Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 184 of 333
Found at i:60399761 original size:6 final size:6
Alignment explanation
Indices: 60399674--60399822 Score: 167
Period size: 6 Copynumber: 24.2 Consensus size: 6
60399664 TGTGTGTATG
60399674 TATGTA TA--TA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
60399720 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TGTATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA --TATGTA
* * * * ** *
60399770 TGTATGTA TGTATA TAAGTACA TATGTA TGTACA TATGTA TATATA TATGTA
1 --TATGTA TATGTA TATGT--A TATGTA TATGTA TATGTA TATGTA TATGTA
60399822 T
1 T
60399823 GTAAGTACAT
Statistics
Matches: 123, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
4 4 0.03
6 100 0.81
8 19 0.15
ACGTcount: A:0.34, C:0.01, G:0.16, T:0.48
Consensus pattern (6 bp):
TATGTA
Found at i:60403538 original size:9 final size:9
Alignment explanation
Indices: 60403524--60403566 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
60403514 TAATAAGTTA
60403524 ATGAAATAT
1 ATGAAATAT
60403533 ATGAAATAT
1 ATGAAATAT
*
60403542 ATGAAAAAT
1 ATGAAATAT
*
60403551 ATGAAAAAT
1 ATGAAATAT
60403560 ATGAAAT
1 ATGAAAT
60403567 TGGGACATAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.60, C:0.00, G:0.12, T:0.28
Consensus pattern (9 bp):
ATGAAATAT
Found at i:60403740 original size:13 final size:14
Alignment explanation
Indices: 60403714--60403746 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
60403704 ATAAAATATA
60403714 AATTTATATTTAAT
1 AATTTATATTTAAT
60403728 AATTTAT-TTTAAT
1 AATTTATATTTAAT
60403741 ATATTT
1 A-ATTT
60403747 CATTAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
AATTTATATTTAAT
Found at i:60408734 original size:28 final size:28
Alignment explanation
Indices: 60408694--60408847 Score: 256
Period size: 28 Copynumber: 5.5 Consensus size: 28
60408684 TAAATTGTAC
*
60408694 AGCACTAAGTGTGCAAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
60408722 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
60408750 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
60408778 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
60408806 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
* *
60408833 AGCATTGAGTGTGCG
1 AGCACTAAGTGTGCG
60408848 GACTTAATAT
Statistics
Matches: 122, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 23 0.19
28 99 0.81
ACGTcount: A:0.27, C:0.11, G:0.28, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:60408760 original size:56 final size:56
Alignment explanation
Indices: 60408669--60408847 Score: 261
Period size: 56 Copynumber: 3.2 Consensus size: 56
60408659 GAGATTGTCG
* * * * *
60408669 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCAAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
60408726 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
60408782 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
* *
60408837 TTGAGTGTGCG
1 CTAAGTGTGCG
60408848 GACTTAATAT
Statistics
Matches: 112, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
55 22 0.20
56 75 0.67
57 15 0.13
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.35
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:60416952 original size:28 final size:28
Alignment explanation
Indices: 60416912--60417065 Score: 256
Period size: 28 Copynumber: 5.5 Consensus size: 28
60416902 TAAATTGTAC
60416912 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
60416940 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
60416968 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
* *
60416996 AGCAATAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
60417024 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
* *
60417051 AGCATTGAGTGTGCG
1 AGCACTAAGTGTGCG
60417066 GACTTAATAT
Statistics
Matches: 121, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
27 23 0.19
28 98 0.81
ACGTcount: A:0.27, C:0.10, G:0.29, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:60416978 original size:56 final size:56
Alignment explanation
Indices: 60416888--60417065 Score: 259
Period size: 56 Copynumber: 3.2 Consensus size: 56
60416878 AGATTGGCGC
* * * * *
60416888 TAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCAC
1 TAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCAA
*
60416945 TAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCAA
1 TAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCAA
* *
60417001 TAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCAT
1 TAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCAA
*
60417056 TGAGTGTGCG
1 TAAGTGTGCG
60417066 GACTTAATAT
Statistics
Matches: 111, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
55 22 0.20
56 75 0.68
57 14 0.13
ACGTcount: A:0.26, C:0.10, G:0.29, T:0.35
Consensus pattern (56 bp):
TAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCAA
Found at i:60418663 original size:27 final size:27
Alignment explanation
Indices: 60418633--60418715 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 27
60418623 CTAGTGGCCA
60418633 ATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
* ***
60418660 ATGTGAT-AAGGTCG-AA-TG--GCCA-
1 ATGTGATGAATGT-GAAAGTGTATATAT
60418682 ATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
60418709 ATGTGAT
1 ATGTGAT
60418716 AAGGCCGAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 14
0.65 0.13 0.22
Matches are distributed among these distances:
22 8 0.20
23 7 0.17
24 2 0.05
25 2 0.05
26 7 0.17
27 15 0.37
ACGTcount: A:0.35, C:0.04, G:0.28, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTATATAT
Found at i:60418680 original size:49 final size:49
Alignment explanation
Indices: 60418607--60419052 Score: 694
Period size: 49 Copynumber: 9.3 Consensus size: 49
60418597 GGGGTGTTAC
* *
60418607 ATATATGTGATAAGGCCTAGTGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
*
60418656 ATATATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
* *
60418705 ATATATGTGATAAGGCCGAATGACCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
60418752 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
*
60418801 ATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
60418850 ATATATGT-ATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
* *
60418898 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
* * *
60418945 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
* * * *
60418992 ATATATGTGACAAGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
60419041 A-A-ATGTGATAAG
1 ATATATGTGATAAG
60419053 TCCCGAAGGG
Statistics
Matches: 371, Mismatches: 21, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
47 140 0.38
48 48 0.13
49 183 0.49
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (49 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
Found at i:60418782 original size:96 final size:96
Alignment explanation
Indices: 60418607--60419052 Score: 698
Period size: 96 Copynumber: 4.6 Consensus size: 96
60418597 GGGGTGTTAC
* * *
60418607 ATATATGTGATAAGGCCTAGTGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGT
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
60418672 CGAATGGCCAATGTGATGAATGTGAAAGTGTAT
64 CGAATGGCCAATGTGATGAATGTGAAAGTGTAT
* *
60418705 ATATATGTGATAAGGCCGAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
60418770 AATGGCCAATGTGATGAATGTGAAAGTGTAT
66 AATGGCCAATGTGATGAATGTGAAAGTGTAT
* *
60418801 ATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTATATATATGTATAAGGCC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTG-ATAAGGCC
60418866 GAATGGCCAATGTGATGAATGTGAAAGTGTAT
65 GAATGGCCAATGTGATGAATGTGAAAGTGTAT
* * *
60418898 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
* *
60418963 AATAGCCGATGTGATGAATGTGAAAGTG--T
66 AATGGCCAATGTGATGAATGTGAAAGTGTAT
* * * * *
60418992 ATATATGTGACAAGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
60419053 TCCCGAAGGG
Statistics
Matches: 326, Mismatches: 21, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
94 55 0.17
96 137 0.42
97 92 0.28
98 42 0.13
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
AATGGCCAATGTGATGAATGTGAAAGTGTAT
Found at i:60423400 original size:42 final size:43
Alignment explanation
Indices: 60423343--60423464 Score: 158
Period size: 44 Copynumber: 2.8 Consensus size: 43
60423333 TCAAAGATCA
* *
60423343 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAGATA-CT-
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAGA-AGCTG
* * * *
60423385 ATGCCGATGTCCCAGACATGGTCTTACACATAAAACAGAAGTTG
1 ATGCCAATGTCCCAGACATGGTCTTACAC-GAAATCAGAAGCTG
60423429 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCA
60423465 CATAACGAAA
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
42 27 0.40
43 13 0.19
44 28 0.41
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAGAAGCTG
Found at i:60430886 original size:43 final size:42
Alignment explanation
Indices: 60430839--60430997 Score: 128
Period size: 42 Copynumber: 3.7 Consensus size: 42
60430829 AACATATACA
* *
60430839 ATGCCAACGTCCCAGACGTGGTCTTACATGTAACCAAACATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACAAA-ATCG
*
60430882 ATGCC-ACTGTCCCAGACAG-GGTCTTACACG-AAATC-AGATACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAAA-CAAAAT-CG
* * * * * *
60430924 ATACCGACGTCCCAGACATGGTCTTGCACGTAAAACAGAAGTTG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGT-AAACA-AAATCG
* *
60430968 ATGCCAACGTCTCAGATGTGGTCTTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
60430998 AAATCACATA
Statistics
Matches: 91, Mismatches: 15, Indels: 19
0.73 0.12 0.15
Matches are distributed among these distances:
41 2 0.02
42 30 0.33
43 28 0.31
44 29 0.32
45 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACAAAATCG
Found at i:60437377 original size:40 final size:40
Alignment explanation
Indices: 60437340--60437549 Score: 230
Period size: 40 Copynumber: 5.3 Consensus size: 40
60437330 GGACTAAGAT
* * *
60437340 CCGAAGGCATTTATACGAGATACTAATTACGGGCTAAG-C
1 CCGAAGGCATTTATACGAGTTACTAAATCCGGGCTAAGTC
* * * *
60437379 CCGAAGGCA-TTAGTGCGAGTTACCAAATCCGAGTTAAGTC
1 CCGAAGGCATTTA-TACGAGTTACTAAATCCGGGCTAAGTC
* *
60437419 CCGAAGGCATTTGTACGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTATACGAGTTACTAAATCCGGGCTAAGTC
* * * *
60437459 CCGAAGGCATTTGTGCGAGTTACTTAATCCGGGTTAAGTC
1 CCGAAGGCATTTATACGAGTTACTAAATCCGGGCTAAGTC
* * *
60437499 CCGAAGGCATTTGTGCGAG-TACTATAA-CCGGGCTATGTC
1 CCGAAGGCATTTATACGAGTTACTA-AATCCGGGCTAAGTC
60437538 CCGAAGGCATTT
1 CCGAAGGCATTT
60437550 GAACGAGAAG
Statistics
Matches: 151, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
38 3 0.02
39 53 0.35
40 93 0.62
41 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTATACGAGTTACTAAATCCGGGCTAAGTC
Found at i:60437488 original size:80 final size:79
Alignment explanation
Indices: 60437287--60437550 Score: 295
Period size: 79 Copynumber: 3.3 Consensus size: 79
60437277 TTGAATGATG
* * * * * *
60437287 TCCGGGCTATGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCTG-GACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAATCCGAG-TTAAG-TCCCGAAGGCA
* *
60437349 TTTATACGAGATACTAAT
63 TTTGTACGAG-TACTAAA
* *
60437367 TACGGGCTAAG-CCCGAAGGCATTAGTGCGAGTTACCAAATCCGAGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATCCGAGTTAAGTCCCGAAGGCATTT
60437431 GTACGAGTTACTAAA
66 GTACGAG-TACTAAA
* ** *
60437446 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTTAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATCCGAGTTAAGTCCCGAAGGCATTT
*
60437511 GTGCGAGTACTATAA
66 GTACGAGTACTA-AA
*
60437526 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
60437551 AACGAGAAGC
Statistics
Matches: 159, Mismatches: 20, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
78 1 0.01
79 85 0.53
80 73 0.46
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATCCGAGTTAAGTCCCGAAGGCATTT
GTACGAGTACTAAA
Found at i:60437539 original size:119 final size:119
Alignment explanation
Indices: 60437287--60437556 Score: 289
Period size: 119 Copynumber: 2.3 Consensus size: 119
60437277 TTGAATGATG
* * * *
60437287 TCCGGGCTATGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCTGGACTAAGATCCGAAGGCATT
1 TCCGGGCTATGTCCCGAAGGCATTTGTAC-GAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
60437351 TATACGAGATACTAATTACGGGCTAAGCCCGAAGGCATTAGTGCGAGTTACCAAA
65 TATACGAGATACTAATTACGGGCTAAGCCCGAAGGCATTAGTGCGAGTTACCAAA
* * * * * **
60437406 TCCGAGTTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTATGTCCCGAAGGCATTTGTACGAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATT
* * * * * * *
60437470 TGTGCGAGTTACTTAA-TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAA
65 TATACGAGATAC-TAATTACGGGCTAAG-CCCGAAGGCATTAGTGCGAGTTACCA-AA
*
60437526 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TCCGGGCTATGTCCCGAAGGCATTTGTACGAG
60437557 AAGCTATATC
Statistics
Matches: 124, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
118 1 0.01
119 93 0.75
120 30 0.24
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (119 bp):
TCCGGGCTATGTCCCGAAGGCATTTGTACGAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
ATACGAGATACTAATTACGGGCTAAGCCCGAAGGCATTAGTGCGAGTTACCAAA
Found at i:60437568 original size:119 final size:118
Alignment explanation
Indices: 60437340--60437583 Score: 280
Period size: 119 Copynumber: 2.1 Consensus size: 118
60437330 GGACTAAGAT
60437340 CCGAAGGCATTTATACGAGATACTAATTACGGGCTAAGCCCGAAGGCATTAGTGCGAGTTACCAA
1 CCGAAGGCATTTATACGAGATACTAATTACGGGCTAAGCCCGAAGGCATTAGTGCGAGTTACCAA
* * * *
60437405 ATCCGAGTTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCCGGGTTAAGTC
66 ATCCGAGCTAAGTCCCGAAGGCATTTGAACGAGTAACTAAATCC-GGTTAAATC
* * * * * * *
60437459 CCGAAGGCATTTGTGCGAGTTACTTAA-TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG-TACT
1 CCGAAGGCATTTATACGAGATAC-TAATTACGGGCTAAG-CCCGAAGGCATTAGTGCGAGTTACC
* * * *
60437522 ATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-AAGCTATATCCGGTTAAATT
64 A-AATCCGAGCTAAGTCCCGAAGGCATTTGAACGAGTAA-CTAAATCCGGTTAAATC
60437577 CCGAAGG
1 CCGAAGG
60437584 TACGTGATTT
Statistics
Matches: 106, Mismatches: 15, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
118 15 0.14
119 67 0.63
120 24 0.23
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (118 bp):
CCGAAGGCATTTATACGAGATACTAATTACGGGCTAAGCCCGAAGGCATTAGTGCGAGTTACCAA
ATCCGAGCTAAGTCCCGAAGGCATTTGAACGAGTAACTAAATCCGGTTAAATC
Found at i:60450811 original size:27 final size:27
Alignment explanation
Indices: 60450780--60450834 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
60450770 TGATTTCTTC
*
60450780 AGTAGAAATATATTCATGAGCATACTT
1 AGTAGAAACATATTCATGAGCATACTT
*
60450807 AGTAGAAACATATTCCTGAGCATACTT
1 AGTAGAAACATATTCATGAGCATACTT
60450834 A
1 A
60450835 CTTAGTCTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.31
Consensus pattern (27 bp):
AGTAGAAACATATTCATGAGCATACTT
Found at i:60453928 original size:21 final size:20
Alignment explanation
Indices: 60453900--60453938 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
60453890 CAAAACTTGT
60453900 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
60453920 ATAACCTATCATCAAACAT
1 ATAA-CTATCATCAAACAT
60453939 CAAAACACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.28
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:60454557 original size:4 final size:4
Alignment explanation
Indices: 60454548--60454607 Score: 111
Period size: 4 Copynumber: 15.0 Consensus size: 4
60454538 GCCTGTTACA
60454548 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
60454596 GAAT GTAT GTAT
1 GTAT GTAT GTAT
60454608 ATGTACGTAG
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 54 1.00
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (4 bp):
GTAT
Found at i:60457467 original size:20 final size:20
Alignment explanation
Indices: 60457421--60457472 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 20
60457411 AAAAAAACAT
*
60457421 TTAAAATGATTTTAACATGA
1 TTAAAATAATTTTAACATGA
* * * * *
60457441 TTGAAATCATTTTGACTTGG
1 TTAAAATAATTTTAACATGA
60457461 TTAAAATAATTT
1 TTAAAATAATTT
60457473 GCACTTGATT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (20 bp):
TTAAAATAATTTTAACATGA
Found at i:60459365 original size:47 final size:48
Alignment explanation
Indices: 60459306--60459618 Score: 263
Period size: 47 Copynumber: 6.6 Consensus size: 48
60459296 TGTGCTAGTT
60459306 TAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGAAAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAAAGCCAGTG
** * *
60459352 TAAGACCATGTCTGGGACATGGCATCGG-CATCAAGATGTAAGCCAATG
1 TAAGACCATGTCTGGGACATGGCATCGGCCA-CATTATGAAAGCCAGTG
* * * * *
60459400 TAAGA-CATGGCTGGGACAT-GCATCGGCTACGA-GATG--TGTCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCAC-ATTATGAAAGCCAGTG
* * * * * * *
60459444 TAAGACCATGTCTGGGCCATGGCATCAGCAAGGATATGTGAGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCA-CAT-TATGAAAGCCAGTG
* * * * *
60459494 TAAGACCATGTCTGGGACATGGCATCGTCCTCGATTTTGATAGTCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCAC-ATTATGAAAGCCAGTG
*
60459543 TAAGACCATGTCTGGGACATGGCATC-G--AC-TTGATGGATGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCACATT-AT-GA-AAGCCAGTG
*
60459590 TAAGACCATGTTTGGGACATGGCATCGGC
1 TAAGACCATGTCTGGGACATGGCATCGGC
60459619 ATTATACCCT
Statistics
Matches: 214, Mismatches: 35, Indels: 33
0.76 0.12 0.12
Matches are distributed among these distances:
44 12 0.06
45 13 0.06
46 29 0.14
47 63 0.29
48 28 0.13
49 36 0.17
50 33 0.15
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAAAGCCAGTG
Found at i:60459496 original size:94 final size:94
Alignment explanation
Indices: 60459299--60459568 Score: 305
Period size: 94 Copynumber: 2.8 Consensus size: 94
60459289 TTATTTGTGT
* * * *
60459299 GCTAGTTTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAAAGCCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGATTATG-ATGTCAGTGTAAGACCATGT
* *
60459363 CTGGGACATGGCATCGGCATCAAGATGTAA
65 CTGGGACATGGCATCAGCAACAAGATGTAA
* * * *
60459393 GCCAATGTAAGACATGGCTGGGACATGCATCGGCTACGA-GATG-TGTCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGATTATGATGTCAGTGTAAGACCATGTC
* ** *
60459456 TGGGCCATGGCATCAGCAAGGATATGTGAGA
66 TGGGACATGGCATCAGCAACAAGATGT-A-A
* *
60459487 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGTCCT-CGATTTTGATAGTCAGTGTAAGACCA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCG-GCTACGATTATGAT-GTCAGTGTAAGACCA
60459551 TGTCTGGGACATGGCATC
62 TGTCTGGGACATGGCATC
60459569 GACTTGATGG
Statistics
Matches: 146, Mismatches: 21, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
92 39 0.27
93 1 0.01
94 46 0.32
95 14 0.10
96 9 0.06
97 4 0.03
98 1 0.01
99 32 0.22
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGATTATGATGTCAGTGTAAGACCATGTC
TGGGACATGGCATCAGCAACAAGATGTAA
Found at i:60462500 original size:20 final size:19
Alignment explanation
Indices: 60462471--60462524 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
60462461 ATCCCTAGTG
* **
60462471 GTATCGATATTTTTTCACTA
1 GTATCAATATTTTTT-AAAA
*
60462491 GTATCAATATATTTATAAAA
1 GTATCAATAT-TTTTTAAAA
60462511 GTATCAATATTTTT
1 GTATCAATATTTTT
60462525 AAGTTGGTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 3 0.11
20 21 0.75
21 4 0.14
ACGTcount: A:0.35, C:0.09, G:0.07, T:0.48
Consensus pattern (19 bp):
GTATCAATATTTTTTAAAA
Found at i:60462551 original size:25 final size:25
Alignment explanation
Indices: 60462517--60462567 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
60462507 AAAAGTATCA
60462517 ATATTTTTAAGTTGGTATCGATACC
1 ATATTTTTAAGTTGGTATCGATACC
*
60462542 ATATTTTTAAGTTGGTGTCGATACC
1 ATATTTTTAAGTTGGTATCGATACC
60462567 A
1 A
60462568 AACTATCATC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.43
Consensus pattern (25 bp):
ATATTTTTAAGTTGGTATCGATACC
Found at i:60467976 original size:49 final size:49
Alignment explanation
Indices: 60467909--60468041 Score: 164
Period size: 49 Copynumber: 2.7 Consensus size: 49
60467899 CCCATCAAGT
*
60467909 CGATGCCATGTCCAAGACATGGTCTTACACTGACTTTCA-AAATC-GAGGC
1 CGATGCCATGTCC-AGACATGGTCTTACACTGACTCTCACAAATCTG-GGC
* *
60467958 CGATGCCATGTCCTAGACATGGTCTTACACT-AGCTCTCACATATCTGTGC
1 CGATGCCATGTCC-AGACATGGTCTTACACTGA-CTCTCACAAATCTGGGC
*
60468008 TGATGCCATGTCACAGACATGGTCTTACACTGAC
1 CGATGCCATGTC-CAGACATGGTCTTACACTGAC
60468042 ACATCTCGTA
Statistics
Matches: 74, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
48 1 0.01
49 35 0.47
50 35 0.47
51 3 0.04
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCAGACATGGTCTTACACTGACTCTCACAAATCTGGGC
Found at i:60468056 original size:96 final size:94
Alignment explanation
Indices: 60467863--60468082 Score: 238
Period size: 96 Copynumber: 2.3 Consensus size: 94
60467853 GTATAATACT
*
60467863 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACCCATCAAGTCGATGCCATGTCCAAGACA
1 GATGCCATGTCCC-AACATGGTCTTACACTGGCTCACACATCAAGTCGATGCCATGTCCAAGACA
*
60467928 TGGTCTTACACTGACTTTCAAAATCGAGGCC
65 TGGTCTTACACTGAC-TACAAAATCGAGGCC
* * * *
60467959 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCACAT-ATCTGTGCTGATGCCATGT-CAC
1 GATGCCATGTCCCA-ACATGGTCTTACACTGGCTCACACATCA--AGT-C-GATGCCATGTCCA-
**
60468022 AGACATGGTCTTACACTGAC-AC-ATCTCGTA-GCC
60 AGACATGGTCTTACACTGACTACAAAATCG-AGGCC
60468055 GATG-CATGTCCCAACAT-GTCTTACACTG
1 GATGCCATGTCCCAACATGGTCTTACACTG
60468083 TCTTACATCT
Statistics
Matches: 107, Mismatches: 10, Indels: 17
0.80 0.07 0.13
Matches are distributed among these distances:
93 10 0.09
94 4 0.04
95 10 0.09
96 46 0.43
97 4 0.04
98 3 0.03
99 30 0.28
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (94 bp):
GATGCCATGTCCCAACATGGTCTTACACTGGCTCACACATCAAGTCGATGCCATGTCCAAGACAT
GGTCTTACACTGACTACAAAATCGAGGCC
Found at i:60468091 original size:45 final size:47
Alignment explanation
Indices: 60467863--60468176 Score: 204
Period size: 47 Copynumber: 6.7 Consensus size: 47
60467853 GTATAATACT
* * * * *
60467863 GATGCCATGTCCCAAACATGGTCTTACACTGGCT-CACCCATC-AAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGTCTACA-TC-TCGTAGCC
* * * **
60467910 GATGCCATGTCCAAGACATGGTCTTACACTGACTTTCAAAATCG-AGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGTC-TAC-ATCTCGTA-GCC
* * *
60467959 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCACATATCTGT-GCT
1 GATGCCATGTCCCAGACATGGTCTTACACT-G-TCT-ACATCTC-GTAGCC
* *
60468009 GATGCCATGTCACAGACATGGTCTTACACTGAC-ACATCTCGTAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGTCTACATCTCGTAGCC
60468055 GATG-CATGTCCCA-ACAT-GTCTTACACTGTCTTACATCTCG-AGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGTC-TACATCTCGTA-GCC
* * * * *
60468100 GATG-TATGTCCCAAACAT-GTCTTACACTAGCTCT-CGTCTC-AATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACT-G-TCTACATCTCGTA-GCC
* * *
60468146 GATGCCATGTCCTAGACATGGTTTTATACTG
1 GATGCCATGTCCCAGACATGGTCTTACACTG
60468177 GCTCTCATAA
Statistics
Matches: 220, Mismatches: 27, Indels: 40
0.77 0.09 0.14
Matches are distributed among these distances:
43 12 0.05
44 5 0.02
45 33 0.15
46 38 0.17
47 44 0.20
48 15 0.07
49 33 0.15
50 37 0.17
51 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGTCTACATCTCGTAGCC
Found at i:60468149 original size:46 final size:45
Alignment explanation
Indices: 60467863--60468127 Score: 137
Period size: 50 Copynumber: 5.6 Consensus size: 45
60467853 GTATAATACT
* * * *
60467863 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCAC-CCATCAA-GTC
1 GATG-CATGTCCC-AACAT-GTCTTACACTGTCTTACATC-TCAAGGCC
* * * ** *
60467910 GATGCCATGTCCAAGACATGGTCTTACACTGACTTTCAAAATCGAGGCC
1 GATG-CATGTCCCA-ACAT-GTCTTACACTGTCTTAC-ATCTCAAGGCC
* * * * *
60467959 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCACATATC-TGTGCT
1 GATG-CATGTCCCA-ACAT-GTCTTACACT-G-TCTTACATCTCAAG-GCC
* * *
60468009 GATGCCATGTCACAGACATGGTCTTACACTGAC--ACATCTCGTA-GCC
1 GATG-CATGTCCCA-ACAT-GTCTTACACTGTCTTACATCTC-AAGGCC
*
60468055 GATGCATGTCCCAACATGTCTTACACTGTCTTACATCTCGAGGCC
1 GATGCATGTCCCAACATGTCTTACACTGTCTTACATCTCAAGGCC
*
60468100 GATGTATGTCCCAAACATGTCTTACACT
1 GATGCATGTCCC-AACATGTCTTACACT
60468128 AGCTCTCGTC
Statistics
Matches: 180, Mismatches: 25, Indels: 27
0.78 0.11 0.12
Matches are distributed among these distances:
43 12 0.07
44 5 0.03
45 29 0.16
46 28 0.16
47 31 0.17
48 4 0.02
49 33 0.18
50 35 0.19
51 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (45 bp):
GATGCATGTCCCAACATGTCTTACACTGTCTTACATCTCAAGGCC
Found at i:60469574 original size:27 final size:27
Alignment explanation
Indices: 60469544--60469721 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
60469534 ATATTGAGTC
* * * *
60469544 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
60469571 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
60469598 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
60469626 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
60469653 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
60469680 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
60469707 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60469722 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:60469683 original size:82 final size:81
Alignment explanation
Indices: 60469565--60469720 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60469555 TGCTATATAA
* *
60469565 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
60469630 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
60469647 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
60469711 CACTTAGTGC
65 CACTTAGTGC
60469721 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:60477603 original size:27 final size:27
Alignment explanation
Indices: 60477573--60477750 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
60477563 ATATTGAGTC
* * * *
60477573 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
60477600 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
60477627 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
60477655 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
60477682 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
60477709 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
60477736 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60477751 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:60477712 original size:82 final size:81
Alignment explanation
Indices: 60477594--60477749 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60477584 TGCTATATAA
* *
60477594 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
60477659 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
60477676 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
60477740 CACTTAGTGC
65 CACTTAGTGC
60477750 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:60482387 original size:102 final size:102
Alignment explanation
Indices: 60482211--60482443 Score: 387
Period size: 102 Copynumber: 2.3 Consensus size: 102
60482201 GTGAGAACAT
* *
60482211 ATGTGTAGTACTATGT-ACAGGCTACTATGTGTTTAAGACAGTTTTAGGTCCCGTGTGTAGTACT
1 ATGTGTAGTACTATGTGA-AGGCTACTATGTGTTTAAGACAGTTTTAGGTCACGTGTATAGTACT
60482275 AAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTAGC
65 AAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTAGC
60482313 ATGTGTAGTACTATGTGAAGGCTACTATGTGTTTAAGACAGTTTTAGGTCACGTGTATAGTACTA
1 ATGTGTAGTACTATGTGAAGGCTACTATGTGTTTAAGACAGTTTTAGGTCACGTGTATAGTACTA
* * *
60482378 AGTGCAGGCTACTATGTGTACTAGATTGTTAGGTCGC
66 AGTGCAGGCTACTACGTGTACCAGATTGTTAGGTAGC
* *
60482415 ATGTGTAGTACTAAGTGTAGGCTACTATG
1 ATGTGTAGTACTATGTGAAGGCTACTATG
60482444 AGTACTGGAG
Statistics
Matches: 123, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
102 122 0.99
103 1 0.01
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (102 bp):
ATGTGTAGTACTATGTGAAGGCTACTATGTGTTTAAGACAGTTTTAGGTCACGTGTATAGTACTA
AGTGCAGGCTACTACGTGTACCAGATTGTTAGGTAGC
Found at i:60482449 original size:50 final size:50
Alignment explanation
Indices: 60482211--60482449 Score: 234
Period size: 50 Copynumber: 4.7 Consensus size: 50
60482201 GTGAGAACAT
* * * *
60482211 ATGTGTAGTACTATGTACAGGCTACTATGTGT-TTAAGACAGTT-TTAGGTCCC
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACT-AG--A-TTGTTAGGTCGC
* * * *
60482263 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTAGC
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGATTGTTAGGTCGC
* * * *
60482313 ATGTGTAGTACTATGTGAAGGCTACTATGTGT-TTAAGACAGTT-TTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACT-AG--A-TTGTTAGGTCGC
* *
60482365 GTGTATAGTACTAAGTGCAGGCTACTATGTGTACTAGATTGTTAGGTCGC
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGATTGTTAGGTCGC
* *
60482415 ATGTGTAGTACTAAGTGTAGGCTACTATGAGTACT
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACT
60482450 GGAGAGCTTT
Statistics
Matches: 153, Mismatches: 26, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
49 4 0.03
50 78 0.51
52 68 0.44
53 3 0.02
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (50 bp):
ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGATTGTTAGGTCGC
Found at i:60483258 original size:180 final size:180
Alignment explanation
Indices: 60483001--60483329 Score: 559
Period size: 180 Copynumber: 1.8 Consensus size: 180
60482991 ATCCGAGATC
* * *
60483001 TGTACCATGAGATAAATATTTTTTAGTGAAGAAAGATTGGAACTATCAGACAGTGAAATAGGGGT
1 TGTACCATGAGATAAATATTTTTTAGTGAAGAAAGATTAGAACTATCAGACAATGAAATAGGGGC
* *
60483066 ATATTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTTTGAAAATTTTATGGTAAGAAT
66 AAATTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAATTTTATGGTAAGAAT
60483131 ACACGTGAGTCTAGTTTTTATAAAAGTTAGCAGTTCTTAATTTGGAGTCT
131 ACACGTGAGTCTAGTTTTTATAAAAGTTAGCAGTTCTTAATTTGGAGTCT
* * **
60483181 TGTACCATGAGATAAATATTTTTTAGTGAAGAGAGTTTAGAACTATTGGACAATGAAATAGGGGC
1 TGTACCATGAGATAAATATTTTTTAGTGAAGAAAGATTAGAACTATCAGACAATGAAATAGGGGC
60483246 AAATTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAATTTTATGGTAAGAAT
66 AAATTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAATTTTATGGTAAGAAT
* *
60483311 ATATGTGAGTCTAGTTTTT
131 ACACGTGAGTCTAGTTTTT
60483330 TGGAAAATTA
Statistics
Matches: 138, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
180 138 1.00
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (180 bp):
TGTACCATGAGATAAATATTTTTTAGTGAAGAAAGATTAGAACTATCAGACAATGAAATAGGGGC
AAATTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAATTTTATGGTAAGAAT
ACACGTGAGTCTAGTTTTTATAAAAGTTAGCAGTTCTTAATTTGGAGTCT
Found at i:60484937 original size:46 final size:46
Alignment explanation
Indices: 60484870--60485044 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
60484860 TGTAACCCGC
* * *
60484870 CCATAAGTGAACTCGAACTCAACTCAATGAGCTCGGGCGCTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGCTTACAT
*
60484916 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGATGC-CTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-G-GGCGC---TTACAT
* * * * *
60484966 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACG-TTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGCTT-ACAT
*
60485009 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
60485045 ATCCCTAGTT
Statistics
Matches: 104, Mismatches: 15, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 3 0.03
46 57 0.55
47 27 0.26
48 4 0.04
49 1 0.01
50 5 0.05
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGCTTACAT
Found at i:60484985 original size:93 final size:93
Alignment explanation
Indices: 60484878--60485092 Score: 306
Period size: 93 Copynumber: 2.3 Consensus size: 93
60484868 GCCCATAAGT
* * * * *
60484878 GAACTCGAACTCAACTCAATGAGCTCGGGCGCTT-GCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAATGAGTTCGGACG-TTCACATCCATAAGTGAACTCAGACTCAACTCA
*
60484942 ACGAGCTCAGATGCCTAGTTACATCTCAC
65 ACGAGCTCAGATCCCTAGTTACATCTCAC
* *
60484971 GAACTCGGACTCAACTCAACGAGTTCAGACGTTCACATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAATGAGTTCGGACGTTCACATCCATAAGTGAACTCAGACTCAACTCAA
* *
60485036 CGAGCTCGGATCCCTAGTTACGTCTCAC
66 CGAGCTCAGATCCCTAGTTACATCTCAC
* *
60485064 GAACTCAGAATCAACTCAATGAGTTCGGA
1 GAACTCGGACTCAACTCAATGAGTTCGGA
60485093 TACCCAAATA
Statistics
Matches: 107, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
92 2 0.02
93 105 0.98
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAATGAGTTCGGACGTTCACATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCAGATCCCTAGTTACATCTCAC
Found at i:60484987 original size:47 final size:46
Alignment explanation
Indices: 60484924--60485082 Score: 164
Period size: 47 Copynumber: 3.4 Consensus size: 46
60484914 ATCCATAAGT
*
60484924 GAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGCTCAGAT-CCTAGTTACATCTCAC
* * * *
60484971 GAACTCGGACTCAACTCAACGAGTTCAGA--C--GTTCACATCCATAAGT
1 GAACTCAGACTCAACTCAACGAGCTCAGATCCTAGTT-ACAT-C-TCA-C
* *
60485017 GAACTCAGACTCAACTCAACGAGCTCGGATCCCTAGTTACGTCTCAC
1 GAACTCAGACTCAACTCAACGAGCTCAGAT-CCTAGTTACATCTCAC
*
60485064 GAACTCAGAATCAACTCAA
1 GAACTCAGACTCAACTCAA
60485083 TGAGTTCGGA
Statistics
Matches: 93, Mismatches: 10, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
44 2 0.02
45 2 0.02
46 26 0.28
47 46 0.49
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.32, C:0.31, G:0.16, T:0.21
Consensus pattern (46 bp):
GAACTCAGACTCAACTCAACGAGCTCAGATCCTAGTTACATCTCAC
Found at i:60487514 original size:30 final size:30
Alignment explanation
Indices: 60487470--60487538 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
60487460 TAAAGATAAC
* *
60487470 AAGAAAACC-GAATAAAGAAAT-TCAAGATA
1 AAGAAACCCAGAATAAAGAAATCT-AAAATA
*
60487499 GAGAAACCCAGAATAAAGAAATCTAAAATA
1 AAGAAACCCAGAATAAAGAAATCTAAAATA
60487529 AAGAAACCCA
1 AAGAAACCCA
60487539 AGATACGATA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 7 0.21
30 26 0.76
31 1 0.03
ACGTcount: A:0.61, C:0.14, G:0.13, T:0.12
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCTAAAATA
Found at i:60487518 original size:15 final size:15
Alignment explanation
Indices: 60487470--60487538 Score: 52
Period size: 15 Copynumber: 4.7 Consensus size: 15
60487460 TAAAGATAAC
*
60487470 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
**
60487484 AAGAAATTCA-AGATA
1 AAGAAACCCAGA-ATA
*
60487499 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
* * *
60487514 AAGAAATCTAAAATA
1 AAGAAACCCAGAATA
60487529 AAGAAACCCA
1 AAGAAACCCA
60487539 AGATACGATA
Statistics
Matches: 41, Mismatches: 11, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
14 8 0.20
15 32 0.78
16 1 0.02
ACGTcount: A:0.61, C:0.14, G:0.13, T:0.12
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:60490501 original size:46 final size:46
Alignment explanation
Indices: 60490423--60490691 Score: 201
Period size: 46 Copynumber: 5.8 Consensus size: 46
60490413 TGTAACCCGC
* ** *
60490423 CCATAAGCGAACTCGGACTCAAGTCAGTGAGCTCGGGCACTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACACTCGCAT
* * * *
60490469 CCATAAGTGAACACGGACTCAACTCAACGAGCTCAGATGC-CTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA--CACTCG---CAT
* * ** *
60490519 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGTAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACACTCGCAT
* * * * *
60490562 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGATCCCTAG-TT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA-CACTCGCAT
* * *
60490608 ACGTC-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 -C--CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACACTCGCAT
* *
60490655 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
60490692 TGCCCAAATA
Statistics
Matches: 173, Mismatches: 34, Indels: 32
0.72 0.14 0.13
Matches are distributed among these distances:
43 2 0.01
44 2 0.01
45 5 0.03
46 93 0.54
47 61 0.35
48 5 0.03
49 2 0.01
50 3 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACACTCGCAT
Found at i:60490536 original size:47 final size:47
Alignment explanation
Indices: 60490477--60490639 Score: 188
Period size: 47 Copynumber: 3.5 Consensus size: 47
60490467 ATCCATAAGT
*
60490477 GAACACGGACTCAACTCAACGAGCTCAGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTTACATCTCAC
* * * * * * * *
60490524 GAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGTATCCA--TAAGT
1 GAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGT-TACATCTCA-C
* *
60490570 GAACTCGGACTCAACTCAACGAGCTCAGATCCCTAGTTACGTCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTTACATCTCAC
60490617 GAACTCGGACTCAACTCAACGAG
1 GAACTCGGACTCAACTCAACGAG
60490640 TTCGGACATT
Statistics
Matches: 92, Mismatches: 19, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
45 2 0.02
46 32 0.35
47 56 0.61
48 2 0.02
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTTACATCTCAC
Found at i:60490589 original size:93 final size:93
Alignment explanation
Indices: 60490430--60490695 Score: 415
Period size: 93 Copynumber: 2.9 Consensus size: 93
60490420 CGCCCATAAG
* ** * * * *
60490430 CGAACTCGGACTCAAGTCAGTGAGCTCGGGCACTCGCATCCATAAGTGAACACGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
60490495 ACGAGCTCAGATGCCTAGTTACATCTCA
66 ACGAGCTCAGATGCCTAGTTACATCTCA
* *
60490523 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
60490588 ACGAGCTCAGATCCCTAGTTACGTCTCA
66 ACGAGCTCAGATGCCTAGTTACATCTCA
60490616 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
60490681 ACGAGTTCGGATGCC
66 ACGAGCTCAGATGCC
60490696 CAAATATCTG
Statistics
Matches: 157, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 157 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCAGATGCCTAGTTACATCTCA
Found at i:60492597 original size:49 final size:47
Alignment explanation
Indices: 60492479--60492659 Score: 172
Period size: 47 Copynumber: 3.7 Consensus size: 47
60492469 AGGGTATGAT
* ** *
60492479 GTCGATCCCATGTCCCAGACATGGTCTTACACTGGCTCATGTCTCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGAATCATGTATCAA
*
60492526 GTCGATGCCATGTCCCAAACATGGTCTTACACTGAAT-ATTGTTATCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGAATCA-TG-TATCAA
* * *
60492574 GGTTGATGCCATGTCCCAGACATGGTCTTACACT-AGCTC-TCGCATAT-TA
1 -GTCGATGCCATGTCCCAGACATGGTCTTACACTGA-ATCAT-G--TATCAA
*
60492623 GTGCCGATGCCATGTCTCAGACATGGTCTTACACTGA
1 GT--CGATGCCATGTCCCAGACATGGTCTTACACTGA
60492660 CACATCTCAT
Statistics
Matches: 112, Mismatches: 12, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
46 1 0.01
47 35 0.31
48 9 0.08
49 34 0.30
50 32 0.29
51 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (47 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGAATCATGTATCAA
Found at i:60492677 original size:96 final size:95
Alignment explanation
Indices: 60492486--60492705 Score: 231
Period size: 96 Copynumber: 2.3 Consensus size: 95
60492476 GATGTCGATC
*
60492486 CCATGTCCCAGACATGGTCTTACACTGGCTCATGTCTCAAGTCGATGCCATGTCCCAAACATGGT
1 CCATGTCCCAGACATGGTCTTACACTAGCTCATGTCTCAAGTCGATGCCATGTCCCAAACATGGT
* * * *
60492551 CTTACACTGAATATTGTTATCAAGGTTGATG
66 CTTACACTGAACATTCTCAT-AAGGCTGATG
* *
60492582 CCATGTCCCAGACATGGTCTTACACTAGCTC-TCG-CAT-ATTAGTGCCGATGCCATGTCTCAGA
1 CCATGTCCCAGACATGGTCTTACACTAGCTCAT-GTC-TCA--AGT--CGATGCCATGTCCCAAA
60492644 CATGGTCTTACACTGACACA-TCTCAT-A-GCTGATG
60 CATGGTCTTACACTGA-ACATTCTCATAAGGCTGATG
* *
60492678 -CATGTCCCTGACAT-GTCTTATACTAGCT
1 CCATGTCCCAGACATGGTCTTACACTAGCT
60492706 TACCTTACGA
Statistics
Matches: 108, Mismatches: 9, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
94 13 0.12
95 16 0.15
96 38 0.35
97 4 0.04
99 35 0.32
100 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (95 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTCATGTCTCAAGTCGATGCCATGTCCCAAACATGGT
CTTACACTGAACATTCTCATAAGGCTGATG
Found at i:60492825 original size:140 final size:141
Alignment explanation
Indices: 60492481--60492845 Score: 348
Period size: 140 Copynumber: 2.6 Consensus size: 141
60492471 GGTATGATGT
* * * * **
60492481 CGATCCCATGTCCCAGACATGGTCTTACACTGGCTCATGTCTCA-AG-TCGATGCCATGTCCCAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACA--TCTAATAGCT-GATG-CATGTCCCGG
** ** * * **
60492544 ACATGGTCTTACACT-GAATATTGTTATCAAGGTTGATGCCATGTCCCAGACATGGTCTTACACT
62 ACAT-GTCTTACACTAGCTTA-CCTTA-CGAGGTCGATGCCATGTCCCAGACATCATCTTACACT
* *
60492608 AGCTCTCGCATATTAGTGC
124 AGCTCTCG-ATATCAATGC
* * *
60492627 CGATGCCATGTCTCAGACATGGTCTTACACTGACACATCTCATAGCTGATGCATGTCCCTGACAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTAATAGCTGATGCATGTCCCGGACAT
*
60492692 GTCTTATACTAGCTTACCTTACGAGGTCGATG-CATGTCCCAGACA-CATCTTACACTAGCTCTC
66 GTCTTACACTAGCTTACCTTACGAGGTCGATGCCATGTCCCAGACATCATCTTACACTAGCTCTC
*
60492755 G-TCTCAATGC
131 GATATCAATGC
** * * *
60492765 CGATTTCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAATGTGGCTGATGCATGTCCCGGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACATC-TAA--TAGCTGATGCATGTCCCGGA
60492829 CATGTCTTACACTAGCT
63 CATGTCTTACACTAGCT
60492846 CACAATAGCC
Statistics
Matches: 186, Mismatches: 27, Indels: 18
0.81 0.12 0.08
Matches are distributed among these distances:
137 2 0.01
138 39 0.21
140 51 0.27
141 13 0.07
142 9 0.05
143 12 0.06
144 20 0.11
145 6 0.03
146 34 0.18
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (141 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTAATAGCTGATGCATGTCCCGGACAT
GTCTTACACTAGCTTACCTTACGAGGTCGATGCCATGTCCCAGACATCATCTTACACTAGCTCTC
GATATCAATGC
Found at i:60501741 original size:101 final size:99
Alignment explanation
Indices: 60501553--60501794 Score: 270
Period size: 101 Copynumber: 2.4 Consensus size: 99
60501543 TATTGTGAGG
* * * *** * ** * *
60501553 TCACATATGTAGTACTAAGTGCAAGCTACTACATGTACCGGATAATT-GGTCGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAATGCAGGCTACTATGCGTACCAGATGGTTAGGTCACGTGTGTAGTAC
*
60501617 TAAGTGCAGGCTACTATGCGTACCCGAAAACTTCGA
66 TAAGTGCAGGCTACTACGCGTACCCGAAAA-TT-GA
* * *
60501653 TCACGTGTGTAGTACTAAATGCAGGCTACTATGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACATGTGTAGTACTAAATGCAGGCTACTATGCGTACCAGATGGTTAGGTCACGTGTGTAGTAC
* * * *
60501718 TAAGTGCAGGCTACTACGTGTACCGGATAATTGG
66 TAAGTGCAGGCTACTACGCGTACCCGAAAATTGA
* *
60501752 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 TCACATGTGTAGTACTAAATGCAGGCTACTATGCGTACCAGAT
60501795 AGCCTTGTCT
Statistics
Matches: 119, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
99 39 0.33
100 39 0.33
101 41 0.34
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (99 bp):
TCACATGTGTAGTACTAAATGCAGGCTACTATGCGTACCAGATGGTTAGGTCACGTGTGTAGTAC
TAAGTGCAGGCTACTACGCGTACCCGAAAATTGA
Found at i:60501790 original size:49 final size:50
Alignment explanation
Indices: 60501550--60501795 Score: 280
Period size: 49 Copynumber: 4.9 Consensus size: 50
60501540 ATCTATTGTG
* * ** *
60501550 AGGTCACATATGTAGTACTAAGTGCAAGCTACTACATGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * * *
60501600 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT
* * * * * **
60501650 CGATCACGTGTGTAGTACTAAATGCAGGCTACTATGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * *
60501700 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* *
60501750 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
60501796 GCCTTGTCTA
Statistics
Matches: 163, Mismatches: 31, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
49 80 0.49
50 46 0.28
51 37 0.23
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:60518768 original size:96 final size:96
Alignment explanation
Indices: 60518571--60518939 Score: 533
Period size: 96 Copynumber: 3.8 Consensus size: 96
60518561 GTAAGATGCT
* *
60518571 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATCGATGCCGATGCCATGTTCCAA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC--ATATCAATGCCGATGCCATGTTCCAA
* * *
60518636 ACATGGTCTTACACTAGC-CTACATGTCGAGGTC
64 ACATGGTCTTACACTGGCTC-ACATATCGAGGCC
* *
60518669 GATGCCTTGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCTGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
*
60518734 ATGGTCTTACACTGGCTCACATATCAAGGCC
66 ATGGTCTTACACTGGCTCACATATCGAGGCC
* * *
60518765 GATGCCATATCCCAGACATGGTCTTATACTAGCTCTCATATCAATGCCGATGTCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
* * *
60518830 ATCGTCTTACTCTGGCTCACATATCGAGACC
66 ATGGTCTTACACTGGCTCACATATCGAGGCC
* * **
60518861 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAATGCTGATGTAATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
*
60518926 ATGGTCTCACACTG
66 ATGGTCTTACACTG
60518940 TGTAACACCC
Statistics
Matches: 245, Mismatches: 25, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
96 209 0.85
97 1 0.00
98 35 0.14
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
ATGGTCTTACACTGGCTCACATATCGAGGCC
Found at i:60518939 original size:48 final size:48
Alignment explanation
Indices: 60518566--60518938 Score: 417
Period size: 48 Copynumber: 7.7 Consensus size: 48
60518556 AAAGGGTAAG
* *
60518566 ATGCTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTC--ATATCA
* * *
60518616 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGC-CTACATGTCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCT-CATATCA
* * * *
60518664 AGGTCGATGCCTTGTCCCAGACATGGTCTTACACTAGCTCTCATATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* * * *
60518712 ATGCTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* * * *
60518760 AGGCCGATGCCATATCCCAGACATGGTCTTATACTAGCTCTCATATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* * * * * * *
60518808 ATGCCGATGTCATGTTCCAAACATCGTCTTACTCTGGCTCACATATCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* *
60518856 A-GACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCA
1 ATG-CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
* ** * *
60518904 ATGCTGATGTAATGTTCCAAACATGGTCTCACACT
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACT
60518939 GTGTAACACC
Statistics
Matches: 269, Mismatches: 50, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
47 1 0.00
48 226 0.84
49 5 0.02
50 37 0.14
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.29
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
Found at i:60520354 original size:40 final size:40
Alignment explanation
Indices: 60520317--60520578 Score: 338
Period size: 40 Copynumber: 6.6 Consensus size: 40
60520307 GCTACTCGTT
*
60520317 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
60520357 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
60520397 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
60520436 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
*
60520476 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
60520516 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
60520557 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
60520579 AGACATCATT
Statistics
Matches: 204, Mismatches: 13, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
38 2 0.01
39 33 0.16
40 156 0.76
41 13 0.06
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:60525219 original size:18 final size:19
Alignment explanation
Indices: 60525187--60525223 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
60525177 TGGTCTCGAT
60525187 TTTTCTAAAGGTATCAATA
1 TTTTCTAAAGGTATCAATA
*
60525206 TTTTC-AAAGTTATCAATA
1 TTTTCTAAAGGTATCAATA
60525224 CTTGTCCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.38, C:0.11, G:0.08, T:0.43
Consensus pattern (19 bp):
TTTTCTAAAGGTATCAATA
Found at i:60525316 original size:20 final size:20
Alignment explanation
Indices: 60525285--60525336 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
60525275 TAAAAAAAAT
*
60525285 TTAAAATGATTTTAACATGA
1 TTAAAATCATTTTAACATGA
* * * *
60525305 TTGAAATCATTTTGACTTGG
1 TTAAAATCATTTTAACATGA
60525325 TTAAAATCATTT
1 TTAAAATCATTT
60525337 GCACTTGATT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.37, C:0.08, G:0.12, T:0.44
Consensus pattern (20 bp):
TTAAAATCATTTTAACATGA
Found at i:60526985 original size:33 final size:33
Alignment explanation
Indices: 60526939--60527009 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
60526929 AAATTCATAT
* *
60526939 ATCATGTATATCATTTGTAACATTTCACTCTCA
1 ATCATGTACATCATTTGAAACATTTCACTCTCA
60526972 ATCATGTACATCATTTGAAACATTTCACTCTCA
1 ATCATGTACATCATTTGAAACATTTCACTCTCA
60527005 ATCAT
1 ATCAT
60527010 ATAAACAGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.32, C:0.23, G:0.06, T:0.39
Consensus pattern (33 bp):
ATCATGTACATCATTTGAAACATTTCACTCTCA
Found at i:60531255 original size:143 final size:143
Alignment explanation
Indices: 60531061--60531478 Score: 538
Period size: 143 Copynumber: 2.9 Consensus size: 143
60531051 TATCCATAAC
* * * *
60531061 TTGTAGCTTTAATCTACTCCGCTGCAATTTCAGGGAAATAAGATTAGCTATCTTCAATCTGCTCC
1 TTGTAGCTTTAATCTATTCCACTGCAATATCAGGGAAATAAGATTAGCTATCTTCAGTCTGCTCC
* * *
60531126 GCTACAACTTCAAGGAGATAAGGCTGATGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATAA
66 GCTGCAACTTCAAGGAGATAAGGCTGATGGCTTCAATCTGCTCCACTGTAACTTCAGGAAGATAA
*
60531191 GATTTGTCA-CAAT
131 GATTTGCCATC-AT
* * * * * *
60531204 TTGTAGCTTTAATTTGTTCCACTGCAACATCAGGGAAATAAGATTCGCTATCTCCAGTCTACTCC
1 TTGTAGCTTTAATCTATTCCACTGCAATATCAGGGAAATAAGATTAGCTATCTTCAGTCTGCTCC
* * * *
60531269 GCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACAGTAACTTTAGGAAGATAA
66 GCTGCAACTTCAAGGAGATAAGGCTGATGGCTTCAATCTGCTCCACTGTAACTTCAGGAAGATAA
60531334 GATTTGCCATCAT
131 GATTTGCCATCAT
* * * * *
60531347 TTATAGCTTTAATCTATTCCACTTCAATGTCAGGGAAATAAGATTTGCTGTC-TCTAGTCTGCT-
1 TTGTAGCTTTAATCTATTCCACTGCAATATCAGGGAAATAAGATTAGCTATCTTC-AGTCTGCTC
* * * *
60531410 CGCTGCAACTTCAAGGAGATAAGGCT-AGTGGTTTCAATTTGCTCCACTATAACTTCTGGAAGAT
65 CGCTGCAACTTCAAGGAGATAAGGCTGA-TGGCTTCAATCTGCTCCACTGTAACTTCAGGAAGAT
60531474 AAGAT
129 AAGAT
60531479 CTGTTATCTT
Statistics
Matches: 236, Mismatches: 36, Indels: 7
0.85 0.13 0.03
Matches are distributed among these distances:
142 61 0.26
143 174 0.74
144 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (143 bp):
TTGTAGCTTTAATCTATTCCACTGCAATATCAGGGAAATAAGATTAGCTATCTTCAGTCTGCTCC
GCTGCAACTTCAAGGAGATAAGGCTGATGGCTTCAATCTGCTCCACTGTAACTTCAGGAAGATAA
GATTTGCCATCAT
Found at i:60531522 original size:89 final size:88
Alignment explanation
Indices: 60531402--60531663 Score: 321
Period size: 89 Copynumber: 3.0 Consensus size: 88
60531392 TGCTGTCTCT
* * * * * * *
60531402 AGTCTGCTCGCTGCAACTTCAAGGAGATAAGGCTAGTGGTTTCAATTTGCTCCACTATAACTTCT
1 AGTCTGCTCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTACAACTTCA
** **
60531467 GGAAGATAAGA-TCTGTTATCTTC
66 AAAAGATAAGATTC-GCCATCTTC
*
60531490 AGTCTGCTCTGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCATTACAACTTC
1 AGTCTGCTC-GCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTACAACTTC
*
60531555 AAAAATATAAGATTCGCCATCTTC
65 AAAAAGATAAGATTCGCCATCTTC
* * *
60531579 AGTCTGCTCCACTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTACTTCACTACAACTTC
1 AGTCTGCT-CGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTACAACTTC
*
60531644 AAGAAA-ATAAGATTTGCCAT
65 AA-AAAGATAAGATTCGCCAT
60531664 AATTTGTAGC
Statistics
Matches: 152, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
88 9 0.06
89 137 0.90
90 6 0.04
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (88 bp):
AGTCTGCTCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTACAACTTCA
AAAAGATAAGATTCGCCATCTTC
Found at i:60531552 original size:44 final size:44
Alignment explanation
Indices: 60531415--60531644 Score: 147
Period size: 44 Copynumber: 5.2 Consensus size: 44
60531405 CTGCTCGCTG
* * * * *
60531415 CAACTTCAAGGAGATAAGGCTAGTGGTTTCAATTTGCTCCACTA
1 CAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTA
* * * * * ** * * *
60531459 TAACTTCTGGAAGATAAGATCTGTTATCTTCAGTCTGC-TCTGCTG
1 CAACTTCAGGGAGATAAG-GCTGGTGGCTTCAATCTGCTTC-ACTA
*
60531504 CAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCATTA
1 CAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTA
*** * ** **** * * *
60531548 CAACTTCAAAAATATAAGATTCGCCATCTTCAGTCTGCTCCACTG
1 CAACTTCAGGGAGATAAGGCT-GGTGGCTTCAATCTGCTTCACTA
* *
60531593 CAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTACTTCACTA
1 CAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTA
60531637 CAACTTCA
1 CAACTTCA
60531645 AGAAAATAAG
Statistics
Matches: 126, Mismatches: 56, Indels: 8
0.66 0.29 0.04
Matches are distributed among these distances:
44 67 0.53
45 59 0.47
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (44 bp):
CAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTA
Found at i:60531676 original size:320 final size:320
Alignment explanation
Indices: 60531239--60531894 Score: 872
Period size: 320 Copynumber: 2.0 Consensus size: 320
60531229 AACATCAGGG
* *
60531239 AAATAAGATTCGCTATCTCCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCA
1 AAATAAGATTCGCCATCTCCAGTCTACTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCA
* * * * * * *
60531304 ATCTGCTCCACAGTAACTTTAGGAAGATAAGATTTGCCATCATTTATAGCTTTAATCTATTCCAC
66 ATCTACTCCACAGCAACTTCAAGAAAATAAGATTTGCCATAATTTATAGCTTTAATATATTCCAC
* ** * ** *
60531369 TTCAATGTCAGGGAAATAAGATTTGCTGTC-TCTAGTCTGCT-CGCTGCAACTTCA-AGGAGATA
131 TGCAACATCAAGGAAATAAGATTCACTGTCTTC-AGTCTACTCCGCTGCAACTTCAGA-GAGATA
* * * * * **
60531431 AGGCTAGTGGTTTCAATTTGCTCCACTATAACTTCTGGAAGATAAGATCTGTTATCTTCAGTCTG
194 AGGCCAGTGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATAAGATCTGCCATCTTCAGTCTG
* * * *
60531496 CTCTGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCATTACAACTTCA-AA
259 CTCCGCT-CAACTTCAGGGAGATAAGGCTAGTGGCTTCAATCTACTTCACTACAACTTCAGAA
* * *
60531558 AATATAAGATTCGCCATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGGCTGGTGGCTTC
1 AA-ATAAGATTCGCCATCTCCAGTCTACTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC
* * *
60531623 AATCTACTTCACTA-CAACTTCAAGAAAATAAGATTTGCCATAATTTGTAGCTTTAATATGTTCC
65 AATCTACTCCAC-AGCAACTTCAAGAAAATAAGATTTGCCATAATTTATAGCTTTAATATATTCC
60531687 ACTGCAACATCAAGGAAATAAGATTCACTGTCTTCAGTCTACTCCGCTGCAACTTCAGAGAGATA
129 ACTGCAACATCAAGGAAATAAGATTCACTGTCTTCAGTCTACTCCGCTGCAACTTCAGAGAGATA
* * * *
60531752 AGGCCGGTGGCTTCAATCTGCTCCATTACAACTTCAGGAATATAAGATTTGCCATCTTCAGTCTG
194 AGGCCAGTGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATAAGATCTGCCATCTTCAGTCTG
* *
60531817 CTCCGCTCAACTTCAGGGAGATAAGGCTAGTGGCTTCAATCTACTTCACTGCAACTTCAGGA
259 CTCCGCTCAACTTCAGGGAGATAAGGCTAGTGGCTTCAATCTACTTCACTACAACTTCAGAA
*
60531879 AAATGAGATTCGCCAT
1 AAATAAGATTCGCCAT
60531895 AATTTGTAGC
Statistics
Matches: 291, Mismatches: 40, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
319 2 0.01
320 203 0.70
321 85 0.29
322 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (320 bp):
AAATAAGATTCGCCATCTCCAGTCTACTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCA
ATCTACTCCACAGCAACTTCAAGAAAATAAGATTTGCCATAATTTATAGCTTTAATATATTCCAC
TGCAACATCAAGGAAATAAGATTCACTGTCTTCAGTCTACTCCGCTGCAACTTCAGAGAGATAAG
GCCAGTGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATAAGATCTGCCATCTTCAGTCTGCT
CCGCTCAACTTCAGGGAGATAAGGCTAGTGGCTTCAATCTACTTCACTACAACTTCAGAA
Found at i:60531850 original size:88 final size:89
Alignment explanation
Indices: 60531684--60531894 Score: 255
Period size: 88 Copynumber: 2.4 Consensus size: 89
60531674 TTTAATATGT
* * * **
60531684 TCCACTGCAACATCAAGG-AAATAAGATTCACTGTCTTCAGTCTACTCCGCTGCAACTTCAGAGA
1 TCCACTACAACTTC-AGGAAAATAAGATTCGCCATCTTCAGTCTACTCCGCTGCAACTTCAGAGA
* *
60531748 GATAAGGCCGGTGGCTTCAATCTGC
65 GATAAGGCCAGTGGCTTCAATCTAC
* * * * *
60531773 TCCATTACAACTTCAGGAATATAAGATTTGCCATCTTCAGTCTGCTCCGCT-CAACTTCAGGGAG
1 TCCACTACAACTTCAGGAAAATAAGATTCGCCATCTTCAGTCTACTCCGCTGCAACTTCAGAGAG
*
60531837 ATAAGGCTAGTGGCTTCAATCTAC
66 ATAAGGCCAGTGGCTTCAATCTAC
* * *
60531861 TTCACTGCAACTTCAGGAAAATGAGATTCGCCAT
1 TCCACTACAACTTCAGGAAAATAAGATTCGCCAT
60531895 AATTTGTAGC
Statistics
Matches: 102, Mismatches: 19, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
88 64 0.63
89 38 0.37
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (89 bp):
TCCACTACAACTTCAGGAAAATAAGATTCGCCATCTTCAGTCTACTCCGCTGCAACTTCAGAGAG
ATAAGGCCAGTGGCTTCAATCTAC
Found at i:60531942 original size:231 final size:231
Alignment explanation
Indices: 60531098--60532261 Score: 1117
Period size: 231 Copynumber: 5.0 Consensus size: 231
60531088 TTTCAGGGAA
* * * * * *
60531098 ATAAGATTAGCTATCTTCAATCTGCTCCGCTACAACTTCAAGGAGATAAGGCTGATGGCTTCAAT
1 ATAAGATTTGCCATCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAAT
* * * * * * *
60531163 CTACTCCACTGCAACTTCAGGAAGATAAGATTTGTCACAATTTGTAGCTTTAATTTGTTCCACTG
66 CTACTTCACTACAACTTCA-GAAAATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTG
* * * * * *
60531228 CAACATCAGGGAAATAAGATTCGCTATCTCCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGC
130 CAACATCAAGGAAATAAGATTCACTGTCTTCAGTCTGCTCCGCTGCAACTTCAGAGAGATAAGGC
* * *
60531293 TGGTGGCTTCAATCTGCTCCAC-AGTAACTTTAGGAAG
195 TGGTGGCTTCAATCTGCTCCACTA-CAACTTCAAGAAG
* ** * * * **
60531330 ATAAGATTTGCCATCATTTATAGCTTTAATCTATTCCACTTCAA-TGTCAGGGAAATAAGATTTG
1 ATAAGATTTGCCATC---T-T--C---AGTCTGCTCCGCTGCAACT-TCAGGGAGATAAG-GCTG
* * * * * * * * *
60531394 CTGTC-TCTAGTCTGC-TCGCTGCAACTTCAAGGAGATAAG----G-C-T-A---GT-GGTTTCA
55 GTGGCTTC-AATCTACTTCACTACAACTTC-AGAAAATAAGATTCGCCATAATTTGTAGCTTT-A
* * ** * * ** * *
60531446 ATTTGCTCCACTATAACTTC-TGGAAGATAAGA-TCTGTTATCTTCAGTCTGCTCTGCTGCAACT
117 ATCTGTTCCACTGCAACATCAAGGAA-ATAAGATTC-ACTGTCTTCAGTCTGCTCCGCTGCAACT
* * * * *
60531509 TCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCATTACAACTTCAAAAAT
180 TCAGAGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTACAACTTCAAGAAG
* * *
60531561 ATAAGATTCGCCATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAAT
1 ATAAGATTTGCCATCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAAT
* *
60531626 CTACTTCACTACAACTTCAAGAAAATAAGATTTGCCATAATTTGTAGCTTTAATATGTTCCACTG
66 CTACTTCACTACAACTTC-AGAAAATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTG
*
60531691 CAACATCAAGGAAATAAGATTCACTGTCTTCAGTCTACTCCGCTGCAACTTCAGAGAGATAAGGC
130 CAACATCAAGGAAATAAGATTCACTGTCTTCAGTCTGCTCCGCTGCAACTTCAGAGAGATAAGGC
* * * *
60531756 CGGTGGCTTCAATCTGCTCCATTACAACTTCAGGAAT
195 TGGTGGCTTCAATCTGCTCCACTACAACTTCAAGAAG
*
60531793 ATAAGATTTGCCATCTTCAGTCTGCTCCGCT-CAACTTCAGGGAGATAAGGCTAGTGGCTTCAAT
1 ATAAGATTTGCCATCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAAT
* *
60531857 CTACTTCACTGCAACTTCAGGAAAATGAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTG
66 CTACTTCACTACAACTTCA-GAAAATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTG
* * ** * *
60531922 CAACGTCAAGGAAATAAGATTCACTGTCTTTAGTCTGCTCCGCTATAACTTTAGAGGGATAAGGC
130 CAACATCAAGGAAATAAGATTCACTGTCTTCAGTCTGCTCCGCTGCAACTTCAGAGAGATAAGGC
* *
60531987 TGGTGGCTTCAATCTACTCCACTGCAACTTCAAGAAG
195 TGGTGGCTTCAATCTGCTCCACTACAACTTCAAGAAG
* * * * *
60532024 ATAAGATCTT-CTATCTTCAGTCTACTCAGCTGCAACTTCAAGGAGTTAA-GCTGGTGGCTTCAA
1 ATAAGAT-TTGCCATCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAA
* * * * *
60532087 TCTGCTCCACTACAACTCCAGAAAGATAAGATTCTCCATAATTTGTAGCTTTAATCTATTCCACT
65 TCTACTTCACTACAACTTCAGAAA-ATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACT
* * ** * * * *
60532152 GTAACATCAGGGAAATAAGATTTGCTGTCTTCAGTCTGCTTCACTGTAACTTCAGGGAGATAAGG
129 GCAACATCAAGGAAATAAGATTCACTGTCTTCAGTCTGCTCCGCTGCAACTTCAGAGAGATAAGG
* * * *
60532217 CTGGTGGCTTCAATCTGCTTCACTGCGACTTCAGGAAG
194 CTGGTGGCTTCAATCTGCTCCACTACAACTTCAAGAAG
60532255 ATAAGAT
1 ATAAGAT
60532262 CTACCATATT
Statistics
Matches: 776, Mismatches: 119, Indels: 75
0.80 0.12 0.08
Matches are distributed among these distances:
221 10 0.01
222 46 0.06
223 1 0.00
225 1 0.00
226 1 0.00
227 2 0.00
228 2 0.00
229 1 0.00
230 15 0.02
231 470 0.61
232 154 0.20
233 10 0.01
234 1 0.00
235 1 0.00
236 2 0.00
237 1 0.00
238 1 0.00
240 1 0.00
241 45 0.06
242 11 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (231 bp):
ATAAGATTTGCCATCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAAT
CTACTTCACTACAACTTCAGAAAATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTGC
AACATCAAGGAAATAAGATTCACTGTCTTCAGTCTGCTCCGCTGCAACTTCAGAGAGATAAGGCT
GGTGGCTTCAATCTGCTCCACTACAACTTCAAGAAG
Found at i:60531985 original size:463 final size:457
Alignment explanation
Indices: 60531098--60532261 Score: 1248
Period size: 463 Copynumber: 2.5 Consensus size: 457
60531088 TTTCAGGGAA
* * * * *
60531098 ATAAGATTAGCTATCTTCAATCTGCTCCGCTACAACTTCAAGGAGATAAGGCTGATGGCTTCAAT
1 ATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCAAT
* * * * * *
60531163 CTACTCCACTGCAACTTCAGGAAGATAAGATTTGTCACAATTTGTAGCTTTAATTTGTTCCACTG
66 CTACTCCACTACAACTTCAAGAAAATAAGATTTGCCATAATTTGTAGCTTTAATATGTTCCACTG
* *
60531228 CAACATCAGGGAAATAAGATTCGCTATCTCCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGC
131 CAACATCAGGGAAATAAGATTCGCTGTCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGC
* * *
60531293 TGGTGGCTTCAATCTGCTCCACAGTAACTTTAGGAAGATAAGATTTGCCATCATTTATAGCTTTA
196 TGGTGGCTTCAATCTGCTCCATA-CAACTTCAGGAAGATAAGATTTGCCATC--TTATA-C--TA
* * * * * * *
60531358 ATCTATTCCACTTCAATGTCAGGGAAATAAGATTTGCTGTCTCTAGTCTGCTCGCTGCAACTTCA
255 ATCTACTCCACTTCAATGTCAGGGAAATAAGACTAGCTGGCTCTAATCTACTCACTGCAACTTCA
* * * * * * * **
60531423 AGGAGATAAGGCTAGTGGTTTCAATTTGCTCCACTATAACTTCTGGAAGATAAGATCTGTTATCT
320 AGGAAATAAGCCTAGTGCTTTCAATCTGCTCCACTACAACGTCAGGAAGATAAGATCTACTATCT
* * * * *
60531488 TCAGTCTGCTCTGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCATTACAACT
385 TCAGTCTGCTCCGCTACAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTACAACT
*
60531553 TCAAAAAT
450 TCAAAAAG
* * *
60531561 ATAAGATTCGCCATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAAT
1 ATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCAAT
*
60531626 CTACTTCACTACAACTTCAAGAAAATAAGATTTGCCATAATTTGTAGCTTTAATATGTTCCACTG
66 CTACTCCACTACAACTTCAAGAAAATAAGATTTGCCATAATTTGTAGCTTTAATATGTTCCACTG
* * *
60531691 CAACATCAAGGAAATAAGATTCACTGTCTTCAGTCTACTCCGCTGCAACTTCAGAGAGATAAGGC
131 CAACATCAGGGAAATAAGATTCGCTGTCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGC
* * * *
60531756 CGGTGGCTTCAATCTGCTCCATTACAACTTCAGGAATATAAGATTTGCCATC-T-T-C-AGTCTG
196 TGGTGGCTTCAATCTGCTCCA-TACAACTTCAGGAAGATAAGATTTGCCATCTTATACTAATCTA
* * *
60531817 CTCCGC-TCAACT-TCAGGGAGATAAGGCTAG-TGGCT-TCAATCTACTTCACTGCAACTTC-AG
260 CTCCACTTCAA-TGTCAGGGAAATAAGACTAGCTGGCTCT-AATCTAC-TCACTGCAACTTCAAG
* *
60531877 GAAAATGAGATTCGCCATAATTTGTAGCTTT-AATCTGTTCCACTGCAACGTCAAGGAA-ATAAG
322 G-AAAT-A-A---GCC-T-A---GT-GCTTTCAATCTGCTCCACTACAACGTC-AGGAAGATAAG
* * * *
60531940 AT-TCACTGTCTTTAGTCTGCTCCGCTATAACTTTAGAGG-GATAAGGCTGGTGGCTTCAATCTA
374 ATCT-ACTATCTTCAGTCTGCTCCGCTACAACTTCAG-GGAGATAAGGCTGGTGGCTTCAATCTA
* *
60532003 CTCCACTGCAACTTCAAGAAG
437 CTCCACTACAACTTCAAAAAG
* * *
60532024 ATAAGA-TCTTCTATCTTCAGTCTACT-CAGCTGCAACTTCAAGGAGTTAA-GCTGGTGGCTTCA
1 ATAAGATTC-GCTATCTTCAGTCTGCTCCA-CTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCA
* * * *
60532086 ATCTGCTCCACTACAAC-TCCAGAAAGATAAGATTCT-CCATAATTTGTAGCTTTAATCTATTCC
64 ATCTACTCCACTACAACTTCAAGAAA-ATAAGATT-TGCCATAATTTGTAGCTTTAATATGTTCC
* * * * * *
60532149 ACTGTAACATCAGGGAAATAAGATTTGCTGTCTTCAGTCTGCTTCACTGTAACTTCAGGGAGATA
127 ACTGCAACATCAGGGAAATAAGATTCGCTGTCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATA
* * *
60532214 AGGCTGGTGGCTTCAATCTGCTTCACTGCGACTTCAGGAAGATAAGAT
192 AGGCTGGTGGCTTCAATCTGCTCCA-TACAACTTCAGGAAGATAAGAT
60532262 CTACCATATT
Statistics
Matches: 592, Mismatches: 86, Indels: 47
0.82 0.12 0.06
Matches are distributed among these distances:
451 1 0.00
452 12 0.02
453 33 0.06
454 10 0.02
455 1 0.00
457 1 0.00
458 2 0.00
459 2 0.00
460 2 0.00
461 7 0.01
462 164 0.28
463 346 0.58
464 11 0.02
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (457 bp):
ATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCAAT
CTACTCCACTACAACTTCAAGAAAATAAGATTTGCCATAATTTGTAGCTTTAATATGTTCCACTG
CAACATCAGGGAAATAAGATTCGCTGTCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGC
TGGTGGCTTCAATCTGCTCCATACAACTTCAGGAAGATAAGATTTGCCATCTTATACTAATCTAC
TCCACTTCAATGTCAGGGAAATAAGACTAGCTGGCTCTAATCTACTCACTGCAACTTCAAGGAAA
TAAGCCTAGTGCTTTCAATCTGCTCCACTACAACGTCAGGAAGATAAGATCTACTATCTTCAGTC
TGCTCCGCTACAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTACAACTTCAAAA
AG
Found at i:60532061 original size:89 final size:87
Alignment explanation
Indices: 60531915--60532120 Score: 220
Period size: 89 Copynumber: 2.3 Consensus size: 87
60531905 TTTAATCTGT
* * * * * *
60531915 TCCACTGCAACGTCAAGGAA-ATAAGATTCACTGTCTTTAGTCTGCTCCGCTATAACTTTAGAGG
1 TCCACTGCAAC-TCAA-GAAGATAAGATTCACTATCTTCAGTCTACTCAGCTACAACTTCA-AGG
60531979 -GATAAGGCTGGTGGCTTCAATCTAC
63 AGATAA-GCTGGTGGCTTCAATCTAC
* *
60532004 TCCACTGCAACTTCAAGAAGATAAGA-TCTTCTATCTTCAGTCTACTCAGCTGCAACTTCAAGGA
1 TCCACTGCAAC-TCAAGAAGATAAGATTC-ACTATCTTCAGTCTACTCAGCTACAACTTCAAGGA
* *
60532068 GTTAAGCTGGTGGCTTCAATCTGC
64 GATAAGCTGGTGGCTTCAATCTAC
* *
60532092 TCCACTACAACTCCAGAAAGATAAGATTC
1 TCCACTGCAACTCAAG-AAGATAAGATTC
60532121 TCCATAATTT
Statistics
Matches: 99, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
87 4 0.04
88 45 0.45
89 50 0.51
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.28
Consensus pattern (87 bp):
TCCACTGCAACTCAAGAAGATAAGATTCACTATCTTCAGTCTACTCAGCTACAACTTCAAGGAGA
TAAGCTGGTGGCTTCAATCTAC
Found at i:60532199 original size:45 final size:44
Alignment explanation
Indices: 60532148--60532241 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 44
60532138 TAATCTATTC
** * *
60532148 CACTGTAACATCAGGGAAATAAGATTTGCTGTCTTCAGTCTGCTT
1 CACTGTAACATCAGGGAAATAAG-GCTGCTGGCTTCAATCTGCTT
* * *
60532193 CACTGTAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTT
1 CACTGTAACATCAGGGAAATAAGGCTGCTGGCTTCAATCTGCTT
60532237 CACTG
1 CACTG
60532242 CGACTTCAGG
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 21 0.50
45 21 0.50
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.31
Consensus pattern (44 bp):
CACTGTAACATCAGGGAAATAAGGCTGCTGGCTTCAATCTGCTT
Found at i:60532273 original size:142 final size:142
Alignment explanation
Indices: 60531992--60532273 Score: 349
Period size: 142 Copynumber: 2.0 Consensus size: 142
60531982 AAGGCTGGTG
*
60531992 GCTTCAATCTACTCCACTGCAACTTCAAGAAGATAAGATCTTCTATCTTCAGTCTACTCAGCTGC
1 GCTTCAATCTACTCCACTGCAACATCAAGAAGATAAGATCTTCTATCTTCAGTCTACTCAGCTGC
*
60532057 AACTTCAAGGAGTTAAGCTGGTGGCTTCAATCTGCTCCACTACAACTCCAGAAAGATAAGATTCT
66 AACTTCAAGGAGATAAGCTGGTGGCTTCAATCTGCTCCACTACAACTCCAGAAAGATAAGATTCT
60532122 CCATAATTTGTA
131 CCATAATTTGTA
* * * * * *
60532134 GCTTTAATCTATTCCACTGTAACATCAGGGAA-ATAAGAT-TTGCTGTCTTCAGTCTGCTTCA-C
1 GCTTCAATCTACTCCACTGCAACATCA-AGAAGATAAGATCTT-CTATCTTCAGTCTAC-TCAGC
* * * * * * *
60532196 TGTAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCGACTTCAGGAAGATAAGA
63 TGCAACTTCAAGGAGATAA-GCTGGTGGCTTCAATCTGCTCCACTACAACTCCAGAAAGATAAGA
60532261 -TCTACCAT-ATTTG
127 TTCT-CCATAATTTG
60532274 ATCTACTCCA
Statistics
Matches: 120, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
141 2 0.02
142 68 0.57
143 50 0.42
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (142 bp):
GCTTCAATCTACTCCACTGCAACATCAAGAAGATAAGATCTTCTATCTTCAGTCTACTCAGCTGC
AACTTCAAGGAGATAAGCTGGTGGCTTCAATCTGCTCCACTACAACTCCAGAAAGATAAGATTCT
CCATAATTTGTA
Found at i:60533902 original size:22 final size:22
Alignment explanation
Indices: 60533877--60533937 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
60533867 ATACGATTGC
*
60533877 CACACAGCCATAATCAGGTTGG
1 CACAAAGCCATAATCAGGTTGG
* *
60533899 CACAGAGCCAT-ATGTAGGTTGG
1 CACAAAGCCATAAT-CAGGTTGG
**
60533921 TGCAAAGCCATAATCAG
1 CACAAAGCCATAATCAG
60533938 AATAATTGGC
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
21 2 0.06
22 27 0.87
23 2 0.06
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.20
Consensus pattern (22 bp):
CACAAAGCCATAATCAGGTTGG
Found at i:60534141 original size:41 final size:41
Alignment explanation
Indices: 60534079--60534197 Score: 195
Period size: 41 Copynumber: 2.9 Consensus size: 41
60534069 TAAAAGCGAC
* *
60534079 CGGTGGATCCACGATCCTCAAGCAACCATGTGATCCTTAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTTAAT
*
60534120 CGGTGGATCCA-TAGTCGTCAAGCAACCATGCGATCCTTAAT
1 CGGTGGATCCACGA-TCGTCAAGCAACCATGCGATCCTTAAT
60534161 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCT
1 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCT
60534198 CAATTTCTTC
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
40 1 0.01
41 70 0.97
42 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (41 bp):
CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTTAAT
Found at i:60534481 original size:27 final size:27
Alignment explanation
Indices: 60534451--60534509 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
60534441 AGGGTGTTTT
60534451 GGTAAATCTACAAACCAA-GGTTATTTC
1 GGTAAATCTACAAACCAATGG-TATTTC
* * *
60534478 GGTAATTTTGCAAACCAATGGTATTTC
1 GGTAAATCTACAAACCAATGGTATTTC
*
60534505 TGTAA
1 GGTAA
60534510 TTTTTTGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (27 bp):
GGTAAATCTACAAACCAATGGTATTTC
Found at i:60534611 original size:27 final size:26
Alignment explanation
Indices: 60534459--60534775 Score: 192
Period size: 27 Copynumber: 11.7 Consensus size: 26
60534449 TTGGTAAATC
* * *
60534459 TACAAACCAAGGTTATTTCGGTAATTT
1 TACAAATCAAGGGTA-TTCTGTAATTT
* * *
60534486 TGCAAACCAATGGTATTTCTGTAATTTT
1 TACAAATCAAGGGTA-TTCTGTAA-TTT
**
60534514 TTGAAAGTCAAGGGTATTTCTGTAATTT
1 TACAAA-TCAAGGGTA-TTCTGTAATTT
** * *
60534542 TGTAAAT-TAGGGATACTCTTGTAATTT
1 TACAAATCAAGGG-TATTC-TGTAATTT
** *
60534569 TGTAAATTAAGGGTATTCCTGTAATTT
1 TACAAATCAAGGGTATT-CTGTAATTT
* *
60534596 TATAAATCAAGGGTATTTTGATAATTT
1 TACAAATCAAGGGTATTCTG-TAATTT
**
60534623 TACAAATTGAGGGTATT-TCGATAATTT
1 TACAAATCAAGGGTATTCT-G-TAATTT
*
60534650 TACAAATCGAGGGTATT-TCGATAATTT
1 TACAAATCAAGGGTATTCT-G-TAATTT
* * *
60534677 CACAAATAAAGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTCT-GTAATTT
* *
60534704 TACAAA-CCAGGGATATTTTGGTAATTT
1 TACAAATCAAGGG-TATTCT-GTAATTT
* *
60534731 TACAAATTAAGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTCT-GTAATTT
* *
60534758 TACAAATCGAGGGCATTC
1 TACAAATCAAGGGTATTC
60534776 AATAATTCTA
Statistics
Matches: 245, Mismatches: 34, Indels: 22
0.81 0.11 0.07
Matches are distributed among these distances:
26 13 0.05
27 191 0.78
28 25 0.10
29 16 0.07
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.40
Consensus pattern (26 bp):
TACAAATCAAGGGTATTCTGTAATTT
Found at i:60534621 original size:54 final size:52
Alignment explanation
Indices: 60534479--60534770 Score: 230
Period size: 54 Copynumber: 5.4 Consensus size: 52
60534469 GGTTATTTCG
* * * ** *
60534479 GTAATTTTGCAAACCAATGGTATTTCTGTAATTTTTTGAAAGTCAAGGGTATTTCT
1 GTAATTTTACAAATCAAGGGTATTT-TGTAA-TTTTACAAA-TTAAGGGTA-TTCT
** * * **
60534535 GTAATTTTGTAAAT-TAGGGATACTCTTGTAATTTTGTAAATTAAGGGTATTCCT
1 GTAATTTTACAAATCAAGGG-TA-TTTTGTAATTTTACAAATTAAGGGTATT-CT
* *
60534589 GTAATTTTATAAATCAAGGGTATTTTGATAATTTTACAAATTGAGGGTATT-T
1 GTAATTTTACAAATCAAGGGTATTTTG-TAATTTTACAAATTAAGGGTATTCT
* * * * *
60534641 CGATAATTTTACAAATCGAGGGTATTTCGATAATTTCACAAATAAAGGGTATTTT
1 -G-TAATTTTACAAATCAAGGGTATTTTG-TAATTTTACAAATTAAGGGTATTCT
* *
60534696 GGTAATTTTACAAA-CCAGGGATATTTTGGTAATTTTACAAATTAAGGGTATTTT
1 -GTAATTTTACAAATCAAGGG-TATTTT-GTAATTTTACAAATTAAGGGTATTCT
*
60534750 GGTAATTTTACAAATCGAGGG
1 -GTAATTTTACAAATCAAGGG
60534771 CATTCAATAA
Statistics
Matches: 199, Mismatches: 26, Indels: 23
0.80 0.10 0.09
Matches are distributed among these distances:
52 1 0.01
53 12 0.06
54 143 0.72
55 22 0.11
56 19 0.10
57 2 0.01
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.41
Consensus pattern (52 bp):
GTAATTTTACAAATCAAGGGTATTTTGTAATTTTACAAATTAAGGGTATTCT
Found at i:60534648 original size:81 final size:80
Alignment explanation
Indices: 60534472--60534770 Score: 284
Period size: 81 Copynumber: 3.7 Consensus size: 80
60534462 AAACCAAGGT
* * * **
60534472 TATTTCGGTAATTTTGCAAACCAATGGTATTTCTGTAATTTTTTGAAAGTCAAGGGTATTTCTGT
1 TATTTCGGTAATTTTACAAATCAAGGGTATTTCTGTAA-TTTTACAAA-TCAAGGGTATTT-TGT
**
60534537 AATTTTGTAAATTAGGGA
63 AATTTTACAAATTAGGGA
** * * *
60534555 TACTCTT--GTAATTTTGTAAATTAAGGGTATTCCTGTAATTTTATAAATCAAGGGTATTTTGAT
1 TA-T-TTCGGTAATTTTACAAATCAAGGGTATTTCTGTAATTTTACAAATCAAGGGTATTTTG-T
60534618 AATTTTACAAATTGAGGG-
63 AATTTTACAAATT-AGGGA
* * * *
60534636 TATTTCGATAATTTTACAAATCGAGGGTATTTC-GATAATTTCACAAATAAAGGGTATTTTGGTA
1 TATTTCGGTAATTTTACAAATCAAGGGTATTTCTG-TAATTTTACAAATCAAGGGTATTTT-GTA
**
60534700 ATTTTACAAACCAGGGA
64 ATTTTACAAATTAGGGA
* * *
60534717 TATTTTGGTAATTTTACAAATTAAGGGTATTT-TGGTAATTTTACAAATCGAGGG
1 TATTTCGGTAATTTTACAAATCAAGGGTATTTCT-GTAATTTTACAAATCAAGGG
60534771 CATTCAATAA
Statistics
Matches: 178, Mismatches: 27, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
79 2 0.01
80 8 0.04
81 124 0.70
82 13 0.07
83 28 0.16
84 1 0.01
85 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.41
Consensus pattern (80 bp):
TATTTCGGTAATTTTACAAATCAAGGGTATTTCTGTAATTTTACAAATCAAGGGTATTTTGTAAT
TTTACAAATTAGGGA
Found at i:60534808 original size:27 final size:27
Alignment explanation
Indices: 60534767--60534844 Score: 122
Period size: 27 Copynumber: 2.9 Consensus size: 27
60534757 TTACAAATCG
*
60534767 AGGGCA-TTCAATAATTCTACCCTACA
1 AGGGCATTTCAGTAATTCTACCCTACA
*
60534793 AGGGTATTTCAGTAATTCTACCCTACA
1 AGGGCATTTCAGTAATTCTACCCTACA
*
60534820 GGGGCATTTCAGTAATTCTACCCTA
1 AGGGCATTTCAGTAATTCTACCCTA
60534845 TAGATATGAG
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 5 0.11
27 42 0.89
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.31
Consensus pattern (27 bp):
AGGGCATTTCAGTAATTCTACCCTACA
Found at i:60537846 original size:22 final size:22
Alignment explanation
Indices: 60537810--60537874 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
60537800 GTAAATACGT
* *
60537810 TTGGCACACATCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
60537832 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
* *
60537854 TTAGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
60537875 AATAATTGGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:60537953 original size:32 final size:33
Alignment explanation
Indices: 60537910--60537976 Score: 100
Period size: 32 Copynumber: 2.1 Consensus size: 33
60537900 ACTGTGTCAT
*
60537910 GTTAGGCACATAGCCACCAGTGACAGTAATATA
1 GTTAGGCACATAGCCACCAGCGACAGTAATATA
**
60537943 GTTAGG-ACATAGCCACCAGCGATGGTAATATA
1 GTTAGGCACATAGCCACCAGCGACAGTAATATA
60537975 GT
1 GT
60537977 CGGCACACAG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
32 25 0.81
33 6 0.19
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.22
Consensus pattern (33 bp):
GTTAGGCACATAGCCACCAGCGACAGTAATATA
Found at i:60538110 original size:41 final size:40
Alignment explanation
Indices: 60538046--60538170 Score: 187
Period size: 41 Copynumber: 3.0 Consensus size: 40
60538036 CTTAAAAGCC
* * *
60538046 ATCGGTGGATCCACGATCGTCAAGCAACCATGTGATCCTTA
1 ATCGGTGGATCCACG-TCATCAAGCAACCATGCGATCCTCA
60538087 ATCGGTGGATCCACAGTCATCAAGCAACCATGCGATCCTCA
1 ATCGGTGGATCCAC-GTCATCAAGCAACCATGCGATCCTCA
*
60538128 ATCGGTGGATCCAGGGTCATCAAGCAACCATGCGATCCTCA
1 ATCGGTGGATCCA-CGTCATCAAGCAACCATGCGATCCTCA
60538169 AT
1 AT
60538171 TTCTTCCTNN
Statistics
Matches: 78, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
41 77 0.99
42 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
ATCGGTGGATCCACGTCATCAAGCAACCATGCGATCCTCA
Found at i:60549282 original size:20 final size:20
Alignment explanation
Indices: 60549245--60549282 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
60549235 TGAATTAAAA
*
60549245 TCTTAAAATATGATAACTAG
1 TCTTAAAATATGAGAACTAG
60549265 TCTTAAACATAT-AGAACT
1 TCTTAAA-ATATGAGAACT
60549283 TTTCCATGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.45, C:0.13, G:0.08, T:0.34
Consensus pattern (20 bp):
TCTTAAAATATGAGAACTAG
Found at i:60551435 original size:30 final size:30
Alignment explanation
Indices: 60551401--60551461 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
60551391 TTCTCGAGAC
60551401 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
60551431 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
60551461 T
1 T
60551462 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:60562840 original size:12 final size:12
Alignment explanation
Indices: 60562823--60562854 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
60562813 TACTTTACCC
60562823 AATTTCTTCAAT
1 AATTTCTTCAAT
60562835 AATTTCTTCAAT
1 AATTTCTTCAAT
60562847 AATTTCTT
1 AATTTCTT
60562855 TTTCTAACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.31, C:0.16, G:0.00, T:0.53
Consensus pattern (12 bp):
AATTTCTTCAAT
Found at i:60565113 original size:19 final size:19
Alignment explanation
Indices: 60565071--60565126 Score: 82
Period size: 19 Copynumber: 3.1 Consensus size: 19
60565061 TTCTTCATAA
60565071 GTATATATCAATCATTTCA-
1 GTATATATCAAT-ATTTCAT
60565090 -T-TATATCAATATTTCAT
1 GTATATATCAATATTTCAT
60565107 GTATATATCAATATTTCAT
1 GTATATATCAATATTTCAT
60565126 G
1 G
60565127 CTCCATCATT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
16 6 0.18
17 9 0.26
18 2 0.06
19 17 0.50
ACGTcount: A:0.36, C:0.12, G:0.05, T:0.46
Consensus pattern (19 bp):
GTATATATCAATATTTCAT
Found at i:60565471 original size:46 final size:46
Alignment explanation
Indices: 60565421--60565776 Score: 466
Period size: 46 Copynumber: 7.7 Consensus size: 46
60565411 TGCCATACTG
* * *
60565421 TCTTTCAACTATGGTCTTACTCATATTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCAT-TTCATATCAGGTTGCCATGGTA
* * * * *
60565467 TCTTTCAACCATGGTCTTATTCATTTTATGTCACGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTA
* *** *
60565513 TCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTA
* * **
60565559 TCTTTCAACCATGGTCTTATTCGTTTCATATCACATTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTA
*
60565605 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTA
* *
60565651 TCTTTCAACGATGGTCTTA-TACATTTCATATTAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACT-CATTTCATATCAGGTTGCCATGGTA
*
60565697 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTA
*
60565743 TCTTTCAACCATGGTCTTACAT-ATTTCGTATCAG
1 TCTTTCAACCATGGTCTTAC-TCATTTCATATCAG
60565777 AGAGCACACT
Statistics
Matches: 277, Mismatches: 29, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
45 2 0.01
46 275 0.99
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTA
Found at i:60567539 original size:14 final size:13
Alignment explanation
Indices: 60567514--60567547 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
60567504 CCTTTTATAC
60567514 TAAATAAATAATAA
1 TAAAT-AATAATAA
60567528 TATAATAATAATAA
1 TA-AATAATAATAA
60567542 TAAATA
1 TAAATA
60567548 TCTCATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.21
14 12 0.63
15 3 0.16
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
TAAATAATAATAA
Found at i:60570032 original size:19 final size:20
Alignment explanation
Indices: 60570001--60570052 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
60569991 ATTAATTTCG
* *
60570001 TGAAATTCAATGCATATG-A
1 TGAAATGCAATGCAGATGCA
*
60570020 TGACATGCAATGCAGATGCA
1 TGAAATGCAATGCAGATGCA
60570040 TGAAATG-AATGCA
1 TGAAATGCAATGCA
60570053 AAAAGAGGCA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 21 0.75
20 7 0.25
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.25
Consensus pattern (20 bp):
TGAAATGCAATGCAGATGCA
Found at i:60571570 original size:15 final size:15
Alignment explanation
Indices: 60571550--60571579 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
60571540 GGTTTCACTC
*
60571550 CCCAAAAACCTAAAA
1 CCCAAAAACCCAAAA
60571565 CCCAAAAACCCAAAA
1 CCCAAAAACCCAAAA
60571580 ACATAAAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.60, C:0.37, G:0.00, T:0.03
Consensus pattern (15 bp):
CCCAAAAACCCAAAA
Found at i:60581082 original size:23 final size:23
Alignment explanation
Indices: 60581055--60581101 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
60581045 CAAACATTTC
* *
60581055 AACTACTCAATTCTATAT-TCAAA
1 AACTAC-CAAATCAATATGTCAAA
60581078 AACTACCAAATCAATATGTCAAA
1 AACTACCAAATCAATATGTCAAA
60581101 A
1 A
60581102 TCATCAAGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.49, C:0.21, G:0.02, T:0.28
Consensus pattern (23 bp):
AACTACCAAATCAATATGTCAAA
Found at i:60581921 original size:43 final size:43
Alignment explanation
Indices: 60581873--60581974 Score: 125
Period size: 43 Copynumber: 2.4 Consensus size: 43
60581863 TCCAAGATAT
* * * *
60581873 GGTCTTACATGTTATCACA-TATCGACGCCATTGTCCCAGGCAG
1 GGTCTTACACGTAATCA-ATTAACGACGCCAATGTCCCAGGCAG
* * *
60581916 GGTCTTACACGTAATCAATTAACGATGTCAATGTCCCAGGCAT
1 GGTCTTACACGTAATCAATTAACGACGCCAATGTCCCAGGCAG
60581959 GGTCTTACACGTAATC
1 GGTCTTACACGTAATC
60581975 TCATCTTGGT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 1 0.02
43 50 0.98
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (43 bp):
GGTCTTACACGTAATCAATTAACGACGCCAATGTCCCAGGCAG
Found at i:60585552 original size:19 final size:19
Alignment explanation
Indices: 60585509--60585558 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
60585499 TATTGTACAC
60585509 TATA-AAAATTTT-AAAAT
1 TATATAAAATTTTAAAAAT
* *
60585526 TGTGTAAAATTTTAAAAAT
1 TATATAAAATTTTAAAAAT
*
60585545 TATATAAAAATTTA
1 TATATAAAATTTTA
60585559 TTATAAATTA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 2 0.08
18 8 0.31
19 16 0.62
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (19 bp):
TATATAAAATTTTAAAAAT
Found at i:60586678 original size:21 final size:22
Alignment explanation
Indices: 60586645--60586688 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
60586635 ATAATAAAAA
60586645 TAATGTTAATAAAAT-ATTTTT
1 TAATGTTAATAAAATGATTTTT
*
60586666 TAAT-TTAATTAAATTGATTTTT
1 TAATGTTAA-TAAAATGATTTTT
60586688 T
1 T
60586689 GTTTATACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 9 0.45
22 7 0.35
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (22 bp):
TAATGTTAATAAAATGATTTTT
Found at i:60602298 original size:30 final size:32
Alignment explanation
Indices: 60602258--60602323 Score: 84
Period size: 30 Copynumber: 2.1 Consensus size: 32
60602248 AATAATTTAT
*
60602258 TTTTCTATAATTTTTAAAA-AATTAAATTA-AA
1 TTTTCTATAA-TTTTAAAAGAATTAAAATATAA
*
60602289 TTTT-TATAATTTTAAAAGGATTAAAATATAA
1 TTTTCTATAATTTTAAAAGAATTAAAATATAA
60602320 TTTT
1 TTTT
60602324 ATCTTTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 8 0.26
30 13 0.42
31 10 0.32
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (32 bp):
TTTTCTATAATTTTAAAAGAATTAAAATATAA
Found at i:60604254 original size:24 final size:24
Alignment explanation
Indices: 60604225--60604272 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
60604215 TGATTTAAAT
60604225 GATAAAATTGAAAGTTTAAACATA
1 GATAAAATTGAAAGTTTAAACATA
60604249 GATAAAATTGAAAGTTTAAACATA
1 GATAAAATTGAAAGTTTAAACATA
60604273 ATGGTTCAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.04, G:0.12, T:0.29
Consensus pattern (24 bp):
GATAAAATTGAAAGTTTAAACATA
Found at i:60609353 original size:29 final size:29
Alignment explanation
Indices: 60609314--60609392 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
60609304 CTTAAAAATC
*
60609314 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
60609344 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
60609373 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
60609393 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:60612343 original size:30 final size:30
Alignment explanation
Indices: 60612309--60612365 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
60612299 TTTACGAGCC
* *
60612309 TAGGGGCAAAAGTATAATTTTGACAAAGTT
1 TAGGGACAAAAATATAATTTTGACAAAGTT
*
60612339 TAGGGACAAAAATATAATTTTGCCAAA
1 TAGGGACAAAAATATAATTTTGACAAA
60612366 ATATGATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.44, C:0.09, G:0.19, T:0.28
Consensus pattern (30 bp):
TAGGGACAAAAATATAATTTTGACAAAGTT
Found at i:60626135 original size:40 final size:40
Alignment explanation
Indices: 60626071--60626321 Score: 301
Period size: 40 Copynumber: 6.3 Consensus size: 40
60626061 TCTTCGGAAT
* * *
60626071 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTC
* *
60626110 TTAGCCCGGATATATCAACTCGCACAAATGCCTTTGGGTC
1 TTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTC
* *
60626150 TTAGCCCGGATAAAATC-ACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCAACTAGCACAAATGCCTTCGGGTC
* * * * *
60626190 TTAACCCGGGTATAGCAATTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTC
* *
60626230 TTAGCCCGGATAAATC-ACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTC
* * ** *
60626269 TTAACCCGGGTATAGAAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTC
60626309 TTAGCCCGGATAT
1 TTAGCCCGGATAT
60626322 CATTCAAATG
Statistics
Matches: 176, Mismatches: 32, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
39 38 0.22
40 134 0.76
41 4 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTC
Found at i:60626215 original size:80 final size:80
Alignment explanation
Indices: 60626071--60626320 Score: 387
Period size: 79 Copynumber: 3.1 Consensus size: 80
60626061 TCTTCGGAAT
* * * * * * *
60626071 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
*
60626135 AAATGCCTTTGGGTC
66 AAATGCCTTCGGGTC
* *
60626150 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTTGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
60626215 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
*
60626230 TTAGCCCGGAT-AAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGAAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
60626294 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
60626309 TTAGCCCGGATA
1 TTAGCCCGGATA
60626321 TCATTCAAAT
Statistics
Matches: 156, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
79 80 0.51
80 76 0.49
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:60634454 original size:38 final size:39
Alignment explanation
Indices: 60634403--60634584 Score: 227
Period size: 38 Copynumber: 4.8 Consensus size: 39
60634393 ATTTGAATGA
60634403 TATCCGGGCTAAGACCCGAAGGCA-TTGTGCGAGTGATT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
60634441 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* *
60634481 TACCCGGGTTAAGACCCGAAGGCA-TTGTGC-A--GATTCT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGA-T-T
* * *
60634518 TATCC-GGTTAAGA-CCGAAGGCATTTGTGCGAGTTA-C
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
60634554 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
60634585 TTGTGGTTAT
Statistics
Matches: 126, Mismatches: 8, Indels: 20
0.82 0.05 0.13
Matches are distributed among these distances:
35 10 0.08
36 20 0.16
37 13 0.10
38 41 0.33
39 16 0.13
40 26 0.21
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:60643151 original size:25 final size:24
Alignment explanation
Indices: 60643113--60643165 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 24
60643103 ATGTTCAAGC
*
60643113 GAGCCATATTAGGAAACTCACAAA
1 GAGCCATATCAGGAAACTCACAAA
** *
60643137 GAGCCTATATCAGGATGCTCATAAA
1 GAGCC-ATATCAGGAAACTCACAAA
60643162 GAGC
1 GAGC
60643166 TGCGTTTGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.19
Consensus pattern (24 bp):
GAGCCATATCAGGAAACTCACAAA
Found at i:60644508 original size:38 final size:38
Alignment explanation
Indices: 60644463--60644539 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
60644453 TTTCCTATCA
60644463 TGATGCAGACCATGTAAAAATTTTAAAATAATTTTTTT
1 TGATGCAGACCATGTAAAAATTTTAAAATAATTTTTTT
60644501 TGATGCAGACCATGTAAAAATTTTAAAATAATTTTTTT
1 TGATGCAGACCATGTAAAAATTTTAAAATAATTTTTTT
60644539 T
1 T
60644540 CTAACTCGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (38 bp):
TGATGCAGACCATGTAAAAATTTTAAAATAATTTTTTT
Found at i:60645662 original size:54 final size:54
Alignment explanation
Indices: 60645559--60645713 Score: 157
Period size: 54 Copynumber: 2.9 Consensus size: 54
60645549 TGGCCTAAGG
* * * * *
60645559 CACGGTCGTGTGGATCAAGTCAGAGAGTTACACGGTTTAGTACATGGCCTGTGA
1 CACGGCCGTGTGAAACAAGTCAGAGAGTTACACGGTTTAGCACACGGCCTGTGA
* * **
60645613 CACGGCCGTGTGAAACAAGTTAGAGAGTTACACGGTTTGGCACACGGCCTACGA
1 CACGGCCGTGTGAAACAAGTCAGAGAGTTACACGGTTTAGCACACGGCCTGTGA
* ** ** * * *
60645667 CATGGCTATGTGACCCAAGTCAGTGAGTTACATGGTTTAGGACACGG
1 CACGGCCGTGTGAAACAAGTCAGAGAGTTACACGGTTTAGCACACGG
60645714 TTTGAGACAT
Statistics
Matches: 82, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 82 1.00
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (54 bp):
CACGGCCGTGTGAAACAAGTCAGAGAGTTACACGGTTTAGCACACGGCCTGTGA
Found at i:60652959 original size:3 final size:3
Alignment explanation
Indices: 60652951--60653016 Score: 109
Period size: 3 Copynumber: 22.7 Consensus size: 3
60652941 TACTGCCATG
*
60652951 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA AAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
60652999 G-A GAA GAA G-A GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GA
60653017 GGAGGGTGGC
Statistics
Matches: 59, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
2 4 0.07
3 55 0.93
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:60653541 original size:32 final size:32
Alignment explanation
Indices: 60653502--60653562 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
60653492 TTATATGTAT
60653502 TGTTATTTTAAAAGTCGGTATAATTTTTTTTA
1 TGTTATTTTAAAAGTCGGTATAATTTTTTTTA
* *
60653534 TGTTATTTTAAAAGTTGTTATAATTTTTT
1 TGTTATTTTAAAAGTCGGTATAATTTTTT
60653563 AACTCATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.28, C:0.02, G:0.11, T:0.59
Consensus pattern (32 bp):
TGTTATTTTAAAAGTCGGTATAATTTTTTTTA
Found at i:60653823 original size:21 final size:21
Alignment explanation
Indices: 60653778--60653825 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
60653768 TTTTTACTTC
*
60653778 AATAAA-CATTAAAAATAAAT
1 AATAAATCAATAAAAATAAAT
*
60653798 TATAAATCAATAAAAATATAA-
1 AATAAATCAATAAAAATA-AAT
60653819 AATAAAT
1 AATAAAT
60653826 ACAAACATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 5 0.22
21 16 0.70
22 2 0.09
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (21 bp):
AATAAATCAATAAAAATAAAT
Found at i:60663182 original size:44 final size:43
Alignment explanation
Indices: 60663046--60663196 Score: 148
Period size: 42 Copynumber: 3.5 Consensus size: 43
60663036 CAATGCCATC
* * *
60663046 GTCCCAGACGTGGTCTTACATGT-AATTCAATATCGATGCCTCT
1 GTCCCAGACATGGTCTTACACGTAAATTCAA-ATCGATGCCTGT
* * * * *
60663089 ATCCTAGACAGGGTCTTACATG-AAA-TCAGATACGATGCC-GAT
1 GTCCCAGACATGGTCTTACACGTAAATTCAAAT-CGATGCCTG-T
*
60663131 GTCCCAGACATGGTCTTACACGTAAATCTCAAATCGAAGCCTGT
1 GTCCCAGACATGGTCTTACACGTAAAT-TCAAATCGATGCCTGT
*
60663175 GTCCCAGACACGGTCTTACACG
1 GTCCCAGACATGGTCTTACACG
60663197 ATATTTCAGA
Statistics
Matches: 88, Mismatches: 13, Indels: 13
0.77 0.11 0.11
Matches are distributed among these distances:
41 2 0.02
42 29 0.33
43 23 0.26
44 28 0.32
45 6 0.07
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGTAAATTCAAATCGATGCCTGT
Found at i:60669186 original size:29 final size:29
Alignment explanation
Indices: 60669123--60669190 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
60669113 TAATCAACCG
*
60669123 CGCACACTTAGTGCCATATACTTTAAACT
1 CGCACACTTAGTGCCATACACTTTAAACT
* * **
60669152 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATACACTTT-AAACT
60669181 CGCACACTTA
1 CGCACACTTA
60669191 CCTTTTCCGC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
28 3 0.09
29 29 0.91
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACACTTTAAACT
Found at i:60669360 original size:29 final size:29
Alignment explanation
Indices: 60669297--60669364 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
60669287 TAATCAACCG
60669297 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
60669326 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
60669355 CGCACACTTA
1 CGCACACTTA
60669365 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:60669505 original size:29 final size:30
Alignment explanation
Indices: 60669466--60669544 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
60669456 CTTAATAATC
60669466 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
60669496 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
60669525 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
60669545 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:60669538 original size:174 final size:174
Alignment explanation
Indices: 60669012--60669513 Score: 959
Period size: 174 Copynumber: 2.9 Consensus size: 174
60669002 AACTCAAGGT
* *
60669012 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
60669077 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATAT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
60669142 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
60669186 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
60669251 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
60669316 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
60669360 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
60669425 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
*
60669490 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
60669514 TGTACAATTT
Statistics
Matches: 322, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 322 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:60676714 original size:27 final size:27
Alignment explanation
Indices: 60676657--60676708 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
60676647 GGGCTGTTAC
*
60676657 AATTCTACCCTATAGGGGTATTTCAAA
1 AATTCTACCCTACAGGGGTATTTCAAA
60676684 AATTCTACCCTACAGGGGTATTTCA
1 AATTCTACCCTACAGGGGTATTTCA
60676709 GTAATTTCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (27 bp):
AATTCTACCCTACAGGGGTATTTCAAA
Found at i:60676756 original size:27 final size:27
Alignment explanation
Indices: 60676726--60677128 Score: 448
Period size: 27 Copynumber: 15.1 Consensus size: 27
60676716 CACAATCAAA
*
60676726 GGTAAAATGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* **
60676753 GGTAAAACGGTAATTTTACAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
** *
60676780 GGTAAAATAGTAATTCTATAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
** *
60676807 GGTAAAATAGTAATTCTGTAAATTGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* * *
60676834 GGCAAAACAGTAATTCTGTAAATTGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
60676861 GGTAAAACGGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
60676888 GGT-AAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* * **
60676914 GGTAAAATGGTAATTTTAAAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* *
60676941 GGTAAAACGAT-ATTCTGTAAA-CTGGG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
60676967 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
** * * *
60676994 GGTAAAACAATAATTCTATACATTGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* *
60677021 GGT-AAACAGTAATTCTGTAAA-CTGAC
1 GGTAAAACGGTAATTCTGTAAATC-GAG
*
60677047 GGT-AAACAGTAATT-TGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
60677072 GGTAAAACGGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
*
60677099 GGTAAAACGGTAATTCTGT-AATCGAT
1 GGTAAAACGGTAATTCTGTAAATCGAG
60677125 GGTA
1 GGTA
60677129 CTTTGGTAAT
Statistics
Matches: 324, Mismatches: 40, Indels: 25
0.83 0.10 0.06
Matches are distributed among these distances:
25 12 0.04
26 94 0.29
27 217 0.67
28 1 0.00
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.28
Consensus pattern (27 bp):
GGTAAAACGGTAATTCTGTAAATCGAG
Found at i:60676942 original size:80 final size:81
Alignment explanation
Indices: 60676726--60677119 Score: 462
Period size: 80 Copynumber: 4.9 Consensus size: 81
60676716 CACAATCAAA
* * **
60676726 GGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAATAGT
1 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACGGT
*
60676791 AATTCTATAAA-TCGAG
66 AATTCTGTAAACT-GAG
** * * * * ** *
60676807 GGTAAAATAGTAATTCTGTAAATTGAGGGCAAAACAGTAATTCTGTAAATTGAGGGTAAAACGGT
1 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACGGT
60676872 AATTCTGTAAACTGAG
66 AATTCTGTAAACTGAG
* *
60676888 GGT-AAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTAAAAATCGAGGGTAAAACGAT
1 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACGGT
*
60676952 -ATTCTGTAAACTGGG
66 AATTCTGTAAACTGAG
** * * * * *
60676967 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAATAATTCTATACATTGAGGGT-AAACAGT
1 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACGGT
*
60677031 AATTCTGTAAACTGAC
66 AATTCTGTAAACTGAG
* *
60677047 GGT-AAACAGTAATT-TGTAAATCGAGGGTAAAACGGTAATTCTGT-AAACT-GAGGGTAAAACG
1 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATT-T-TAAAAATCGAGGGTAAAACG
60677108 GTAATTCTGTAA
64 GTAATTCTGTAA
60677120 TCGATGGTAC
Statistics
Matches: 265, Mismatches: 42, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
78 30 0.11
79 50 0.19
80 113 0.43
81 71 0.27
82 1 0.00
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.28
Consensus pattern (81 bp):
GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACGGT
AATTCTGTAAACTGAG
Found at i:60677139 original size:53 final size:54
Alignment explanation
Indices: 60676726--60677128 Score: 454
Period size: 53 Copynumber: 7.6 Consensus size: 54
60676716 CACAATCAAA
** *
60676726 GGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGGTAATT-T-TACAAATCGAG
1 GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTA-AACT-GAG
* * ** *
60676780 GGTAAAATAGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAATTGAG
1 GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAG
* *
60676834 GGCAAAACAGTAATTCTGTAAATTGAGGGTAAAACGGTAATTCTGTAAACTGAG
1 GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAG
* * *
60676888 GGT-AAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATT-T-TAAAAATCGAG
1 GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGT-AAACT-GAG
*
60676941 GGTAAAAC-G-ATATTCTGTAAA-CTGGGGGTAAAACGGTAATTCTGTAAA-TCGAG
1 GGTAAAACAGTA-ATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAACT-GAG
* * * * * *
60676994 GGTAAAACAATAATTCTATACATTGAGGGT-AAACAGTAATTCTGTAAACTGAC
1 GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAG
60677047 GGT-AAACAGTAATT-TGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAG
1 GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAG
* *
60677099 GGTAAAACGGTAATTCTGT-AATCGATGGTA
1 GGTAAAACAGTAATTCTGTAAATCGAGGGTA
60677129 CTTTGGTAAT
Statistics
Matches: 299, Mismatches: 34, Indels: 33
0.82 0.09 0.09
Matches are distributed among these distances:
51 12 0.04
52 41 0.14
53 123 0.41
54 115 0.38
55 6 0.02
56 2 0.01
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.28
Consensus pattern (54 bp):
GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAG
Found at i:60678874 original size:6 final size:6
Alignment explanation
Indices: 60678848--60678973 Score: 118
Period size: 6 Copynumber: 20.8 Consensus size: 6
60678838 AACCAAAATG
* *
60678848 AGAATC AAAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC
*
60678896 AGAATC AGAATC AGAATC AGTAA-C AGAACC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
* *
60678944 AGAATT AG-GTGAC AGAATC AGAATC AGAAT
1 AGAATC AGAAT--C AGAATC AGAATC AGAAT
60678974 GTGAATGCAA
Statistics
Matches: 100, Mismatches: 9, Indels: 22
0.76 0.07 0.17
Matches are distributed among these distances:
5 8 0.08
6 83 0.83
7 7 0.07
8 2 0.02
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:60678882 original size:30 final size:30
Alignment explanation
Indices: 60678848--60678973 Score: 157
Period size: 30 Copynumber: 4.2 Consensus size: 30
60678838 AACCAAAATG
60678848 AGAATCAAAATCAGTAACAGAATCAGAATC
1 AGAATCAAAATCAGTAACAGAATCAGAATC
* *
60678878 AGAATCAATATTAGTAACAGAATCAGAATC
1 AGAATCAAAATCAGTAACAGAATCAGAATC
*
60678908 AGAATCAGTAA-CAG-AACCAGAATCAGAATC
1 AGAATCA-AAATCAGTAA-CAGAATCAGAATC
* * *
60678938 AGAATCAGAATTAGGTGACAGAATCAGAATC
1 AGAATCAAAATCA-GTAACAGAATCAGAATC
60678969 AGAAT
1 AGAAT
60678974 GTGAATGCAA
Statistics
Matches: 83, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
29 4 0.05
30 58 0.70
31 20 0.24
32 1 0.01
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.18
Consensus pattern (30 bp):
AGAATCAAAATCAGTAACAGAATCAGAATC
Found at i:60679127 original size:27 final size:26
Alignment explanation
Indices: 60679090--60679148 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
60679080 AGCATGGCTG
*
60679090 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
60679116 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
60679143 CCAGAA
1 CCAGAA
60679149 TCAGGTAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 6 0.21
27 23 0.79
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:60679160 original size:27 final size:27
Alignment explanation
Indices: 60679090--60679172 Score: 73
Period size: 27 Copynumber: 3.1 Consensus size: 27
60679080 AGCATGGCTG
* *
60679090 CCAGA-ACAGAT-ATCGTGACAGAGTCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
60679116 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGATACAGATAATGTGGCAGAGCCA
* * *
60679143 CCAGA-ATCAGGTAATGTGGCAAACCCA
1 CCAGATA-CAGATAATGTGGCAGAGCCA
60679170 CCA
1 CCA
60679173 ACAGAATACG
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
26 6 0.13
27 40 0.85
28 1 0.02
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:60679531 original size:26 final size:26
Alignment explanation
Indices: 60679467--60679549 Score: 105
Period size: 27 Copynumber: 3.2 Consensus size: 26
60679457 TCGATCTGTC
* * *
60679467 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
60679493 ATACAGATATTGTGGCAGAG-CACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
60679519 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
60679546 AACA
1 AACA
60679550 CTTCTTCCGT
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
25 7 0.14
26 17 0.33
27 27 0.53
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:60679765 original size:26 final size:27
Alignment explanation
Indices: 60679704--60679765 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 27
60679694 CAGTCACTTG
*
60679704 CCCACAAGGGCAAAACAGTCATTTAAC
1 CCCACAAGGGCAAAACAGTAATTTAAC
* * * *
60679731 ACC-CTAGGGCAAAA-TGTAATTTTAC
1 CCCACAAGGGCAAAACAGTAATTTAAC
60679756 CCCACAAGGG
1 CCCACAAGGG
60679766 TATCTCGATA
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
25 10 0.37
26 15 0.56
27 2 0.07
ACGTcount: A:0.37, C:0.27, G:0.18, T:0.18
Consensus pattern (27 bp):
CCCACAAGGGCAAAACAGTAATTTAAC
Found at i:60679939 original size:27 final size:27
Alignment explanation
Indices: 60679746--60679939 Score: 201
Period size: 27 Copynumber: 7.2 Consensus size: 27
60679736 AGGGCAAAAT
* * *
60679746 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* * * *
60679773 ATAATTCTACCCTATAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCG
*
60679800 GTATTTCTA-CCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* * *
60679826 ATAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCG
* * *
60679853 GTAATTCTATCCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCG
* * * *
60679880 GTAATTCTACCTTATAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCG
* *
60679907 GAAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCG
60679934 GTAATT
1 GTAATT
60679940 TCACAATCAA
Statistics
Matches: 132, Mismatches: 34, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
26 21 0.16
27 111 0.84
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.38
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCG
Found at i:60679939 original size:54 final size:54
Alignment explanation
Indices: 60679746--60679932 Score: 270
Period size: 54 Copynumber: 3.5 Consensus size: 54
60679736 AGGGCAAAAT
* * *
60679746 GTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTATAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTATAGGGGTATTTTG
* *
60679800 GTATTTCTA-CCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTATAGGGGTATTTTG
* * *
60679853 GTAATTCTATCCTATAAGGGTATTTC-AGTAATTCTACCTTATAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCGA-TAATTCTACCCTATAGGGGTATTTTG
*
60679907 GAAATTCTACCCTACAAGGGTATTTC
1 GTAATTCTACCCTACAAGGGTATTTC
60679933 AGTAATTTCA
Statistics
Matches: 119, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
53 50 0.42
54 69 0.58
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.37
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTATAGGGGTATTTTG
Found at i:60679980 original size:27 final size:27
Alignment explanation
Indices: 60679944--60680350 Score: 402
Period size: 27 Copynumber: 15.3 Consensus size: 27
60679934 GTAATTTCAC
* *
60679944 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * **
60679971 AATCGAGGGT-AAATGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
60679997 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
60680024 AATCGAGGGTAAAATAGTAATTCGGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* ***
60680051 AA-CTGAGCGTAAAATAATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
60680078 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
60680105 ACT-AAGGATAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
60680131 AATCGAGGGTAAAATGGTAATT-TAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
60680157 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
60680184 AA-CTGAGGGTAAAACATTGATTC-GTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
60680210 AATCGAGGGT-AAA-TGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** * *
60680235 AATCGAGGGTAAAATAGTATTTGTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
60680262 AA-CTGAGGGTAAAATAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
60680289 AATCGAGGGTAAAACGGTAATTCCGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
60680316 AA-CTAAGGGTAAAACGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
60680343 AATCGAGG
1 AATCGAGG
60680351 TACTTGGTAA
Statistics
Matches: 316, Mismatches: 50, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
24 5 0.02
25 15 0.05
26 87 0.28
27 206 0.65
28 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:60680072 original size:54 final size:53
Alignment explanation
Indices: 60679949--60680350 Score: 408
Period size: 53 Copynumber: 7.6 Consensus size: 53
60679939 TTCACAATCA
* * *
60679949 AGGGTAAAACGGTAATTCTATAAATCGAGGGT-AAATGGTAATT-TTACAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCGTA-AACT-G
* *
60680002 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCGGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTC-GTAAACTG
* *** * *
60680056 AGCGTAAAATAATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGT-AACTA
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTC-GTAAACTG
* *
60680109 AGGATAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATT--TAAAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCGT-AAACT-G
*** *
60680162 AGGGTAAAACGGTAATTCTGTAAA-CTGAGGGTAAAACATTGATTCGTAAA-TCG
1 AGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAATGGTAATTCGTAAACT-G
* * * * *
60680215 AGGGT-AAA-TGTAATTCTATAAATCGAGGGTAAAATAGTATTTGTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATT-CGTAAACTG
** * *
60680267 AGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCCGTAAACTA
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATT-CGTAAACTG
*
60680321 AGGGTAAAACGGTAATTTTGTAAATCGAGG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGG
60680351 TACTTGGTAA
Statistics
Matches: 292, Mismatches: 43, Indels: 27
0.81 0.12 0.07
Matches are distributed among these distances:
50 1 0.00
51 26 0.09
52 19 0.07
53 123 0.42
54 117 0.40
55 4 0.01
56 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (53 bp):
AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCGTAAACTG
Found at i:60680397 original size:132 final size:131
Alignment explanation
Indices: 60679960--60680350 Score: 369
Period size: 133 Copynumber: 3.0 Consensus size: 131
60679950 GGGTAAAACG
* * * **
60679960 GTAATTCTATAAATCGAGGGT-AAATGGTAATT-T-TACAAATCGAGGGTAAAACGGTAATTCTA
1 GTAATTCTACAAATCGAGGGTAAAATAGTAATTGTGTA-AACT-GAGGGTAAAATAGTAATT-TA
* ** * * * * *
60680022 TAAATCGAGGGTAAAATAGTAATTCGGTAAACTGAGCGTAAAATAATAATTCTGTAAATCGAGGG
63 AAAATCGAGGGTAAAACGGTAATTCCGTAAACTAAGGGTAAAACAGTAATTC-GTAAATCGAGGG
*
60680087 TAAAACG
127 T-AAA-T
** * * * ** * *
60680094 GTAATTCTGTAACT-AAGGATAAAACGGTAATTCTGTAAA-TCGAGGGTAAAATGGTAATTTAAA
1 GTAATTCTACAAATCGAGGGTAAAATAGTAATTGTGTAAACT-GAGGGTAAAATAGTAATTTAAA
* * * *
60680157 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACATTGATTCGTAAATCGAGGGTAA
65 AATCGAGGGTAAAACGGTAATTCCGTAAACTAAGGGTAAAACAGTAATTCGTAAATCGAGGGTAA
60680222 AT
130 AT
* * **
60680224 GTAATTCTATAAATCGAGGGTAAAATAGTATTTGTGTAAACTGAGGGTAAAATAGTAATTCTGTA
1 GTAATTCTACAAATCGAGGGTAAAATAGTAATTGTGTAAACTGAGGGTAAAATAGTAATT-TAAA
* *
60680289 AATCGAGGGTAAAACGGTAATTCCGTAAACTAAGGGTAAAACGGTAATTTTGTAAATCGAGG
65 AATCGAGGGTAAAACGGTAATTCCGTAAACTAAGGGTAAAACAGTAA-TTCGTAAATCGAGG
60680351 TACTTGGTAA
Statistics
Matches: 218, Mismatches: 32, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
130 12 0.06
131 39 0.18
132 58 0.27
133 63 0.29
134 41 0.19
135 3 0.01
136 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (131 bp):
GTAATTCTACAAATCGAGGGTAAAATAGTAATTGTGTAAACTGAGGGTAAAATAGTAATTTAAAA
ATCGAGGGTAAAACGGTAATTCCGTAAACTAAGGGTAAAACAGTAATTCGTAAATCGAGGGTAAA
T
Found at i:60692621 original size:31 final size:32
Alignment explanation
Indices: 60692569--60692631 Score: 76
Period size: 31 Copynumber: 2.0 Consensus size: 32
60692559 TTATCTATAA
* *
60692569 AAGATATTTATTAATTTAATAT-TTATATTAT
1 AAGATATTTATTAATTAAATATATTAAATTAT
*
60692600 AAGATTTTTATGTAA-TAAATATATTAAATTAT
1 AAGATATTTAT-TAATTAAATATATTAAATTAT
60692632 GACAAGTGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (32 bp):
AAGATATTTATTAATTAAATATATTAAATTAT
Done.