Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 179 of 333
Found at i:58744848 original size:122 final size:122
Alignment explanation
Indices: 58744633--58744984 Score: 636
Period size: 122 Copynumber: 2.9 Consensus size: 122
58744623 GAGCATTGGA
* * *
58744633 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG--ATATGTCCGGGCTAAGACCCGAA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATATCCGGGCTAAGACCCGAA
* *
58744696 GGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
66 GGCAATTATGCAAGTTGATATGTCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
58744753 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATATCCGGGCTAAGACCCGAA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATATCCGGGCTAAGACCCGAA
58744818 GGCAATTATGCAAGTTGATATGTCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
66 GGCAATTATGCAAGTTGATATGTCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
58744875 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATATCCGGGCTAAGACCCGAA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATATCCGGGCTAAGACCCGAA
*
58744940 GGCAATTATGCAAGTTGATATGTCCGGGTTAAGACCCGAAGGCAA
66 GGCAATTATGCAAGTTGATATGTCCGGGCTAAGACCCGAAGGCAA
58744985 ATGTGTTTGC
Statistics
Matches: 224, Mismatches: 6, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
120 38 0.17
122 186 0.83
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (122 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATATCCGGGCTAAGACCCGAA
GGCAATTATGCAAGTTGATATGTCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:58744900 original size:162 final size:161
Alignment explanation
Indices: 58744633--58744984 Score: 625
Period size: 162 Copynumber: 2.2 Consensus size: 161
58744623 GAGCATTGGA
58744633 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATGTCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATGTCCGGGCTAAGACCCGAAGG
*
58744698 CAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG-ATATATCCG
66 CAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGAATATATCCG
*
58744762 GGCTAAGACCCGAAGGCAATTATGCGAGATG
131 GGCTAAGACCCGAAGGCAATTATGCAAGATG
58744793 ATATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATGTCCGGGCTAAGACCCGAA
1 --ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATGTCCGGGCTAAGACCCGAA
58744858 GGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATAT
64 GGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGA-ATATAT
*
58744923 CCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
128 CCGGGCTAAGACCCGAAGGCAATTATGCAAGATG
* *
58744957 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
58744985 ATGTGTTTGC
Statistics
Matches: 183, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
162 145 0.79
164 38 0.21
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (161 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATGTCCGGGCTAAGACCCGAAGG
CAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGAATATATCCG
GGCTAAGACCCGAAGGCAATTATGCAAGATG
Found at i:58753529 original size:40 final size:40
Alignment explanation
Indices: 58753469--58753859 Score: 649
Period size: 40 Copynumber: 9.7 Consensus size: 40
58753459 GAGCATTGGA
*
58753469 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
58753509 ATATGTCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
58753549 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
58753589 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
58753629 ATATATATCC-GGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 --ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
58753670 ATATGTCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
58753710 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
58753750 ATATATCCGGGCTAAGACCCAAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
58753790 ATATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 --ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
58753832 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
58753860 ATGTGTTTGC
Statistics
Matches: 330, Mismatches: 16, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
39 7 0.02
40 249 0.75
41 29 0.09
42 45 0.14
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:58753658 original size:161 final size:162
Alignment explanation
Indices: 58753469--58753859 Score: 757
Period size: 161 Copynumber: 2.4 Consensus size: 162
58753459 GAGCATTGGA
58753469 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATGTCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATGTCCGGGCTAAGACCCGAAGG
58753534 CAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGG
66 CAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGG
*
58753599 GCTAAGACCCGAAGGCAATTATGCGAGATGAT
131 GCTAAGACCCAAAGGCAATTATGCGAGATGAT
58753631 ATATATCC-GGCTAAGACCCGAAGGCAATTATGCAAGTTGATATGTCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATGTCCGGGCTAAGACCCGAAGG
58753695 CAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGG
66 CAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGG
58753760 GCTAAGACCCAAAGGCAATTATGCGAGATGAT
131 GCTAAGACCCAAAGGCAATTATGCGAGATGAT
*
58753792 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATGTCCGGGTTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATGTCCGGGCTAAGACCCGAAGG
58753857 CAA
66 CAA
58753860 ATGTGTTTGC
Statistics
Matches: 226, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
161 160 0.71
162 66 0.29
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (162 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATGTCCGGGCTAAGACCCGAAGG
CAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGG
GCTAAGACCCAAAGGCAATTATGCGAGATGAT
Found at i:58758304 original size:40 final size:40
Alignment explanation
Indices: 58758223--58758404 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
58758213 CAACCAAGTA
** * *
58758223 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
58758262 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
58758302 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
58758342 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
58758382 CCTTCGGGGCTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
58758405 CATCCGAATA
Statistics
Matches: 132, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 13 0.10
40 119 0.90
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:58765233 original size:40 final size:40
Alignment explanation
Indices: 58765038--58765236 Score: 223
Period size: 39 Copynumber: 5.0 Consensus size: 40
58765028 CGGAATTTAA
** *
58765038 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
58765078 CC-GTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
58765117 CCGGAT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
58765155 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
58765195 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
58765235 CC
1 CC
58765237 AGACATCATT
Statistics
Matches: 136, Mismatches: 14, Indels: 18
0.81 0.08 0.11
Matches are distributed among these distances:
38 13 0.10
39 79 0.58
40 32 0.24
41 12 0.09
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:58766432 original size:56 final size:56
Alignment explanation
Indices: 58766365--58766540 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
58766355 TATTAGTTTA
58766365 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
58766421 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
58766477 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
58766533 TTGCCCAT
1 TTGCCCAT
58766541 CATCCCTTGT
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:58773129 original size:79 final size:80
Alignment explanation
Indices: 58773031--58773213 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 80
58773021 TACTCGTTCA
* *
58773031 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
58773094 ATTTAGT-AATTCGCACC
64 ATATAGTCAATTAGCA-C
**
58773111 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
58773175 ATGGTCACTTAGCAC
66 ATAGTCAATTAGCAC
*
58773190 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
58773214 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.63
80 30 0.33
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTCAATTAGCAC
Found at i:58773213 original size:40 final size:40
Alignment explanation
Indices: 58773010--58773213 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
58773000 CGGAATTTAA
** *
58773010 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
58773050 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
58773090 CCGGATTTAGTAATTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
58773129 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
58773169 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
58773209 CCGGA
1 CCGGA
58773214 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:58774408 original size:56 final size:56
Alignment explanation
Indices: 58774341--58774516 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
58774331 TATTAGTTTA
58774341 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
58774397 TTGCCCATGCTTCTTATTTTATTCCTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
58774453 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
58774509 TTGCCCAT
1 TTGCCCAT
58774517 CATCCCTTGT
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
56 117 1.00
ACGTcount: A:0.23, C:0.24, G:0.09, T:0.44
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:58777423 original size:40 final size:40
Alignment explanation
Indices: 58777342--58777523 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
58777332 CAACCAAGTA
** * *
58777342 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
* *
58777381 CCTTCGGGACTTAGCTCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
58777421 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
58777461 CCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
58777501 CCTTCAGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
58777524 CATCCGAATA
Statistics
Matches: 130, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 13 0.10
40 117 0.90
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:58794590 original size:41 final size:44
Alignment explanation
Indices: 58794523--58794640 Score: 118
Period size: 45 Copynumber: 2.7 Consensus size: 44
58794513 ATCTCATATT
* * * *
58794523 GATGCCACTATCCCAAACA-GGTTCTTACACGAATC-CA-AT-GC
1 GATGCCAATGTCCCAGACATGG-TCTTACACGAACCACATATAGC
*
58794564 GATGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATATC
1 GATGCCAATGTCCCAGACATGGTCTTACACG-AACCACATATAGC
* **
58794609 GATGCCAACGTCCCAGATGTGGTCTTACACGA
1 GATGCCAATGTCCCAGACATGGTCTTACACGA
58794641 CAACACAACG
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
41 25 0.39
42 5 0.08
43 2 0.03
44 3 0.05
45 29 0.45
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.23
Consensus pattern (44 bp):
GATGCCAATGTCCCAGACATGGTCTTACACGAACCACATATAGC
Found at i:58807285 original size:24 final size:24
Alignment explanation
Indices: 58807216--58807373 Score: 97
Period size: 24 Copynumber: 6.5 Consensus size: 24
58807206 AATGACATTG
* *
58807216 GCACTAAGTGTGCGGATTTTGAATG
1 GCACTATGTGTGCGGA-TTTGAATA
** *
58807241 GCACTATGTCCGCGGAATTGAATA
1 GCACTATGTGTGCGGATTTGAATA
*
58807265 GCACTATGTGTGCTGATTTGAAT-
1 GCACTATGTGTGCGGATTTGAATA
* * * * *
58807288 GTCAATACGAGTGTGTGGATTTCTAA-G
1 G-CACTA--TGTGTGCGGATTT-GAATA
* * * *
58807315 GCACTATGTGTACAGG-TTAGCATG
1 GCACTATGTGTGC-GGATTTGAATA
*
58807339 GCACTAAGTGTGCGGATTTGAATA
1 GCACTATGTGTGCGGATTTGAATA
58807363 GCACTATGTGT
1 GCACTATGTGT
58807374 ACGAAATCGA
Statistics
Matches: 98, Mismatches: 27, Indels: 17
0.69 0.19 0.12
Matches are distributed among these distances:
23 4 0.04
24 62 0.63
25 15 0.15
26 14 0.14
27 3 0.03
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (24 bp):
GCACTATGTGTGCGGATTTGAATA
Found at i:58813553 original size:49 final size:48
Alignment explanation
Indices: 58813481--58813712 Score: 257
Period size: 49 Copynumber: 4.7 Consensus size: 48
58813471 CTGGTACGCA
* *
58813481 TAGTAGCCTACACTTAGTACTACACATGTGACCAATTATTCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTA-TCAGTACACG
* ** *
58813530 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCAG-TACACG
* * *
58813580 TGGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCA-GTACACG
* * * * * *
58813631 TAGTAGCTTGCACTTAGTACTACACATGCGACCAATTAGCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATC-AGTACACG
*
58813680 TAGTAGCTTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
58813713 TCACAATAGC
Statistics
Matches: 155, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
49 75 0.48
50 43 0.28
51 36 0.23
52 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGTACACG
Found at i:58817155 original size:24 final size:24
Alignment explanation
Indices: 58817003--58817162 Score: 99
Period size: 24 Copynumber: 6.5 Consensus size: 24
58816993 GAAATGACAT
*
58817003 TGGCACTAAGTGTGCGGATTTTGAA
1 TGGCACTATGTGTGCGGA-TTTGAA
** * *
58817028 TGGCACTATGTCCGCGAAATTGAA
1 TGGCACTATGTGTGCGGATTTGAA
* *
58817052 TAGCACTATGTGTGCTGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
* * * * *
58817076 TGTCAATACGAGTGTGTGGATTTCTAA
1 TGGCACTA--TGTGTGCGGATTT-GAA
* * **
58817103 -GGCACTATGTGTACAGG-TTAGCG
1 TGGCACTATGTGTGC-GGATTTGAA
*
58817126 TGGCACTAAGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
*
58817150 TAGCACTATGTGT
1 TGGCACTATGTGT
58817163 ACGAAATCGA
Statistics
Matches: 95, Mismatches: 34, Indels: 13
0.67 0.24 0.09
Matches are distributed among these distances:
23 2 0.02
24 60 0.63
25 16 0.17
26 15 0.16
27 2 0.02
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.32
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTTGAA
Found at i:58822835 original size:14 final size:15
Alignment explanation
Indices: 58822818--58822846 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
58822808 TCACTAAAAT
58822818 TTCACACAT-ATAAA
1 TTCACACATAATAAA
58822832 TTCACACATAATAAA
1 TTCACACATAATAAA
58822847 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:58824679 original size:42 final size:43
Alignment explanation
Indices: 58824609--58824696 Score: 124
Period size: 42 Copynumber: 2.1 Consensus size: 43
58824599 ACATAGTCTT
* * * *
58824609 AAATCAATTATCGATGCCACTGTCCCAGACAGGGTCTTACATG
1 AAATCAAATATCGATGCCAATGTACCAGACAGGGTCTTACACG
*
58824652 AAATCAAATA-CGATGCCAATGTACCAGACATGGTCTTACACG
1 AAATCAAATATCGATGCCAATGTACCAGACAGGGTCTTACACG
58824694 AAA
1 AAA
58824697 AAACATATCG
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
42 31 0.77
43 9 0.22
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (43 bp):
AAATCAAATATCGATGCCAATGTACCAGACAGGGTCTTACACG
Found at i:58832306 original size:46 final size:46
Alignment explanation
Indices: 58832185--58832314 Score: 145
Period size: 46 Copynumber: 2.8 Consensus size: 46
58832175 TGTAACCCGC
* * * *
58832185 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGCCTAGAT
* *** * *
58832231 ACATCTCTCGAACTCAAACTCAACTCAACGAGTTCGGACG-CTCGCAT
1 CCATAAGT-GAACTCAGACTCAACTCAACGAGTTCGGACGCCTAG-AT
58832278 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
58832315 GGCCCAAATA
Statistics
Matches: 67, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
46 35 0.52
47 32 0.48
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGCCTAGAT
Found at i:58838107 original size:27 final size:27
Alignment explanation
Indices: 58838077--58838254 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
58838067 ATATTGAGTC
* * * *
58838077 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
58838104 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
58838131 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
58838159 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
58838186 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
58838213 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
58838240 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
58838255 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:58838216 original size:82 final size:81
Alignment explanation
Indices: 58838098--58838253 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
58838088 TGCTATATAA
* *
58838098 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
58838163 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
58838180 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
58838244 CACTTAGTGC
65 CACTTAGTGC
58838254 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:58858807 original size:27 final size:27
Alignment explanation
Indices: 58858777--58858954 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
58858767 ATATTGAGTC
* * * *
58858777 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
58858804 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
58858831 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
58858859 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
58858886 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
58858913 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
58858940 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
58858955 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:58858916 original size:82 final size:81
Alignment explanation
Indices: 58858798--58858953 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
58858788 TGCTATATAA
* *
58858798 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
58858863 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
58858880 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
58858944 CACTTAGTGC
65 CACTTAGTGC
58858954 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:58863200 original size:44 final size:42
Alignment explanation
Indices: 58863137--58863248 Score: 136
Period size: 44 Copynumber: 2.6 Consensus size: 42
58863127 ATGTGTATTG
58863137 GTGTAAGACCACATCTGGGACGTTGGAATCGAT-TTATAATTTAC
1 GTGTAAGACCACATCTGGGACGTTGGAATC-ATATT-TAA-TTAC
** * * *
58863181 GTGTAAGACCATGTCTGGGACATTGGCATCATATTTGATTAC
1 GTGTAAGACCACATCTGGGACGTTGGAATCATATTTAATTAC
*
58863223 ATGTAAGACCACATCTGGGACGTTGG
1 GTGTAAGACCACATCTGGGACGTTGG
58863249 CGTTGTACGA
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
42 26 0.45
43 4 0.07
44 28 0.48
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCACATCTGGGACGTTGGAATCATATTTAATTAC
Found at i:58863240 original size:42 final size:44
Alignment explanation
Indices: 58863138--58863249 Score: 140
Period size: 42 Copynumber: 2.6 Consensus size: 44
58863128 TGTGTATTGG
* *
58863138 TGTAAGACCACATCTGGGACGTTGGAATCGATTTATAATTTACG
1 TGTAAGACCACATCTGGGACGTTGGCATCGATTTATAATTTACA
** * *
58863182 TGTAAGACCATGTCTGGGACATTGGCATC-ATATT-TGA-TTACA
1 TGTAAGACCACATCTGGGACGTTGGCATCGAT-TTATAATTTACA
58863224 TGTAAGACCACATCTGGGACGTTGGC
1 TGTAAGACCACATCTGGGACGTTGGC
58863250 GTTGTACGAA
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
42 27 0.47
43 4 0.07
44 27 0.47
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (44 bp):
TGTAAGACCACATCTGGGACGTTGGCATCGATTTATAATTTACA
Found at i:58873745 original size:85 final size:85
Alignment explanation
Indices: 58873641--58873880 Score: 408
Period size: 85 Copynumber: 2.8 Consensus size: 85
58873631 TTAACATGTA
* *
58873641 TAACTGTGGCATATCCACTTAGCACCATGTTACATGTTTAACTGTGGTATATCAACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCATGTTACATGTTTAACTGTGGTATATCCACTTAGCACCA
*
58873706 TGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
* * *
58873726 TAACCGTGGCATATGCACTTAGCACCATGTTACATGTTTAACCGTGGTATATCCACTTAGAACCA
1 TAACCGTGGCATATCCACTTAGCACCATGTTACATGTTTAACTGTGGTATATCCACTTAGCACCA
58873791 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
* *
58873811 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATAACTGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCATGTTACATGTTTAACTGTGGTATATCCACTTAGCACCA
58873876 CGTTA
66 CGTTA
58873881 CACATATAAC
Statistics
Matches: 144, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 144 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCATGTTACATGTTTAACTGTGGTATATCCACTTAGCACCA
CGTTAATGAATCAATATATG
Found at i:58873896 original size:123 final size:123
Alignment explanation
Indices: 58873726--58874132 Score: 526
Period size: 123 Copynumber: 3.2 Consensus size: 123
58873716 TCAATATATG
* * * * * *
58873726 TAACCGTGGCATATGCACTTAGCACCATGTTACATGTTTAACCGTGGTATATCCACTTAGAACCA
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATATATAACCGTGGTATATCCACTTAGCACCA
58873791 CGTTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTA
66 CGTTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTA
* * *
58873849 TAACTGTGGTATATCCACTTAGCACCACGTTACACATATAACCGTGGTATATCTACTTAGCACCA
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATATATAACCGTGGTATATCCACTTAGCACCA
* *
58873914 CATTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTT
66 CGTTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTA
* *
58873972 TAACCGTGGTATATCCACTTAGCACCACATTAATGAATCAATATATGTAACCGTGGCATATCCAC
1 TAACCGTGGTATATCCACTTAGCACCAC-GT--T--A-C-ATATA--TAACCGTGGTATATCCAC
* * * * * * *
58874037 TTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATATCCAGTTAGCACCATGTTACAA
57 TTAGCACCACGTTA-ATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTTACAT
58874102 GTA
121 GTA
**
58874105 TAATAGTGGTATATCCACTTAGCACCAC
1 TAACCGTGGTATATCCACTTAGCACCAC
58874133 ATTTTTTTCA
Statistics
Matches: 247, Mismatches: 27, Indels: 10
0.87 0.10 0.04
Matches are distributed among these distances:
123 139 0.56
124 1 0.00
126 1 0.00
128 1 0.00
129 1 0.00
130 4 0.02
132 29 0.12
133 71 0.29
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (123 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATATATAACCGTGGTATATCCACTTAGCACCA
CGTTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTA
Found at i:58873992 original size:208 final size:208
Alignment explanation
Indices: 58873634--58874057 Score: 731
Period size: 208 Copynumber: 2.0 Consensus size: 208
58873624 TTTCAAATTA
* ** * *
58873634 ACATGTATAACTGTGGCATATCCACTTAGCACCATGTTACATGTTTAACTGTGGTATATCAACTT
1 ACATGTATAACTGTGGCATATCCACTTAGCACCACGTTACACATATAACCGTGGTATATCAACTT
** * *
58873699 AGCACCATGTTAATGAATCAATATATGTAACCGTGGCATATGCACTTAGCACCATGTTACATGTT
66 AGCACCACATTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTT
*
58873764 TAACCGTGGTATATCCACTTAGAACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
131 TAACCGTGGTATATCCACTTAGAACCACATTAATGAATCAATATATGTAACCGTGGCATATCCAC
58873829 TTAGCACCACGTT
196 TTAGCACCACGTT
* *
58873842 ACATGTATAACTGTGGTATATCCACTTAGCACCACGTTACACATATAACCGTGGTATATCTACTT
1 ACATGTATAACTGTGGCATATCCACTTAGCACCACGTTACACATATAACCGTGGTATATCAACTT
58873907 AGCACCACATTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTT
66 AGCACCACATTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTT
*
58873972 TAACCGTGGTATATCCACTTAGCACCACATTAATGAATCAATATATGTAACCGTGGCATATCCAC
131 TAACCGTGGTATATCCACTTAGAACCACATTAATGAATCAATATATGTAACCGTGGCATATCCAC
58874037 TTAGCACCACGTT
196 TTAGCACCACGTT
58874050 ACATGTAT
1 ACATGTAT
58874058 CAATATGTGT
Statistics
Matches: 203, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
208 203 1.00
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (208 bp):
ACATGTATAACTGTGGCATATCCACTTAGCACCACGTTACACATATAACCGTGGTATATCAACTT
AGCACCACATTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTT
TAACCGTGGTATATCCACTTAGAACCACATTAATGAATCAATATATGTAACCGTGGCATATCCAC
TTAGCACCACGTT
Found at i:58873999 original size:38 final size:40
Alignment explanation
Indices: 58873930--58874132 Score: 153
Period size: 38 Copynumber: 4.8 Consensus size: 40
58873920 TGAATCAATA
*
58873930 TATGTAACCGTGGCATATCCACTTAGCACCACGTTACATG
1 TATGTAACCGTGGTATATCCACTTAGCACCACGTTACATG
* *
58873970 T-T-TAACCGTGGTATATCCACTTAGCACCACATTAATGAATCAATA
1 TATGTAACCGTGGTATATCCACTTAGCACCAC-GT--T--A-C-ATG
*
58874015 TATGTAACCGTGGCATATCCACTTAGCACCACGTTACATG
1 TATGTAACCGTGGTATATCCACTTAGCACCACGTTACATG
* * * *
58874055 TATCAATATGTGTAATCGTGGTATATCCAGTTAGCACCATGTTACAAG
1 ------TA--TGTAACCGTGGTATATCCACTTAGCACCACGTTACATG
**
58874103 TA--TAATAGTGGTATATCCACTTAGCACCAC
1 TATGTAACCGTGGTATATCCACTTAGCACCAC
58874133 ATTTTTTTCA
Statistics
Matches: 132, Mismatches: 14, Indels: 36
0.73 0.08 0.20
Matches are distributed among these distances:
38 52 0.39
39 2 0.02
40 3 0.02
41 2 0.02
42 3 0.02
43 1 0.01
44 2 0.02
45 3 0.02
46 4 0.03
47 27 0.20
48 33 0.25
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (40 bp):
TATGTAACCGTGGTATATCCACTTAGCACCACGTTACATG
Found at i:58874053 original size:85 final size:85
Alignment explanation
Indices: 58873849--58874057 Score: 364
Period size: 85 Copynumber: 2.5 Consensus size: 85
58873839 GTTACATGTA
* * ** *
58873849 TAACTGTGGTATATCCACTTAGCACCACGTTACACATATAACCGTGGTATATCTACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATAACCGTGGTATATCCACTTAGCACCA
58873914 CATTAATGAATCAATATATG
66 CATTAATGAATCAATATATG
*
58873934 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATAACCGTGGTATATCCACTTAGCACCA
58873999 CATTAATGAATCAATATATG
66 CATTAATGAATCAATATATG
58874019 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTAT
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTAT
58874058 CAATATGTGT
Statistics
Matches: 117, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 117 1.00
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATAACCGTGGTATATCCACTTAGCACCA
CATTAATGAATCAATATATG
Found at i:58874081 original size:48 final size:48
Alignment explanation
Indices: 58873967--58874109 Score: 191
Period size: 48 Copynumber: 3.0 Consensus size: 48
58873957 ACCACGTTAC
* * *
58873967 ATGTTTAACCGTGGTATATCCACTTAGCACCACATTA-ATGAATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* *
58874014 ATATGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* * * *
58874062 ATGTGTAATCGTGGTATATCCAGTTAGCACCATGTTACAAGTAT-AAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
58874109 A
1 A
58874110 GTGGTATATC
Statistics
Matches: 84, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 37 0.44
48 47 0.56
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.31
Consensus pattern (48 bp):
ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:58874124 original size:133 final size:132
Alignment explanation
Indices: 58873887--58874135 Score: 372
Period size: 133 Copynumber: 1.9 Consensus size: 132
58873877 GTTACACATA
* *
58873887 TAACCGTGGTATATCTACTTAGCACCACATTAATGAATCAATATATGTAACCGTGGCATATCCAC
1 TAACCGTGGCATATCCACTTAGCACCACATTAATGAATCAATATATGTAACCGTGGCATATCCAC
* * *
58873952 TTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACATTAATGAATCAATATA
66 TTAGCACCACGTTACAAGTATAACAGTGGTATATCCACTTAGCACCACATTAATGAATCAATATA
58874017 TG
131 TG
* * * * *
58874019 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATATCCA
1 TAACCGTGGCATATCCACTTAGCACCACATTA-ATGAATCAATATATGTAACCGTGGCATATCCA
* * *
58874084 GTTAGCACCATGTTACAAGTATAATAGTGGTATATCCACTTAGCACCACATT
65 CTTAGCACCACGTTACAAGTATAACAGTGGTATATCCACTTAGCACCACATT
58874136 TTTTTCATTC
Statistics
Matches: 103, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
132 29 0.28
133 74 0.72
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (132 bp):
TAACCGTGGCATATCCACTTAGCACCACATTAATGAATCAATATATGTAACCGTGGCATATCCAC
TTAGCACCACGTTACAAGTATAACAGTGGTATATCCACTTAGCACCACATTAATGAATCAATATA
TG
Found at i:58876873 original size:15 final size:15
Alignment explanation
Indices: 58876850--58876895 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
58876840 ACTGATAAGC
*
58876850 CCAAAATAAGGAAAT
1 CCAAGATAAGGAAAT
*
58876865 CCAAGATAAAGAAAT
1 CCAAGATAAGGAAAT
*
58876880 CCATGATAAGGAAAT
1 CCAAGATAAGGAAAT
58876895 C
1 C
58876896 TCATTTACAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.54, C:0.15, G:0.15, T:0.15
Consensus pattern (15 bp):
CCAAGATAAGGAAAT
Found at i:58880250 original size:85 final size:85
Alignment explanation
Indices: 58880145--58880351 Score: 306
Period size: 85 Copynumber: 2.4 Consensus size: 85
58880135 TTAACATGTA
* * * * **
58880145 TAACTGTGGCATGTCCACTTAGAACCACATTACATGTTTAACCGTGGTTTATTTACATAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACATTACATGTTTAACCGTGGTATATCCACATAGCACCA
*
58880210 CATTACTGAATCAATATATG
66 CATTAATGAATCAATATATG
* *
58880230 TAACCGTGGCATATCCACTTAGCACCACATTACATGTTTAACCGTGGTATATCCGCTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACATTACATGTTTAACCGTGGTATATCCACATAGCACCA
*
58880295 CGTTAATGAATCAATATATG
66 CATTAATGAATCAATATATG
* *
58880315 TAACCATGGCATATCCACTTAGCACCACGTTACATGT
1 TAACCGTGGCATATCCACTTAGCACCACATTACATGT
58880352 ATCAATATGT
Statistics
Matches: 110, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
85 110 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACATTACATGTTTAACCGTGGTATATCCACATAGCACCA
CATTAATGAATCAATATATG
Found at i:58880253 original size:47 final size:47
Alignment explanation
Indices: 58880202--58880390 Score: 189
Period size: 47 Copynumber: 4.2 Consensus size: 47
58880192 TTTATTTACA
*
58880202 TAGCACCACATTACTGAATCAATATATGTAACCGTGGCATATCCACT
1 TAGCACCACATTACTGAATCAATATATGTAACCATGGCATATCCACT
* * * *
58880249 TAGCACCACA-T--T--A-C-ATGT-T-TAACCGTGGTATATCCGCT
1 TAGCACCACATTACTGAATCAATATATGTAACCATGGCATATCCACT
* *
58880287 TAGCACCACGTTAATGAATCAATATATGTAACCATGGCATATCCACT
1 TAGCACCACATTACTGAATCAATATATGTAACCATGGCATATCCACT
* * * * * *
58880334 TAGCACCACGTTACATGTATCAATATGTGTAATCATGGTATAACCACT
1 TAGCACCACATTAC-TGAATCAATATATGTAACCATGGCATATCCACT
58880382 TAGCACCAC
1 TAGCACCAC
58880391 GTTTTTTCAT
Statistics
Matches: 118, Mismatches: 14, Indels: 19
0.78 0.09 0.13
Matches are distributed among these distances:
38 26 0.22
39 2 0.02
40 3 0.03
41 2 0.02
42 1 0.01
43 1 0.01
44 2 0.02
45 3 0.03
46 2 0.02
47 39 0.33
48 37 0.31
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.29
Consensus pattern (47 bp):
TAGCACCACATTACTGAATCAATATATGTAACCATGGCATATCCACT
Found at i:58880381 original size:48 final size:47
Alignment explanation
Indices: 58880268--58880393 Score: 180
Period size: 48 Copynumber: 2.7 Consensus size: 47
58880258 ATTACATGTT
* *
58880268 TAACCGTGGTATATCCGCTTAGCACCACGTTAATGAATCAATATATG
1 TAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * *
58880315 TAACCATGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCATGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
* *
58880363 TAATCATGGTATAACCACTTAGCACCACGTT
1 TAACCATGGTATATCCACTTAGCACCACGTT
58880394 TTTTCATTCC
Statistics
Matches: 70, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
47 29 0.41
48 41 0.59
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (47 bp):
TAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:58882762 original size:40 final size:40
Alignment explanation
Indices: 58882700--58882957 Score: 360
Period size: 40 Copynumber: 6.5 Consensus size: 40
58882690 CAGCCAAGTA
* * * * *
58882700 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCTCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
58882739 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
58882779 CCTTCGGGACTTAGCCCGGATATAGTAAGTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
58882819 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
58882859 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
58882899 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
58882939 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
58882958 TTATCATCCA
Statistics
Matches: 199, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 13 0.07
40 186 0.93
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:58891585 original size:49 final size:49
Alignment explanation
Indices: 58891512--58891699 Score: 250
Period size: 49 Copynumber: 3.8 Consensus size: 49
58891502 TAGCCGAACC
* *
58891512 TATCTGGTACGCATAGTAGACTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * *
58891561 AATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * * *
58891612 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACGTGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* *
58891661 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTGCACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
58891700 CGTGACCTCA
Statistics
Matches: 117, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 75 0.64
50 2 0.02
51 40 0.34
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:58891636 original size:100 final size:100
Alignment explanation
Indices: 58891517--58891701 Score: 334
Period size: 100 Copynumber: 1.9 Consensus size: 100
58891507 GAACCTATCT
58891517 GGTACGCATAGTAGACTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGACTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
58891582 TGCACTTAGTACTACACACGCGATCACAGTTTTCG
66 TGCACTTAGTACTACACACGCGATCACAGTTTTCG
* * *
58891617 GGTACGCATAGTAGCCTGCACTTAGTACTACACGTGCGACCAATTATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGACTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
*
58891682 TGCACTTAGTACTGCACACG
66 TGCACTTAGTACTACACACG
58891702 TGACCTCACA
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 81 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (100 bp):
GGTACGCATAGTAGACTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGCGATCACAGTTTTCG
Found at i:58893367 original size:383 final size:383
Alignment explanation
Indices: 58892660--58893427 Score: 1428
Period size: 383 Copynumber: 2.0 Consensus size: 383
58892650 CAATTATATC
*
58892660 ATAGACCTCAAAATAATCATAAAATAATTATTTCTATCTCGGATTTGTGGTCACAAAACCACTAT
1 ATAGACCTCAAAATAATCATAAAATAATTATTTCTATCTCGAATTTGTGGTCACAAAACCACTAT
* *
58892725 TCTGATTAGGCCCTAATTCGGGATATTACATACATGAACCATACACGCTTTGAAATGAAAAAATT
66 TCCGATTAGGCCCTAATTCAGGATATTACATACATGAACCATACACGCTTTGAAATGAAAAAATT
*
58892790 TATGAAATTCATGGCTAACTTGGTGAATAAAAATGTGATAGGTTGTGTATTATTATGAATTGTAC
131 TATGAAATTCATGGCTAACTTGGTGAATAAAAATGTGATAGGTTGTGTATTATTATGAATTATAC
*
58892855 CATGATATGTTAAATTGTTTGGATTGTATTTTTATGGTAAGATGAGTTTATTATTATATGAACTT
196 CATGATATGTTAAATTGTTTGGATTGTATTTTTATGGTAAGATAAGTTTATTATTATATGAACTT
*
58892920 ACTATGTTTTATAGCTTACATCGTTTATCTTTCAGTGTTTTATAGTGAAATCAAAGCTAGCTCGG
261 ACTATGTTTTATAGCTTACATCATTTATCTTTCAGTGTTTTATAGTGAAATCAAAGCTAGCTCGG
* *
58892985 ATTCGAGAATCGTCAGAGACCTCATCACACTATCAAATTATCAGTTTGGGACTTTTGA
326 ATTCGAGAATCGTCAGAGACCCCATCACACTATCAAATTATCACTTTGGGACTTTTGA
*
58893043 ATAGACCTCAAAATAATCATAAAATAATTATTTCTATCTCGAATTTGTGGTCACGAAACCACTAT
1 ATAGACCTCAAAATAATCATAAAATAATTATTTCTATCTCGAATTTGTGGTCACAAAACCACTAT
*
58893108 TCCGATTAGGCCCTAATTCAGGATATTACATACATGAACCATACATGCTTTGAAATGAAAAAATT
66 TCCGATTAGGCCCTAATTCAGGATATTACATACATGAACCATACACGCTTTGAAATGAAAAAATT
58893173 TATGAAATTCATGGCTAACTTGGTGAATAAAAATGTGATAGGTTGTGTATTATTATGAATTATAC
131 TATGAAATTCATGGCTAACTTGGTGAATAAAAATGTGATAGGTTGTGTATTATTATGAATTATAC
58893238 CATGATATGTTAAATTGTTTGGATTGTATTTTTATGGTAAGATAAGTTTATTATTATATGAACTT
196 CATGATATGTTAAATTGTTTGGATTGTATTTTTATGGTAAGATAAGTTTATTATTATATGAACTT
*
58893303 ACTATGTTTTATAGCTTACATCATTTATTTTTCAGTGTTTTATAGTGAAATCAAAGCTAGCTCGG
261 ACTATGTTTTATAGCTTACATCATTTATCTTTCAGTGTTTTATAGTGAAATCAAAGCTAGCTCGG
*
58893368 ATTCGAGAATCGTTAGAGACCCCATCACACTATCAAATTATCACTTTGGGACTTTTGA
326 ATTCGAGAATCGTCAGAGACCCCATCACACTATCAAATTATCACTTTGGGACTTTTGA
58893426 AT
1 AT
58893428 CTATGATTTT
Statistics
Matches: 373, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
383 373 1.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (383 bp):
ATAGACCTCAAAATAATCATAAAATAATTATTTCTATCTCGAATTTGTGGTCACAAAACCACTAT
TCCGATTAGGCCCTAATTCAGGATATTACATACATGAACCATACACGCTTTGAAATGAAAAAATT
TATGAAATTCATGGCTAACTTGGTGAATAAAAATGTGATAGGTTGTGTATTATTATGAATTATAC
CATGATATGTTAAATTGTTTGGATTGTATTTTTATGGTAAGATAAGTTTATTATTATATGAACTT
ACTATGTTTTATAGCTTACATCATTTATCTTTCAGTGTTTTATAGTGAAATCAAAGCTAGCTCGG
ATTCGAGAATCGTCAGAGACCCCATCACACTATCAAATTATCACTTTGGGACTTTTGA
Found at i:58899023 original size:35 final size:35
Alignment explanation
Indices: 58898984--58899053 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
58898974 CAGGGTAGGG
58898984 GATGAAGCCAAGGTAATCAAAATATCACTCCCAAA
1 GATGAAGCCAAGGTAATCAAAATATCACTCCCAAA
*
58899019 GATGAAGCCAGGGTAATCAAAATATCACTCCCAAA
1 GATGAAGCCAAGGTAATCAAAATATCACTCCCAAA
58899054 AATCCTTTCT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.44, C:0.23, G:0.16, T:0.17
Consensus pattern (35 bp):
GATGAAGCCAAGGTAATCAAAATATCACTCCCAAA
Found at i:58901104 original size:29 final size:29
Alignment explanation
Indices: 58901061--58901190 Score: 190
Period size: 29 Copynumber: 4.5 Consensus size: 29
58901051 TCATCAACCA
* *
58901061 ATGAAAAGGGATAGCTTTGGGTATTGAAT
1 ATGAAAAGGGATAGCTTTGGCTATCGAAT
* * *
58901090 ATGAAAAGTGG-TAGCTTCGACTATTGAAT
1 ATGAAAAG-GGATAGCTTTGGCTATCGAAT
58901119 ATGAAAAGGGATAGCTTTGGCTATCGAAT
1 ATGAAAAGGGATAGCTTTGGCTATCGAAT
*
58901148 ATGAAAAGGGATAGCTTTGGCTATCGATT
1 ATGAAAAGGGATAGCTTTGGCTATCGAAT
58901177 ATGAAAAGGGATAG
1 ATGAAAAGGGATAG
58901191 GGATGACCAT
Statistics
Matches: 92, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
28 2 0.02
29 88 0.96
30 2 0.02
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.28
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTTGGCTATCGAAT
Found at i:58901203 original size:58 final size:58
Alignment explanation
Indices: 58901086--58901203 Score: 139
Period size: 58 Copynumber: 2.0 Consensus size: 58
58901076 TTTGGGTATT
* ** * *
58901086 GAATATGAAAAGTGGTAGCTTCGACTATTGAATATGAAAAGGGATAGCTTTGGCTATC
1 GAATATGAAAAGTGGTAGCTTCGACTATCGAATATGAAAAGGGATAGCGATGACCATC
* * * *
58901144 GAATATGAAAAG-GGATAGCTTTGGCTATCGATTATGAAAAGGGATAGGGATGACCATC
1 GAATATGAAAAGTGG-TAGCTTCGACTATCGAATATGAAAAGGGATAGCGATGACCATC
58901202 GA
1 GA
58901204 TTAATAAAAT
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
57 2 0.04
58 48 0.96
ACGTcount: A:0.36, C:0.10, G:0.28, T:0.26
Consensus pattern (58 bp):
GAATATGAAAAGTGGTAGCTTCGACTATCGAATATGAAAAGGGATAGCGATGACCATC
Found at i:58918432 original size:46 final size:46
Alignment explanation
Indices: 58918297--58918565 Score: 235
Period size: 47 Copynumber: 5.7 Consensus size: 46
58918287 GTTATTTTTG
* * ** *
58918297 GCTAGTGCAAGACATGTCTGGGACATGCATCGGCC-ACATTATGAGA
1 GCTAGTGTAAAACATGTCTGGGACATGCATCGGCCTTGA-GATGAGA
* * * *
58918343 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGA
1 GCTAGTGTAA-AACATGTCTGGGACAT-GCATCGGCCTTGAGATGAGA
*
58918391 GCTAGTGTAAAACATGTCTGGGACATGCATCGGCCTTGAGACATAAG-
1 GCTAGTGTAAAACATGTCTGGGACATGCATCGGCCTTGAG--ATGAGA
* * *
58918438 GC-AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGATA
1 GCTAGTGTAAAACATGTCTGGGACATGCATCGGCCT-TGAGATGAGA
* * *
58918483 G-TCAGTGTAAGACTATGTCTGGGACATGGCATC-GACTTGAGATGTGA
1 GCT-AGTGTAAAAC-ATGTCTGGGACAT-GCATCGGCCTTGAGATGAGA
* *
58918530 GCCAGTGTAAGACCATGTCTGGGACATTGCATCGGC
1 GCTAGTGTAA-AACATGTCTGGGACA-TGCATCGGC
58918566 ACCTTACCCA
Statistics
Matches: 182, Mismatches: 25, Indels: 30
0.77 0.11 0.13
Matches are distributed among these distances:
44 3 0.02
45 3 0.02
46 63 0.35
47 77 0.42
48 35 0.19
49 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAAACATGTCTGGGACATGCATCGGCCTTGAGATGAGA
Found at i:58924394 original size:40 final size:39
Alignment explanation
Indices: 58924350--58924454 Score: 140
Period size: 40 Copynumber: 2.6 Consensus size: 39
58924340 ACTACTTGCT
*
58924350 CAAATGCCTTCGAGACTTAGCCCGG-ATATAGTAACTCGCA
1 CAAATGCCTTCG-GACTTAGCCCGGAAT-TAGTAACTAGCA
* *
58924390 CAAATGCATTCGGAGCTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGAATTAGTAACTAGCA
58924430 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTC-GGACTTAGCCCGG
58924455 TTATCATCCA
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
39 2 0.03
40 51 0.88
41 5 0.09
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.22
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGAATTAGTAACTAGCA
Found at i:58932228 original size:39 final size:40
Alignment explanation
Indices: 58932155--58932348 Score: 259
Period size: 39 Copynumber: 4.9 Consensus size: 40
58932145 GGATATAGCT
* * *
58932155 ACTCGCTCAAATGCCTTCGGGACTTAACCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATA
*
58932195 ACTCGCACAAATGCCTTC-GGACTTAACCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATA
*
58932234 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATA
* * * * *
58932274 ACTCACACAATTGCCTTCGGG-CTTAGCCCGG-AATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAATA
*
58932313 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
58932349 CATCCGAATT
Statistics
Matches: 137, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
38 1 0.01
39 69 0.50
40 66 0.48
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATA
Found at i:58932289 original size:79 final size:79
Alignment explanation
Indices: 58932155--58932344 Score: 256
Period size: 79 Copynumber: 2.4 Consensus size: 79
58932145 GGATATAGCT
* * * * *
58932155 ACTCGCTCAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAAATGCCTTCGGACTTA
*
58932220 ACCCGG-TTATAATA
66 ACCCGGAAT-TAATA
* *
58932234 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAATTGCCTTCGGGCTTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAAATGCCTTCGGACTTA
* * *
58932299 GCCCGGAATTAGTC
66 ACCCGGAATTAATA
*
58932313 ACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
58932345 TTATCATCCG
Statistics
Matches: 98, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
79 97 0.99
80 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (79 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAAATGCCTTCGGACTTA
ACCCGGAATTAATA
Found at i:58944928 original size:42 final size:42
Alignment explanation
Indices: 58944825--58944981 Score: 167
Period size: 43 Copynumber: 3.7 Consensus size: 42
58944815 ATATGTGTTA
* *
58944825 TCGTGTAAGACCACATCTGTGACGTTGGCATCG-ACTTATGATT
1 TCGTGTAAGACCACGTCTGGGACGTTGGCATCGTA-TT-TGATT
* *
58944868 TATGTGTAAGACCATGTCTGGGACGTTGGCATCGTATTTGATT
1 T-CGTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATT
* *
58944911 TCGTGTAAGACC-CTGTCTGCGACAG-TGGCATTGATATTTGATT
1 TCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCG-TATTTGATT
* *
58944954 ACTTGTAAGACCACGTCTGGGACGTTGG
1 TCGTGTAAGACCACGTCTGGGACGTTGG
58944982 GATTGTATGA
Statistics
Matches: 96, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
42 26 0.27
43 38 0.40
44 31 0.32
45 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (42 bp):
TCGTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATT
Found at i:58949930 original size:960 final size:960
Alignment explanation
Indices: 58948070--58949990 Score: 3441
Period size: 960 Copynumber: 2.0 Consensus size: 960
58948060 AGTGATTTAA
* * *
58948070 ATGGGTTACCAACTATAATTTCGTCAATAAAAGCTCTGAGTATTGTGAGAAAAGGTTGTGAAGCT
1 ATGGGTTACCAACTATAATTTCATCAATAAAAGCTCTGAATATTATGAGAAAAGGTTGTGAAGCT
* *
58948135 TACTTTGCCTATGTGATTGATTCAAAAGTGTTAGAAAAGAGAGTTGAATTAGTGCCTATTGTCTG
66 TACTTTGCCTATGTGATTGATTCAAAAGTGTCAGAAAAGAGAGTTGAATTAGTACCTATTGTCTG
* *
58948200 TGAATTCCCTAATGCGTTTCCTGACGAACTTTCGGGATTACCTCCGATATGAGAAGTTGAATTTG
131 TGAATTCCATAATGCGTTTCCTGACGAACTTTCGGGATTACCTCCGATACGAGAAGTTGAATTTG
58948265 GCATTAAGTTAATACCGGGAACTACTCTAATTTCGATAGCTCCGTATAGAATGGCTCCGACCGAA
196 GCATTAAGTTAATACCGGGAACTACTCTAATTTCGATAGCTCCGTATAGAATGGCTCCGACCGAA
58948330 CTAAAAGAATTAAAGTCTCAGTTGCAAGAGTTGACCGATAGAGGCTTTGCTAGACCGAGTTTTTC
261 CTAAAAGAATTAAAGTCTCAGTTGCAAGAGTTGACCGATAGAGGCTTTGCTAGACCGAGTTTTTC
*
58948395 ACCTTGGGTTGCTCCAGTTCTGTTTATGAAAAAAGAAAGATGGTACGATGAGAATGTGCATATAT
326 ACCTTAGGTTGCTCCAGTTCTGTTTATGAAAAAAGAAAGATGGTACGATGAGAATGTGCATATAT
*
58948460 TATCGTTAGTTGAACAAGGTGACTATCAAGAATAAATACCCTTTGCCCTGAATTGATGACTTTTT
391 TATCGTTAGTTGAACAAGGTGACTATCAAGAACAAATACCCTTTGCCCTGAATTGATGACTTTTT
58948525 TTTATCAATTAAAAGGAGCTACTGTATTTTCAAAGATAGATTTGAGAGTAGGCTTTATCAGTTGC
456 TTTATCAATTAAAAGGAGCTACTGTATTTTCAAAGATAGATTTGAGAGTAGGCTTTATCAGTTGC
* * * * *
58948590 GAGTGAAAGACTCAGACATTCTGAAAATTGCATTTAGAACGAGGTACGACCACTATGAATTCTTA
521 AAGTGAAAGACTCAAACATTCTGAAAATTGCATTCAAAACGAGGTACGACCACTATGAATTCCTA
58948655 GTTATGCCTTTCAAATTAACAAATGCACCTTCTATCTTTAATGATTTGATGAACATAATTTTCAG
586 GTTATGCCTTTCAAATTAACAAATGCACCTTCTATCTTTAATGATTTGATGAACATAATTTTCAG
* * * *
58948720 ACCATATTTAGATCGATTTGTTGTTGTATTAGTTGATGACATATTGATTTATTCGCGTGATGAAT
651 ACCATATTTAGATCGATTTATTATTGTATTAGTTGATGACATATAGATTTATTCGCGTGATAAAT
58948785 TCGAGCATGCCGAGAATCTAAGAATAGTACTACAAACTTTGCGTGATAAGCAATTGTATATGAAG
716 TCGAGCATGCCGAGAATCTAAGAATAGTACTACAAACTTTGCGTGATAAGCAATTGTATAT-AAG
* *
58948850 TTTAGCAAATGTGAATTCTGGTTACGAGAAGTTAGTTTTCTGGGTCATATTGTATCAGTATCAGG
780 TTTAGCAAATGTGAATTATGGTTACGAGAAGTTAGTTTTCTGGGCCATATTGTATCAGTATCAGG
58948915 TGTTCGATTGATCCGAGCAAAATTTCAGCTATTTCGGATTGAAAGCCTCCGAGAAATGTCTCTGA
845 TGTTCGATTGATCCGAGCAAAATTTCAGCTATTTCGGATTGAAAGCCTCCGAGAAATGTCTCTGA
*
58948980 AGCCTGCAGTTTTTTGGGACTTGCTGGTTATTATAGAAGGTTCGTAAAAGG
910 AGCCTGCAGTTTTTTGGGACTTGCTGGTTATTATAGAAGGTTCATAAAAGG
* *
58949031 ATGGGTTACCAACTATGATTTCATCAATGAAAGCTCTGAATATTATGAGAAAAGGTTGTGAAGCT
1 ATGGGTTACCAACTATAATTTCATCAATAAAAGCTCTGAATATTATGAGAAAAGGTTGTGAAGCT
58949096 TACTTTGCCTATGTGATTGATTCAAAAGTGTCAGAAAAGAGAGTTGAATTAGTACCTATTGTCTG
66 TACTTTGCCTATGTGATTGATTCAAAAGTGTCAGAAAAGAGAGTTGAATTAGTACCTATTGTCTG
* * *
58949161 TGAATTCCATGATGTGTTTCCTGATGAACTTTCGGGATTACCTCCGATACGAGAAGTTGAATTTG
131 TGAATTCCATAATGCGTTTCCTGACGAACTTTCGGGATTACCTCCGATACGAGAAGTTGAATTTG
* *
58949226 GCATTAAGTTAATACCGGGAACTACTCTGATTTTGATAGCTCCGTATAGAATGGCTCCGACCGAA
196 GCATTAAGTTAATACCGGGAACTACTCTAATTTCGATAGCTCCGTATAGAATGGCTCCGACCGAA
58949291 CTAAAAGAATTAAAGTCTCAGTTGCAAGAGTTGACCGATAGAGGCTTTGCTAGACCGAGTTTTTC
261 CTAAAAGAATTAAAGTCTCAGTTGCAAGAGTTGACCGATAGAGGCTTTGCTAGACCGAGTTTTTC
*
58949356 ACCTTAGGTTGCTCCAGTTCTGTTTATGAAAAAAGAAAGATGGTATGATGAGAATGTGCATATAT
326 ACCTTAGGTTGCTCCAGTTCTGTTTATGAAAAAAGAAAGATGGTACGATGAGAATGTGCATATAT
*
58949421 TATCGTTAGTTGAATAAGGTGACTATCAAGAACAAATACCCTTTGCCCTGAATTGATGA-TTTTT
391 TATCGTTAGTTGAACAAGGTGACTATCAAGAACAAATACCCTTTGCCCTGAATTGATGACTTTTT
* * * *
58949485 TTTATCAATTGAAAGGAGCTACTGTATTTTCGAATATAGATTTGAGATTAGGCTTTATCAGTTGC
456 TTTATCAATTAAAAGGAGCTACTGTATTTTCAAAGATAGATTTGAGAGTAGGCTTTATCAGTTGC
58949550 AAGTGAAAGACTCAAACATTCTGAAAATTGCATTCAAAACGAGGTACGACCACTATGAATTCCTA
521 AAGTGAAAGACTCAAACATTCTGAAAATTGCATTCAAAACGAGGTACGACCACTATGAATTCCTA
*
58949615 GTTATGCCTTTCAAATTAACAAATGCACCTTTTATCTTTAATGATTTGATGAACATAATTTTCAG
586 GTTATGCCTTTCAAATTAACAAATGCACCTTCTATCTTTAATGATTTGATGAACATAATTTTCAG
58949680 ACCATATTTAGATCGATTTATTATTGTATTAGTTGATGACATATAGATTTATTCGCGTGATAAAT
651 ACCATATTTAGATCGATTTATTATTGTATTAGTTGATGACATATAGATTTATTCGCGTGATAAAT
*
58949745 TCGAGCATGCCGAGAATCTGAGAATAGTACTACAAACTTTGCGTGATAAGCAATTGTATGCAT-A
716 TCGAGCATGCCGAGAATCTAAGAATAGTACTACAAACTTTGCGTGATAAGCAATTGTAT--ATAA
58949809 GTTTAGCAAATGTGAATTATGGTTACGAGAAGTTAGTTTTCTGGGCCATATTGTATCAGTATCAG
779 GTTTAGCAAATGTGAATTATGGTTACGAGAAGTTAGTTTTCTGGGCCATATTGTATCAGTATCAG
* * *
58949874 GTGTTTGATTGATCCGAGTAAAATTTCAGCTATTTCGGATTGGAAGCCTCCGAGAAATGTCTCTG
844 GTGTTCGATTGATCCGAGCAAAATTTCAGCTATTTCGGATTGAAAGCCTCCGAGAAATGTCTCTG
*
58949939 AAGTCTGCAGTTTTTTGGGACTTGCTGGTTATTATAGAAGGTTCATAAAAGG
909 AAGCCTGCAGTTTTTTGGGACTTGCTGGTTATTATAGAAGGTTCATAAAAGG
58949991 CTTTTCAATG
Statistics
Matches: 918, Mismatches: 40, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
960 485 0.53
961 431 0.47
962 2 0.00
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.34
Consensus pattern (960 bp):
ATGGGTTACCAACTATAATTTCATCAATAAAAGCTCTGAATATTATGAGAAAAGGTTGTGAAGCT
TACTTTGCCTATGTGATTGATTCAAAAGTGTCAGAAAAGAGAGTTGAATTAGTACCTATTGTCTG
TGAATTCCATAATGCGTTTCCTGACGAACTTTCGGGATTACCTCCGATACGAGAAGTTGAATTTG
GCATTAAGTTAATACCGGGAACTACTCTAATTTCGATAGCTCCGTATAGAATGGCTCCGACCGAA
CTAAAAGAATTAAAGTCTCAGTTGCAAGAGTTGACCGATAGAGGCTTTGCTAGACCGAGTTTTTC
ACCTTAGGTTGCTCCAGTTCTGTTTATGAAAAAAGAAAGATGGTACGATGAGAATGTGCATATAT
TATCGTTAGTTGAACAAGGTGACTATCAAGAACAAATACCCTTTGCCCTGAATTGATGACTTTTT
TTTATCAATTAAAAGGAGCTACTGTATTTTCAAAGATAGATTTGAGAGTAGGCTTTATCAGTTGC
AAGTGAAAGACTCAAACATTCTGAAAATTGCATTCAAAACGAGGTACGACCACTATGAATTCCTA
GTTATGCCTTTCAAATTAACAAATGCACCTTCTATCTTTAATGATTTGATGAACATAATTTTCAG
ACCATATTTAGATCGATTTATTATTGTATTAGTTGATGACATATAGATTTATTCGCGTGATAAAT
TCGAGCATGCCGAGAATCTAAGAATAGTACTACAAACTTTGCGTGATAAGCAATTGTATATAAGT
TTAGCAAATGTGAATTATGGTTACGAGAAGTTAGTTTTCTGGGCCATATTGTATCAGTATCAGGT
GTTCGATTGATCCGAGCAAAATTTCAGCTATTTCGGATTGAAAGCCTCCGAGAAATGTCTCTGAA
GCCTGCAGTTTTTTGGGACTTGCTGGTTATTATAGAAGGTTCATAAAAGG
Found at i:58962837 original size:49 final size:49
Alignment explanation
Indices: 58962776--58962875 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
58962766 CTCCACAGGG
58962776 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
1 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
58962825 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
1 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
58962874 TA
1 TA
58962876 CCCTCCTCAG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (49 bp):
TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
Found at i:58963621 original size:26 final size:26
Alignment explanation
Indices: 58963592--58963646 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
58963582 ACTCAAGGAG
58963592 TTCATTCATCATTCAGGAAGTTTCAC
1 TTCATTCATCATTCAGGAAGTTTCAC
58963618 TTCATTCATCATTCAGGAAGTTTCAC
1 TTCATTCATCATTCAGGAAGTTTCAC
58963644 TTC
1 TTC
58963647 TCTCCTTATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.25, C:0.24, G:0.11, T:0.40
Consensus pattern (26 bp):
TTCATTCATCATTCAGGAAGTTTCAC
Found at i:58965240 original size:42 final size:42
Alignment explanation
Indices: 58965190--58965298 Score: 121
Period size: 43 Copynumber: 2.6 Consensus size: 42
58965180 TCGATACTTC
* *
58965190 TGTCCCAGACAGGGTCTTACACGAAATCATATAT-GATGCCAA
1 TGTCCCAGACACGGTCTTACACGAAATCATA-ATCGAAGCCAA
* * * * **
58965232 TGTCCCAGACATGGTCTTATACTTAAATCTTAATCGAAGCCTG
1 TGTCCCAGACACGGTCTTACAC-GAAATCATAATCGAAGCCAA
58965275 TGTCCCAGACACGGTCTTACACGA
1 TGTCCCAGACACGGTCTTACACGA
58965299 TGTCTCAGAC
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
42 23 0.42
43 32 0.58
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (42 bp):
TGTCCCAGACACGGTCTTACACGAAATCATAATCGAAGCCAA
Found at i:58971270 original size:24 final size:24
Alignment explanation
Indices: 58971236--58971286 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
58971226 ATGTATCGGC
*
58971236 AAAAGCCGAAATGCCAAAAAGCCA
1 AAAAGCCGAAATACCAAAAAGCCA
* * *
58971260 AAAAGCTGAAATACCGAAAAGCTA
1 AAAAGCCGAAATACCAAAAAGCCA
58971284 AAA
1 AAA
58971287 GTTCGGGTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.57, C:0.20, G:0.16, T:0.08
Consensus pattern (24 bp):
AAAAGCCGAAATACCAAAAAGCCA
Found at i:58971578 original size:28 final size:29
Alignment explanation
Indices: 58971512--58971581 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 29
58971502 ATGTGACTGA
*
58971512 GCCTAACGGGCCATATAAATATGATTTGG
1 GCCTAATGGGCCATATAAATATGATTTGG
*
58971541 GCCTAATGGGCCATATGAATATGA-TTGG
1 GCCTAATGGGCCATATAAATATGATTTGG
* *
58971569 GCTTAGTGGGCCA
1 GCCTAATGGGCCA
58971582 AATATAGGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 15 0.41
29 22 0.59
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (29 bp):
GCCTAATGGGCCATATAAATATGATTTGG
Found at i:58974495 original size:50 final size:50
Alignment explanation
Indices: 58974441--58974764 Score: 290
Period size: 50 Copynumber: 6.4 Consensus size: 50
58974431 TAAGACAGTT
* *
58974441 TTAGGTCATGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG
* * * ** * *
58974491 TTAGGTCGCATGTGTAGTACTAAGTGTAGGCTACTATACGTACCCGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG
* * * * * * *
58974541 TTTTGATCACGTGTGTAGTACTAAGTGCATGCTACTATATCTATCAGATGG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG
* * * *
58974592 TAAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCGGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG
* * * ** * *
58974642 ATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCG-TTAAC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATT--G
* * * ** * *
58974693 TTCGATCACGTGTGTAGTACTAAGTGCAAGCTACTGCGTGTATCAGATCG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG
* *
58974743 ATAAGTCACGTGTGTAGTACTA
1 TTAGGTCACGTGTGTAGTACTA
58974765 CGTCACGTGT
Statistics
Matches: 216, Mismatches: 54, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
49 2 0.01
50 140 0.65
51 73 0.34
52 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG
Found at i:58974667 original size:151 final size:152
Alignment explanation
Indices: 58974443--58974764 Score: 459
Period size: 151 Copynumber: 2.1 Consensus size: 152
58974433 AGACAGTTTT
* * * * *
58974443 AGGTCATGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAG
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATTGATAGGTCGCATGTGTAG
* * ** * *
58974508 TACTAAGTGTAGGCTACTATACGTACCCGATAGTTTTGATCACGTGTGTAGTACTAAGTGCATGC
66 TACTAAGTGCAGGCTACTATACATACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAAGC
* *
58974573 TACTATATCTATCAGAT-GGTA
131 TACTACATCTATCAGATCGATA
*
58974594 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCGGATTGATAGGTCGCATGTGTAG
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATTGATAGGTCGCATGTGTAG
* *
58974659 TACTAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAAGC
66 TACTAAGTGCAGGCTACTATACATACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAAGC
* * *
58974724 TACTGCGTGTATCAGATCGATA
131 TACTACATCTATCAGATCGATA
58974746 A-GTCACGTGTGTAGTACTA
1 AGGTCACGTGTGTAGTACTA
58974765 CGTCACGTGT
Statistics
Matches: 151, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
151 147 0.97
152 4 0.03
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (152 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATTGATAGGTCGCATGTGTAG
TACTAAGTGCAGGCTACTATACATACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAAGC
TACTACATCTATCAGATCGATA
Found at i:58974771 original size:19 final size:19
Alignment explanation
Indices: 58974747--58974783 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
58974737 AGATCGATAA
58974747 GTCACGTGTGTAGTACTAC
1 GTCACGTGTGTAGTACTAC
58974766 GTCACGTGTGTAGTACTA
1 GTCACGTGTGTAGTACTA
58974784 AGTGCAGGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (19 bp):
GTCACGTGTGTAGTACTAC
Found at i:58974809 original size:69 final size:69
Alignment explanation
Indices: 58974698--58974833 Score: 200
Period size: 69 Copynumber: 2.0 Consensus size: 69
58974688 TTAACTTCGA
* * * *
58974698 TCACGTGTGTAGTACTAAGTGCAAGCTACTGCGTGTATCAGATCGATAAGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAAGCCACTACGTGTACCAGATCGATAAGTCACATGTGTAGTAC
58974763 TACG
66 TACG
* * * *
58974767 TCACGTGTGTAGTACTAAGTGCAGGCCACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAAGCCACTACGTGTACCAGATCGATAAGTCACATGTGTAGTAC
58974832 TA
66 TA
58974834 AGTGCAGGCT
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
69 59 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (69 bp):
TCACGTGTGTAGTACTAAGTGCAAGCCACTACGTGTACCAGATCGATAAGTCACATGTGTAGTAC
TACG
Found at i:58975070 original size:16 final size:16
Alignment explanation
Indices: 58975049--58975080 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
58975039 AGAATGGAGT
58975049 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
58975065 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
58975081 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:58981653 original size:50 final size:50
Alignment explanation
Indices: 58981549--58981886 Score: 338
Period size: 50 Copynumber: 6.7 Consensus size: 50
58981539 AGAACATATA
* *
58981549 TGTAGTACTATGTGCAGGCTACTATGTGTGTAAGACAG-TT-TTAGGTCACGTG
1 TGTAGTACTAAGTGCAGGCTACTA--TGTGT-A-CCAGATTGTTAGGTCACGTG
* ** *
58981601 TGTAGTACTAAGTGTAGGCTACTATGTGTAAGAGATTGTTAGGTCACATG
1 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACGTG
* * * ** * * * *
58981651 TGTAGTACTAAGTACAGGCGACCATGCATACCCGATAGTTTTGATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TTAGGTCACGTG
* * * *
58981702 TGTAGTACTAAGTACAGGCTACTATGTGTATCAGATGGTTAAGTCACGTG
1 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACGTG
* * * *
58981752 TGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGATAAGTCACGTG
1 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACGTG
** * *
58981802 TGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACGTG
* * **
58981852 TGTAGTACTCAGTGTAGGCTACTATGCATACCAGA
1 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
58981887 GAGCTTCGAT
Statistics
Matches: 238, Mismatches: 45, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
48 3 0.01
49 3 0.01
50 170 0.71
51 40 0.17
52 22 0.09
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (50 bp):
TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACGTG
Found at i:58982107 original size:16 final size:16
Alignment explanation
Indices: 58982086--58982117 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
58982076 AGAATGGAGT
58982086 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
58982102 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
58982118 TAAAATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:58988193 original size:10 final size:10
Alignment explanation
Indices: 58988178--58988202 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
58988168 ATACTAAATC
58988178 AAATGAATAG
1 AAATGAATAG
58988188 AAATGAATAG
1 AAATGAATAG
58988198 AAATG
1 AAATG
58988203 GTGAAAATGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (10 bp):
AAATGAATAG
Found at i:58989127 original size:22 final size:22
Alignment explanation
Indices: 58989099--58989146 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
58989089 TTAAAATACG
*
58989099 TTTGTCTTAGTAATAGTTTTAC
1 TTTGTCTTAGTAATAATTTTAC
*
58989121 TTTGTCTTGGTAATAATTTTAC
1 TTTGTCTTAGTAATAATTTTAC
58989143 TTTG
1 TTTG
58989147 CCTATGATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.21, C:0.08, G:0.15, T:0.56
Consensus pattern (22 bp):
TTTGTCTTAGTAATAATTTTAC
Found at i:58990835 original size:48 final size:48
Alignment explanation
Indices: 58990764--58990931 Score: 151
Period size: 48 Copynumber: 3.5 Consensus size: 48
58990754 TAAGATTTCA
* * *
58990764 TATAAAACCATGTTTGGGACATGGCCTCGGCATTGATATGAGATCCTG
1 TATAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGATCCTG
* * * *
58990812 TATAAGACCATGTCTAGGACATGGCATCAGCA-TCATTATGAGA-CCCG
1 TATAAGACCATGTCTGGGACATGGCATCGGCATTGA-TATGAGATCCTG
* * * * * * *
58990859 AATAAGACCATATCTGGGATATGGCATCGACATCGATTTGAGATCCTA
1 TATAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGATCCTG
* * * *
58990907 TGTAAGACCATATTTGGGATATGGC
1 TATAAGACCATGTCTGGGACATGGC
58990932 TTTGGCATCG
Statistics
Matches: 96, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
47 37 0.39
48 59 0.61
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (48 bp):
TATAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGATCCTG
Found at i:58999857 original size:37 final size:37
Alignment explanation
Indices: 58999807--58999878 Score: 135
Period size: 37 Copynumber: 1.9 Consensus size: 37
58999797 TCAGTAGGAG
*
58999807 TAGGCATGTTACTTTCAACATCATCCGCCACTACTCT
1 TAGGCATGTTACTTTCAACATCATCCACCACTACTCT
58999844 TAGGCATGTTACTTTCAACATCATCCACCACTACT
1 TAGGCATGTTACTTTCAACATCATCCACCACTACT
58999879 TTATTGGGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.26, C:0.32, G:0.10, T:0.32
Consensus pattern (37 bp):
TAGGCATGTTACTTTCAACATCATCCACCACTACTCT
Found at i:59004189 original size:48 final size:46
Alignment explanation
Indices: 59004091--59004448 Score: 476
Period size: 48 Copynumber: 7.6 Consensus size: 46
59004081 AGATAAATAT
* *
59004091 ATATGTGTGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
59004137 ATATGTATAT-GT---G--GTATTCGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGGTAAAGCCG-AAT-GGCTAATGTGAAATATGTATGAG
59004179 ATATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATAT--GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
59004227 ATATGTATATGCGGTAAAGCCGAATGGCTAATGTAAAATATGTATGAG
1 ATATGTATAT--GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
59004275 ATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAG
1 ATATGTATAT--GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
59004323 ATATGTATACGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATA--TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
59004371 ATATGTATACGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAG
1 ATATGTATA--TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
59004419 ATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATATGTATA--TGGTAAAGCCGAATGGCTA
59004449 GTGATTCAGC
Statistics
Matches: 288, Mismatches: 12, Indels: 22
0.89 0.04 0.07
Matches are distributed among these distances:
40 1 0.00
41 2 0.01
42 34 0.12
45 4 0.01
46 8 0.03
48 235 0.82
49 2 0.01
50 2 0.01
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (46 bp):
ATATGTATATGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:59004341 original size:144 final size:144
Alignment explanation
Indices: 59004101--59004451 Score: 552
Period size: 144 Copynumber: 2.5 Consensus size: 144
59004091 ATATGTGTGT
**
59004101 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT--ATTC----GGCT
1 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
* *
59004160 AATGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
66 AGTGTGAAATATGTATGAGATATGTATACGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
59004225 AGATATGTATATGC
131 AGATATGTATACGC
* *
59004239 GGTAAAGCCGAATGGCTAATGTAAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCT
1 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
* * *
59004304 AGTGTGAACTATGTATGAGATATGTATACGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
66 AGTGTGAAATATGTATGAGATATGTATACGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
59004369 AGATATGTATACGT
131 AGATATGTATACGC
*
59004383 GGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
1 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
59004448 AGTG
66 AGTG
59004452 ATTCAGCTAG
Statistics
Matches: 193, Mismatches: 14, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
138 49 0.25
140 2 0.01
144 142 0.74
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (144 bp):
GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
AGTGTGAAATATGTATGAGATATGTATACGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
AGATATGTATACGC
Found at i:59004451 original size:96 final size:96
Alignment explanation
Indices: 59004101--59004448 Score: 555
Period size: 96 Copynumber: 3.7 Consensus size: 96
59004091 ATATGTGTGT
**
59004101 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT--ATTC----GGCT
1 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
59004160 AATGTGAAATATGTATGAGATATGTATATGC
66 AATGTGAAATATGTATGAGATATGTATATGC
*
59004191 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCT
1 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
*
59004256 AATGTAAAATATGTATGAGATATGTATATGC
66 AATGTGAAATATGTATGAGATATGTATATGC
* * *
59004287 GGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATACGTGGTAAAGCCGAATGGCT
1 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
* * *
59004352 AGTGTGAAATATGTATGAGATATGTATACGT
66 AATGTGAAATATGTATGAGATATGTATATGC
*
59004383 GGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
1 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
59004448 A
66 A
59004449 GTGATTCAGC
Statistics
Matches: 236, Mismatches: 16, Indels: 6
0.91 0.06 0.02
Matches are distributed among these distances:
90 50 0.21
92 2 0.01
96 184 0.78
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (96 bp):
GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
AATGTGAAATATGTATGAGATATGTATATGC
Found at i:59004678 original size:37 final size:37
Alignment explanation
Indices: 59004628--59004723 Score: 147
Period size: 37 Copynumber: 2.6 Consensus size: 37
59004618 TATTCCGGGG
59004628 AAGACCCGATGACTACGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCTGGGT
* * *
59004665 AAGACCCGATGACTAAGTGTGGAGATTTTTTCTGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCTGGGT
* *
59004702 ATGACCCGATAACTACGTGTGG
1 AAGACCCGATGACTACGTGTGG
59004724 GGACTATTCA
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCTGGGT
Found at i:59008541 original size:46 final size:45
Alignment explanation
Indices: 59008452--59008758 Score: 191
Period size: 44 Copynumber: 6.6 Consensus size: 45
59008442 TATGTGTGCT
*
59008452 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATT--TTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG---CATTGAATGAGAGCC
* * *
59008498 AGTGTAAGACATATCTGGGACATGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGA-ATGAGAGCC
* * *
59008544 AGTGTAAGACATGTCTGGAACATGCATCAGCCTCTAGATATGCA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCAT-T-GA-ATG-AGAGCC
* ** * **
59008592 AGTGTAAGACTTGTCTGGGACATGGCATTAGC-TTGACAT--GTGTT
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCATTGA-ATGAGAGCC
* ** * **
59008636 AGTGTAAGACTTGTCTGGGACATGGCATTAGC-TTGACAT--GTGTT
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCATTGA-ATGAGAGCC
* * *
59008680 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAGAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCATTG--A-ATGAGAGCC
*
59008729 AGTGTAAGACCTGTCTGGGACATGGCATCG
1 AGTGTAAGACATGTCTGGGACAT-GCATCG
59008759 ACCTTCATAT
Statistics
Matches: 221, Mismatches: 27, Indels: 23
0.82 0.10 0.08
Matches are distributed among these distances:
43 4 0.02
44 73 0.33
45 2 0.01
46 68 0.31
47 5 0.02
48 29 0.13
49 40 0.18
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAATGAGAGCC
Found at i:59008639 original size:92 final size:92
Alignment explanation
Indices: 59008446--59008659 Score: 240
Period size: 92 Copynumber: 2.3 Consensus size: 92
59008436 GGGTGATATG
* * *
59008446 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTTTGAGAGCCAGTGTAAGACATA
1 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAATATGAGAGCCAGTGTAAGACATA
*
59008511 TCTGGGACATGCATCGGCATTGAGACGA
66 TCTGGGACATGCATCAGCATT-AGACGA
* * *
59008539 -GAGCTAGTGTAAGACATGTCTGGAACATGCATCAGCCTCTAGATATGCA-AGCCAGTGTAAGAC
1 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-A-ATATG-AGAGCCAGTGTAAGAC
* * *
59008602 TTGTCTGGGACATGGCATTAGC-TT-GAC-A
63 ATATCTGGGACAT-GCATCAGCATTAGACGA
* *
59008630 TGTGTTAGTGTAAGACTTGTCTGGGACATG
1 TGTGCTAGTGTAAGACATGTCTGGGACATG
59008660 GCATTAGCTT
Statistics
Matches: 102, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
91 1 0.01
92 63 0.62
93 1 0.01
94 30 0.29
95 7 0.07
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.27
Consensus pattern (92 bp):
TGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAATATGAGAGCCAGTGTAAGACATA
TCTGGGACATGCATCAGCATTAGACGA
Found at i:59008649 original size:44 final size:44
Alignment explanation
Indices: 59008592--59008707 Score: 223
Period size: 44 Copynumber: 2.6 Consensus size: 44
59008582 TATGCAAGCC
59008592 AGTGTAAGACTTGTCTGGGACATGGCATTAGCTTGACATGTGTT
1 AGTGTAAGACTTGTCTGGGACATGGCATTAGCTTGACATGTGTT
59008636 AGTGTAAGACTTGTCTGGGACATGGCATTAGCTTGACATGTGTT
1 AGTGTAAGACTTGTCTGGGACATGGCATTAGCTTGACATGTGTT
*
59008680 AGTGTAAGACCTGTCTGGGACATGGCAT
1 AGTGTAAGACTTGTCTGGGACATGGCAT
59008708 CGACATCGAT
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
44 71 1.00
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.32
Consensus pattern (44 bp):
AGTGTAAGACTTGTCTGGGACATGGCATTAGCTTGACATGTGTT
Found at i:59008745 original size:49 final size:47
Alignment explanation
Indices: 59008452--59008853 Score: 208
Period size: 49 Copynumber: 8.6 Consensus size: 47
59008442 TATGTGTGCT
* * ** **
59008452 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCAC-ATTTTGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTCGATAGTG-GAGCC
* * * * * *
59008498 AGTGTAAGACATATCTGGGACAT-GCATCGGCATT-GAGACG-AGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-TTCGATA-GTGGAGCC
* * * * *
59008544 AGTGTAAGACATGTCTGGAACAT-GCATCAGCCTCTAGATA-TGCAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATC-GACT-TCGATAGTG-GAGCC
* * * * **
59008592 AGTGTAAGACTTGTCTGGGACATGGCAT-TAGCTT-GACA-T-GTGTT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CTTCGATAGTGGAGCC
* * * * **
59008636 AGTGTAAGACTTGTCTGGGACATGGCAT-TAGCTT-GACA-T-GTGTT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CTTCGATAGTGGAGCC
*
59008680 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTCGATAG-TG-GAGCC
* *
59008729 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTTC-ATATTTGGAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CTTCGATA-GTGG-AGCC
* * * *
59008778 AGTGTAAGACCTATCTAGGACATGGCATCGACTTAGAT-GTGTGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTCGATAGTG-GAGCC
* *
59008825 AGTGTAAGACCATGTTTGGAACATGGCAT
1 AGTGTAAGACC-TGTCTGGGACATGGCAT
59008854 TGGCATCGTA
Statistics
Matches: 290, Mismatches: 44, Indels: 42
0.77 0.12 0.11
Matches are distributed among these distances:
44 74 0.26
45 4 0.01
46 65 0.22
47 21 0.07
48 47 0.16
49 76 0.26
50 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACTTCGATAGTGGAGCC
Found at i:59008756 original size:93 final size:94
Alignment explanation
Indices: 59008636--59008854 Score: 237
Period size: 98 Copynumber: 2.3 Consensus size: 94
59008626 GACATGTGTT
* * * * * * *
59008636 AGTGTAAGACTTGTCTGGGACATGGCATTAGCTTGACA-T-G-TGTTAGTGTAAGACCTGTCTGG
1 AGTGTAAGACCTGTCTGGGACATGGCATTACCTTCACATTGGAAGTCAGTGTAAGACCTATCTAG
*
59008698 GACATGGCATCGACATCGATAGATGAGAGCC
66 GACATGGCATCGACATAGAT-G-TGAGAGCC
* *
59008729 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTTCATATTTGGAAGTCAGTGTAAGACCTATCT
1 AGTGTAAGACCTGTCTGGGACATGGCAT-TACCTTCACA-TTGGAAGTCAGTGTAAGACCTATCT
* * *
59008794 AGGACATGGCATCGACTTAGATGTGTGAGCT
64 AGGACATGGCATCGACATAGATGTGAGAGCC
* *
59008825 AGTGTAAGACCATGTTTGGAACATGGCATT
1 AGTGTAAGACC-TGTCTGGGACATGGCATT
59008855 GGCATCGTAC
Statistics
Matches: 104, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
93 27 0.26
94 6 0.06
96 18 0.17
97 17 0.16
98 36 0.35
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (94 bp):
AGTGTAAGACCTGTCTGGGACATGGCATTACCTTCACATTGGAAGTCAGTGTAAGACCTATCTAG
GACATGGCATCGACATAGATGTGAGAGCC
Found at i:59013131 original size:40 final size:40
Alignment explanation
Indices: 59013094--59013275 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 40
59013084 GCTACTCGTT
*
59013094 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
59013134 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
59013174 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
59013213 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
59013254 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
59013276 AGACATCATT
Statistics
Matches: 120, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.27
40 74 0.62
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:59013205 original size:79 final size:81
Alignment explanation
Indices: 59013094--59013275 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 81
59013084 GCTACTCGTT
* * *
59013094 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCG-GATCTTAACCCG
* *
59013158 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
59013174 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCACACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCACACAAATGCCTTCGGATCTTAACCCG
* *
59013237 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
59013254 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
59013276 AGACATCATT
Statistics
Matches: 88, Mismatches: 10, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 55 0.62
80 30 0.34
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:59033583 original size:40 final size:40
Alignment explanation
Indices: 59033538--59033762 Score: 319
Period size: 40 Copynumber: 5.6 Consensus size: 40
59033528 ACTACTTGCT
*
59033538 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
59033578 CAAATGCCTTCGAGTCTTAGCCCCGATATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
59033618 CAAATGCCTTCGGGACTTAGCCCGGGTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
59033658 CCAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
59033698 CAAATGCCTTC-GGAGCTTAGCCCGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATA-TAGTAACTCGCA
*
59033738 CAAATGCCTTTGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
59033763 TTATCATCCA
Statistics
Matches: 164, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.02
40 157 0.96
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:59033753 original size:120 final size:120
Alignment explanation
Indices: 59033540--59033762 Score: 351
Period size: 120 Copynumber: 1.9 Consensus size: 120
59033530 TACTTGCTCA
*
59033540 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGAGTCTTAGCCCCGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGTCTTAGCCCCGAT
* *
59033605 ATAGTAACTCGTACAAATGCCTTCGGGACTTAGCCCGGGTATAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGTAACTCGCACC
* *
59033660 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATGCCTTCGGAG-CTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GAGTCTTAGCCCCGA
* *
59033724 -ATTAGTCACTAGCACAAATGCCTTTGGGACTTAGCCCGG
65 TA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
59033763 TTATCATCCA
Statistics
Matches: 94, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
119 1 0.01
120 90 0.96
121 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGTCTTAGCCCCGAT
ATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGTAACTCGCACC
Found at i:59038080 original size:28 final size:27
Alignment explanation
Indices: 59038017--59038168 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
59038007 ATATTAAGTC
* * *
59038017 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
59038044 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
59038072 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
59038099 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
* *
59038127 CGCACACTTAGTGCTAGATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
59038154 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
59038169 GCACAATTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:59038101 original size:55 final size:55
Alignment explanation
Indices: 59038017--59038168 Score: 250
Period size: 55 Copynumber: 2.8 Consensus size: 55
59038007 ATATTAAGTC
* * *
59038017 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
59038072 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
59038127 CGCACACTTAGTGCTAGATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
59038169 GCACAATTTA
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 91 1.00
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:59044916 original size:47 final size:47
Alignment explanation
Indices: 59044858--59045479 Score: 1017
Period size: 47 Copynumber: 13.4 Consensus size: 47
59044848 CAGCCAAGAC
*
59044858 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
59044905 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
59044952 AGTG--TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
59044997 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
59045044 AGTGTATATATATG-T---G-AT-ATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
59045085 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
59045132 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
59045179 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
59045226 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
59045273 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
59045320 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
59045367 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
59045414 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
59045461 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
59045480 TCCCGAAGGG
Statistics
Matches: 545, Mismatches: 22, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
41 35 0.06
42 2 0.00
43 1 0.00
45 45 0.08
46 2 0.00
47 460 0.84
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:59045654 original size:37 final size:37
Alignment explanation
Indices: 59045598--59045676 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
59045588 CCGAGCTCTA
* *
59045598 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
59045635 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
59045672 AAGAC
1 AAGAC
59045677 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:59050638 original size:42 final size:42
Alignment explanation
Indices: 59050522--59050671 Score: 126
Period size: 42 Copynumber: 3.5 Consensus size: 42
59050512 ATCTGAGATA
* *
59050522 TCGTGTAAGACCGTGTCT-GGACACAGGCCTCG-ATTGAGATT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCGTATTGA-ATT
* ** *
59050563 TACGTATAAGACCATGTCTGGGACATTGACATCGTATCT-AATT
1 T-CGTGTAAGACCATGTCTGGGACACAGGCATCGTAT-TGAATT
* * *
59050606 TCGTGTAAGACCCTGTCTGGGATAGAGGCATCGATATTGAATT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCG-TATTGAATT
* * * *
59050649 ACATGTAAGACCACGTCCGGGAC
1 TCGTGTAAGACCATGTCTGGGAC
59050672 CTCAGAGTTG
Statistics
Matches: 85, Mismatches: 18, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
41 1 0.01
42 42 0.49
43 38 0.45
44 3 0.04
45 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACACAGGCATCGTATTGAATT
Found at i:59050658 original size:85 final size:85
Alignment explanation
Indices: 59050502--59050671 Score: 195
Period size: 85 Copynumber: 2.0 Consensus size: 85
59050492 CTAAAGGAAT
* * *
59050502 ATTGACATCTATCTGAGATATCGTGTAAGACCGTGTCTGGACACAGGCCTCGATTGAGATTTACG
1 ATTGACATCTATCTGAGATATCGTGTAAGACCCTGTCTGGACACAGGCATCGATTGAGATTTACA
* *
59050567 TATAAGACCATGTCTGGGAC
66 TATAAGACCACGTCCGGGAC
* * *
59050587 ATTGACATCGTATCT-A-ATTTCGTGTAAGACCCTGTCTGGGATAGAGGCATCGATATTGA-A-T
1 ATTGACATC-TATCTGAGATATCGTGTAAGACCCTGTCT-GGACACAGGCATCG--ATTGAGATT
*
59050648 TACATGTAAGACCACGTCCGGGAC
62 TACATATAAGACCACGTCCGGGAC
59050672 CTCAGAGTTG
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
84 19 0.26
85 42 0.58
86 6 0.08
87 5 0.07
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (85 bp):
ATTGACATCTATCTGAGATATCGTGTAAGACCCTGTCTGGACACAGGCATCGATTGAGATTTACA
TATAAGACCACGTCCGGGAC
Found at i:59062027 original size:23 final size:23
Alignment explanation
Indices: 59061996--59062041 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
59061986 TAGAAAAATA
* * *
59061996 ATTAAATATTATTTTTCATGTTT
1 ATTAAATATGAATTTGCATGTTT
*
59062019 ATTATATATGAATTTGCATGTTT
1 ATTAAATATGAATTTGCATGTTT
59062042 GAAAATTTCG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.04, G:0.09, T:0.57
Consensus pattern (23 bp):
ATTAAATATGAATTTGCATGTTT
Found at i:59063882 original size:17 final size:17
Alignment explanation
Indices: 59063838--59063874 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
59063828 ACTAAGCTAA
59063838 GTTAGCTTACTATGTGT
1 GTTAGCTTACTATGTGT
59063855 GTTAGCTTACTATGTGT
1 GTTAGCTTACTATGTGT
59063872 GTT
1 GTT
59063875 TTGTTACTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.16, C:0.11, G:0.24, T:0.49
Consensus pattern (17 bp):
GTTAGCTTACTATGTGT
Found at i:59068213 original size:49 final size:49
Alignment explanation
Indices: 59068157--59068859 Score: 1133
Period size: 49 Copynumber: 14.6 Consensus size: 49
59068147 TATTTGAATA
*
59068157 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
59068206 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
59068255 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
59068304 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
59068351 AATGTGGAACTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
59068400 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
59068449 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
59068498 AATGTGAAAGTG--TATATATGTGATAAGGACGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
59068545 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
59068594 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
59068643 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
59068692 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
59068739 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
59068786 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
59068833 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
59068860 TCCTGAAGGG
Statistics
Matches: 620, Mismatches: 28, Indels: 14
0.94 0.04 0.02
Matches are distributed among these distances:
47 227 0.37
48 1 0.00
49 392 0.63
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:59068345 original size:145 final size:146
Alignment explanation
Indices: 59068157--59068859 Score: 1138
Period size: 145 Copynumber: 4.9 Consensus size: 146
59068147 TATTTGAATA
*
59068157 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
59068222 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
65 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
59068287 TAATGGCCGATGTGATG
130 GAATGGCCAATGTGATG
* * * *
59068304 AATGTGAAAGTG-TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGGAACTGTATAT
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
59068368 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCG
66 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCG
59068433 AATGGCCAATGTGATG
131 AATGGCCAATGTGATG
59068449 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
59068512 TATATGTGATAAGGACGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
65 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
59068577 GAATGGCCAATGTGATG
130 GAATGGCCAATGTGATG
*
59068594 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
59068659 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
65 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* * *
59068722 TAATAGCCGATGTGATG
130 GAATGGCCAATGTGATG
59068739 AATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * *
59068801 ATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
66 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
59068860 TCCTGAAGGG
Statistics
Matches: 525, Mismatches: 25, Indels: 18
0.92 0.04 0.03
Matches are distributed among these distances:
141 50 0.10
142 1 0.00
143 48 0.09
145 327 0.62
147 99 0.19
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (146 bp):
AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCG
AATGGCCAATGTGATG
Found at i:59068477 original size:194 final size:194
Alignment explanation
Indices: 59068157--59068859 Score: 1229
Period size: 194 Copynumber: 3.7 Consensus size: 194
59068147 TATTTGAATA
*
59068157 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
59068222 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
66 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
59068287 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
131 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
59068351 AATGTGGAACTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
59068416 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
66 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
59068481 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGACGAATGGCCAATGTGATG
131 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
59068545 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
59068610 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
66 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* * *
59068675 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
131 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
59068739 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* * * * *
59068800 TATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
66 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
59068860 TCCTGAAGGG
Statistics
Matches: 490, Mismatches: 19, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
188 10 0.02
189 1 0.00
190 45 0.09
192 45 0.09
194 389 0.79
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (194 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:59079185 original size:30 final size:30
Alignment explanation
Indices: 59079149--59079209 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
59079139 TTCTTAACTC
59079149 AAACTTTGGCAAAATTACAATTTTACCCCT
1 AAACTTTGGCAAAATTACAATTTTACCCCT
* * * * *
59079179 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTACCCCT
59079209 A
1 A
59079210 GGTCGGGAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTACCCCT
Found at i:59081656 original size:12 final size:12
Alignment explanation
Indices: 59081639--59081663 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
59081629 ATGGTTTAGT
59081639 TGATTATCGTAC
1 TGATTATCGTAC
59081651 TGATTATCGTAC
1 TGATTATCGTAC
59081663 T
1 T
59081664 AACATAGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.44
Consensus pattern (12 bp):
TGATTATCGTAC
Found at i:59087215 original size:26 final size:27
Alignment explanation
Indices: 59087029--59087514 Score: 402
Period size: 27 Copynumber: 18.2 Consensus size: 27
59087019 ACCCTACAGA
* * *
59087029 GGTATGTCGGTCATTTTACAATAT-AAG
1 GGTATTTCGGTAATTTTACAA-ATCGAG
** * **
59087056 GGTATTTTAGTAATTTTACACTATAAAG
1 GGTATTTCGGTAATTTTACA-AATCGAG
* * * * *
59087084 GTTATTTTGATAATTTTACAAATTGGG
1 GGTATTTCGGTAATTTTACAAATCGAG
* *
59087111 GGTGTTTCGGTAATTTTAGAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
59087138 GGTATTTCGGTAATTTTACAAATC-AGG
1 GGTATTTCGGTAATTTTACAAATCGA-G
* *
59087165 GGTATTTCGATAATTTTACAAATCGAA
1 GGTATTTCGGTAATTTTACAAATCGAG
* *
59087192 GATATTTCGGTAA-TTTATAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* **
59087218 GGTATTTCAGTAA-TTT-CATAATTAAG
1 GGTATTTCGGTAATTTTACA-AATCGAG
** *
59087244 GGTATTTCAATAATTTTACAAATC-AA
1 GGTATTTCGGTAATTTTACAAATCGAG
*
59087270 GGTATTTCGGTAA-TTTACAAATTGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * * * *
59087296 GGTGTTTCGATAATTTCATAAATCGGG
1 GGTATTTCGGTAATTTTACAAATCGAG
**
59087323 GGTATTTTTGT-ATTTTCACAAATCGAG
1 GGTATTTCGGTAATTTT-ACAAATCGAG
** *
59087350 GGTATTTTAGTAATTTTACAAATTGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
** *
59087377 GGTATTTTAGTAATTTCAC-AATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
** *
59087403 GGTATTTTAGTAGTTTT-CAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * *
59087429 GGTATTTCAGTAACTTCAC-AATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* *
59087455 GGTATTTCGATAATTTTTCAAATC-AGG
1 GGTATTTCGGTAATTTTACAAATCGA-G
*
59087482 GGTATTTCGATAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
59087509 GGTATT
1 GGTATT
59087515 CTAGTAATTT
Statistics
Matches: 375, Mismatches: 68, Indels: 32
0.79 0.14 0.07
Matches are distributed among these distances:
25 11 0.03
26 134 0.36
27 201 0.54
28 29 0.08
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTACAAATCGAG
Found at i:59087367 original size:185 final size:186
Alignment explanation
Indices: 59087052--59087514 Score: 510
Period size: 185 Copynumber: 2.5 Consensus size: 186
59087042 TTTTACAATA
* * * * *
59087052 TAAGGGTATTTTAGTAATTTTACACTATAAAGGTTATTTTGATAATTTTACAAATTGGGGGTGTT
1 TAAGGGTATTTCAGTAATTTTACA-AATCAAGG-TATTTCGATAATTTTACAAATTGAGGGTGTT
* * *
59087117 TCGGTAATTTTAGAAATCGAGGGTATTTCGGTAATTTTACAAATCAGGGGTATTTCGATAATTTT
64 TCGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCAGGGGTATTTAGATAATTTT
*
59087182 ACAAATCGAAGATATTTCGGTAATTT-ATAAATCGAGGGTATTTCAGTA-ATTTCATAAT
129 ACAAATCGAAGATATTTCAGTAATTTCA-AAATCGAGGGTATTTCAGTAGATTTCA-AAT
* *
59087240 TAAGGGTATTTCAATAATTTTACAAATCAAGGTATTTCGGTAA-TTTACAAATTGAGGGTGTTTC
1 TAAGGGTATTTCAGTAATTTTACAAATCAAGGTATTTCGATAATTTTACAAATTGAGGGTGTTTC
* * * **
59087304 GATAATTTCATAAATCGGGGGTATTTTTGT-ATTTTCACAAATC-GAGGGTATTTTAG-TAATTT
66 GATAATTTTACAAATCGAGGGTATTTCGGTAATTTT-ACAAATCAG-GGGTA-TTTAGATAATTT
* * * * * * *
59087366 TACAAATTGAGGGTATTTTAGTAATTTCACAATCGAGGGTATTTTAGTAGTTTTCAAAT
128 TACAAATCGAAGATATTTCAGTAATTTCAAAATCGAGGGTATTTCAGTAGATTTCAAAT
** * * * * * *
59087425 CGAGGGTATTTCAGTAACTTCAC-AATCGAGGGTATTTCGATAATTTTTCAAA-TCAGGGGTATT
1 TAAGGGTATTTCAGTAATTTTACAAATC-AAGGTATTTCGATAATTTTACAAATTGA-GGGTGTT
59087488 TCGATAATTTTACAAATCGAGGGTATT
64 TCGATAATTTTACAAATCGAGGGTATT
59087515 CTAGTAATTT
Statistics
Matches: 232, Mismatches: 35, Indels: 18
0.81 0.12 0.06
Matches are distributed among these distances:
184 10 0.04
185 138 0.59
186 56 0.24
187 6 0.03
188 22 0.09
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (186 bp):
TAAGGGTATTTCAGTAATTTTACAAATCAAGGTATTTCGATAATTTTACAAATTGAGGGTGTTTC
GATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCAGGGGTATTTAGATAATTTTAC
AAATCGAAGATATTTCAGTAATTTCAAAATCGAGGGTATTTCAGTAGATTTCAAAT
Found at i:59087463 original size:159 final size:158
Alignment explanation
Indices: 59087041--59087524 Score: 476
Period size: 159 Copynumber: 3.0 Consensus size: 158
59087031 TATGTCGGTC
* * * * * **
59087041 ATTTTACAATAT-AAGGGTATTTTAGTAATTTTACACTATAAAGGTTATTTTGATAATTTTACAA
1 ATTTTACAA-ATCGAGGGTATTTCAGTAA-TTT-CACAATCAAGGGTATTTCAATAATTTTACAA
*** * * * * * *
59087105 ATTGGGGGTGTTTCGGTAATTTTAGAAATCGAGGGTATTTCGGTAATTTTACAAATCAGGGGTAT
63 A-TCAAGGTATTTCAGTAA-TTCACAAATCGAGGGTATTTCGATAA-TTTATAAATCAGGGGTAT
* * **
59087170 TTCGATAATTTTACAAATCGAAGATATTTCGGTA
125 TTCGATAATTTTACAAATCGAGGGTATTTTAGTA
* * *
59087204 A-TTTATAAATCGAGGGTATTTCAGTAATTTCATAATTAAGGGTATTTCAATAATTTTACAAATC
1 ATTTTACAAATCGAGGGTATTTCAGTAATTTCACAATCAAGGGTATTTCAATAATTTTACAAATC
* * * * * *
59087268 AAGGTATTTCGGTAATTTACAAATTGAGGGTGTTTCGATAATTTCATAAATCGGGGGTATTTTTG
66 AAGGTATTTCAGTAATTCACAAATCGAGGGTATTTCGATAATTT-ATAAATCAGGGGTA-TTTCG
59087333 -T-ATTTTCACAAATCGAGGGTATTTTAGTA
129 ATAATTTT-ACAAATCGAGGGTATTTTAGTA
* * * * * *
59087362 ATTTTACAAATTGAGGGTATTTTAGTAATTTCACAATCGAGGGTATTTTAGTAGTTTT-CAAATC
1 ATTTTACAAATCGAGGGTATTTCAGTAATTTCACAATCAAGGGTATTTCAATAATTTTACAAATC
* *
59087426 GAGGGTATTTCAGTAACTTCAC-AATCGAGGGTATTTCGATAATTTTTCAAATCAGGGGTATTTC
66 -AAGGTATTTCAGTAA-TTCACAAATCGAGGGTATTTCGATAATTTAT-AAATCAGGGGTATTTC
*
59087490 GATAATTTTACAAATCGAGGGTATTCTAGTA
128 GATAATTTTACAAATCGAGGGTATTTTAGTA
59087521 ATTT
1 ATTT
59087525 CTCTTTATTA
Statistics
Matches: 269, Mismatches: 42, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
157 8 0.03
158 65 0.24
159 135 0.50
160 35 0.13
161 5 0.02
162 20 0.07
163 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (158 bp):
ATTTTACAAATCGAGGGTATTTCAGTAATTTCACAATCAAGGGTATTTCAATAATTTTACAAATC
AAGGTATTTCAGTAATTCACAAATCGAGGGTATTTCGATAATTTATAAATCAGGGGTATTTCGAT
AATTTTACAAATCGAGGGTATTTTAGTA
Found at i:59087877 original size:28 final size:28
Alignment explanation
Indices: 59087840--59087959 Score: 177
Period size: 28 Copynumber: 4.3 Consensus size: 28
59087830 TGGCACCTTT
* *
59087840 AGGCCCAATCTCGTTCACATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
*
59087868 AAGCCCAATCACATTCACATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
* * *
59087896 AGGCCCAATCACCTTCATATGGTCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
*
59087924 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
59087952 AGGCCCAA
1 AGGCCCAA
59087960 CTACTTCCCA
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 83 1.00
ACGTcount: A:0.28, C:0.38, G:0.15, T:0.20
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:59095268 original size:27 final size:27
Alignment explanation
Indices: 59095229--59095406 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
59095219 TTATTGAGCC
* * *
59095229 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
59095256 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
*
59095283 CGCACACTTAGTGCCACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
** * *
59095311 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
59095338 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
59095365 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAGTC-AACT
*
59095392 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
59095407 GTACAATTTA
Statistics
Matches: 128, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 102 0.80
28 26 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:59095368 original size:82 final size:81
Alignment explanation
Indices: 59095250--59095405 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
59095240 TGCTATATAA
* *
59095250 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCCACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
59095315 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
59095332 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
*
59095396 CCCTTAGTGC
65 CACTTAGTGC
59095406 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.77
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:59099584 original size:27 final size:27
Alignment explanation
Indices: 59099561--59099695 Score: 157
Period size: 27 Copynumber: 5.0 Consensus size: 27
59099551 CCAAATTATT
* *
59099561 GAAATACCCTCAACTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* *
59099588 -AAAGTACCCCCGATTTATAAAATTACC
1 GAAA-TACCCTCGATTTGTAAAATTACC
* * *
59099615 CAAATATCCTCGATTTGTAAAATTACA
1 GAAATACCCTCGATTTGTAAAATTACC
* *
59099642 GAAATACCCTC-AGTTTGCAAAATTACT
1 GAAATACCCTCGA-TTTGTAAAATTACC
59099669 GAAATACCCTCGATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
59099696 CAATTATCGT
Statistics
Matches: 90, Mismatches: 14, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
26 4 0.04
27 82 0.91
28 4 0.04
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.29
Consensus pattern (27 bp):
GAAATACCCTCGATTTGTAAAATTACC
Found at i:59099779 original size:54 final size:54
Alignment explanation
Indices: 59099697--59099863 Score: 235
Period size: 54 Copynumber: 3.1 Consensus size: 54
59099687 AAAATTACCC
* * *
59099697 AATTATCGTTTTACCCTCGATTTATAGAATTGCTATTTTACCCTCGATTTACAG
1 AATTATCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTAAAA
*
59099751 AATTATCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTAAAA
1 AATTATCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTAAAA
* ** * * * *
59099805 AATTACCGACTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATGTAAAA
1 AATTATCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTAAAA
59099859 AATTA
1 AATTA
59099864 CTGAAATACC
Statistics
Matches: 101, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 101 1.00
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.40
Consensus pattern (54 bp):
AATTATCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTAAAA
Found at i:59099862 original size:27 final size:27
Alignment explanation
Indices: 59099705--59099864 Score: 169
Period size: 27 Copynumber: 5.9 Consensus size: 27
59099695 CCAATTATCG
* * *
59099705 TTTTACCCTCGATTTATAGAATTGCTA
1 TTTTACCCTCGATTTAAAGAATTACCA
* * *
59099732 TTTTACCCTCGATTTACAGAATTATCG
1 TTTTACCCTCGATTTAAAGAATTACCA
* *
59099759 TTTTACCCTCGATTTATAGAATTACTA
1 TTTTACCCTCGATTTAAAGAATTACCA
* *
59099786 TTTTACCCTTGATTTAAAAAATTACCGA
1 TTTTACCCTCGATTTAAAGAATTACC-A
* *
59099814 -CTTACCCTCGATTTACAGAATTACCA
1 TTTTACCCTCGATTTAAAGAATTACCA
* * *
59099840 TTTTACCCTCAATGTAAAAAATTAC
1 TTTTACCCTCGATTTAAAGAATTAC
59099865 TGAAATACCC
Statistics
Matches: 109, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
26 1 0.01
27 107 0.98
28 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.39
Consensus pattern (27 bp):
TTTTACCCTCGATTTAAAGAATTACCA
Found at i:59099863 original size:81 final size:81
Alignment explanation
Indices: 59099734--59099906 Score: 213
Period size: 81 Copynumber: 2.1 Consensus size: 81
59099724 AATTGCTATT
* * * * * * **
59099734 TTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAGAATTACT-ATTTTACCCTTGA
1 TTACCCTCGATTTACAGAATTACCATTTTACCCTCAATGTAAAAAATTACTGA-AATACCCTTGA
* *
59099798 TTTAAAAAATTACCGAC
65 TTTAAAAAATTACCAAA
*
59099815 TTACCCTCGATTTACAGAATTACCATTTTACCCTCAATGTAAAAAATTACTGAAATACCCTTGGT
1 TTACCCTCGATTTACAGAATTACCATTTTACCCTCAATGTAAAAAATTACTGAAATACCCTTGAT
*
59099880 TTACAAAATTACCAAA
66 TTAAAAAATTACCAAA
*
59099896 ATACCCTCGAT
1 TTACCCTCGAT
59099907 CAATAAAATT
Statistics
Matches: 78, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 77 0.99
82 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.35
Consensus pattern (81 bp):
TTACCCTCGATTTACAGAATTACCATTTTACCCTCAATGTAAAAAATTACTGAAATACCCTTGAT
TTAAAAAATTACCAAA
Found at i:59099864 original size:54 final size:54
Alignment explanation
Indices: 59099707--59099893 Score: 203
Period size: 54 Copynumber: 3.5 Consensus size: 54
59099697 AATTATCGTT
* * * * * * **
59099707 TTACCCTCGATTTATAGAATTGCTATTTTACCCTCGATTTACAGAATTATCGTT
1 TTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAAAAAATTACCGAA
* * * *
59099761 TTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTAAAAAATTACCGAC
1 TTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAAAAAATTACCGAA
* * *
59099815 TTACCCTCGATTTACAGAATTACCATTTTACCCTCAATGTAAAAAATTACTGAA
1 TTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAAAAAATTACCGAA
* * * *
59099869 ATACCCTTGGTTTACAAAATTACCA
1 TTACCCTCGATTTACAGAATTACCA
59099894 AAATACCCTC
Statistics
Matches: 115, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 115 1.00
ACGTcount: A:0.33, C:0.21, G:0.09, T:0.37
Consensus pattern (54 bp):
TTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAAAAAATTACCGAA
Found at i:59099901 original size:54 final size:53
Alignment explanation
Indices: 59099799--59099955 Score: 143
Period size: 54 Copynumber: 2.9 Consensus size: 53
59099789 TACCCTTGAT
* ** * * * ***
59099799 TTAAAAAATTACCGACTTACCCTCGATTTACAGAATTACCATTTTACCCTCAA
1 TTAAAAAATTACAGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCAA
* *
59099852 TGTAAAAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA
1 T-TAAAAAATTACAGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCAA
* * * * **
59099906 TCAATAAAATTAAAAAAATACCATTGGTTTGTAAAATTACCAAAATACCC
1 TTAA-AAAATTACAGAAATACCCTTGGTTTACAAAATTACCAAAATACCC
59099956 CTGCTTTGTG
Statistics
Matches: 85, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
53 3 0.04
54 82 0.96
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (53 bp):
TTAAAAAATTACAGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCAA
Found at i:59099964 original size:27 final size:27
Alignment explanation
Indices: 59099857--59099958 Score: 80
Period size: 27 Copynumber: 3.8 Consensus size: 27
59099847 CTCAATGTAA
** * *
59099857 AAAATTACTGAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGGTTTAT
* **
59099884 AAAATTACCAAAATA-CCCTCGATCAAT
1 AAAATTACCAAAATACCCCT-GGTTTAT
** ** *
59099911 AAAATTAAAAAAATACCATTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTAT
59099938 AAAATTACCAAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
59099959 CTTTGTGTAA
Statistics
Matches: 54, Mismatches: 19, Indels: 4
0.70 0.25 0.05
Matches are distributed among these distances:
26 3 0.06
27 49 0.91
28 2 0.04
ACGTcount: A:0.45, C:0.20, G:0.08, T:0.27
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTAT
Found at i:59099997 original size:27 final size:27
Alignment explanation
Indices: 59099967--59100162 Score: 257
Period size: 27 Copynumber: 7.3 Consensus size: 27
59099957 TGCTTTGTGT
* * *
59099967 AATTATCGAAATACCCTTGTAGGTTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
59099994 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
59100021 AATAACCGAAACACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
59100048 AATTACCGAAACACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
59100075 AATGACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
59100102 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** * *
59100129 AATTACCGAGATACCTTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
59100156 AATTACC
1 AATTACC
59100163 ATTTTGCCCC
Statistics
Matches: 149, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 149 1.00
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:59100602 original size:31 final size:31
Alignment explanation
Indices: 59100564--59100665 Score: 159
Period size: 31 Copynumber: 3.3 Consensus size: 31
59100554 TTGCATTCAC
*
59100564 ATTCTGATTTTGATTCTGTTACTTGATACCG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
*
59100595 ATTCTGATTTTGATTCTGCTACCTGATACCG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
* *
59100626 ATTCTAATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
*
59100657 ATTTTGATT
1 ATTCTGATT
59100666 CTGTCACCTA
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 64 1.00
ACGTcount: A:0.21, C:0.17, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACCG
Found at i:59100608 original size:6 final size:6
Alignment explanation
Indices: 59100564--59100707 Score: 62
Period size: 6 Copynumber: 23.3 Consensus size: 6
59100554 TTGCATTCAC
* * * *
59100564 ATTCTG ATTTTG ATTCTG -TTACTTG ATACCG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * * * *
59100613 CTACCTG ATACCG ATTCTA ATTTTG ATTCTG -TTACCTG ATACTG ATTTTG
1 AT-TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* *
59100663 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
59100708 AATGTTTCTT
Statistics
Matches: 99, Mismatches: 27, Indels: 24
0.66 0.18 0.16
Matches are distributed among these distances:
5 6 0.06
6 77 0.78
7 13 0.13
8 3 0.03
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:59100669 original size:25 final size:25
Alignment explanation
Indices: 59100632--59100693 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
59100622 ACCGATTCTA
* *
59100632 ATTTTGATTCTGTTACCTGATACTG
1 ATTTTGATTCTGTCACCTAATACTG
*
59100657 ATTTTGATTCTGTCACCTAATTCTG
1 ATTTTGATTCTGTCACCTAATACTG
*
59100682 ATTCTGATTCTG
1 ATTTTGATTCTG
59100694 ATTCTAGTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (25 bp):
ATTTTGATTCTGTCACCTAATACTG
Found at i:59102718 original size:27 final size:27
Alignment explanation
Indices: 59102687--59102828 Score: 153
Period size: 27 Copynumber: 5.3 Consensus size: 27
59102677 TTAGTTTACC
* *
59102687 AAATTACTGAAATACCCTCAACTTGTA
1 AAATTACTCAAATACCCTCAATTTGTA
* *
59102714 AAATTAC-CAAAGTACCCCCAATTTATA
1 AAATTACTCAAA-TACCCTCAATTTGTA
* * *
59102741 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTCAAATACCCTCAATTTGTA
* *
59102768 AAATTA-TAGAAATACCCTCAATTTGCA
1 AAATTACT-CAAATACCCTCAATTTGTA
* *
59102795 AAATTACTTAAATACCCTCGATTTGTA
1 AAATTACTCAAATACCCTCAATTTGTA
59102822 AAATTAC
1 AAATTAC
59102829 CCAATTATTA
Statistics
Matches: 95, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
26 3 0.03
27 87 0.92
28 5 0.05
ACGTcount: A:0.42, C:0.21, G:0.06, T:0.31
Consensus pattern (27 bp):
AAATTACTCAAATACCCTCAATTTGTA
Found at i:59102916 original size:54 final size:54
Alignment explanation
Indices: 59102831--59102983 Score: 243
Period size: 54 Copynumber: 2.8 Consensus size: 54
59102821 AAAATTACCC
* *
59102831 AATTATTATTTTACCCTCGATTTATATAATTACTATTTTACCCTCGATTTACAG
1 AATTATCATTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAG
59102885 AATTATCATTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAG
1 AATTATCATTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAG
* * * * *
59102939 AATTACCGTCTTACCCTCGATTTACAGAATTACCATTTTACCCTC
1 AATTATCATTTTACCCTCGATTTATAGAATTACTATTTTACCCTC
59102984 AATGTAAAAA
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 92 1.00
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.42
Consensus pattern (54 bp):
AATTATCATTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAG
Found at i:59102966 original size:81 final size:81
Alignment explanation
Indices: 59102831--59102983 Score: 243
Period size: 81 Copynumber: 1.9 Consensus size: 81
59102821 AAAATTACCC
* * * * * *
59102831 AATTATTATTTTACCCTCGATTTATATAATTACTATTTTACCCTCGATTTACAGAATTATCATTT
1 AATTACTATTTTACCCTCGATTTACAGAATTACCATCTTACCCTCGATTTACAGAATTACCATTT
59102896 TACCCTCGATTTATAG
66 TACCCTCGATTTATAG
*
59102912 AATTACTATTTTACCCTCGATTTACAGAATTACCGTCTTACCCTCGATTTACAGAATTACCATTT
1 AATTACTATTTTACCCTCGATTTACAGAATTACCATCTTACCCTCGATTTACAGAATTACCATTT
59102977 TACCCTC
66 TACCCTC
59102984 AATGTAAAAA
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 65 1.00
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.42
Consensus pattern (81 bp):
AATTACTATTTTACCCTCGATTTACAGAATTACCATCTTACCCTCGATTTACAGAATTACCATTT
TACCCTCGATTTATAG
Found at i:59102998 original size:27 final size:27
Alignment explanation
Indices: 59102838--59102983 Score: 220
Period size: 27 Copynumber: 5.4 Consensus size: 27
59102828 CCCAATTATT
* * *
59102838 ATTTTACCCTCGATTTATATAATTACT
1 ATTTTACCCTCGATTTACAGAATTACC
*
59102865 ATTTTACCCTCGATTTACAGAATTATC
1 ATTTTACCCTCGATTTACAGAATTACC
* *
59102892 ATTTTACCCTCGATTTATAGAATTACT
1 ATTTTACCCTCGATTTACAGAATTACC
59102919 ATTTTACCCTCGATTTACAGAATTACC
1 ATTTTACCCTCGATTTACAGAATTACC
* *
59102946 GTCTTACCCTCGATTTACAGAATTACC
1 ATTTTACCCTCGATTTACAGAATTACC
59102973 ATTTTACCCTC
1 ATTTTACCCTC
59102984 AATGTAAAAA
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 106 1.00
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41
Consensus pattern (27 bp):
ATTTTACCCTCGATTTACAGAATTACC
Found at i:59103008 original size:54 final size:54
Alignment explanation
Indices: 59102841--59103027 Score: 196
Period size: 54 Copynumber: 3.5 Consensus size: 54
59102831 AATTATTATT
* * * * *
59102841 TTACCCTCGATTTATATAATTACTATTTTACCCTCGATTTACAGAATTA-TCATT
1 TTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACTGA-A
* * * **
59102895 TTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTC
1 TTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACTGAA
* * * *
59102949 TTACCCTCGATTTACAGAATTACCATTTTACCCTCAATGTAAAAAATTACTGAA
1 TTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACTGAA
* * * *
59103003 ATACCCTTGGTTTACAAAATTACCA
1 TTACCCTCGATTTACAGAATTACCA
59103028 AAATACCCTC
Statistics
Matches: 114, Mismatches: 18, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
54 114 1.00
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.38
Consensus pattern (54 bp):
TTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACTGAA
Found at i:59103008 original size:81 final size:81
Alignment explanation
Indices: 59102842--59103027 Score: 221
Period size: 81 Copynumber: 2.3 Consensus size: 81
59102832 ATTATTATTT
* * * * * * *
59102842 TACCCTCGATTTATATAATTACTATTTTACCCTCGATTTACAGAATTATCATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCATCTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATG
* * **
59102907 TATAGAATTACTATTT
66 TAAAAAATTACTATAA
* *
59102923 TACCCTCGATTTACAGAATTACCGTCTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATG
1 TACCCTCGATTTACAAAATTACCATCTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATG
59102988 TAAAAAATTACTGA-AA
66 TAAAAAATTACT-ATAA
* *
59103004 TACCCTTGGTTTACAAAATTACCA
1 TACCCTCGATTTACAAAATTACCA
59103028 AAATACCCTC
Statistics
Matches: 88, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
81 87 0.99
82 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCATCTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATG
TAAAAAATTACTATAA
Found at i:59103035 original size:54 final size:54
Alignment explanation
Indices: 59102950--59103089 Score: 156
Period size: 54 Copynumber: 2.6 Consensus size: 54
59102940 ATTACCGTCT
* * * *** * **
59102950 TACCCTCGATTTACAGAATTACCATTTTACCCTCAATGTAA-AAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTCAAT-CAATAAAATTACCAAAA
59103004 TACCCTTGGTTTACAAAATTACCAAAATACCCTCAATCAATAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTCAATCAATAAAATTACCAAAA
* **
59103058 TACCATTGGTTTGTAAAATTACCAAAATACCC
1 TACCCTTGGTTTACAAAATTACCAAAATACCC
59103090 CTGCTTTGTG
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
53 2 0.03
54 71 0.97
ACGTcount: A:0.41, C:0.23, G:0.06, T:0.29
Consensus pattern (54 bp):
TACCCTTGGTTTACAAAATTACCAAAATACCCTCAATCAATAAAATTACCAAAA
Found at i:59103097 original size:27 final size:27
Alignment explanation
Indices: 59103044--59103115 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
59103034 CCTCAATCAA
** *
59103044 TAAAATTACCAAAATACCATTGGTTTG
1 TAAAATTACCAAAATACCCCTGCTTTG
59103071 TAAAATTACCAAAATACCCCTGCTTTG
1 TAAAATTACCAAAATACCCCTGCTTTG
** *
59103098 TGTAA-TACCGAAATACCC
1 TAAAATTACCAAAATACCC
59103116 TTGTAGGTTA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
26 12 0.31
27 27 0.69
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTGCTTTG
Found at i:59103137 original size:27 final size:27
Alignment explanation
Indices: 59103103--59103241 Score: 179
Period size: 27 Copynumber: 5.1 Consensus size: 27
59103093 CTTTGTGTAA
*
59103103 TACCGAAATACCCTTGTAGGTTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAT
*
59103130 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAT
* ** *
59103157 GACTAAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAT
* *
59103184 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAT
* * *
59103211 TACCGAGATACCCTTGTGGGGTAAAAT
1 TACCGAAATACCCTTGTAGGGTAGAAT
59103238 TACC
1 TACC
59103242 ATTTTGCCCT
Statistics
Matches: 96, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (27 bp):
TACCGAAATACCCTTGTAGGGTAGAAT
Found at i:59103139 original size:53 final size:53
Alignment explanation
Indices: 59103074--59103241 Score: 169
Period size: 54 Copynumber: 3.1 Consensus size: 53
59103064 TGGTTTGTAA
* * * * *
59103074 AATTACCAAAATACCCCTGCTTTGTGT-AAT-ACCGAAATACCCTTGTAGGTTAG
1 AATTACCGAAATACCCCTG--TAGGGTAAATGACCAAAATACCCTTGTAGGGTAG
*
59103127 AATTACCGAAATACCCCTGTAGGGTAGAATGACTAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTA-AATGACCAAAATACCCTTGTAGGGTAG
* * * * * * *
59103181 AAATACTGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTA-AATGACCAAAATACCCTTGTAGGGTAG
59103235 AATTACC
1 AATTACC
59103242 ATTTTGCCCT
Statistics
Matches: 96, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
51 4 0.04
53 21 0.22
54 71 0.74
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (53 bp):
AATTACCGAAATACCCCTGTAGGGTAAATGACCAAAATACCCTTGTAGGGTAG
Found at i:59103681 original size:31 final size:31
Alignment explanation
Indices: 59103643--59103744 Score: 177
Period size: 31 Copynumber: 3.3 Consensus size: 31
59103633 TTGCATTCAC
59103643 ATTCTGATTTTGATTCTGTTACCTGATACCG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
*
59103674 ATTCTGATTTTGATTCTGTTACATGATACCG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
* *
59103705 ATTCTGATTTTGATTTTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
59103736 ATTCTGATT
1 ATTCTGATT
59103745 CTGTCACCTA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 67 1.00
ACGTcount: A:0.21, C:0.16, G:0.16, T:0.48
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACCG
Found at i:59103687 original size:6 final size:6
Alignment explanation
Indices: 59103643--59103777 Score: 71
Period size: 6 Copynumber: 21.8 Consensus size: 6
59103633 TTGCATTCAC
* * * *
59103643 ATTCTG ATTTTG ATTCTG -TTACCTG ATACCG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
59103692 -TTACATG ATACCG ATTCTG ATTTTG ATTTTG -TTACCTG ATACTG ATTCTG
1 ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* *
59103742 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCT
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCT
59103778 AGTTTTGATA
Statistics
Matches: 97, Mismatches: 20, Indels: 24
0.69 0.14 0.17
Matches are distributed among these distances:
5 7 0.07
6 76 0.78
7 10 0.10
8 4 0.04
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:59103761 original size:25 final size:25
Alignment explanation
Indices: 59103705--59103772 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
59103695 CATGATACCG
* * * *
59103705 ATTCTGATTTTGATTTTGTTACCTG
1 ATTCTGATTCTGATTCTGTCACCTA
*
59103730 ATACTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
59103755 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
59103773 ATTCTAGTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.49
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Done.