTGTCCTA
Found at i:53310375 original size:22 final size:22
Alignment explanation
Indices: 53310313--53310382 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
53310303 ATTACTACGA
* *
53310313 TGTTTATGGCTAT-ATGCTGTCC
1 TGTTTACGGCTATGA-GTTGTCC
* *
53310335 TATTTACGGCTATGTGTTGTCC
1 TGTTTACGGCTATGAGTTGTCC
*
53310357 TGTTTACGGCCT-TGAGTTGTCT
1 TGTTTACGG-CTATGAGTTGTCC
53310379 TGTT
1 TGTT
53310383 GAGGTAGTAC
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
22 37 0.95
23 2 0.05
ACGTcount: A:0.11, C:0.17, G:0.24, T:0.47
Consensus pattern (22 bp):
TGTTTACGGCTATGAGTTGTCC
Found at i:53312404 original size:17 final size:17
Alignment explanation
Indices: 53312378--53312417 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
53312368 ATAATAACAA
* *
53312378 AATTTGTTCATTTCTTT
1 AATTTATTCATTTATTT
53312395 AATTTATTCATTTATTT
1 AATTTATTCATTTATTT
*
53312412 TATTTA
1 AATTTA
53312418 CCAAAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.25, C:0.07, G:0.03, T:0.65
Consensus pattern (17 bp):
AATTTATTCATTTATTT
Found at i:53314035 original size:22 final size:22
Alignment explanation
Indices: 53314001--53314053 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
53313991 AAGAGAATAG
** *
53314001 AGAGCACCGATGTGCTAAACAA
1 AGAGCACTAATGTACTAAACAA
* *
53314023 AGAGCACTAATGTACTAATCAG
1 AGAGCACTAATGTACTAAACAA
53314045 AGAGCACTA
1 AGAGCACTA
53314054 GTGAGTTAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.42, C:0.21, G:0.21, T:0.17
Consensus pattern (22 bp):
AGAGCACTAATGTACTAAACAA
Found at i:53321377 original size:30 final size:30
Alignment explanation
Indices: 53321341--53321401 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
53321331 CATTTAATAC
* *
53321341 AAACTTTGGAAAAATTACATTTTTTCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
53321371 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
53321401 A
1 A
53321402 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:53330439 original size:20 final size:21
Alignment explanation
Indices: 53330396--53330439 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
53330386 TATTTTGATT
*
53330396 TTTGATGATAGATTATGAATG
1 TTTGATGATAGATTATGAAAG
53330417 TTTGATGATAG-TTAT-ACAAG
1 TTTGATGATAGATTATGA-AAG
53330437 TTT
1 TTT
53330440 TGTTAAGTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.43
21 11 0.52
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.45
Consensus pattern (21 bp):
TTTGATGATAGATTATGAAAG
Found at i:53334343 original size:16 final size:16
Alignment explanation
Indices: 53334324--53334354 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
53334314 CTTCTTCACT
53334324 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
53334340 TACTTACTTACTTAA
1 TACTCACTTACTTAA
53334355 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:53334360 original size:20 final size:20
Alignment explanation
Indices: 53334321--53334360 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
53334311 AAACTTCTTC
* *
53334321 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
53334341 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
53334361 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:53334735 original size:55 final size:55
Alignment explanation
Indices: 53334591--53334800 Score: 243
Period size: 55 Copynumber: 3.9 Consensus size: 55
53334581 GTATCCTTTT
* *
53334591 GAAACTTACC-ATGGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAT-
1 GAAACTTACCAAT-GCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * * *
53334645 -CAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTCGCCTTATA
1 GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT-GCCTTATA
* * * *
53334699 GTAACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGTC-T-TA
1 GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
*
53334752 GAAATCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 GAAA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
53334801 AAACCCTAAT
Statistics
Matches: 132, Mismatches: 17, Indels: 13
0.81 0.10 0.08
Matches are distributed among these distances:
52 4 0.03
53 44 0.33
54 10 0.08
55 70 0.53
56 4 0.03
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (55 bp):
GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
Found at i:53342052 original size:51 final size:51
Alignment explanation
Indices: 53341921--53342112 Score: 170
Period size: 51 Copynumber: 3.8 Consensus size: 51
53341911 TAAAGTGGTT
** * * *
53341921 TTAGGTCATGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGAT-GG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAGC
* * * * **
53341971 TTAGGTCGCATTTGTAGTACTAAGTACAGGCTACTATGCGTACTTGATAGC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAGC
* * * * *
53342022 TTCGATCACATGTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAGC
* * * * * * *
53342073 TTTGGTCACAAGTGTGGTACTATGTGAAGGCCACTTTGTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTG
53342113 AAGAAGGTAG
Statistics
Matches: 114, Mismatches: 27, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
50 39 0.34
51 75 0.66
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (51 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAGC
Found at i:53342124 original size:51 final size:51
Alignment explanation
Indices: 53342016--53342157 Score: 169
Period size: 51 Copynumber: 2.8 Consensus size: 51
53342006 ATGCGTACTT
* * *
53342016 GATAGCTTCGATCACATGTGTGGTACTAAGTGCAGGCCACTATGTGTAAAA
1 GATAGCTTTGATCACAAGTGTGGTACTATGTGCAGGCCACTATGTGTAAAA
* * *
53342067 GATAGCTTTGGTCACAAGTGTGGTACTATGTGAAGGCCACTTTGTG-AAGAA
1 GATAGCTTTGATCACAAGTGTGGTACTATGTGCAGGCCACTATGTGTAA-AA
* * * * *
53342118 GGTAGCTTTGACCACAAGGGTGGTATTATATGCAGGCCAC
1 GATAGCTTTGATCACAAGTGTGGTACTATGTGCAGGCCAC
53342158 CAGGCATCCG
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
50 2 0.03
51 75 0.97
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.27
Consensus pattern (51 bp):
GATAGCTTTGATCACAAGTGTGGTACTATGTGCAGGCCACTATGTGTAAAA
Found at i:53349785 original size:50 final size:50
Alignment explanation
Indices: 53349725--53349890 Score: 163
Period size: 50 Copynumber: 3.3 Consensus size: 50
53349715 ATCACTCATT
* * * *
53349725 TGGCCAAATATTTAAGATAAAATATAATATCACATATGTGCTTACCTATA
1 TGGCCGAATATTCAAGATCAAATATAATATCACATATGTGCATACCTATA
* * *
53349775 TGGCCGAATATGCAAGATCAAATATAATGTCACATTTGTGCATACCT-TCA
1 TGGCCGAATATTCAAGATCAAATATAATATCACATATGTGCATACCTAT-A
** * ** * * *
53349825 TGGTAGAATATTCAAGATCCAATGCAACATCACATATGTACATACCTATG
1 TGGCCGAATATTCAAGATCAAATATAATATCACATATGTGCATACCTATA
* *
53349875 TGGTCGAATATACAAG
1 TGGCCGAATATTCAAG
53349891 GTCATTTAGC
Statistics
Matches: 94, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
49 1 0.01
50 92 0.98
51 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.30
Consensus pattern (50 bp):
TGGCCGAATATTCAAGATCAAATATAATATCACATATGTGCATACCTATA
Found at i:53351279 original size:17 final size:17
Alignment explanation
Indices: 53351237--53351270 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
53351227 TGAAAAGGAG
53351237 GGAGTAAGCATAAATGC
1 GGAGTAAGCATAAATGC
53351254 GGAGTAAGCATAAATGC
1 GGAGTAAGCATAAATGC
53351271 TTAGTAAGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.29, T:0.18
Consensus pattern (17 bp):
GGAGTAAGCATAAATGC
Found at i:53351717 original size:47 final size:49
Alignment explanation
Indices: 53351599--53351778 Score: 193
Period size: 46 Copynumber: 3.8 Consensus size: 49
53351589 TGTAACCCGC
* * *
53351599 CCATAAGTGAACTCGGACTCAACTCAAAGAGCTT-GGGTG---TTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGATGCCATTCACAT
*
53351645 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* * *
53351695 -C-TCA-TGAACTCGGACTCAACTCAACGAGTTC--A-GACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
53351738 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
53351779 CAAATATCCT
Statistics
Matches: 112, Mismatches: 9, Indels: 23
0.78 0.06 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 5 0.04
46 60 0.54
47 27 0.24
48 3 0.03
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (49 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:53351765 original size:93 final size:93
Alignment explanation
Indices: 53351606--53351778 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
53351596 CGCCCATAAG
* *** *
53351606 TGAACTCGGACTCAACTCAAAGAGCTTGGGTGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAAAGAGCTTAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
53351671 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
53351699 TGAACTCGGACTCAACTCAACGAG-TTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 TGAACTCGGACTCAACTCAAAGAGCTT-AGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
53351763 AACGAGTTCGGATGCC
65 AACGAGTTCGGATGCC
53351779 CAAATATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAAAGAGCTTAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:53357286 original size:46 final size:46
Alignment explanation
Indices: 53357132--53357286 Score: 147
Period size: 46 Copynumber: 3.3 Consensus size: 46
53357122 GCGAACTCGG
* * * * *
53357132 ACTCAACGAGCTCGGGCATTCGCATCCATGAGTGAACTTGAACTCA
1 ACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCA
* * * * *
53357178 ACTCAACGAGTTCGGGTGCCTAGTT-ACAT-C-TCA-CGAACTCAGACTCA
1 ACTCAACGAGTTC--G-GAC-A-TTCGCATCCATAAGTGAACTCGGACTCA
53357225 ACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCA
1 ACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCA
53357271 ACTCAACGAGTTCGGA
1 ACTCAACGAGTTCGGA
53357287 TGCCCAAATA
Statistics
Matches: 87, Mismatches: 13, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.05
44 3 0.03
45 3 0.03
46 40 0.46
47 23 0.26
48 3 0.03
49 3 0.03
50 4 0.05
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
ACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCA
Found at i:53364084 original size:42 final size:42
Alignment explanation
Indices: 53364034--53364154 Score: 136
Period size: 44 Copynumber: 2.8 Consensus size: 42
53364024 TTGATGCCTC
* *
53364034 TGTCCCAGACAGGGTCTTACACGAAA-TCAAATACGATGTCTA
1 TGTCCCAGACACGGTCTTACACGAAACTCAAAT-CGAGGTCTA
* * * *
53364076 TGTCCCAGACATGGTCTTACACATAAATCTCAAATCGAGGTTTG
1 TGTCCCAGACACGGTCTTACAC-GAAA-CTCAAATCGAGGTCTA
*
53364120 TGTCCCAGACACGGTCTTACACGATATCTCAAATC
1 TGTCCCAGACACGGTCTTACACGA-AACTCAAATC
53364155 AATGTCAACA
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
42 21 0.31
43 12 0.18
44 28 0.42
45 6 0.09
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (42 bp):
TGTCCCAGACACGGTCTTACACGAAACTCAAATCGAGGTCTA
Found at i:53368238 original size:50 final size:49
Alignment explanation
Indices: 53368160--53368375 Score: 234
Period size: 50 Copynumber: 4.3 Consensus size: 49
53368150 ATCACTCATT
* *
53368160 TGGCCAAATATACAAGATCAAATATAATATCACATATGTGCTTACCTGTA
1 TGGCCGAATATGCAAGATCAAATATAATATCACATATGTGCTTACCT-TA
* *
53368210 TGGCCGAATATGTAAGATCAAATTTAATATCACATATGTGCTTACCTATA
1 TGGCCGAATATGCAAGATCAAATATAATATCACATATGTGCTTACCT-TA
* * * *
53368260 TGGCCGAATATGCAAGATCAAATAAAATATCACATTTGTGCATACCATCA
1 TGGCCGAATATGCAAGATCAAATATAATATCACATATGTGCTTACC-TTA
* * * * * * * * *
53368310 TGGCCGAATATTCAAGACCCAATACAACATCACAAATGTACATACCTATG
1 TGGCCGAATATGCAAGATCAAATATAATATCACATATGTGCTTACCT-TA
*
53368360 TGGCCGAATATACAAG
1 TGGCCGAATATGCAAG
53368376 GTCATTTAGC
Statistics
Matches: 142, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
49 1 0.01
50 140 0.99
51 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (49 bp):
TGGCCGAATATGCAAGATCAAATATAATATCACATATGTGCTTACCTTA
Found at i:53368283 original size:100 final size:100
Alignment explanation
Indices: 53368160--53368375 Score: 265
Period size: 100 Copynumber: 2.2 Consensus size: 100
53368150 ATCACTCATT
* * * *
53368160 TGGCCAAATATACAAGATCAAATATAATATCACATATGTGCTTACC-TGTATGGCCGAATATGT-
1 TGGCCGAATATACAAGATCAAATAAAATATCACATATGTGCATACCAT-CATGGCCGAATAT-TC
* ** * * * *
53368223 AAGATCAAATTTAATATCACATATGTGCTTACCTATA
64 AAGACCAAATACAACATCACAAATGTACATACCTATA
* *
53368260 TGGCCGAATATGCAAGATCAAATAAAATATCACATTTGTGCATACCATCATGGCCGAATATTCAA
1 TGGCCGAATATACAAGATCAAATAAAATATCACATATGTGCATACCATCATGGCCGAATATTCAA
* *
53368325 GACCCAATACAACATCACAAATGTACATACCTATG
66 GACCAAATACAACATCACAAATGTACATACCTATA
53368360 TGGCCGAATATACAAG
1 TGGCCGAATATACAAG
53368376 GTCATTTAGC
Statistics
Matches: 98, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
99 1 0.01
100 96 0.98
101 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (100 bp):
TGGCCGAATATACAAGATCAAATAAAATATCACATATGTGCATACCATCATGGCCGAATATTCAA
GACCAAATACAACATCACAAATGTACATACCTATA
Found at i:53374038 original size:27 final size:27
Alignment explanation
Indices: 53374008--53374126 Score: 103
Period size: 27 Copynumber: 4.4 Consensus size: 27
53373998 GGATAAGTTG
*
53374008 TAGAATTACCAAAATACGCTTGTAGGA
1 TAGAATTACCAAAATACCCTTGTAGGA
* *
53374035 TAGAATTACCGAAATACCCTTGTAGGG
1 TAGAATTACCAAAATACCCTTGTAGGA
* * * * * *
53374062 TAGAAATATCGAAATACCCCTATAGGG
1 TAGAATTACCAAAATACCCTTGTAGGA
** * * *
53374089 TAGAATTACTGAGATACCCTTGTGGGG
1 TAGAATTACCAAAATACCCTTGTAGGA
*
53374116 TAAAATTACCA
1 TAGAATTACCA
53374127 TTTTGCCCCT
Statistics
Matches: 75, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 75 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (27 bp):
TAGAATTACCAAAATACCCTTGTAGGA
Found at i:53374890 original size:27 final size:27
Alignment explanation
Indices: 53374818--53374894 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
53374808 CCTCACTACA
53374818 ATCTGGTGGCTTCGCCACATATATATGT
1 ATCTGGTGGCTTCGCCACA-ATATATGT
* * *
53374846 -TCTGGTGGCCTAGCCACAATATCTGT
1 ATCTGGTGGCTTCGCCACAATATATGT
* *
53374872 ATCTGGTGACTTCGTCACAATAT
1 ATCTGGTGGCTTCGCCACAATAT
53374895 TTGGCAGCCT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
26 7 0.17
27 34 0.83
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (27 bp):
ATCTGGTGGCTTCGCCACAATATATGT
Found at i:53384868 original size:40 final size:40
Alignment explanation
Indices: 53384779--53385042 Score: 324
Period size: 40 Copynumber: 6.7 Consensus size: 40
53384769 TTGAATACTG
* * *
53384779 TCCGGGCTAAGTCCCAAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
53384818 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
53384858 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
53384897 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
53384937 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
53384977 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
53385018 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
53385043 AACGAGGAGC
Statistics
Matches: 200, Mismatches: 18, Indels: 13
0.87 0.08 0.06
Matches are distributed among these distances:
39 51 0.25
40 139 0.69
41 10 0.05
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:53385060 original size:120 final size:118
Alignment explanation
Indices: 53384779--53385075 Score: 311
Period size: 119 Copynumber: 2.5 Consensus size: 118
53384769 TTGAATACTG
* *
53384779 TCCGGGCTAAGTCCCAAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-AAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
* * *
53384839 ATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCTAGTTACTAAA
61 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
* ** * *
53384897 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACAAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* * *
53384962 GTGCGAGTTACTAAATCCGGGTTAAGTCTCGAAGGCATTTGTGCGAATTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AA
* * * *
53385018 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACAAGTGA-CTAAATCCGGTTAAATCCCGAAGG
53385076 TACGTGATTT
Statistics
Matches: 150, Mismatches: 20, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
118 22 0.15
119 65 0.43
120 61 0.41
121 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACAAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:53389036 original size:27 final size:27
Alignment explanation
Indices: 53389006--53389147 Score: 176
Period size: 27 Copynumber: 5.3 Consensus size: 27
53388996 CAGTTTGTAG
* * *
53389006 AATGACCGTAATATCCCTATAAGGTAA
1 AATGACCGTAATACCCCTGTAGGGTAA
*
53389033 AATGGCCGTAATACCCCTGTAGGGTAA
1 AATGACCGTAATACCCCTGTAGGGTAA
*
53389060 AATGACCATAATACCCCTGTAGGGTAA
1 AATGACCGTAATACCCCTGTAGGGTAA
** *
53389087 AATGATTGTAATGCCCCTGTAGGGTAA
1 AATGACCGTAATACCCCTGTAGGGTAA
* * * *
53389114 AATAACCATAATACCACTGTATGGTAA
1 AATGACCGTAATACCCCTGTAGGGTAA
53389141 AATGACC
1 AATGACC
53389148 ATTATGCCTT
Statistics
Matches: 97, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 97 1.00
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.25
Consensus pattern (27 bp):
AATGACCGTAATACCCCTGTAGGGTAA
Found at i:53389317 original size:27 final size:26
Alignment explanation
Indices: 53389287--53389374 Score: 86
Period size: 27 Copynumber: 3.3 Consensus size: 26
53389277 GGAAGTACTA
*
53389287 TACTGGTGACTATGTCACATTCACTGT
1 TACTGGTGGCTATGTCACATT-ACTGT
* * *
53389314 TACTGGTGGCCATGCCACAATTACTGA
1 TACTGGTGGCTATGTCAC-ATTACTGT
* *
53389341 TATTGGTGGCTTTGTCACATTTACTGT
1 TACTGGTGGCTATGTCACA-TTACTGT
*
53389368 TTCTGGT
1 TACTGGT
53389375 AGCTTTGCTG
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
26 1 0.02
27 44 0.92
28 3 0.06
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (26 bp):
TACTGGTGGCTATGTCACATTACTGT
Found at i:53393439 original size:50 final size:48
Alignment explanation
Indices: 53393362--53393603 Score: 225
Period size: 50 Copynumber: 4.9 Consensus size: 48
53393352 ATTGTGAATA
*
53393362 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTATTAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-T-TTAAGT
* * * * *
53393412 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTT-CGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-A-GATTTAAG-T
* * * * * *
53393463 CACGTGTGTAGTACTAAGTGTAGGCTACTGCGTGTATCAGATGGTGACGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT--TTAAGT
* * **
53393513 CACGTGTGTAGTACTAAGTGCAGGCCACTACGTGTACCAGATTTTTGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TTTAAGT
* * *
53393562 CGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
53393604 AACTTCGGCT
Statistics
Matches: 157, Mismatches: 27, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
48 3 0.02
49 40 0.25
50 75 0.48
51 37 0.24
52 1 0.01
53 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (48 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTTAAGT
Found at i:53393599 original size:99 final size:99
Alignment explanation
Indices: 53393362--53393604 Score: 274
Period size: 101 Copynumber: 2.4 Consensus size: 99
53393352 ATTGTGAATA
* * * *
53393362 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTATTAAGTCGCATGTGTAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TATGAAGTCACATGTGTAGTACT
* *
53393427 AAGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
65 AAGTGCAGGCCACTACGCGTACTCAAT-ACTTCGAT
* * * * * *
53393463 CACGTGTGTAGTACTAAGTGTAGGCTACTGCGTGTATCAGATGGTGACGTCACGTGTGTAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-ATGAAGTCACATGTGTAGTACT
* * * *
53393528 AAGTGCAGGCCACTACGTGTAC-CAGAT-TTTTGGT
65 AAGTGCAGGCCACTACGCGTACTCA-ATACTTCGAT
* *
53393562 CGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGATA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATA
53393605 ACTTCGGCTA
Statistics
Matches: 118, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
99 41 0.35
100 3 0.03
101 74 0.63
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (99 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATATGAAGTCACATGTGTAGTACTA
AGTGCAGGCCACTACGCGTACTCAATACTTCGAT
Found at i:53400745 original size:13 final size:13
Alignment explanation
Indices: 53400727--53400751 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
53400717 CTTGACACTC
53400727 GCCCGTGTCCATG
1 GCCCGTGTCCATG
53400740 GCCCGTGTCCAT
1 GCCCGTGTCCAT
53400752 CACACGGCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.40, G:0.28, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCATG
Found at i:53401949 original size:98 final size:91
Alignment explanation
Indices: 53401781--53402000 Score: 242
Period size: 93 Copynumber: 2.3 Consensus size: 91
53401771 AAATGTTAAG
* * * *
53401781 GCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATTAAAGTTGATGCCGTGTCCTAGACAGG
1 GCCATGTCCCAGACA-GGTCTTACACTAGCTAGCACATTAAAGTCGATGCCATGTCCCAGACAGG
* * * *
53401846 TCTTACACTGACTTTCATATATCGAGGCTGAT
65 TCTTACACTGAC--ACACA-A-C-AAGCTGAC
** ***
53401878 GCCATGTCCCAGACAGGTCTTACACTAGCTCTCATCTATTGGTGTCGATGCCATGTCCCAGACAG
1 GCCATGTCCCAGACAGGTCTTACACTAGCTAGCA-C-ATTAAAGTCGATGCCATGTCCCAGACAG
*
53401943 GTCTTACGCTGACACACAACAAGCTGAC
64 GTCTTACACTGACACACAACAAGCTGAC
53401971 GCCATGTCCCAGACAGGTCTTACACTAGCT
1 GCCATGTCCCAGACAGGTCTTACACTAGCT
53402001 TCTATATCCG
Statistics
Matches: 107, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
93 36 0.34
94 1 0.01
95 1 0.01
96 19 0.18
97 16 0.15
98 34 0.32
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.26
Consensus pattern (91 bp):
GCCATGTCCCAGACAGGTCTTACACTAGCTAGCACATTAAAGTCGATGCCATGTCCCAGACAGGT
CTTACACTGACACACAACAAGCTGAC
Found at i:53402112 original size:46 final size:47
Alignment explanation
Indices: 53401781--53402120 Score: 195
Period size: 49 Copynumber: 7.2 Consensus size: 47
53401771 AAATGTTAAG
* * *
53401781 GCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATTAA--A-GTTGAT
1 GCCATGTCCCAGACA-GGTCTTACACTAGCT--CTCA-TAACGAGGCTGAT
* * *
53401829 GCCGTGTCCTAGACAGGTCTTACACT-GACTTTCATATATCGAGGCTGAT
1 GCCATGTCCCAGACAGGTCTTACACTAG-CTCTCATA-A-CGAGGCTGAT
* *
53401878 GCCATGTCCCAGACAGGTCTTACACTAGCTCTCAT--CTATTGGTGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTCTCATAACGA--GG-CT-GAT
* * * * * *
53401927 GCCATGTCCCAGACAGGTCTTACGCT-G-ACACACAAC-AAGCTGAC
1 GCCATGTCCCAGACAGGTCTTACACTAGCTCTCATAACGAGGCTGAT
* *
53401971 GCCATGTCCCAGACAGGTCTTACACTAGCT-TCTATATCCGAGG-TCATT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTCTC-ATA-ACGAGGCTGA-T
** * ** * * *
53402019 G-CATGTCCCAGACATATCTTACACTAGCTCTCGTCTCAAAGCAGAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTCTCATAACGAGGCTGAT
* * * *
53402065 G-CATGTCCTAGACATGTCTTACACTGGCTCTCATAACGTGGCTGAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTCTCATAACGAGGCTGAT
*
53402111 G-CTTGTCCCA
1 GCCATGTCCCA
53402121 AATATGTCTT
Statistics
Matches: 225, Mismatches: 46, Indels: 44
0.71 0.15 0.14
Matches are distributed among these distances:
44 29 0.13
45 8 0.04
46 52 0.23
47 49 0.22
48 22 0.10
49 64 0.28
50 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (47 bp):
GCCATGTCCCAGACAGGTCTTACACTAGCTCTCATAACGAGGCTGAT
Found at i:53404302 original size:40 final size:40
Alignment explanation
Indices: 53404249--53404324 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
53404239 TCGACTAAAA
*
53404249 TGGCACTTAGTGTGCGATTCAAAATAGCTTCGGCTAAACG
1 TGGCACTTAGTGTGCAATTCAAAATAGCTTCGGCTAAACG
* * *
53404289 TGGCACTTGGTGTGCAATTTAAGATAGCTTCGGCTA
1 TGGCACTTAGTGTGCAATTCAAAATAGCTTCGGCTA
53404325 TATATATATA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (40 bp):
TGGCACTTAGTGTGCAATTCAAAATAGCTTCGGCTAAACG
Found at i:53410431 original size:48 final size:47
Alignment explanation
Indices: 53410360--53410579 Score: 178
Period size: 48 Copynumber: 4.6 Consensus size: 47
53410350 TATGTGTACT
*
53410360 AGTGTAAGACCATGTTTGGAACATGGCATCGACCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCG-CCACATTATGAGAGCC
* * ** * * *
53410408 AGTGTAAGACCATGTCTAGAACATGGCATCGGC-GTTTATGTGTGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGCCACATTATGAGAGCC
* * * * * *
53410454 AGTGTAAGACCATGTTTGGGACATGGCATCGGCA-TTTAGATAAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGCCACATT--ATGAGAGCC
* * * *
53410502 AGTGTAAAACCATGTCTGGAACATGGCATCAGCCTCGA-CATGTGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATC-GCCAC-ATTATGAGAGCC
* *
53410550 AGTGTAAGACCATATCTAGG-ATATGGCATC
1 AGTGTAAGACCATGTCT-GGAACATGGCATC
53410580 AGTAATTTAT
Statistics
Matches: 138, Mismatches: 27, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
46 41 0.30
47 1 0.01
48 92 0.67
49 4 0.03
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGAACATGGCATCGCCACATTATGAGAGCC
Found at i:53410464 original size:46 final size:46
Alignment explanation
Indices: 53410350--53410531 Score: 197
Period size: 48 Copynumber: 3.9 Consensus size: 46
53410340 AATTGAGTGA
* * *
53410350 TATGTGTA-CTAGTGTAAGACCATGTTTGGAACATGGCATCGACCACAT
1 TATGTG-AGCTAGTGTAAGACCATGTCTGGAACATGGCATCG-GCA-TT
* * * *
53410398 TATGAGAGCCAGTGTAAGACCATGTCTAGAACATGGCATCGGCGTT
1 TATGTGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATT
* * *
53410444 TATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATT
1 TATGTGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATT
*
53410490 TA-GATAAGAGCTAGTGTAAAACCATGTCTGGAACATGGCATC
1 TATG-T--GAGCTAGTGTAAGACCATGTCTGGAACATGGCATC
53410532 AGCCTCGACA
Statistics
Matches: 112, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
45 1 0.01
46 43 0.38
47 2 0.02
48 66 0.59
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (46 bp):
TATGTGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATT
Found at i:53410514 original size:94 final size:94
Alignment explanation
Indices: 53410350--53410531 Score: 260
Period size: 94 Copynumber: 1.9 Consensus size: 94
53410340 AATTGAGTGA
*
53410350 TATGTGTACTAGTGTAAGACCATGTTTGGAACATGGCATCGACCACATTATGAGAGCCAGTGTAA
1 TATGTGTACTAGTGTAAGACCATGTTTGGAACATGGCATCGACCACATTATAAGAGCCAGTGTAA
*
53410415 GACCATGTCTAGAACATGGCATCGGCGTT
66 AACCATGTCTAGAACATGGCATCGGCGTT
* * * * *
53410444 TATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCG-GCA-TTTAGATAAGAGCTAGTGT
1 TATGTGTACTAGTGTAAGACCATGTTTGGAACATGGCATCGACCACATT--ATAAGAGCCAGTGT
*
53410507 AAAACCATGTCTGGAACATGGCATC
64 AAAACCATGTCTAGAACATGGCATC
53410532 AGCCTCGACA
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
92 2 0.03
93 2 0.03
94 74 0.95
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (94 bp):
TATGTGTACTAGTGTAAGACCATGTTTGGAACATGGCATCGACCACATTATAAGAGCCAGTGTAA
AACCATGTCTAGAACATGGCATCGGCGTT
Found at i:53418311 original size:40 final size:40
Alignment explanation
Indices: 53418267--53418432 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
53418257 CGACAAATCA
* * *
53418267 GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTTG
1 GCTATATATGACACTTAGTGTGCGATTCGAGATAGCTTCG
* * * * *
53418307 GCTATATATGGCAGTTAGTCTGCGATTCAATATAGCTTCG
1 GCTATATATGACACTTAGTGTGCGATTCGAGATAGCTTCG
* * * *
53418347 GCTATATACGATACTTAGTGTGCGAGATCGAGATAGCTTCA
1 GCTATATATGACACTTAGTGTGCGA-TTCGAGATAGCTTCG
* * *
53418388 GTTATATATGACACTTAGTGTGCGATTTGAGATAGCTTCA
1 GCTATATATGACACTTAGTGTGCGATTCGAGATAGCTTCG
53418428 GCTAT
1 GCTAT
53418433 GTACAGTGCT
Statistics
Matches: 105, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
40 72 0.69
41 33 0.31
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.34
Consensus pattern (40 bp):
GCTATATATGACACTTAGTGTGCGATTCGAGATAGCTTCG
Found at i:53418394 original size:41 final size:41
Alignment explanation
Indices: 53418338--53418455 Score: 141
Period size: 40 Copynumber: 2.9 Consensus size: 41
53418328 GCGATTCAAT
*
53418338 ATAGCTTCGGCTATATACGATACTTAGTGTGCGAGATCGAG
1 ATAGCTTCAGCTATATACGATACTTAGTGTGCGAGATCGAG
* * * * *
53418379 ATAGCTTCAGTTATATATGACACTTAGTGTGCGA-TTTGAG
1 ATAGCTTCAGCTATATACGATACTTAGTGTGCGAGATCGAG
* *
53418419 ATAGCTTCAGCTATGTAC-AGTGCTTAGTGTGCGAGAT
1 ATAGCTTCAGCTATATACGA-TACTTAGTGTGCGAGAT
53418456 ATTGAGTATT
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
39 1 0.02
40 31 0.49
41 31 0.49
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.33
Consensus pattern (41 bp):
ATAGCTTCAGCTATATACGATACTTAGTGTGCGAGATCGAG
Found at i:53418412 original size:81 final size:81
Alignment explanation
Indices: 53418264--53418455 Score: 208
Period size: 81 Copynumber: 2.4 Consensus size: 81
53418254 CGACGACAAA
** * * ** * *
53418264 TCAGCTATATATGGCACTTAGTGTGCGA-TTCGACATAGCTTTGGCTATATATGGCAGTTAGTCT
1 TCAGCTATATACAGTACTTAGTGTGCGAGATCGACATAGCTTCAGCTATATATGACACTTAGTCT
*
53418328 GCGATTCAATATAGCT
66 GCGATTCAAGATAGCT
* * * *
53418344 TCGGCTATATAC-GATACTTAGTGTGCGAGATCGAGATAGCTTCAGTTATATATGACACTTAGTG
1 TCAGCTATATACAG-TACTTAGTGTGCGAGATCGACATAGCTTCAGCTATATATGACACTTAGTC
**
53418408 TGCGATTTGAGATAGCT
65 TGCGATTCAAGATAGCT
* *
53418425 TCAGCTATGTACAGTGCTTAGTGTGCGAGAT
1 TCAGCTATATACAGTACTTAGTGTGCGAGAT
53418456 ATTGAGTATT
Statistics
Matches: 92, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
79 1 0.01
80 23 0.25
81 67 0.73
82 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (81 bp):
TCAGCTATATACAGTACTTAGTGTGCGAGATCGACATAGCTTCAGCTATATATGACACTTAGTCT
GCGATTCAAGATAGCT
Found at i:53420663 original size:40 final size:40
Alignment explanation
Indices: 53420596--53420802 Score: 272
Period size: 40 Copynumber: 5.2 Consensus size: 40
53420586 CGGAATTTAG
* * * *
53420596 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * * *
53420636 CCGGGT-ATAGCAACTCGCACACATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
53420676 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
*
53420716 CCGGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
** *
53420756 CCGGATAAAATCACTAGCACAAATGCCTTCGGAACTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
53420796 CCGGATA
1 CCGGATA
53420803 TCATTCAAAT
Statistics
Matches: 145, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
39 2 0.01
40 140 0.97
41 3 0.02
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (40 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:53423821 original size:48 final size:48
Alignment explanation
Indices: 53423600--53423820 Score: 334
Period size: 48 Copynumber: 4.6 Consensus size: 48
53423590 ATGTGTAACC
*
53423600 GTGTAAGAACATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCA
* *
53423648 GTGTAAGACCATGTTTGGGACATGGCATCGGCATTGTTATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCA
*
53423696 GTGTAAGACCATGTCTAGGACATGGCATCGGCATTGTTACGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCA
* * * * * * *
53423744 ATGTAAGAACATGTCTGGGACATGGCATCAGCATCGTCATGTGAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCA
*
53423792 GTGTATGACCATGTCTGGGACATGGCATC
1 GTGTAAGACCATGTCTGGGACATGGCATC
53423821 AACATGAGGC
Statistics
Matches: 156, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 156 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCA
Found at i:53428392 original size:85 final size:85
Alignment explanation
Indices: 53428249--53428427 Score: 358
Period size: 85 Copynumber: 2.1 Consensus size: 85
53428239 GGCCGGCCAT
53428249 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
53428314 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
53428334 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
53428399 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
53428419 GAGCATGGG
1 GAGCATGGG
53428428 CAATAAAATA
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:53429684 original size:39 final size:40
Alignment explanation
Indices: 53429584--53429768 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
53429574 TCGAATGATG
* * *
53429584 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
53429623 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * * *
53429664 TCCAGGCTAAG-CCCGAAGGCATTGGTGCGAGATACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
53429703 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
53429742 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
53429769 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:53436374 original size:85 final size:85
Alignment explanation
Indices: 53436231--53436409 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
53436221 GGCCGGCCAT
*
53436231 GAGCATGGGTGGACAAGATGTTCTGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
53436296 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
53436316 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
53436381 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
53436401 GAGCATGGG
1 GAGCATGGG
53436410 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.09, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:53437760 original size:40 final size:39
Alignment explanation
Indices: 53437570--53437753 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
53437560 CGAATGATGT
* * * *
53437570 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
53437610 CCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* * *
53437650 CCAGGCTAAG-CCCGAAGGCATTGGTGCGAGATACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
53437688 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
53437729 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
53437754 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 33 0.27
40 79 0.65
41 10 0.08
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:53437775 original size:79 final size:79
Alignment explanation
Indices: 53437622--53437786 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
53437612 AGACTAAGAT
* **
53437622 CCGAAGGCATTTGTGCGAGTTACTAATTCCAGGCTAAGCCCGAAGGCATTGGTGCGAGATACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGATACTAA
*
53437687 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
53437701 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCAGGCTAAG-CCCGAAGGCATTGGAACGAGATA-C
* *
53437764 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
53437780 CCGAAGG
1 CCGAAGG
53437787 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGATACTAA
ATCCGGGTTAAATC
Found at i:53439571 original size:68 final size:64
Alignment explanation
Indices: 53439461--53439713 Score: 219
Period size: 68 Copynumber: 3.9 Consensus size: 64
53439451 ATATAGATGG
** * * * *
53439461 TATGTAGCTAGGTCACATGTATAGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACGAGAC
1 TATGTAGCTAGGTCACATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTACGAG--
53439524 ATTA
62 A-TA
* *
53439528 TGATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 T-ATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * * *
53439593 TATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGTAGACAAAAGAGCTACGAGA
1 TATGTAGCTAGGTCACATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
53439658 TA
63 TA
* * *
53439660 AACTG--GCTAGGTCACATGGGTGGTACTAAGTGTCCACCATGT-GTACAAGAGAGC
1 TA-TGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
53439714 CAAAATTATG
Statistics
Matches: 153, Mismatches: 25, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 25 0.16
65 3 0.02
66 23 0.15
67 32 0.21
68 50 0.33
69 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.24
Consensus pattern (64 bp):
TATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:53444935 original size:17 final size:17
Alignment explanation
Indices: 53444913--53444945 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
53444903 TAATATTTTT
*
53444913 AATTATTAAAAATTAAA
1 AATTATAAAAAATTAAA
53444930 AATTATAAAAAATTAA
1 AATTATAAAAAATTAA
53444946 TTTTTAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
AATTATAAAAAATTAAA
Found at i:53448958 original size:154 final size:153
Alignment explanation
Indices: 53448678--53448982 Score: 504
Period size: 154 Copynumber: 2.0 Consensus size: 153
53448668 GTGCGTGGGA
* *
53448678 ATAAGAAAAAATTTATGAGAAATTAATAAAGGCTTCAAAGCGTGTAACATTGCCACTTTTTTTAA
1 ATAAGAAAAAATTTATGAGAAATTAACAAAGGCTTCAAAGCATGTAACATTGCCACTTTTTTTAA
*
53448743 GTTTCTATTCTTGCCCACCTATACTATGGTGTGCAAAAGAGTTACTGGCAAATGAACCTTGAGGA
66 GTGTCTATTC-TGCCCACCTATACTATGGTGTGCAAAAGAGTTACTGGCAAATGAACCTTGAGGA
* *
53448808 TATAATGAAGCCCAATGACTGTCT
130 TACAATAAAGCCCAATGACTGTCT
* *
53448832 ATAAGAATAAATTTATGAGAAATTAACAAAGGCTTCAAGGCATGTAACATTGCCACTTTTTTTAA
1 ATAAGAAAAAATTTATGAGAAATTAACAAAGGCTTCAAAGCATGTAACATTGCCACTTTTTTTAA
53448897 GTGTCTATTC-GCCTCCACCTATACTATGGTGTGCAAAAGAGTTACTGGCAAATGAACCTTGAGG
66 GTGTCTATTCTG-C-CCACCTATACTATGGTGTGCAAAAGAGTTACTGGCAAATGAACCTTGAGG
*
53448961 ATACAATAAAGCCCATTGACTG
129 ATACAATAAAGCCCAATGACTG
53448983 GCTAGGTCTT
Statistics
Matches: 141, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
152 1 0.01
153 1 0.01
154 139 0.99
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (153 bp):
ATAAGAAAAAATTTATGAGAAATTAACAAAGGCTTCAAAGCATGTAACATTGCCACTTTTTTTAA
GTGTCTATTCTGCCCACCTATACTATGGTGTGCAAAAGAGTTACTGGCAAATGAACCTTGAGGAT
ACAATAAAGCCCAATGACTGTCT
Found at i:53457091 original size:76 final size:76
Alignment explanation
Indices: 53456954--53457098 Score: 200
Period size: 76 Copynumber: 1.9 Consensus size: 76
53456944 TACGCATGTT
* * * * * * *
53456954 AGTATAATTGTTTTGACTTGTCCGATGATGCATAGTATGTGCCAATATATTTTTTTTGATTTATC
1 AGTATAATTGCTTTGACTTGTCCAACGATGCACAGTATGTGCCAATAAATTTCTTTCGATTTATC
53457019 CGATGATGTAC
66 CGATGATGTAC
* * *
53457030 AGTATAATTGCTTTGGCTTGTCCAACGATGCACAGTGTGTGCCAATAAATTTCTTTCGATTTATT
1 AGTATAATTGCTTTGACTTGTCCAACGATGCACAGTATGTGCCAATAAATTTCTTTCGATTTATC
53457095 CGAT
66 CGAT
53457099 AATATAGTAC
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
76 59 1.00
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (76 bp):
AGTATAATTGCTTTGACTTGTCCAACGATGCACAGTATGTGCCAATAAATTTCTTTCGATTTATC
CGATGATGTAC
Found at i:53458088 original size:22 final size:23
Alignment explanation
Indices: 53458051--53458103 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
53458041 ACACTAAAGC
53458051 CCAAAACCTGTAAACAAAAAACCCT
1 CCAAAA-C-GTAAACAAAAAACCCT
* *
53458076 -CAAAACGTAAACACAAAACTCT
1 CCAAAACGTAAACAAAAAACCCT
53458098 CCAAAA
1 CCAAAA
53458104 GTGTTATGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
22 14 0.56
23 6 0.24
24 5 0.20
ACGTcount: A:0.55, C:0.30, G:0.04, T:0.11
Consensus pattern (23 bp):
CCAAAACGTAAACAAAAAACCCT
Found at i:53468794 original size:40 final size:40
Alignment explanation
Indices: 53468720--53468944 Score: 321
Period size: 40 Copynumber: 5.6 Consensus size: 40
53468710 AACCCAAGTA
* * *
53468720 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
53468759 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
53468799 CCTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATG
*
53468842 CCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
53468882 CCTTCGGGACTTAGCCCGGATATGGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
53468922 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
53468945 CATCCAAATA
Statistics
Matches: 169, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
39 13 0.08
40 118 0.70
41 1 0.01
43 36 0.21
44 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:53468843 original size:83 final size:82
Alignment explanation
Indices: 53468720--53468944 Score: 336
Period size: 83 Copynumber: 2.8 Consensus size: 82
53468710 AACCCAAGTA
* * *
53468720 CCTTCGGGATTTAG-CCGGATATAGCA--ACTCGCACACATGCCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGCACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
53468782 AGTCACTAGCACAAATG
66 AGTCACTAGCACAAATG
* *
53468799 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
53468864 TAGTCACTAGCACAAATG
65 TAGTCACTAGCACAAATG
*
53468882 CCTTCGGGACTTAGCCCGGATATGGTCACTA---GCACAAATGCCTTCGGGACTTAGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAG-CACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
53468944 T
65 T
53468945 CATCCAAATA
Statistics
Matches: 133, Mismatches: 8, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
79 13 0.10
80 41 0.31
81 1 0.01
83 77 0.58
84 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (82 bp):
CCTTCGGGACTTAGCCCGGATATAGCACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
AGTCACTAGCACAAATG
Found at i:53479443 original size:55 final size:55
Alignment explanation
Indices: 53479370--53479476 Score: 178
Period size: 55 Copynumber: 1.9 Consensus size: 55
53479360 AGTCATTTTT
*
53479370 GTACATGGGCAGGCCACACGGGCGTGTGCCATGGCCGTGTCTTAAAGTCAGTATC
1 GTACATGGGCAAGCCACACGGGCGTGTGCCATGGCCGTGTCTTAAAGTCAGTATC
* * *
53479425 GTACATGGGCAAGTCACACGGGCGTGTGCCATGGCCGTGTGTTGAAGTCAGT
1 GTACATGGGCAAGCCACACGGGCGTGTGCCATGGCCGTGTCTTAAAGTCAGT
53479477 GTTGCACACG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.20, C:0.23, G:0.35, T:0.22
Consensus pattern (55 bp):
GTACATGGGCAAGCCACACGGGCGTGTGCCATGGCCGTGTCTTAAAGTCAGTATC
Found at i:53479505 original size:55 final size:55
Alignment explanation
Indices: 53479384--53479489 Score: 158
Period size: 55 Copynumber: 1.9 Consensus size: 55
53479374 ATGGGCAGGC
* *
53479384 CACACGGGCGTGTGCCATGGCCGTGTCTTAAAGTCAGTATCGTACATGGGCAAGT
1 CACACGGGCGTGTGCCATGGCCGTGTCTTAAAGTCAGTATCGCACACGGGCAAGT
* * * *
53479439 CACACGGGCGTGTGCCATGGCCGTGTGTTGAAGTCAGTGTTGCACACGGGC
1 CACACGGGCGTGTGCCATGGCCGTGTCTTAAAGTCAGTATCGCACACGGGC
53479490 TAAGGACATG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
55 45 1.00
ACGTcount: A:0.19, C:0.25, G:0.34, T:0.23
Consensus pattern (55 bp):
CACACGGGCGTGTGCCATGGCCGTGTCTTAAAGTCAGTATCGCACACGGGCAAGT
Found at i:53486453 original size:16 final size:15
Alignment explanation
Indices: 53486429--53486458 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
53486419 AACTGTTTTA
53486429 TTACAAATTTCACTC
1 TTACAAATTTCACTC
53486444 TTACATAATTTCACT
1 TTACA-AATTTCACT
53486459 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:53486778 original size:50 final size:50
Alignment explanation
Indices: 53486661--53486947 Score: 299
Period size: 50 Copynumber: 5.7 Consensus size: 50
53486651 CGAAGCTATA
* * * * * *
53486661 TGGTACGCATAGTAGCCTGCACTTAGTACTATACATGCGACC-AACAATC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
*
53486710 TGGTACACGTAGTAGCCTGCAGTTAGTACTACACACGTGACCTAACCATC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
* * ***
53486760 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA-CCATC
* * * * * *
53486811 GGGTACGCATAGTAGCCTGCACTTAGTATTACACATGTGACCTAACTATC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
53486861 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACCATC
*** * ** *
53486913 TTAAACACATAGTAGATTGCACATAGTACTACACA
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACA
53486948 TGTGTTCTCA
Statistics
Matches: 197, Mismatches: 35, Indels: 9
0.82 0.15 0.04
Matches are distributed among these distances:
49 37 0.19
50 87 0.44
51 38 0.19
52 35 0.18
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (50 bp):
TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
Found at i:53486844 original size:101 final size:101
Alignment explanation
Indices: 53486719--53486900 Score: 319
Period size: 101 Copynumber: 1.8 Consensus size: 101
53486709 CTGGTACACG
*
53486719 TAGTAGCCTGCAGTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
53486784 AGTACTACACACGTGATTGAAGTTGTCGGGTACGCA
66 AGTACTACACACGTGATTGAAGTTGTCGGGTACGCA
* * * *
53486820 TAGTAGCCTGCACTTAGTATTACACATGTGACCTAACTATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
53486885 AGTACTACACACGTGA
66 AGTACTACACACGTGA
53486901 CCTAAAACCA
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
101 76 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
AGTACTACACACGTGATTGAAGTTGTCGGGTACGCA
Found at i:53486898 original size:151 final size:151
Alignment explanation
Indices: 53486662--53486947 Score: 448
Period size: 151 Copynumber: 1.9 Consensus size: 151
53486652 GAAGCTATAT
*
53486662 GGTACGCATAGTAGCCTGCACTTAGTACTATACATGCGACCAACAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTACACGTAGTAGCC
* * * * *
53486727 TGCAGTTAGTACTACACACGTGACCT-AACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
66 TGCACTTAGTACTACACACGTGACCTAAACCATCTGAAACACATAGTAGACTGCACATAGTACTA
53486791 CACACGTGATTGAAGTTGTCG
131 CACACGTGATTGAAGTTGTCG
* * *
53486812 GGTACGCATAGTAGCCTGCACTTAGTATTACACATGTGACCTAACTATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCTGGTACACGTAGTAGC
* *
53486877 CTGCACTTAGTACTACACACGTGACCTAAAACCATCTTAAACACATAGTAGATTGCACATAGTAC
65 CTGCACTTAGTACTACACACGTGACCT-AAACCATCTGAAACACATAGTAGACTGCACATAGTAC
53486942 TACACA
129 TACACA
53486948 TGTGTTCTCA
Statistics
Matches: 122, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
150 38 0.31
151 48 0.39
153 36 0.30
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.26
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGACCTAAACCATCTGAAACACATAGTAGACTGCACATAGTACTA
CACACGTGATTGAAGTTGTCG
Found at i:53493033 original size:46 final size:46
Alignment explanation
Indices: 53492940--53493148 Score: 212
Period size: 46 Copynumber: 4.5 Consensus size: 46
53492930 CCCTGTCGAA
*
53492940 GCATGTCCCAAACATGTCTTACACTAGC--ACATCTCGTA-GCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCTAACATCTCG-AGGCCGAT
* *
53492984 GCATGTTCCAGACATGT-TTGACACTAGCTAACATCTTGAGGCCGAT
1 GCATGTCCCAGACATGTCTT-ACACTAGCTAACATCTCGAGGCCGAT
* *** * * *
53493030 GCATGTCCTAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCTAACATCTCGAGGCCGAT
* * * *
53493076 GCCATGTCCCAGACATGGTCTTACACTGGCTATCATAAT-GTGGCCGAT
1 G-CATGTCCCAGACAT-GTCTTACACTAGCTAACAT-CTCGAGGCCGAT
53493124 GCATGTCCCAGACATGTCTTACACT
1 GCATGTCCCAGACATGTCTTACACT
53493149 GACACACAAA
Statistics
Matches: 136, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
43 2 0.01
44 23 0.17
45 1 0.01
46 58 0.43
47 29 0.21
48 22 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (46 bp):
GCATGTCCCAGACATGTCTTACACTAGCTAACATCTCGAGGCCGAT
Found at i:53493128 original size:94 final size:90
Alignment explanation
Indices: 53492940--53493148 Score: 253
Period size: 94 Copynumber: 2.3 Consensus size: 90
53492930 CCCTGTCGAA
* *
53492940 GCATGTCCCAAACATGTCTTACACTAGCACATCTCGTAGCCGATGCATGTTCCAGACATGTTTGA
1 GCATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGATGCATGTCCCAGACATGTTTGA
**
53493005 CACTAGCTAACATCTTGAGGCCGAT
66 CACTAGCTAACATAATGAGGCCGAT
* *
53493030 GCATGTCCTAGACATGTCTTACACTAGC-CCTCGTC-TCAATGCCGATGCCATGTCCCAGACATG
1 GCATGTCCCAGACATGTCTTACACTAGCACATC-TCGT--A-GCCGATG-CATGTCCCAGACAT-
* * *
53493093 GTCTT-ACACTGGCTATCATAATGTGGCCGAT
60 GT-TTGACACTAGCTAACATAATGAGGCCGAT
53493124 GCATGTCCCAGACATGTCTTACACT
1 GCATGTCCCAGACATGTCTTACACT
53493149 GACACACAAA
Statistics
Matches: 102, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
89 4 0.04
90 28 0.27
91 1 0.01
92 7 0.07
93 13 0.13
94 47 0.46
95 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (90 bp):
GCATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGATGCATGTCCCAGACATGTTTGA
CACTAGCTAACATAATGAGGCCGAT
Found at i:53502589 original size:40 final size:40
Alignment explanation
Indices: 53502558--53502769 Score: 243
Period size: 40 Copynumber: 5.3 Consensus size: 40
53502548 GGACTAAGAT
53502558 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
53502598 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
* *
53502638 CCGAAGGCCTTTGTGCGAGATACTAAA-TCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
* * ** * *
53502678 CCGAAGGCATTCGTGCGAGTTGTTAAA-TCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGAT-ACAAATTCCGGGTTAAGCC
* * * * * *
53502718 CCGAAGGCA-TTGTGTGAGTTACTAAA-ACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
53502757 CCGAAGGCATTTG
1 CCGAAGGCATTTG
53502770 AACGAGGAGC
Statistics
Matches: 154, Mismatches: 14, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
39 32 0.21
40 119 0.77
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
Found at i:53502642 original size:80 final size:80
Alignment explanation
Indices: 53502505--53502769 Score: 272
Period size: 80 Copynumber: 3.3 Consensus size: 80
53502495 TTGAATGCTG
* * ** **
53502505 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGA-ATATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TGACA-A-ATCCGGGTTAAGCCCCGAAGGCA
53502567 TTTGTGCGAGATAC-AAA
63 TTTGTGCGAGATACTAAA
* *
53502584 TTCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCCT
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATGACAAA-TCCGGGTTAAGCCCCGAAGGCAT
53502648 TTGTGCGAGATACTAAA
64 TTGTGCGAGATACTAAA
* * ** * *
53502665 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCA-TT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTT
* *
53502729 GTGTGAGTTACTAAA
66 GTGCGAGATACTAAA
* * *
53502744 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
53502770 AACGAGGAGC
Statistics
Matches: 157, Mismatches: 22, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
79 38 0.24
80 102 0.65
81 16 0.10
82 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:53502787 original size:79 final size:80
Alignment explanation
Indices: 53502558--53502802 Score: 203
Period size: 80 Copynumber: 3.1 Consensus size: 80
53502548 GGACTAAGAT
* * * * ** **
53502558 CCGAAGG-CATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCATTTGTGCGA-GATA
1 CCGAAGGCCA-TTGTGCGAGATACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGC
*
53502620 CAAATTCCGGGTTAAGCC
64 CAAA-TCCGGGTTAAGTC
* * * ** ** **
53502638 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCCA
*
53502703 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * * *
53502718 CCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCCA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCCA
* *
53502782 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
53502796 CCGAAGG
1 CCGAAGG
53502803 TACGTGATTT
Statistics
Matches: 136, Mismatches: 26, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
78 14 0.10
79 48 0.35
80 67 0.49
81 7 0.05
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCCA
AATCCGGGTTAAGTC
Found at i:53505957 original size:26 final size:26
Alignment explanation
Indices: 53505928--53505987 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
53505918 AGTAATAATT
* *
53505928 AGGAAGTTCACAAAGAACTTTTAACC
1 AGGAAGCTCACAAAGAACCTTTAACC
* *
53505954 AGGAAGCTCACAAAGAGCCTTTAATC
1 AGGAAGCTCACAAAGAACCTTTAACC
53505980 AGG-AGCTC
1 AGGAAGCTC
53505988 TGAATAGCCA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
25 5 0.17
26 25 0.83
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (26 bp):
AGGAAGCTCACAAAGAACCTTTAACC
Found at i:53510454 original size:20 final size:19
Alignment explanation
Indices: 53510429--53510473 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
53510419 AAGGACTAAA
53510429 ATGAAAAGTCGTAAAATTTT
1 ATGAAAAGTC-TAAAATTTT
* *
53510449 ATGAAAAATTCTGAAATTTT
1 ATG-AAAAGTCTAAAATTTT
53510469 ATGAA
1 ATGAA
53510474 TATATGTGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 2 0.09
20 14 0.64
21 6 0.27
ACGTcount: A:0.47, C:0.04, G:0.13, T:0.36
Consensus pattern (19 bp):
ATGAAAAGTCTAAAATTTT
Found at i:53510729 original size:37 final size:37
Alignment explanation
Indices: 53510688--53510761 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
53510678 CTAGACAACA
*
53510688 CTAATTCGAGGTTAGATCGAGGAAAAGAAAAGATTTC
1 CTAATTCAAGGTTAGATCGAGGAAAAGAAAAGATTTC
53510725 CTAATTCAAGGTTAGATCGAGGAAAAGAAAAGATTTC
1 CTAATTCAAGGTTAGATCGAGGAAAAGAAAAGATTTC
53510762 AAATTAGTAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.42, C:0.11, G:0.23, T:0.24
Consensus pattern (37 bp):
CTAATTCAAGGTTAGATCGAGGAAAAGAAAAGATTTC
Found at i:53526107 original size:25 final size:25
Alignment explanation
Indices: 53526079--53526166 Score: 86
Period size: 25 Copynumber: 3.3 Consensus size: 25
53526069 TGCTAAATAA
53526079 ATTAAAAAAATAAAGAACTATACAC
1 ATTAAAAAAATAAAGAACTATACAC
* * * *
53526104 ATTAAAAAATAAAAAAGCTAATGCTAAATAA
1 ATT-AAAAA-AATAAAG--AA--CTATACAC
53526135 ATTAAAAAAATAAAGAACTATACAC
1 ATTAAAAAAATAAAGAACTATACAC
53526160 ATTAAAA
1 ATTAAAA
53526167 TATAAAAAAG
Statistics
Matches: 49, Mismatches: 8, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
25 15 0.31
26 5 0.10
27 8 0.16
29 8 0.16
30 5 0.10
31 8 0.16
ACGTcount: A:0.65, C:0.09, G:0.05, T:0.22
Consensus pattern (25 bp):
ATTAAAAAAATAAAGAACTATACAC
Found at i:53526110 original size:24 final size:24
Alignment explanation
Indices: 53526083--53526172 Score: 72
Period size: 24 Copynumber: 3.4 Consensus size: 24
53526073 AAATAAATTA
53526083 AAAAAATAAAGAACTATACACATT
1 AAAAAATAAAGAACTATACACATT
* * *
53526107 AAAAAATAAAAAAGCTAATGCTAAATAAATT
1 AAAAAAT---AAAG--AA--CTATACACATT
53526138 AAAAAAATAAAGAACTATACACATT
1 -AAAAAATAAAGAACTATACACATT
*
53526163 AAAATATAAA
1 AAAAAATAAA
53526173 AAAGCTTAAT
Statistics
Matches: 51, Mismatches: 7, Indels: 16
0.69 0.09 0.22
Matches are distributed among these distances:
24 16 0.31
25 8 0.16
27 6 0.12
29 6 0.12
31 8 0.16
32 7 0.14
ACGTcount: A:0.66, C:0.09, G:0.04, T:0.21
Consensus pattern (24 bp):
AAAAAATAAAGAACTATACACATT
Found at i:53526118 original size:31 final size:31
Alignment explanation
Indices: 53526083--53526175 Score: 85
Period size: 31 Copynumber: 3.2 Consensus size: 31
53526073 AAATAAATTA
*
53526083 AAAAAATAAAGAACTATACACATTAAAAAAT
1 AAAAAATAAAGAACTATACACATTAAAATAT
* *
53526114 AAAAAAGCTAATG--C--TA-A-A-TAAATTA-
1 AAAAAA--TAAAGAACTATACACATTAAAATAT
53526139 AAAAAATAAAGAACTATACACATTAAAATAT
1 AAAAAATAAAGAACTATACACATTAAAATAT
53526170 AAAAAA
1 AAAAAA
53526176 GCTTAATTGA
Statistics
Matches: 47, Mismatches: 5, Indels: 20
0.65 0.07 0.28
Matches are distributed among these distances:
23 4 0.09
25 7 0.15
26 5 0.11
27 3 0.06
28 2 0.04
29 3 0.06
30 6 0.13
31 13 0.28
33 4 0.09
ACGTcount: A:0.67, C:0.09, G:0.04, T:0.20
Consensus pattern (31 bp):
AAAAAATAAAGAACTATACACATTAAAATAT
Found at i:53526133 original size:56 final size:56
Alignment explanation
Indices: 53526067--53526178 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 56
53526057 TTTAAAAATG
53526067 AATGCTAAATAAATTAAAAAAATAAAGAACTATACACATTAAAAAATAAAAAAGCT
1 AATGCTAAATAAATTAAAAAAATAAAGAACTATACACATTAAAAAATAAAAAAGCT
*
53526123 AATGCTAAATAAATTAAAAAAATAAAGAACTATACACATTAAAATATAAAAAAGCT
1 AATGCTAAATAAATTAAAAAAATAAAGAACTATACACATTAAAAAATAAAAAAGCT
53526179 TAATTGAAAT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.63, C:0.09, G:0.05, T:0.22
Consensus pattern (56 bp):
AATGCTAAATAAATTAAAAAAATAAAGAACTATACACATTAAAAAATAAAAAAGCT
Found at i:53534031 original size:44 final size:44
Alignment explanation
Indices: 53533981--53534065 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
53533971 TATATATTAG
* *
53533981 GCATCTGAGCTCATT-AAGTTGGCCCAAGTTCATTATGGATGCGA
1 GCATCTGAACTCATTGAA-TTGGCCCAAGTTCATAATGGATGCGA
* * *
53534025 GCATCTGAACTCGTTGAATTGGTCCGAGTTCATAATGGATG
1 GCATCTGAACTCATTGAATTGGCCCAAGTTCATAATGGATG
53534066 TGATACATGT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 33 0.94
45 2 0.06
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.31
Consensus pattern (44 bp):
GCATCTGAACTCATTGAATTGGCCCAAGTTCATAATGGATGCGA
Found at i:53536723 original size:27 final size:27
Alignment explanation
Indices: 53536701--53536914 Score: 268
Period size: 27 Copynumber: 7.9 Consensus size: 27
53536691 AAAATTATTA
*
53536701 AAATACCCCTGTATGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
53536728 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
53536755 AAATACCCTTGTAGGGTAGAAATACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
53536782 AAATATCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
53536809 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * *
53536836 AAATACCCTTGTAGGGAAGAAATA-TCG
1 AAATACCCCTGTAGGGTAGAATTACT-G
* *
53536863 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * * * *
53536890 AGATGCCCTTGTGGGGTAAAATTAC
1 AAATACCCCTGTAGGGTAGAATTAC
53536915 CATTTTGCCC
Statistics
Matches: 160, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
27 160 1.00
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACTG
Found at i:53536923 original size:27 final size:27
Alignment explanation
Indices: 53536893--53536958 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
53536883 ATTACCGAGA
*
53536893 TGCCCTTGTGGGGTAAAATTACCATTT
1 TGCCCTTGTGGGGTAAAATGACCATTT
* * * *
53536920 TGCCCCTAG-GGTGTCAAATGACTATTT
1 TG-CCCTTGTGGGGTAAAATGACCATTT
53536947 TGCCCTTGTGGG
1 TGCCCTTGTGGG
53536959 CAAGTGACTG
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
26 5 0.17
27 20 0.67
28 5 0.17
ACGTcount: A:0.18, C:0.21, G:0.26, T:0.35
Consensus pattern (27 bp):
TGCCCTTGTGGGGTAAAATGACCATTT
Found at i:53537481 original size:22 final size:22
Alignment explanation
Indices: 53537429--53537492 Score: 78
Period size: 22 Copynumber: 2.9 Consensus size: 22
53537419 GCCAATTATT
*
53537429 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTTTGTGCCAAC
*
53537451 CT-ACATATGGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
53537473 CTGATTATGG-TTGTGTGCCA
1 CTGATTATGGCTT-TGTGCCA
53537493 TTATTGTGGG
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
21 3 0.08
22 32 0.89
23 1 0.03
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:53537758 original size:6 final size:6
Alignment explanation
Indices: 53537749--53537854 Score: 65
Period size: 6 Copynumber: 17.2 Consensus size: 6
53537739 TTGCATTCAC
*
53537749 ATTCTG ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG
* * * ** * *
53537798 -TCACCTA ATTCTG ATTCTA ATTCAA ATTTTG ATTCTG -TCACCTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
53537848 ATTCTG A
1 ATTCTG A
53537855 ATCTCATTTT
Statistics
Matches: 77, Mismatches: 14, Indels: 18
0.71 0.13 0.17
Matches are distributed among these distances:
5 4 0.05
6 62 0.81
7 8 0.10
8 3 0.04
ACGTcount: A:0.22, C:0.20, G:0.13, T:0.45
Consensus pattern (6 bp):
ATTCTG
Found at i:53537780 original size:25 final size:25
Alignment explanation
Indices: 53537752--53537820 Score: 102
Period size: 25 Copynumber: 2.8 Consensus size: 25
53537742 CATTCACATT
*
53537752 CTGATTCTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGATTCTGTCAC
*
53537777 CTGATACTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGTCAC
* *
53537802 CTAATTCTGATTCTAATTC
1 CTGATTCTGATTCTGATTC
53537821 AAATTTTGAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.20, C:0.22, G:0.13, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTGTCAC
Found at i:53537808 original size:19 final size:19
Alignment explanation
Indices: 53537786--53537853 Score: 70
Period size: 19 Copynumber: 3.6 Consensus size: 19
53537776 CCTGATACTG
53537786 ATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGTCACCTA
*
53537805 ATTCTGATTCTAATTCA---A
1 ATTCTGATTCT--GTCACCTA
* *
53537823 ATTTTGATTCTGTCACCTG
1 ATTCTGATTCTGTCACCTA
53537842 ATTCTGATTCTG
1 ATTCTGATTCTG
53537854 AATCTCATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
16 3 0.08
18 11 0.28
19 22 0.56
21 3 0.08
ACGTcount: A:0.22, C:0.21, G:0.12, T:0.46
Consensus pattern (19 bp):
ATTCTGATTCTGTCACCTA
Found at i:53537864 original size:37 final size:36
Alignment explanation
Indices: 53537790--53537870 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 36
53537780 ATACTGATTC
53537790 TGATTCTGTCACCTAATTCTGATTCTAATTCAAATTT
1 TGATTCTGTCACCTAATTCTGATTCTAATTC-AATTT
*
53537827 TGATTCTGTCACCTGATTCTGATTCTGAATCTC-ATTT
1 TGATTCTGTCACCTAATTCTGATTCT-AAT-TCAATTT
*
53537864 TTATTCT
1 TGATTCT
53537871 AGTTCTGATA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
37 35 0.88
38 3 0.08
39 2 0.05
ACGTcount: A:0.22, C:0.20, G:0.10, T:0.48
Consensus pattern (36 bp):
TGATTCTGTCACCTAATTCTGATTCTAATTCAATTT
Found at i:53542674 original size:19 final size:19
Alignment explanation
Indices: 53542633--53542677 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
53542623 CAGGCTGAAG
* * *
53542633 ACACGGGCATGTCCAAGCT
1 ACACGGGCATCTCCAACCC
*
53542652 ACACGGGCATCTGCAACCC
1 ACACGGGCATCTCCAACCC
53542671 ACACGGG
1 ACACGGG
53542678 TGTGTGACTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.27, C:0.36, G:0.27, T:0.11
Consensus pattern (19 bp):
ACACGGGCATCTCCAACCC
Found at i:53544741 original size:49 final size:49
Alignment explanation
Indices: 53544654--53544796 Score: 227
Period size: 49 Copynumber: 3.0 Consensus size: 49
53544644 CTTTCACTTC
* * *
53544654 GCCATTCGGCCTTGT--CATATATATATACTTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACATTG
*
53544701 GCCATTCGGCCTTATCACATTTACATACACTTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACATTG
*
53544750 GCCATTCGGCCTTATCACCTATACATACACTTTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACAT
53544797 AAAATCCTAA
Statistics
Matches: 88, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
47 14 0.16
49 74 0.84
ACGTcount: A:0.27, C:0.30, G:0.08, T:0.35
Consensus pattern (49 bp):
GCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACATTG
Found at i:53547912 original size:57 final size:57
Alignment explanation
Indices: 53547842--53547950 Score: 164
Period size: 57 Copynumber: 1.9 Consensus size: 57
53547832 ATGTCTACTG
* *
53547842 ACTGATCTCGCACACATAGTGCTCGGTTGAAGAACTCACACACATAGTGCCTCAACT
1 ACTGATCTCGCACACATAGTGCTCGATTGAAGAACTCACACACACAGTGCCTCAACT
* * **
53547899 ACTGATCTGGCACACATAGTGCTCGATTGAAGAGCTTGCACACACAGTGCCT
1 ACTGATCTCGCACACATAGTGCTCGATTGAAGAACTCACACACACAGTGCCT
53547951 TATAATTCCA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 46 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (57 bp):
ACTGATCTCGCACACATAGTGCTCGATTGAAGAACTCACACACACAGTGCCTCAACT
Found at i:53548026 original size:40 final size:40
Alignment explanation
Indices: 53547958--53548149 Score: 291
Period size: 40 Copynumber: 4.8 Consensus size: 40
53547948 CCTTATAATT
* * **
53547958 CCAGCACGAATGC-CTTCGAGG-TTTAGCCC-GAGTATATTA
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGA-CATAACA
53547997 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
53548037 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
* *
53548077 CCAGCACGAATGCTCTTCAGGACTTAGCCCAGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
53548117 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGA
53548150 TATATAACTC
Statistics
Matches: 142, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 15 0.11
40 125 0.88
41 2 0.01
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.19
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
Found at i:53549834 original size:49 final size:49
Alignment explanation
Indices: 53549747--53549889 Score: 218
Period size: 49 Copynumber: 3.0 Consensus size: 49
53549737 CTTCCACTTC
* * *
53549747 GCCATTCGGCCTTGT--CATATATATATACTTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACATTG
*
53549794 GCCATTCGGCCTTATCACATTTACATACACTTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACATTG
* *
53549843 GTCATTCGGCCTTATCACGTATACATACACTTTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACAT
53549890 AAAATCCTAA
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
47 14 0.16
49 73 0.84
ACGTcount: A:0.27, C:0.29, G:0.09, T:0.36
Consensus pattern (49 bp):
GCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACATTG
Found at i:53557315 original size:43 final size:43
Alignment explanation
Indices: 53557254--53557354 Score: 184
Period size: 43 Copynumber: 2.3 Consensus size: 43
53557244 CTATTCGGGC
53557254 CTTCGAGCCTAGCAGGCTATAATGCCAGTGAGTTAATATCAGG
1 CTTCGAGCCTAGCAGGCTATAATGCCAGTGAGTTAATATCAGG
* *
53557297 CTTCGAGCCTAGCAGGCTATAATGCCGGTGAGTTAATATCGGG
1 CTTCGAGCCTAGCAGGCTATAATGCCAGTGAGTTAATATCAGG
53557340 CTTCGAGCCTAGCAG
1 CTTCGAGCCTAGCAG
53557355 CCGTAATGCC
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (43 bp):
CTTCGAGCCTAGCAGGCTATAATGCCAGTGAGTTAATATCAGG
Found at i:53557964 original size:16 final size:18
Alignment explanation
Indices: 53557933--53557965 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
53557923 AACTCGTCAC
53557933 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
53557951 ACTAT-TAT-GTTTTGG
1 ACTATCTATCGTTTTGG
53557966 AATTTGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:53564926 original size:93 final size:93
Alignment explanation
Indices: 53564798--53564968 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
53564788 GCCCCTAAGT
* * * *
53564798 GAACTCGGACTCAACTCAATGAGCTTGGACGTTCGCATCCATAAGTGAACTCGGACTTAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTTGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
53564863 TGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
53564891 GAACTCGGACTCAACTCAACGAG-TTCGAACATTCGCATCCGTAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTT-GAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
53564955 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
53564969 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTTGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:53564984 original size:46 final size:46
Alignment explanation
Indices: 53564793--53564970 Score: 166
Period size: 46 Copynumber: 3.8 Consensus size: 46
53564783 AACCCGCCCC
* *
53564793 TAAGTGAACTCGGACTCAACTCAATGAGCTT-GGACGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACGCTCGCATCCA
* * * *
53564839 TAAGTGAACTCGGACTTAACTCAATGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CATCCA
* * * ** *
53564887 TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCA
*
53564932 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
53564971 AACCATCCTA
Statistics
Matches: 105, Mismatches: 19, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 4 0.04
46 63 0.60
47 28 0.27
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCA
Found at i:53567681 original size:47 final size:47
Alignment explanation
Indices: 53567603--53568058 Score: 723
Period size: 47 Copynumber: 9.6 Consensus size: 47
53567593 CCCTTCGGGA
* * * * * *
53567603 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
53567650 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
53567697 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
53567744 CTTATCACATATATAAACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
53567791 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
53567840 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
53567887 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
53567936 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
53567983 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
53568032 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
53568059 TATTCAAATA
Statistics
Matches: 381, Mismatches: 22, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
47 246 0.65
49 135 0.35
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:53567841 original size:96 final size:96
Alignment explanation
Indices: 53567603--53568058 Score: 794
Period size: 96 Copynumber: 4.8 Consensus size: 96
53567593 CCCTTCGGGA
* * * * *
53567603 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
53567666 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
53567697 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAA
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
53567760 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
53567791 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
53567856 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
53567887 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
53567952 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
53567983 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
53568048 ACTTTCACATT
66 ACTTTCACATT
53568059 TATTCAAATA
Statistics
Matches: 343, Mismatches: 15, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
93 1 0.00
94 90 0.26
96 252 0.73
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:53567859 original size:143 final size:141
Alignment explanation
Indices: 53567603--53568058 Score: 723
Period size: 143 Copynumber: 3.2 Consensus size: 141
53567593 CCCTTCGGGA
* * * * * * * *
53567603 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATAAACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACAC
53567668 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
53567733 GGCTATTAGGC
131 GGCCATTAGGC
*
53567744 CTTATCACATATATAAACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATAAACTTTCACATTCATCACATCGGCCATTCGGCCTTATCAC--ATATATAC
* *
53567809 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
53567874 TCGGCCATTAGGC
129 TCGGCCATTAGGC
53567887 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATA-A-ACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
53567952 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
* *
53568017 CATTGGCCATTCGGC
127 CATCGGCCATTAGGC
*
53568032 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATAAACTTTCACATT
53568059 TATTCAAATA
Statistics
Matches: 291, Mismatches: 18, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
141 46 0.16
143 154 0.53
144 1 0.00
145 90 0.31
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATAAACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:53576651 original size:46 final size:45
Alignment explanation
Indices: 53576582--53576755 Score: 147
Period size: 46 Copynumber: 3.8 Consensus size: 45
53576572 GTAACCCGCC
* *
53576582 CCTAAGTGAACTCAGACACAACTCAACGAGCTCGGGTGTTCACAT
1 CCTAAGTGAACTCAGACTCAACTCAACGAGTTCGGGTGTTCACAT
* *
53576627 CCATAAGTGAACTCGGACTCAACTCAAAGAGTTCGGATGCCTAGTT-ACAT
1 CC-TAAGTGAACTCAGACTCAACTCAACGAGTTCGG--G--T-GTTCACAT
* * * **** *
53576677 -CTCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCTAAGTGAACTCAGACTCAACTCAACGAGTTCGGGTGTTCACAT
*
53576720 CCGTAAGTGAATTCAGACTCAACTCAACGAGTTCGG
1 CC-TAAGTGAACTCAGACTCAACTCAACGAGTTCGG
53576756 ATGCTCAACC
Statistics
Matches: 102, Mismatches: 17, Indels: 19
0.74 0.12 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 4 0.04
46 54 0.53
47 26 0.25
48 3 0.03
49 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
CCTAAGTGAACTCAGACTCAACTCAACGAGTTCGGGTGTTCACAT
Found at i:53576701 original size:93 final size:93
Alignment explanation
Indices: 53576589--53576759 Score: 234
Period size: 93 Copynumber: 1.8 Consensus size: 93
53576579 GCCCCTAAGT
**** *
53576589 GAACTCAGACACAACTCAACGAGCTCGGGTGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACACAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
53576654 AGAGTTCGGATGCCTAGTTACATCTCAC
66 AGAGTTCGGATGCCTAGTTACATCTCAC
* * * * * *
53576682 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCGTAAGTGAATTCAGACTCAACTCAA
1 GAACTCAGACACAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
*
53576747 CGAGTTCGGATGC
66 AGAGTTCGGATGC
53576760 TCAACCATCC
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
93 66 1.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACACAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
AGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:53578884 original size:43 final size:43
Alignment explanation
Indices: 53578823--53578938 Score: 180
Period size: 43 Copynumber: 2.7 Consensus size: 43
53578813 CTATTCGAGC
53578823 CTTCGAGCCTAGCAGGCTATAATGCCAGTGAGTTAATATCAGG
1 CTTCGAGCCTAGCAGGCTATAATGCCAGTGAGTTAATATCAGG
*
53578866 CTTCGAGCCTAGCAGGCTATAATGCCGGTGAGTTAATATCAGG
1 CTTCGAGCCTAGCAGGCTATAATGCCAGTGAGTTAATATCAGG
* * * *
53578909 CTTCAAGCCTAACAGGC-GTAATACCAGTGA
1 CTTCGAGCCTAGCAGGCTATAATGCCAGTGA
53578939 ATGAGTTCAG
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
42 10 0.15
43 57 0.85
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.24
Consensus pattern (43 bp):
CTTCGAGCCTAGCAGGCTATAATGCCAGTGAGTTAATATCAGG
Found at i:53583146 original size:24 final size:24
Alignment explanation
Indices: 53583107--53583181 Score: 114
Period size: 24 Copynumber: 3.1 Consensus size: 24
53583097 AAGTCTGTCA
*
53583107 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
53583131 GGATAGGATTTCGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
53583155 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
53583179 GGA
1 GGA
53583182 CAACGGTGTG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.31, C:0.04, G:0.41, T:0.24
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:53584632 original size:27 final size:26
Alignment explanation
Indices: 53584592--53584698 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 26
53584582 AGGAAGCGTC
*
53584592 CTGGTGGCTA-TGCCACAATTATCTGAT
1 CTGGTGGC-ACTGCCAC-ATTATCTGTT
53584619 CTGGTGGCACTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAT-TATCTGTT
**
53584646 CTGGTGGCTTTGCCACAATTATCTGTT
1 CTGGTGGCACTGCCAC-ATTATCTGTT
* *
53584673 CTGGTGACACTGTCACATTATCTGTT
1 CTGGTGGCACTGCCACATTATCTGTT
53584699 TTAGCAACCA
Statistics
Matches: 70, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
26 13 0.19
27 55 0.79
28 2 0.03
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (26 bp):
CTGGTGGCACTGCCACATTATCTGTT
Found at i:53584676 original size:54 final size:53
Alignment explanation
Indices: 53584592--53584698 Score: 169
Period size: 54 Copynumber: 2.0 Consensus size: 53
53584582 AGGAAGCGTC
*
53584592 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACACTGCCACAT-TATCTGTT
* * *
53584646 CTGGTGGCTTTGCCACAATTATCTGTTCTGGTGACACTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACACTGCCACATTATCTGTT
53584699 TTAGCAACCA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
53 8 0.16
54 41 0.84
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACACTGCCACATTATCTGTT
Found at i:53587940 original size:40 final size:40
Alignment explanation
Indices: 53587903--53588088 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
53587893 GCTACTCGTT
* * *
53587903 CAAATGCCTTCGGGACAT-AGCCGGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
53587943 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
53587983 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
53588023 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
53588064 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
53588089 CATCATTCAA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 111 0.84
41 18 0.14
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:53591469 original size:42 final size:41
Alignment explanation
Indices: 53591365--53591505 Score: 124
Period size: 43 Copynumber: 3.3 Consensus size: 41
53591355 ATCTGAGATA
* *
53591365 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGATATT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCGATTGA-ATT
*
53591407 TACGTATAAGACCATGTCTGGGACATC-GGCATCGTATTTG-ATT
1 T-CGTGTAAGACCATGTCTGGGACA-CAGGCATCG-A-TTGAATT
* * * *
53591450 TCGTGTAAGACCCTATCTGGGATAGAGGCATCGATATTGAATT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCG--ATTGAATT
* *
53591493 ACATGTAAGACCA
1 TCGTGTAAGACCA
53591506 CATCAGGGAT
Statistics
Matches: 81, Mismatches: 11, Indels: 13
0.77 0.10 0.12
Matches are distributed among these distances:
42 30 0.37
43 46 0.57
44 2 0.02
45 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTGGGACACAGGCATCGATTGAATT
Found at i:53594960 original size:28 final size:29
Alignment explanation
Indices: 53594898--53594961 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 29
53594888 ACTTTTTGTA
* * *
53594898 TATTTAAAATTTAGTCTCTCTACTTTTAT
1 TATTAAAAATTTAGTCTCTATACTTTTAC
*
53594927 TTTTAAAAATTTAGTCAT-TATACTTTT-C
1 TATTAAAAATTTAGTC-TCTATACTTTTAC
53594955 TATTAAA
1 TATTAAA
53594962 TACGTTGGTG
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
28 6 0.21
29 22 0.76
30 1 0.03
ACGTcount: A:0.33, C:0.11, G:0.03, T:0.53
Consensus pattern (29 bp):
TATTAAAAATTTAGTCTCTATACTTTTAC
Found at i:53597846 original size:43 final size:43
Alignment explanation
Indices: 53597794--53597880 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
53597784 TTTACTTAGA
53597794 AAAACTACCATTCAGACTATAATTTCAACTTGTATGAATTATG
1 AAAACTACCATTCAGACTATAATTTCAACTTGTATGAATTATG
53597837 AAAACTACCATTCAGACTATAATTTCAACTTGTATGAATTATG
1 AAAACTACCATTCAGACTATAATTTCAACTTGTATGAATTATG
53597880 A
1 A
53597881 TTCACTTAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.34
Consensus pattern (43 bp):
AAAACTACCATTCAGACTATAATTTCAACTTGTATGAATTATG
Found at i:53598004 original size:107 final size:107
Alignment explanation
Indices: 53597876--53598089 Score: 428
Period size: 107 Copynumber: 2.0 Consensus size: 107
53597866 TTGTATGAAT
53597876 TATGATTCACTTAAATCTTCTTTCTTTTTTTAACTATCAAGGAGTACTGTCAACAAAGCTTCCTT
1 TATGATTCACTTAAATCTTCTTTCTTTTTTTAACTATCAAGGAGTACTGTCAACAAAGCTTCCTT
53597941 AGGCAATGGCCAGGAGCTTTACTTGGTTTCATTACTTTTTTA
66 AGGCAATGGCCAGGAGCTTTACTTGGTTTCATTACTTTTTTA
53597983 TATGATTCACTTAAATCTTCTTTCTTTTTTTAACTATCAAGGAGTACTGTCAACAAAGCTTCCTT
1 TATGATTCACTTAAATCTTCTTTCTTTTTTTAACTATCAAGGAGTACTGTCAACAAAGCTTCCTT
53598048 AGGCAATGGCCAGGAGCTTTACTTGGTTTCATTACTTTTTTA
66 AGGCAATGGCCAGGAGCTTTACTTGGTTTCATTACTTTTTTA
53598090 GGTTCATCAA
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
107 107 1.00
ACGTcount: A:0.25, C:0.19, G:0.14, T:0.42
Consensus pattern (107 bp):
TATGATTCACTTAAATCTTCTTTCTTTTTTTAACTATCAAGGAGTACTGTCAACAAAGCTTCCTT
AGGCAATGGCCAGGAGCTTTACTTGGTTTCATTACTTTTTTA
Found at i:53603921 original size:20 final size:20
Alignment explanation
Indices: 53603898--53603947 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
53603888 AAATCCAGAT
53603898 TAAAATACTAAAATTCAGGA
1 TAAAATACTAAAATTCAGGA
* *
53603918 TAAAATCCTGAAATTCAGGA
1 TAAAATACTAAAATTCAGGA
53603938 TAAGAATACT
1 TAA-AATACT
53603948 GATGTGGCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 21 0.81
21 5 0.19
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (20 bp):
TAAAATACTAAAATTCAGGA
Found at i:53607299 original size:18 final size:18
Alignment explanation
Indices: 53607265--53607300 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
53607255 AAAATTTATT
*
53607265 TTTTAAAAAAATTAAAAA
1 TTTTAAAAAAATAAAAAA
*
53607283 TTTTAAAAATATAAAAAA
1 TTTTAAAAAAATAAAAAA
53607301 ACATTTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TTTTAAAAAAATAAAAAA
Found at i:53612151 original size:69 final size:69
Alignment explanation
Indices: 53612034--53612172 Score: 226
Period size: 69 Copynumber: 2.0 Consensus size: 69
53612024 AATAAAAATA
* *
53612034 AATTTTATTTTCGGCTCGAATTTGTGGTCCCAAACCACTGTTTCGATTTCACCAAAATTGGGTTG
1 AATTTTATTTTCGGCTCGAATTTGTGGTCCCAAACAACTGTTTCGATTTCACCAAAATTGGGCTG
53612099 TTAC
66 TTAC
* *
53612103 AATTTTATTTTCGGCTCGGATTTGTGGTCCCGAACAACTG-TTCTGATTTCACCAAAATTGGGCT
1 AATTTTATTTTCGGCTCGAATTTGTGGTCCCAAACAACTGTTTC-GATTTCACCAAAATTGGGCT
53612167 GTTAC
65 GTTAC
53612172 A
1 A
53612173 GTGAATGAAT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
68 3 0.05
69 62 0.95
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (69 bp):
AATTTTATTTTCGGCTCGAATTTGTGGTCCCAAACAACTGTTTCGATTTCACCAAAATTGGGCTG
TTAC
Done.