Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 188 of 333
Found at i:61726130 original size:28 final size:28
Alignment explanation
Indices: 61726089--61726179 Score: 121
Period size: 28 Copynumber: 3.2 Consensus size: 28
61726079 AGGAAGCGTC
* *
61726089 CTGGTGGCTA-TGCCATAAATTATCTATT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
61726117 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
61726145 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
61726174 CTGGTG
1 CTGGTG
61726180 ACTCTGTCAC
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
28 49 0.88
29 7 0.12
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:61726672 original size:18 final size:18
Alignment explanation
Indices: 61726632--61726673 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
61726622 GTAATAAGGC
*
61726632 ATTTTAATTATTTTTATG
1 ATTTTAATTACTTTTATG
* *
61726650 GTTTTAATTACTTTTATT
1 ATTTTAATTACTTTTATG
61726668 ATTTTA
1 ATTTTA
61726674 TTTTACTATG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.02, G:0.05, T:0.67
Consensus pattern (18 bp):
ATTTTAATTACTTTTATG
Found at i:61731011 original size:6 final size:6
Alignment explanation
Indices: 61731002--61731038 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
61730992 TAAGTCTAAG
* *
61731002 AAAATA AAAATG AACATA AAAATA AAAATA AAAATA A
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA A
61731039 GATGAAACAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:61734321 original size:80 final size:80
Alignment explanation
Indices: 61734227--61734386 Score: 275
Period size: 80 Copynumber: 2.0 Consensus size: 80
61734217 ACAGGTGAAG
* * *
61734227 GCATGAAGGTCGTAAAGCCTCAAAATTTAACTTTCATATAGACACACGTATAACGTAACATTTAT
1 GCATGAAAGTCGTAAAGCCTCAAAATTTAACTTCCATATAGACACACGTATAACATAACATTTAT
61734292 CATCAACATAATCAT
66 CATCAACATAATCAT
* *
61734307 GCATGAAAGTCGTAAAGCCTCAAAATTTGACTTCCATATATACACACGTATAACATAACATTTAT
1 GCATGAAAGTCGTAAAGCCTCAAAATTTAACTTCCATATAGACACACGTATAACATAACATTTAT
61734372 CATCAACATAATCAT
66 CATCAACATAATCAT
61734387 TATAATCATT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 75 1.00
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.29
Consensus pattern (80 bp):
GCATGAAAGTCGTAAAGCCTCAAAATTTAACTTCCATATAGACACACGTATAACATAACATTTAT
CATCAACATAATCAT
Found at i:61739294 original size:106 final size:106
Alignment explanation
Indices: 61739109--61739313 Score: 374
Period size: 106 Copynumber: 1.9 Consensus size: 106
61739099 ACAAAAATTG
*
61739109 TTATAAGATGAAGTTTATATGCTTAGACTCCTTAATGAGTCTAGGTTCAAATTAAATAAACTAGG
1 TTATAAGATGAAGTTTATATGCTTAGACTCCTTAATGAGTCTAGGTTCAAATTAAATAAACTAGA
61739174 ACATATTTTGAATTTTGTACAATGAGAAATTTGAACATAGT
66 ACATATTTTGAATTTTGTACAATGAGAAATTTGAACATAGT
* * *
61739215 TTATAAGGTGAAGTTTATATGCTTAGACTCTTTAATGAGTCTAGTTTCAAATTAAATAAACTAGA
1 TTATAAGATGAAGTTTATATGCTTAGACTCCTTAATGAGTCTAGGTTCAAATTAAATAAACTAGA
61739280 ACATATTTTGAATTTTGTACAATGAGAAATTTGA
66 ACATATTTTGAATTTTGTACAATGAGAAATTTGA
61739314 TTCGTAGTGA
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
106 95 1.00
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (106 bp):
TTATAAGATGAAGTTTATATGCTTAGACTCCTTAATGAGTCTAGGTTCAAATTAAATAAACTAGA
ACATATTTTGAATTTTGTACAATGAGAAATTTGAACATAGT
Found at i:61741477 original size:45 final size:45
Alignment explanation
Indices: 61741403--61741742 Score: 461
Period size: 45 Copynumber: 7.6 Consensus size: 45
61741393 TTGATTTGAT
* * *
61741403 TATTTGGGCCTTTGAGCCTTGCAGACTATGATGCCAGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCAGTGAAATAC
*
61741448 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCAGTGAAATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCAGTGAAATAC
*
61741493 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCGAGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCAGTGAAATAC
* * * *
61741538 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGTCGGTAAAATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCAGTGAAATAC
* * *
61741583 TATTCGGGCCTTTGAGCATAGCAAGCTATGATGCCAGTGAAATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCAGTGAAATAC
* *
61741628 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCAGTGAAATAC
* * **
61741673 TATTCGAG-CTTTCGAGCCTAGCAGGCTATAATGCTGGTGAAATGA-
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATGATGCCAGTGAAAT-AC
* *
61741718 TAATCGGGCC-TCGAGCCTAGCAGGC
1 TATTCGGGCCTTTGAGCCTAGCAGGC
61741743 GAAATGTCGG
Statistics
Matches: 264, Mismatches: 28, Indels: 7
0.88 0.09 0.02
Matches are distributed among these distances:
44 17 0.06
45 245 0.93
46 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCAGTGAAATAC
Found at i:61748554 original size:20 final size:21
Alignment explanation
Indices: 61748508--61748560 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
61748498 ATCTAATTAC
61748508 AAATATTTAATAATTATATTT
1 AAATATTTAATAATTATATTT
61748529 AAATATTTAA-AA-TATAATTT
1 AAATATTTAATAATTAT-ATTT
*
61748549 ATATATTCTAAT
1 AAATATT-TAAT
61748561 TAAATTTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 3 0.11
20 12 0.43
21 13 0.46
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
AAATATTTAATAATTATATTT
Found at i:61753656 original size:6 final size:6
Alignment explanation
Indices: 61753647--61753681 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
61753637 GGTAGCTGAA
*
61753647 ATATAT ATATAG ATATAG ATATAG ATATAG ATATA
1 ATATAG ATATAG ATATAG ATATAG ATATAG ATATA
61753682 TAGTAGAAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.37
Consensus pattern (6 bp):
ATATAG
Found at i:61757729 original size:23 final size:23
Alignment explanation
Indices: 61757699--61757746 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
61757689 TCCTAAAGGA
61757699 ATGCCATCTAGTTAATGTGGGTT
1 ATGCCATCTAGTTAATGTGGGTT
61757722 ATGCCATCTAGTTAATGTGGGTT
1 ATGCCATCTAGTTAATGTGGGTT
61757745 AT
1 AT
61757747 ACAGGGGTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.23, C:0.12, G:0.25, T:0.40
Consensus pattern (23 bp):
ATGCCATCTAGTTAATGTGGGTT
Found at i:61777926 original size:50 final size:50
Alignment explanation
Indices: 61777806--61778101 Score: 252
Period size: 50 Copynumber: 5.9 Consensus size: 50
61777796 ATTGTGAGAA
* ** * *** *
61777806 CACATGTGTAGTACTATGAACAGGCTACTATGTGTTTAAGATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG--TTAGGT
* * *
61777858 CACGTATGTAGTAGTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * ** * * * ***
61777908 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGACAACTTCTAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTTAGGT
* * ** *
61777959 CACGTGTGCAGTACTAAGTGCAGGCTACTACGTGTAATAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* *** *
61778009 CACATGTGTAATACTAAGTGCAGGCTACTACGTGTATTGGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * *
61778058 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
61778102 CTTCGGTTAC
Statistics
Matches: 190, Mismatches: 53, Indels: 5
0.77 0.21 0.02
Matches are distributed among these distances:
49 39 0.21
50 82 0.43
51 36 0.19
52 33 0.17
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
Found at i:61777992 original size:101 final size:101
Alignment explanation
Indices: 61777857--61778038 Score: 292
Period size: 101 Copynumber: 1.8 Consensus size: 101
61777847 TGGTTTTAGG
* * * * *
61777857 TCACGTATGTAGTAGTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTAC
1 TCACGTATGCAGTACTAAGTGCAGGCTACTACGTGTAACAGATAGTTAGGTCACATGTGTAATAC
61777922 TAAGTGCAGGCTACTATGCATACCCGACAACTTCTA
66 TAAGTGCAGGCTACTATGCATACCCGACAACTTCTA
* * *
61777958 TCACGTGTGCAGTACTAAGTGCAGGCTACTACGTGTAATAGATGGTTAGGTCACATGTGTAATAC
1 TCACGTATGCAGTACTAAGTGCAGGCTACTACGTGTAACAGATAGTTAGGTCACATGTGTAATAC
61778023 TAAGTGCAGGCTACTA
66 TAAGTGCAGGCTACTA
61778039 CGTGTATTGG
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
101 73 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (101 bp):
TCACGTATGCAGTACTAAGTGCAGGCTACTACGTGTAACAGATAGTTAGGTCACATGTGTAATAC
TAAGTGCAGGCTACTATGCATACCCGACAACTTCTA
Found at i:61778130 original size:150 final size:151
Alignment explanation
Indices: 61777826--61778133 Score: 365
Period size: 150 Copynumber: 2.0 Consensus size: 151
61777816 GTACTATGAA
* * * * *
61777826 CAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACGTATGTAGTAGTAAGTGCAGGCTACTACGT
1 CAGGCTACTACGTGTATAAGATGG-TTTAGGTCACATATGTAATACTAAGTGCAGGCTACTACGT
*
61777891 GTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGACAACTTC
65 GTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGACAACTTC
* * *
61777956 TATCACGTGTGCAGTACTAAGTG
130 TATCAAGGGTG-AGTAATAAGTG
*
61777979 CAGGCTACTACGTGTA-ATAGATGG-TTAGGTCACATGTGTAATACTAAGTGCAGGCTACTACGT
1 CAGGCTACTACGTGTATA-AGATGGTTTAGGTCACATATGTAATACTAAGTGCAGGCTACTACGT
*** * * * *
61778042 GTATTGGATTGTT-GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGCTTC
65 GTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGACAACTTC
*
61778106 GGT-TACAAGGGTG-GTAATATGTG
130 --TAT-CAAGGGTGAGTAATAAGTG
61778129 CAGGC
1 CAGGC
61778134 AATCGTATAT
Statistics
Matches: 133, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
150 60 0.45
151 45 0.34
152 8 0.06
153 20 0.15
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (151 bp):
CAGGCTACTACGTGTATAAGATGGTTTAGGTCACATATGTAATACTAAGTGCAGGCTACTACGTG
TACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGACAACTTCT
ATCAAGGGTGAGTAATAAGTG
Found at i:61782361 original size:44 final size:44
Alignment explanation
Indices: 61782208--61782368 Score: 145
Period size: 43 Copynumber: 3.7 Consensus size: 44
61782198 AAAGCTCATA
* * *
61782208 CAATGCCAACGTCCAAGACGTGGTCTTACATGT-AACCAAATAT
1 CAATGCCAATGTCCAAGACGTGGTCTTACACGTAAATCAAATAT
* * * *
61782251 CGATGCCACTGTCCCAGACAG-GGTCTTACATG-AAATCAAATAT
1 CAATGCCAATGTCCAAGAC-GTGGTCTTACACGTAAATCAAATAT
* * * * *
61782294 -GATGTCGATGTCCTAGACATGGTCTTACACGTAAATCATAAT-T
1 CAATGCCAATGTCCAAGACGTGGTCTTACACGTAAATCA-AATAT
61782337 CAATGCCAATGTCTC-AGACGTGGTCTTACACG
1 CAATGCCAATGTC-CAAGACGTGGTCTTACACG
61782369 AAAACACATA
Statistics
Matches: 96, Mismatches: 15, Indels: 13
0.77 0.12 0.10
Matches are distributed among these distances:
42 24 0.25
43 42 0.44
44 29 0.30
45 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (44 bp):
CAATGCCAATGTCCAAGACGTGGTCTTACACGTAAATCAAATAT
Found at i:61787517 original size:30 final size:30
Alignment explanation
Indices: 61787483--61787570 Score: 88
Period size: 30 Copynumber: 2.9 Consensus size: 30
61787473 CTAGCTTATA
* *
61787483 TTCAGCTCACGAGCTAAACCTTAGCTCAAC
1 TTCAGCTTAAGAGCTAAACCTTAGCTCAAC
* * *
61787513 TTCAGCTTAGGAG-TATAATCTCAGCTCAAC
1 TTCAGCTTAAGAGCTA-AACCTTAGCTCAAC
* * *
61787543 TTTAGCTTAAGGGCTAAAGCTTAGCTCA
1 TTCAGCTTAAGAGCTAAACCTTAGCTCA
61787571 TTTTAGCTCA
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
29 2 0.04
30 43 0.91
31 2 0.04
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (30 bp):
TTCAGCTTAAGAGCTAAACCTTAGCTCAAC
Found at i:61789969 original size:20 final size:21
Alignment explanation
Indices: 61789944--61789982 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
61789934 CTCTTAAAAT
61789944 AGGGC-ACACGCCCGTGTGAA
1 AGGGCAACACGCCCGTGTGAA
61789964 AGGGCAACACGCCCGTGTG
1 AGGGCAACACGCCCGTGTG
61789983 GTTATTATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.23, C:0.31, G:0.36, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGAA
Found at i:61791100 original size:46 final size:47
Alignment explanation
Indices: 61791030--61791251 Score: 242
Period size: 46 Copynumber: 4.8 Consensus size: 47
61791020 TTATTTGTGT
*
61791030 GCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGATGTAA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGT-A
61791076 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGT-
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA
** * ** *
61791120 GTTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCAATA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGAT--GTA
* * * *
61791169 GTCAGTGTAAGACCATGTCTGGGACATGGCA-CCGACTTGATGGATG-A
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA--GATGTA
*
61791216 GCCAGTGTAAGACCATGTCAGGGACATGGCATCGGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
61791252 ATTATACCCT
Statistics
Matches: 149, Mismatches: 19, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
44 10 0.07
45 14 0.09
46 56 0.38
47 30 0.20
48 9 0.06
49 29 0.19
50 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.23
Consensus pattern (47 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA
Found at i:61791233 original size:96 final size:92
Alignment explanation
Indices: 61791030--61791251 Score: 252
Period size: 96 Copynumber: 2.4 Consensus size: 92
61791020 TTATTTGTGT
* **
61791030 GCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGATGTAAGCCAGTGTAAGACATGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATCAAAGCCAGTGTAAGACATGT
* * *
61791093 CTGGGACATGCATCGGCCTCGAGATGT
66 CTGGGACATGCATCCGACTCGAGATGA
** * ** *
61791120 GTTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCAATAGTCAGTGTAAGACCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATCAA-AGCCAGTGTAAGA-CAT
*
61791185 GTCTGGGACATGGCA-CCGACTTGATGGATGA
64 GTCTGGGACAT-GCATCCGACTCGA--GATGA
*
61791216 GCCAGTGTAAGACCATGTCAGGGACATGGCATCGGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
61791252 ATTATACCCT
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
90 10 0.09
91 13 0.12
92 14 0.13
93 12 0.11
94 20 0.19
95 3 0.03
96 36 0.33
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.23
Consensus pattern (92 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATCAAAGCCAGTGTAAGACATGT
CTGGGACATGCATCCGACTCGAGATGA
Found at i:61793586 original size:46 final size:46
Alignment explanation
Indices: 61793463--61793593 Score: 183
Period size: 46 Copynumber: 2.8 Consensus size: 46
61793453 ACATCTCGTA
* **
61793463 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCGCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATAACGAG
* * *
61793509 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTCT-CATAATGTG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACATAACGAG
*
61793555 GCCGATGCATGTCCCAGACATGTCTTACACTGGCATACA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACA
61793594 AATAACCTGA
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
45 1 0.01
46 73 0.97
47 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATAACGAG
Found at i:61818423 original size:18 final size:19
Alignment explanation
Indices: 61818402--61818442 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
61818392 TTATTAAATT
61818402 TTAATAAAAATA-TAAAAA
1 TTAATAAAAATATTAAAAA
*
61818420 TTAA-AAAATTATTAAAAA
1 TTAATAAAAATATTAAAAA
61818438 TTAAT
1 TTAAT
61818443 TTTTTATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
TTAATAAAAATATTAAAAA
Found at i:61818432 original size:36 final size:34
Alignment explanation
Indices: 61818392--61818501 Score: 85
Period size: 36 Copynumber: 2.9 Consensus size: 34
61818382 TTTAGACAAT
61818392 TTATTAAATTTTAATAAAAATATAAAAATTAAAAAA
1 TTATTAAATTTT-ATAAAAATATAAAAATT-AAAAA
*
61818428 TTATTAAAAATTAATTTTTTATAAAAATAGTAAAAAAGTAAAAA
1 TTATT----A--AA--TTTTATAAAAATA-T-AAAAATTAAAAA
*
61818472 TTATAAAATTTTATAAAAATCATAAAAATT
1 TTATTAAATTTTATAAAAAT-ATAAAAATT
61818502 TTTAATGAAC
Statistics
Matches: 60, Mismatches: 3, Indels: 23
0.70 0.03 0.27
Matches are distributed among these distances:
35 6 0.10
36 18 0.30
37 1 0.02
38 2 0.03
40 2 0.03
42 2 0.03
43 9 0.15
44 14 0.23
45 6 0.10
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (34 bp):
TTATTAAATTTTATAAAAATATAAAAATTAAAAA
Found at i:61818441 original size:43 final size:43
Alignment explanation
Indices: 61818394--61818479 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
61818384 TAGACAATTT
*
61818394 ATTAAATTTTAATAAAAATA-T-AAAAATTAAAAAATTATTAAAA
1 ATTAAATTTTAATAAAAATAGTAAAAAAGT-AAAAATTA-TAAAA
* *
61818437 ATTAATTTTTTATAAAAATAGTAAAAAAGTAAAAATTATAAAA
1 ATTAAATTTTAATAAAAATAGTAAAAAAGTAAAAATTATAAAA
61818480 TTTTATAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 23 0.61
44 9 0.24
45 6 0.16
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (43 bp):
ATTAAATTTTAATAAAAATAGTAAAAAAGTAAAAATTATAAAA
Found at i:61818490 original size:19 final size:20
Alignment explanation
Indices: 61818466--61818503 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
61818456 AGTAAAAAAG
*
61818466 TAAAAATTAT-AAAATTTTA
1 TAAAAATCATAAAAATTTTA
61818485 TAAAAATCATAAAAATTTT
1 TAAAAATCATAAAAATTTT
61818504 TAATGAACCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (20 bp):
TAAAAATCATAAAAATTTTA
Found at i:61818684 original size:25 final size:25
Alignment explanation
Indices: 61818647--61818700 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 25
61818637 CTTTATAAAA
*
61818647 TTTTATAATTTTTACTATTTTTATTT
1 TTTTATAATTTTTAATA-TTTTATTT
*
61818673 TTTTCTAATTTTTAATATTTTATTT
1 TTTTATAATTTTTAATATTTTATTT
61818698 TTT
1 TTT
61818701 ATTAAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 11 0.42
26 15 0.58
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (25 bp):
TTTTATAATTTTTAATATTTTATTT
Found at i:61818711 original size:25 final size:25
Alignment explanation
Indices: 61818665--61818714 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
61818655 TTTTTACTAT
**
61818665 TTTTATTTTTTTCTAATTTTTAATA
1 TTTTATTTTTTTCTAAAATTTAATA
61818690 TTTTATTTTTTAT-TAAAATTTAATA
1 TTTTATTTTTT-TCTAAAATTTAATA
61818715 AATTTATAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (25 bp):
TTTTATTTTTTTCTAAAATTTAATA
Found at i:61818741 original size:21 final size:21
Alignment explanation
Indices: 61818717--61818759 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
61818707 ATTTAATAAA
61818717 TTTATAGATTTTTT-TAATTTT
1 TTTA-AGATTTTTTCTAATTTT
**
61818738 TTTAATTTTTTTTCTAATTTT
1 TTTAAGATTTTTTCTAATTTT
61818759 T
1 T
61818760 AATAAAGGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (21 bp):
TTTAAGATTTTTTCTAATTTT
Found at i:61818759 original size:9 final size:9
Alignment explanation
Indices: 61818724--61818749 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
61818714 AAATTTATAG
61818724 ATTTTTTTA
1 ATTTTTTTA
61818733 ATTTTTTTA
1 ATTTTTTTA
61818742 ATTTTTTT
1 ATTTTTTT
61818750 TCTAATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
ATTTTTTTA
Found at i:61822607 original size:29 final size:30
Alignment explanation
Indices: 61822560--61822627 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
61822550 TGGCCCAGGA
* *
61822560 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
61822590 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
61822620 GCAAATAT
1 GTAAATAT
61822628 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:61824952 original size:39 final size:40
Alignment explanation
Indices: 61824855--61824986 Score: 230
Period size: 40 Copynumber: 3.3 Consensus size: 40
61824845 AATTTCTAGT
*
61824855 ACAAAGCCTGCGGGATTTAACCCGGATATCTATTAGCAGC
1 ACAAAGCCTGCGGGATTTAACCCGGATATCTATTACCAGC
61824895 ACAAAGCCTGCGGGATTTAACCCGGATATCTATTACCAGC
1 ACAAAGCCTGCGGGATTTAACCCGGATATCTATTACCAGC
* *
61824935 AC-AAGCCTGCGGGATTTAACCTGGATATCTATTGCCAGC
1 ACAAAGCCTGCGGGATTTAACCCGGATATCTATTACCAGC
61824974 ACAAAGCCTGCGG
1 ACAAAGCCTGCGG
61824987 ACTATAAGTC
Statistics
Matches: 88, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
39 37 0.42
40 51 0.58
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.22
Consensus pattern (40 bp):
ACAAAGCCTGCGGGATTTAACCCGGATATCTATTACCAGC
Found at i:61826868 original size:46 final size:46
Alignment explanation
Indices: 61826815--61826983 Score: 232
Period size: 46 Copynumber: 3.7 Consensus size: 46
61826805 GTGCTCTCTA
** *
61826815 ATATGAAATACGTAAGACCATGGTTGAAAGATACCATGGTAGCCTG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAACCTG
* *
61826861 ATATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGTAACTTG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAACCTG
* *
61826907 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAACCTG
* * *
61826953 ACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 ATATG-AAATGTGTAAGACCATGGTTGAAAGA
61826984 CACTATGGCA
Statistics
Matches: 111, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
45 1 0.01
46 110 0.99
ACGTcount: A:0.41, C:0.12, G:0.23, T:0.24
Consensus pattern (46 bp):
ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAACCTG
Found at i:61828302 original size:30 final size:30
Alignment explanation
Indices: 61828235--61828302 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
61828225 CACCCTTAAA
* * *
61828235 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
61828265 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
61828294 AGTATTTAC
1 A-TATTTAC
61828303 TCTTCGACCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:61829098 original size:105 final size:101
Alignment explanation
Indices: 61828984--61829174 Score: 242
Period size: 105 Copynumber: 1.9 Consensus size: 101
61828974 ACTCGTAATT
* * * *
61828984 CCATAACCCAGTTATGGT-TTTATCATCAGG-ATGTCATAGCCCATCTATGGTCTTACACTTGTA
1 CCATAACCCAGTTATCGTCTTT-TCA-CAGGAATGCCATAGCCCAGCTATAGTCTTACA-TT-TA
61829047 CACATACTGCCATAGTCCAACCATGGTCTTACGTTCACGGTG
62 -A-ATACTGCCATAGTCCAACCATGGTCTTACGTTCACGGTG
*
61829089 CCATAACCCAGTTATCGTCTTTTCACTGGAATGCCATAGCCCAGCTATAGTCTTACATTTAAATA
1 CCATAACCCAGTTATCGTCTTTTCACAGGAATGCCATAGCCCAGCTATAGTCTTACATTTAAATA
* * *
61829154 TTGTCATGGTCCAACCATGGT
66 CTGCCATAGTCCAACCATGGT
61829175 TTTATCTGTC
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
101 21 0.28
102 1 0.01
103 2 0.03
104 5 0.07
105 44 0.58
106 3 0.04
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (101 bp):
CCATAACCCAGTTATCGTCTTTTCACAGGAATGCCATAGCCCAGCTATAGTCTTACATTTAAATA
CTGCCATAGTCCAACCATGGTCTTACGTTCACGGTG
Found at i:61829735 original size:14 final size:14
Alignment explanation
Indices: 61829716--61829744 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
61829706 CCTAAAATCA
61829716 TTTTCTATTGAATT
1 TTTTCTATTGAATT
61829730 TTTTCTATTGAATT
1 TTTTCTATTGAATT
61829744 T
1 T
61829745 ACTTAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCTATTGAATT
Found at i:61830046 original size:39 final size:39
Alignment explanation
Indices: 61829992--61830072 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
61829982 AATGGCTGTT
61829992 TTTGGCTGAAGAAATGTGAAGATTTGTCTGGAATTTCAA
1 TTTGGCTGAAGAAATGTGAAGATTTGTCTGGAATTTCAA
61830031 TTTGGCTGAAGAAATGTGAAGATTTGTCTGGAATTTCAA
1 TTTGGCTGAAGAAATGTGAAGATTTGTCTGGAATTTCAA
61830070 TTT
1 TTT
61830073 AGTCTCTTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (39 bp):
TTTGGCTGAAGAAATGTGAAGATTTGTCTGGAATTTCAA
Found at i:61836156 original size:21 final size:21
Alignment explanation
Indices: 61836130--61836170 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
61836120 AGACGAGCAA
* *
61836130 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
61836151 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
61836171 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:61841356 original size:15 final size:15
Alignment explanation
Indices: 61841310--61841358 Score: 64
Period size: 16 Copynumber: 3.3 Consensus size: 15
61841300 TAAGCAAACC
*
61841310 TATTAATTATAAT-T
1 TATTAATTAAAATAT
*
61841324 TATTAAATAAATATAT
1 TATTAATTAAA-ATAT
61841340 TATTAATTAAAATAT
1 TATTAATTAAAATAT
61841355 TATT
1 TATT
61841359 TTGATAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
14 9 0.30
15 10 0.33
16 11 0.37
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TATTAATTAAAATAT
Found at i:61841513 original size:32 final size:32
Alignment explanation
Indices: 61841477--61841539 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
61841467 TTTTAAATTT
* *
61841477 ATAAATTGATT-ATTTGAATTTAATAACTCATG
1 ATAAATTAATTAATTT-AAATTAATAACTCATG
*
61841509 ATAAATTAATTAATTTAAATTGATAACTCAT
1 ATAAATTAATTAATTTAAATTAATAACTCAT
61841540 ACTGATTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 23 0.85
33 4 0.15
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.43
Consensus pattern (32 bp):
ATAAATTAATTAATTTAAATTAATAACTCATG
Found at i:61845793 original size:20 final size:19
Alignment explanation
Indices: 61845764--61845801 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
61845754 ATAATTGTTG
61845764 AATAGATATGTTTGCTATT
1 AATAGATATGTTTGCTATT
*
61845783 AATATGATATGTTTTCTAT
1 AATA-GATATGTTTGCTAT
61845802 ATTTTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.32, C:0.05, G:0.13, T:0.50
Consensus pattern (19 bp):
AATAGATATGTTTGCTATT
Found at i:61854588 original size:18 final size:17
Alignment explanation
Indices: 61854565--61854626 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 17
61854555 CTCATTAGCA
61854565 TATTATTATTTTTACTAT
1 TATTATTATTTTTAC-AT
*
61854583 TATTATTATTTTCACCAT
1 TATTATTATTTTTA-CAT
**
61854601 TGCTATTATGTTTTAACAT
1 TATTATTAT-TTTT-ACAT
61854620 TATTATT
1 TATTATT
61854627 TTCTATTATT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
18 22 0.63
19 12 0.34
20 1 0.03
ACGTcount: A:0.27, C:0.10, G:0.03, T:0.60
Consensus pattern (17 bp):
TATTATTATTTTTACAT
Found at i:61854788 original size:21 final size:21
Alignment explanation
Indices: 61854762--61854807 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
61854752 ACTATTTGCT
*
61854762 ATTATTATTATTACTAGTTTC
1 ATTATTATTATCACTAGTTTC
* * *
61854783 ATTATTGTTATCACTATTTTT
1 ATTATTATTATCACTAGTTTC
61854804 ATTA
1 ATTA
61854808 CTACTGATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.09, G:0.04, T:0.59
Consensus pattern (21 bp):
ATTATTATTATCACTAGTTTC
Found at i:61854835 original size:3 final size:3
Alignment explanation
Indices: 61854829--61854882 Score: 63
Period size: 3 Copynumber: 18.0 Consensus size: 3
61854819 ATTACTCCTT
* * * * *
61854829 TTA TTA TTA ATA TTA TTG TTA CTA TTA TCA TTA TTA TTA TTA GTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
61854877 TTA TTA
1 TTA TTA
61854883 CCACCTTATT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:61855138 original size:17 final size:19
Alignment explanation
Indices: 61855102--61855138 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
61855092 ATATCTGTAT
*
61855102 TATTATTTCACTATTGTTA
1 TATTATTTCACTATTATTA
61855121 TATT-TTTCAC-ATTATTA
1 TATTATTTCACTATTATTA
61855138 T
1 T
61855139 TATCATTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 7 0.41
18 6 0.35
19 4 0.24
ACGTcount: A:0.27, C:0.11, G:0.03, T:0.59
Consensus pattern (19 bp):
TATTATTTCACTATTATTA
Found at i:61856355 original size:18 final size:20
Alignment explanation
Indices: 61856322--61856363 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 20
61856312 TAATTTCATG
*
61856322 TTATAAACACTATAAATAAA
1 TTATAAACACTATAAAAAAA
61856342 TTATAAA-A-TATAAAAAAA
1 TTATAAACACTATAAAAAAA
61856360 TTAT
1 TTAT
61856364 TTTATTGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 13 0.62
19 1 0.05
20 7 0.33
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (20 bp):
TTATAAACACTATAAAAAAA
Found at i:61858169 original size:17 final size:17
Alignment explanation
Indices: 61858135--61858169 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
61858125 TAATTGTGTG
* *
61858135 TATATATTATGTGTATA
1 TATATATTATATGCATA
61858152 TATATATTATATGCATA
1 TATATATTATATGCATA
61858169 T
1 T
61858170 CAGTGATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.37, C:0.03, G:0.09, T:0.51
Consensus pattern (17 bp):
TATATATTATATGCATA
Found at i:61860452 original size:47 final size:47
Alignment explanation
Indices: 61860336--61860468 Score: 153
Period size: 46 Copynumber: 2.9 Consensus size: 47
61860326 ATAATCTCAC
* * *
61860336 CCATAATGAACTCGGAACGCAACTCAAAGAGCTCGGGTG-TTCGAAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCGAAT
* * * *
61860382 CTATAATGAACTCTGAACACAACTCAACGAGTTCGGATGCTT-GCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCGAAT
* * *
61860428 CCATAGGTGAACTCGGAATGCAACTCAACGAGTTCAGATGC
1 CCATA-ATGAACTCGGAACGCAACTCAACGAGTTCGGATGC
61860469 CTCATAATTC
Statistics
Matches: 72, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
46 40 0.56
47 32 0.44
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22
Consensus pattern (47 bp):
CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCGAAT
Found at i:61862913 original size:15 final size:15
Alignment explanation
Indices: 61862861--61862914 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
61862851 TAAAGATAAC
*
61862861 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
*
61862875 AAGAAATCCA-AGATA
1 AAGAAACCCAGA-ATA
61862890 GAA-AAACCCAGAATA
1 -AAGAAACCCAGAATA
61862905 AAGAAACCCA
1 AAGAAACCCA
61862915 AGATACGATA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
14 11 0.33
15 19 0.58
16 3 0.09
ACGTcount: A:0.61, C:0.19, G:0.13, T:0.07
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:61866183 original size:46 final size:46
Alignment explanation
Indices: 61866114--61866246 Score: 162
Period size: 46 Copynumber: 2.9 Consensus size: 46
61866104 ATAATCTCAC
61866114 CCATAATGAACTCGGAACGCAACTCAATGAGCTCAGG-TG-TTCGAAT
1 CCATAATGAACTCGGAACGCAACTCAATGAGCTC-GGATGCTT-GAAT
* * * *
61866160 CCATAATGAATTCGGAACACAACTCAATGAGTTCGGATGCTTGCAT
1 CCATAATGAACTCGGAACGCAACTCAATGAGCTCGGATGCTTGAAT
* * *
61866206 CCATAGATGAACTCGAAACGCAACTCAAGGAGTTCGGATGC
1 CCATA-ATGAACTCGGAACGCAACTCAATGAGCTCGGATGC
61866247 CTCATAATTC
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
45 2 0.03
46 41 0.54
47 33 0.43
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAATGAACTCGGAACGCAACTCAATGAGCTCGGATGCTTGAAT
Found at i:61866239 original size:47 final size:47
Alignment explanation
Indices: 61866114--61866287 Score: 176
Period size: 47 Copynumber: 3.7 Consensus size: 47
61866104 ATAATCTCAC
*
61866114 CCATAATGAACTCGGAACGCAACTCAATGAGCTCAGG-TG-TTCGAAT
1 CCATAATGAACTCGGAACGCAACTCAATGAGTTC-GGATGCTTCGAAT
* * *
61866160 CCATAATGAATTCGGAACACAACTCAATGAGTTCGGATGCTT-GCAT
1 CCATAATGAACTCGGAACGCAACTCAATGAGTTCGGATGCTTCGAAT
* * * *
61866206 CCATAGATGAACTCGAAACGCAACTCAAGGAGTTCGGATGCCTCATAAT
1 CCATA-ATGAACTCGGAACGCAACTCAATGAGTTCGGATGCTTC-GAAT
* * * * *
61866255 TC-TCATGAACTCGGACCACAACTCAAGGAGTTC
1 CCATAATGAACTCGGAACGCAACTCAATGAGTTC
61866288 TGATCTCAAT
Statistics
Matches: 107, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
45 2 0.02
46 41 0.38
47 60 0.56
48 1 0.01
49 3 0.03
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (47 bp):
CCATAATGAACTCGGAACGCAACTCAATGAGTTCGGATGCTTCGAAT
Found at i:61868331 original size:8 final size:10
Alignment explanation
Indices: 61868308--61868332 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
61868298 GGGATAAATA
61868308 TATATACTAT
1 TATATACTAT
61868318 TATATACTAT
1 TATATACTAT
61868328 TATAT
1 TATAT
61868333 TTTAATTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (10 bp):
TATATACTAT
Found at i:61868989 original size:20 final size:20
Alignment explanation
Indices: 61868964--61869012 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
61868954 GATTTAAAGA
61868964 TCCACACGGCCAAAACTATT
1 TCCACACGGCCAAAACTATT
61868984 TCCACACGGCCAAAACTATT
1 TCCACACGGCCAAAACTATT
61869004 TCCACACGG
1 TCCACACGG
61869013 GCTGAGCACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.33, C:0.37, G:0.12, T:0.18
Consensus pattern (20 bp):
TCCACACGGCCAAAACTATT
Found at i:61883221 original size:57 final size:57
Alignment explanation
Indices: 61883154--61883267 Score: 210
Period size: 57 Copynumber: 2.0 Consensus size: 57
61883144 TTTGAGTTAG
* *
61883154 TTTTGAATTTTGAAGAAATCGACAAAGAGTTACATGGCCAGGCGACACGGTCGTGTA
1 TTTTGAATTTTGAAGAAATCGACAAAGAGTTACACGGCCAGGCGACACGGTCATGTA
61883211 TTTTGAATTTTGAAGAAATCGACAAAGAGTTACACGGCCAGGCGACACGGTCATGTA
1 TTTTGAATTTTGAAGAAATCGACAAAGAGTTACACGGCCAGGCGACACGGTCATGTA
61883268 ACCCACACGG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.25
Consensus pattern (57 bp):
TTTTGAATTTTGAAGAAATCGACAAAGAGTTACACGGCCAGGCGACACGGTCATGTA
Found at i:61884065 original size:4 final size:4
Alignment explanation
Indices: 61884058--61884083 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
61884048 ACCCTTCCTT
61884058 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
61884084 CCTTTATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:61892466 original size:21 final size:20
Alignment explanation
Indices: 61892442--61892487 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
61892432 TGAAATGCAA
61892442 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
61892463 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
61892483 T-AACC
1 TCAACC
61892488 ATTCCAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:61892873 original size:51 final size:51
Alignment explanation
Indices: 61892797--61892898 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
61892787 TCAAATGATC
61892797 AGCCTAAGGGGGTTTTTATAGTTGAAGAGGGCTGCTAAAAATAGCTAAAAT
1 AGCCTAAGGGGGTTTTTATAGTTGAAGAGGGCTGCTAAAAATAGCTAAAAT
61892848 AGCCTAAGGGGGTTTTTATAGTTGAAGAGGGCTGCTAAAAATAGCTAAAAT
1 AGCCTAAGGGGGTTTTTATAGTTGAAGAGGGCTGCTAAAAATAGCTAAAAT
61892899 TATCAGCCAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.35, C:0.10, G:0.27, T:0.27
Consensus pattern (51 bp):
AGCCTAAGGGGGTTTTTATAGTTGAAGAGGGCTGCTAAAAATAGCTAAAAT
Found at i:61893542 original size:39 final size:39
Alignment explanation
Indices: 61893488--61893567 Score: 142
Period size: 39 Copynumber: 2.1 Consensus size: 39
61893478 AAAAGTGTGT
*
61893488 ATATTTTTGTGTTTCCAACTGATATCTTTTAGGTTGGGC
1 ATATTTTTGTGTTTCCAACTGATATATTTTAGGTTGGGC
*
61893527 ATATTTTTGTGTTTCCAGCTGATATATTTTAGGTTGGGC
1 ATATTTTTGTGTTTCCAACTGATATATTTTAGGTTGGGC
61893566 AT
1 AT
61893568 TAACTATCTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.19, C:0.11, G:0.21, T:0.49
Consensus pattern (39 bp):
ATATTTTTGTGTTTCCAACTGATATATTTTAGGTTGGGC
Found at i:61901110 original size:93 final size:91
Alignment explanation
Indices: 61900951--61901171 Score: 316
Period size: 93 Copynumber: 2.4 Consensus size: 91
61900941 TTCGACATGA
* * * *
61900951 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCACGTTGCCATGGTATCATTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTGTCACGTTGCCATGGTATCATTCAAC
** * *
61901016 CATGGTCTTATTCATTTCCCCGTCACGT
65 CATGGTCTTACACATTT-CACATCACGT
*
61901044 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TGTCACGTTGCCATGGTATCATTCAAC
* *
61901109 CATGGTCTTACACATTTCATATCAGGT
65 CATGGTCTTACACATTTCACATCACGT
61901136 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT
61901172 TCTATCAGAG
Statistics
Matches: 116, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
92 46 0.40
93 70 0.60
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (91 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTGTCACGTTGCCATGGTATCATTCAACC
ATGGTCTTACACATTTCACATCACGT
Found at i:61901179 original size:46 final size:46
Alignment explanation
Indices: 61900951--61901174 Score: 308
Period size: 46 Copynumber: 4.8 Consensus size: 46
61900941 TTCGACATGA
* * * *
61900951 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTGTCACGT
* ** * *
61900997 TGCCATGGTATCATTCAACCATGGTCTTATTCATTTCCCCGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT-TCTGTCACGT
61901044 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TGTCACGT
* *
61901090 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TGTCACGT
61901136 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCT
61901175 ATCAGAGAGC
Statistics
Matches: 161, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
45 1 0.01
46 118 0.73
47 42 0.26
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTGTCACGT
Found at i:61903343 original size:11 final size:11
Alignment explanation
Indices: 61903327--61903378 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
61903317 TATACTAAAT
61903327 AAATAATAATA
1 AAATAATAATA
*
61903338 AAATAAT-ATT
1 AAATAATAATA
* *
61903348 AAATATCTCATA
1 AAATA-ATAATA
*
61903360 AAATATTAATA
1 AAATAATAATA
61903371 AAATAATA
1 AAATAATA
61903379 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:61906689 original size:9 final size:9
Alignment explanation
Indices: 61906677--61906708 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
61906667 AAGAAAAAAA
61906677 AAAGTAAAT
1 AAAGTAAAT
61906686 AAAGTAAAT
1 AAAGTAAAT
*
61906695 AAAATAAAT
1 AAAGTAAAT
61906704 AAAGT
1 AAAGT
61906709 GGGGAAGAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.22
Consensus pattern (9 bp):
AAAGTAAAT
Found at i:61911492 original size:15 final size:15
Alignment explanation
Indices: 61911442--61911492 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
61911432 GAATTTGAAA
61911442 ATAAAATA-TTTAAT
1 ATAAAATATTTTAAT
* *
61911456 TTCAAAATATAATTTAAA
1 AT-AAAATAT--TTTAAT
61911474 ATAAAATATTTTAAT
1 ATAAAATATTTTAAT
61911489 ATAA
1 ATAA
61911493 TTAATATAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
14 1 0.03
15 15 0.52
17 7 0.24
18 6 0.21
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (15 bp):
ATAAAATATTTTAAT
Found at i:61911507 original size:15 final size:15
Alignment explanation
Indices: 61911489--61911521 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
61911479 ATATTTTAAT
61911489 ATAATTA-ATATAAAA
1 ATAATTATAT-TAAAA
61911504 ATAATTATATTAAAA
1 ATAATTATATTAAAA
61911519 ATA
1 ATA
61911522 TGATTAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 15 0.88
16 2 0.12
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (15 bp):
ATAATTATATTAAAA
Found at i:61911608 original size:15 final size:15
Alignment explanation
Indices: 61911588--61911619 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
61911578 TTAAAATATG
61911588 ATTAAATTATTTTTT
1 ATTAAATTATTTTTT
61911603 ATTAAATTATTTTTT
1 ATTAAATTATTTTTT
61911618 AT
1 AT
61911620 AATAATCCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
ATTAAATTATTTTTT
Found at i:61911825 original size:16 final size:16
Alignment explanation
Indices: 61911801--61911854 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
61911791 TGAATTACTG
* *
61911801 ATTACAACTCTATTAT
1 ATTATAACTCTATTCT
*
61911817 ATTATAACTCTATTCC
1 ATTATAACTCTATTCT
61911833 ATTATAACTCTATTCT
1 ATTATAACTCTATTCT
61911849 ATTATA
1 ATTATA
61911855 GCGAACCCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.46
Consensus pattern (16 bp):
ATTATAACTCTATTCT
Found at i:61912043 original size:17 final size:17
Alignment explanation
Indices: 61912021--61912060 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
61912011 CAATCAAAAC
61912021 AAAAATTAAAAAT-TATT
1 AAAAATTAAAAATAT-TT
61912038 AAAAATTAAAAATATTT
1 AAAAATTAAAAATATTT
61912055 AAAAAT
1 AAAAAT
61912061 ACTAAATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 21 0.95
18 1 0.05
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
AAAAATTAAAAATATTT
Found at i:61912098 original size:19 final size:19
Alignment explanation
Indices: 61912076--61912113 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
61912066 ATTAATATAT
61912076 CTTATAAAAATAATAAAAA
1 CTTATAAAAATAATAAAAA
* *
61912095 CTTATAAATATTATAAAAA
1 CTTATAAAAATAATAAAAA
61912114 TAAAAATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (19 bp):
CTTATAAAAATAATAAAAA
Found at i:61912120 original size:17 final size:17
Alignment explanation
Indices: 61912021--61912128 Score: 53
Period size: 17 Copynumber: 6.2 Consensus size: 17
61912011 CAATCAAAAC
61912021 AAAAATTAAAAATTATTA-
1 AAAAA-TAAAAA-TATTAT
*
61912039 AAAATTAAAAATATT-T
1 AAAAATAAAAATATTAT
* *
61912055 AAAAATACTAAATTAATAT
1 AAAAATA--AAAATATTAT
***
61912074 ATCTTATAAAAATA--AT
1 A-AAAATAAAAATATTAT
*
61912090 AAAAACTTATAAATATTAT
1 AAAAA--TAAAAATATTAT
*
61912109 AAAAATAAAAATATAAT
1 AAAAATAAAAATATTAT
61912126 AAA
1 AAA
61912129 TTCTAACAAA
Statistics
Matches: 67, Mismatches: 14, Indels: 19
0.67 0.14 0.19
Matches are distributed among these distances:
15 1 0.01
16 13 0.19
17 26 0.39
18 15 0.22
19 9 0.13
20 3 0.04
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (17 bp):
AAAAATAAAAATATTAT
Found at i:61912142 original size:34 final size:34
Alignment explanation
Indices: 61912079--61912147 Score: 88
Period size: 34 Copynumber: 2.0 Consensus size: 34
61912069 AATATATCTT
*
61912079 ATAAAAATAATAAAAACTTATAAATATTATAAAA
1 ATAAAAATAATAAAAACTTATAAAAATTATAAAA
*
61912113 ATAAAAAT-ATAATAAA-TTCTAACAAATTATAAAA
1 ATAAAAATAATAA-AAACTTATAA-AAATTATAAAA
61912147 A
1 A
61912148 ATTTTAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
33 9 0.29
34 22 0.71
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (34 bp):
ATAAAAATAATAAAAACTTATAAAAATTATAAAA
Found at i:61912146 original size:53 final size:53
Alignment explanation
Indices: 61912027--61912164 Score: 133
Period size: 53 Copynumber: 2.6 Consensus size: 53
61912017 AAACAAAAAT
* * *
61912027 TAAAAATTATTAAAAATTAAAAATATT-TAAAAATACTAAATTAATATATCTTA
1 TAAAAATTA-TAAAAATTATAAATATTATAAAAATACAAAATTAATAAATCTTA
*
61912080 TAAAAATAATAAAAACTTATAAATATTATAAAAATA-AAAATATAATAAAT-TCTA
1 TAAAAATTATAAAAA-TTATAAATATTATAAAAATACAAAAT-TAATAAATCT-TA
* *
61912134 -ACAAATTATAAAAAATTTTAAA-ATTAATAAA
1 TAAAAATTAT-AAAAATTATAAATATT-ATAAA
61912165 CATATTTAAA
Statistics
Matches: 72, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
52 9 0.12
53 41 0.57
54 22 0.31
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (53 bp):
TAAAAATTATAAAAATTATAAATATTATAAAAATACAAAATTAATAAATCTTA
Found at i:61912229 original size:29 final size:30
Alignment explanation
Indices: 61912172--61912231 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
61912162 AAACATATTT
* * **
61912172 AAATTTTTAAAAGTTTATAAAAACGTAAAA
1 AAATCTTTAAAAGCTTATAAAAAAATAAAA
61912202 AAATCTTTAAAA-CTTATAAAAAAATAAAA
1 AAATCTTTAAAAGCTTATAAAAAAATAAAA
61912231 A
1 A
61912232 TCATAAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (30 bp):
AAATCTTTAAAAGCTTATAAAAAAATAAAA
Found at i:61912319 original size:30 final size:30
Alignment explanation
Indices: 61912262--61912337 Score: 93
Period size: 30 Copynumber: 2.6 Consensus size: 30
61912252 TATTTAATAT
* * *
61912262 TAAAAA-TATT-AAAATTCATATAAACTTA
1 TAAAAATTATTAAAAAATCACAAAAACTTA
61912290 TAAAAATTATTAAAAAATCACAAAAACTTA
1 TAAAAATTATTAAAAAATCACAAAAACTTA
* *
61912320 TAAATATTATAAAAAAAT
1 TAAAAATTATTAAAAAAT
61912338 TCTAATAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
28 6 0.15
29 4 0.10
30 31 0.76
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.32
Consensus pattern (30 bp):
TAAAAATTATTAAAAAATCACAAAAACTTA
Found at i:61912333 original size:19 final size:19
Alignment explanation
Indices: 61912311--61912424 Score: 52
Period size: 20 Copynumber: 5.6 Consensus size: 19
61912301 AAAAAATCAC
61912311 AAAAACTTATAAATATTAT
1 AAAAACTTATAAATATTAT
* * *
61912330 AAAAAAATTCTAATAAATTA-
1 -AAAAACTTATAA-ATATTAT
61912350 ATAAAACTTTATGAAATTATTA-
1 A-AAAAC-TTAT-AAA-TATTAT
* * * *
61912372 AAATATTTTTAAAATCTTAT
1 AAAAACTTAT-AAATATTAT
* *
61912392 AAAATATTTATAAACATTCAT
1 AAAA-ACTTATAAATATT-AT
61912413 AAAAACTTATAA
1 AAAAACTTATAA
61912425 TAAATAATAA
Statistics
Matches: 70, Mismatches: 16, Indels: 16
0.69 0.16 0.16
Matches are distributed among these distances:
19 5 0.07
20 35 0.50
21 23 0.33
22 7 0.10
ACGTcount: A:0.55, C:0.06, G:0.01, T:0.38
Consensus pattern (19 bp):
AAAAACTTATAAATATTAT
Found at i:61912414 original size:21 final size:21
Alignment explanation
Indices: 61912370--61912424 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
61912360 ATGAAATTAT
* *
61912370 TAAAATATTTTTAAAATCTTA
1 TAAAATATTTATAAAATCTCA
61912391 TAAAATATTTATAAACAT-TCA
1 TAAAATATTTATAAA-ATCTCA
*
61912412 TAAAA-ACTTATAA
1 TAAAATATTTATAA
61912425 TAAATAATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.23
21 21 0.70
22 2 0.07
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (21 bp):
TAAAATATTTATAAAATCTCA
Found at i:61913093 original size:40 final size:39
Alignment explanation
Indices: 61913040--61913117 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 39
61913030 TTATGATCTT
61913040 TTTTTTATAATTTTTTATAAG-TTTATGGCAATTTTAATAA
1 TTTTTTATAATTTTTTATAAGTTTTA-GG-AATTTTAATAA
*
61913080 TTTTTTATGATTTTTTATAAGTTTTAGGAATTTTAATA
1 TTTTTTATAATTTTTTATAAGTTTTAGGAATTTTAATA
61913118 TGTTTTGATA
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
39 10 0.28
40 22 0.61
41 4 0.11
ACGTcount: A:0.31, C:0.01, G:0.09, T:0.59
Consensus pattern (39 bp):
TTTTTTATAATTTTTTATAAGTTTTAGGAATTTTAATAA
Found at i:61913104 original size:11 final size:10
Alignment explanation
Indices: 61913040--61913104 Score: 51
Period size: 10 Copynumber: 6.5 Consensus size: 10
61913030 TTATGATCTT
61913040 TTTTTTATAA
1 TTTTTTATAA
61913050 TTTTTTATAA
1 TTTTTTATAA
* ***
61913060 GTTTATGGCAA
1 -TTTTTTATAA
*
61913071 -TTTTAATAA
1 TTTTTTATAA
*
61913080 TTTTTTATGA
1 TTTTTTATAA
61913090 TTTTTTATAA
1 TTTTTTATAA
*
61913100 GTTTT
1 TTTTT
61913105 AGGAATTTTA
Statistics
Matches: 41, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
9 5 0.12
10 30 0.73
11 6 0.15
ACGTcount: A:0.28, C:0.02, G:0.08, T:0.63
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:61913113 original size:19 final size:19
Alignment explanation
Indices: 61913051--61913123 Score: 58
Period size: 19 Copynumber: 3.7 Consensus size: 19
61913041 TTTTTATAAT
*
61913051 TTTTTATAAG-TTTATGGCAA
1 TTTTAATAAGTTTTA-GG-AA
* * *
61913071 TTTTAATAATTTTTTATGAT
1 TTTTAATAA-GTTTTAGGAA
*
61913091 TTTTTATAAGTTTTAGGAA
1 TTTTAATAAGTTTTAGGAA
*
61913110 TTTTAATATGTTTT
1 TTTTAATAAGTTTT
61913124 GATAAAATTA
Statistics
Matches: 41, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
19 19 0.46
20 17 0.41
21 1 0.02
22 4 0.10
ACGTcount: A:0.29, C:0.01, G:0.11, T:0.59
Consensus pattern (19 bp):
TTTTAATAAGTTTTAGGAA
Found at i:61913438 original size:26 final size:26
Alignment explanation
Indices: 61913409--61913465 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
61913399 CACGAAACAG
*
61913409 ATCATCAGCA-CTCTGCTTGCTTTTTT
1 ATCATC-GCATCTCTACTTGCTTTTTT
* *
61913435 ATCAATCTCATTTCTACTTGCTTTTTT
1 ATC-ATCGCATCTCTACTTGCTTTTTT
61913462 ATCA
1 ATCA
61913466 CAGTAAGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.19, C:0.25, G:0.07, T:0.49
Consensus pattern (26 bp):
ATCATCGCATCTCTACTTGCTTTTTT
Found at i:61916944 original size:19 final size:19
Alignment explanation
Indices: 61916920--61916958 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
61916910 TAGGAGCCCT
61916920 ATGCCATCATTCTCCACTC
1 ATGCCATCATTCTCCACTC
61916939 ATGCCATCATTCTCCACTC
1 ATGCCATCATTCTCCACTC
61916958 A
1 A
61916959 AGGCTGTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.23, C:0.41, G:0.05, T:0.31
Consensus pattern (19 bp):
ATGCCATCATTCTCCACTC
Found at i:61919899 original size:107 final size:108
Alignment explanation
Indices: 61919730--61919944 Score: 396
Period size: 107 Copynumber: 2.0 Consensus size: 108
61919720 AAAAACACGA
61919730 CAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATAAAATTTTGTTAGAAATTTTATTATTTA
1 CAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATAAAATTTTGTTAGAAATTTTATTATTTA
61919795 AAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAAT
66 AAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAAT
*
61919838 CAAAAATTTTAT-AGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTTA
1 CAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATAAAATTTTGTTAGAAATTTTATTATTTA
* *
61919902 AAATTTATTCTAACTTAACATATCATTGTTTTGTTAAACTAAT
66 AAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAAT
61919945 TTTTTGTTTA
Statistics
Matches: 104, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
107 92 0.88
108 12 0.12
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.44
Consensus pattern (108 bp):
CAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATAAAATTTTGTTAGAAATTTTATTATTTA
AAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAAT
Found at i:61921881 original size:21 final size:22
Alignment explanation
Indices: 61921855--61921901 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
61921845 CTCTGCTCAA
*
61921855 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
61921876 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
61921898 ACTC
1 ACTC
61921902 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:61936245 original size:39 final size:40
Alignment explanation
Indices: 61936145--61936329 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
61936135 TTGAATGATG
* * *
61936145 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
61936184 ATCCGGACTAAAAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
61936225 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
61936264 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
61936303 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
61936330 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 38 0.31
40 72 0.59
41 12 0.10
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:61936281 original size:79 final size:81
Alignment explanation
Indices: 61936145--61936329 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
61936135 TTGAATGATG
* *
61936145 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAAATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAAATCCGAAGGCAAT
61936209 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * * * *
61936224 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGG-GTTAAGTCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAAAT-CCGAAGGCA
*
61936286 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
61936304 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
61936330 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 4 0.04
79 53 0.59
80 33 0.37
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAAATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:61936351 original size:79 final size:79
Alignment explanation
Indices: 61936194--61936362 Score: 202
Period size: 79 Copynumber: 2.2 Consensus size: 79
61936184 ATCCGGACTA
* * **
61936194 AAAT-CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTT
1 AAATCCCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTT
61936258 ACTAAATCCGGGTT
66 ACTAAATCCGGGTT
* * *
61936272 AAGTCCCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 AAATCCCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAG
*
61936336 -TAGCTATATCC-GGTT
64 TTA-CTAAATCCGGGTT
*
61936351 AAATTCCGAAGG
1 AAATCCCGAAGG
61936363 TACGTGATTT
Statistics
Matches: 77, Mismatches: 10, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
78 5 0.06
79 47 0.61
80 25 0.32
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
AAATCCCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTT
ACTAAATCCGGGTT
Found at i:61945101 original size:19 final size:19
Alignment explanation
Indices: 61945077--61945114 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
61945067 TGTCTAATTA
61945077 GGTTTATGAAATTTGATTT
1 GGTTTATGAAATTTGATTT
*
61945096 GGTTTATGAATTTTGATTT
1 GGTTTATGAAATTTGATTT
61945115 AGGATTAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (19 bp):
GGTTTATGAAATTTGATTT
Found at i:61949656 original size:26 final size:26
Alignment explanation
Indices: 61949600--61949650 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
61949590 AGCCATATTG
* *
61949600 GCTCACAAAGAGCCTTTAATCGAGAA
1 GCTCACAAAGAGCCTATAATCAAGAA
61949626 GCTCACAAAGAGCC-ATATATCAAGA
1 GCTCACAAAGAGCCTATA-ATCAAGA
61949651 CACTCATAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 2 0.09
26 20 0.91
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.18
Consensus pattern (26 bp):
GCTCACAAAGAGCCTATAATCAAGAA
Found at i:61960868 original size:25 final size:25
Alignment explanation
Indices: 61960840--61960947 Score: 87
Period size: 25 Copynumber: 4.4 Consensus size: 25
61960830 AGCTCTTTCA
61960840 AGCCATATAACAGGAAGCTCATGTG
1 AGCCATATAACAGGAAGCTCATGTG
* * **
61960865 AGCCATGTAAC-GAGAAGCTTATCCG
1 AGCCATATAACAG-GAAGCTCATGTG
* ** **
61960890 GGCTGTATAACAGGAAGCTCATAAG
1 AGCCATATAACAGGAAGCTCATGTG
* *
61960915 AGCCATAT-TCGGGAAGCTCATGTG
1 AGCCATATAACAGGAAGCTCATGTG
61960939 AGCCA-ATAA
1 AGCCATATAA
61960948 TGGGTAGCTC
Statistics
Matches: 61, Mismatches: 19, Indels: 7
0.70 0.22 0.08
Matches are distributed among these distances:
23 2 0.03
24 18 0.30
25 40 0.66
26 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.20
Consensus pattern (25 bp):
AGCCATATAACAGGAAGCTCATGTG
Found at i:61960931 original size:24 final size:24
Alignment explanation
Indices: 61960902--61961089 Score: 93
Period size: 24 Copynumber: 7.6 Consensus size: 24
61960892 CTGTATAACA
*
61960902 GGAAGCTCATAAGAGCCATATTCG
1 GGAAGCTCATAAGAGCCATAATCG
**
61960926 GGAAGCTCATGTGAGCCAATAAT-G
1 GGAAGCTCATAAGAGCC-ATAATCG
* *
61960950 GGTAGCTCCA-AAGAGCCATTAATCA
1 GGAAGCT-CATAAGAGCCA-TAATCG
* *
61960975 GGAAGCTC-TGAATAGCTAT-ATACG
1 GGAAGCTCAT-AAGAGCCATAAT-CG
* * *
61960999 GAGAAGTTCA-AGCGAGCCAT-ATCA
1 G-GAAGCTCATA-AGAGCCATAATCG
* *
61961023 GGAAGCTCACAAAGAGCCTTTAATCG
1 GGAAGCTCA-TAAGAGCC-ATAATCG
*
61961049 AGAAGCTCATGAAGAGCCATATATCAG
1 GGAAGCTCAT-AAGAGCCATA-ATC-G
*
61961076 GGCA-CTCATAAGAG
1 GGAAGCTCATAAGAG
61961090 TTGTGGTGTG
Statistics
Matches: 122, Mismatches: 25, Indels: 33
0.68 0.14 0.18
Matches are distributed among these distances:
23 10 0.08
24 43 0.35
25 40 0.33
26 26 0.21
27 3 0.02
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (24 bp):
GGAAGCTCATAAGAGCCATAATCG
Found at i:61961560 original size:21 final size:21
Alignment explanation
Indices: 61961536--61961577 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
61961526 TAAATTTAAC
*
61961536 TCAATTTAATACAATTCATAT
1 TCAATTCAATACAATTCATAT
*
61961557 TCAATTCAATTCAATTCATAT
1 TCAATTCAATACAATTCATAT
61961578 CTTAGGCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.43
Consensus pattern (21 bp):
TCAATTCAATACAATTCATAT
Found at i:61961565 original size:5 final size:5
Alignment explanation
Indices: 61961536--61961574 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
61961526 TAAATTTAAC
* *
61961536 TCAAT TTAAT ACAAT TCATAT TCAAT TCAAT TCAAT TCA
1 TCAAT TCAAT TCAAT TCA-AT TCAAT TCAAT TCAAT TCA
61961575 TATCTTAGGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (5 bp):
TCAAT
Found at i:61965210 original size:16 final size:16
Alignment explanation
Indices: 61965189--61965221 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
61965179 TCCAAACGTA
61965189 TCATGAATTAATAAAG
1 TCATGAATTAATAAAG
61965205 TCATGAATTAATAAAG
1 TCATGAATTAATAAAG
61965221 T
1 T
61965222 AACTCTCATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.48, C:0.06, G:0.12, T:0.33
Consensus pattern (16 bp):
TCATGAATTAATAAAG
Found at i:61966750 original size:23 final size:25
Alignment explanation
Indices: 61966724--61966770 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
61966714 TATCATTCAT
*
61966724 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
61966747 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
61966771 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:61967091 original size:46 final size:46
Alignment explanation
Indices: 61967031--61967377 Score: 449
Period size: 46 Copynumber: 7.9 Consensus size: 46
61967021 TTTGACGTGA
* * * * * *
61967031 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
61967077 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
61967123 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
61967169 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
61967215 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
61967253 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
61967299 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
61967337 TGCCATGGTATCTTTCAACCATGGTATTACACATTTCATAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
61967378 TAGAGAGCAG
Statistics
Matches: 270, Mismatches: 14, Indels: 34
0.85 0.04 0.11
Matches are distributed among these distances:
38 65 0.24
39 2 0.01
40 6 0.02
41 2 0.01
43 2 0.01
44 6 0.02
45 6 0.02
46 181 0.67
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:61967147 original size:92 final size:88
Alignment explanation
Indices: 61967031--61967377 Score: 458
Period size: 84 Copynumber: 3.9 Consensus size: 88
61967021 TTTGACGTGA
* * * *
61967031 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-CA--TTCT-TCAGGTTGCCATGGTATCTTTCAAC
** * * *
61967096 CATGGTCTTATTCTTTTCATGTCACGT
62 CATGGTCTTACACATTTCATATCAGGT
61967123 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-CAT-TC-T-TCAGGTTGCCATGGTATCTTTCAAC
61967188 CATGGTCTTACACATTTCATATCAGGT
62 CATGGTCTTACACATTTCATATCAGGT
*
61967215 TGCCATGGTATCTTTCAACCATGGTCTTA-CA--C-ACAGGTTGCCATGGTATCTTTCAACCATG
1 TGCCATGGTATCTTTCAACCATGGTCTTACCATTCTTCAGGTTGCCATGGTATCTTTCAACCATG
61967276 GTCTTACACATTTCATATCAGGT
66 GTCTTACACATTTCATATCAGGT
*
61967299 TGCCATGGTATCTTTCAACCATGGTCTTA-CA--C-ACAGGTTGCCATGGTATCTTTCAACCATG
1 TGCCATGGTATCTTTCAACCATGGTCTTACCATTCTTCAGGTTGCCATGGTATCTTTCAACCATG
*
61967360 GTATTACACATTTCATAT
66 GTCTTACACATTTCATAT
61967378 TAGAGAGCAG
Statistics
Matches: 240, Mismatches: 13, Indels: 12
0.91 0.05 0.05
Matches are distributed among these distances:
84 129 0.54
87 1 0.00
90 3 0.01
91 2 0.01
92 105 0.44
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (88 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACCATTCTTCAGGTTGCCATGGTATCTTTCAACCATG
GTCTTACACATTTCATATCAGGT
Found at i:61967261 original size:38 final size:38
Alignment explanation
Indices: 61967210--61967369 Score: 239
Period size: 38 Copynumber: 4.0 Consensus size: 38
61967200 CATTTCATAT
61967210 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
61967248 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A
61967293 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 -CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
*
61967332 CAGGTTGCCATGGTATCTTTCAACCATGGTATTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
61967370 TTTCATATTA
Statistics
Matches: 113, Mismatches: 1, Indels: 16
0.87 0.01 0.12
Matches are distributed among these distances:
38 70 0.62
39 1 0.01
40 3 0.03
41 1 0.01
43 1 0.01
44 3 0.03
45 1 0.01
46 33 0.29
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.33
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:61979942 original size:32 final size:32
Alignment explanation
Indices: 61979906--61979985 Score: 124
Period size: 32 Copynumber: 2.5 Consensus size: 32
61979896 CAATTGAATC
*
61979906 TTCGTACATACATGTACCATATTGTACCAATT
1 TTCGTACATACCTGTACCATATTGTACCAATT
* *
61979938 TTCGTACATTCCTGTACCATATTGTTCCAATT
1 TTCGTACATACCTGTACCATATTGTACCAATT
*
61979970 TTCGTAGATACCTGTA
1 TTCGTACATACCTGTA
61979986 TCATCTCGTA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.26, C:0.23, G:0.11, T:0.40
Consensus pattern (32 bp):
TTCGTACATACCTGTACCATATTGTACCAATT
Found at i:61980120 original size:56 final size:56
Alignment explanation
Indices: 61980043--61980204 Score: 190
Period size: 56 Copynumber: 2.9 Consensus size: 56
61980033 TGAATATTCA
** *
61980043 ATGTATCGCACACT-AGATGCCATACCCGATACCTT-GCACACTAAGTTTCGTTCTGG
1 ATGTATCGCACACTAAG-TGCCAT-CCCGATACCTTCGCACACTAAGTGCCATTCTGG
*
61980099 ATGTTTCGCACACTAAGTGCCATCCTC-ATTA-CTTCGCACACTAAGTGCCATTCTGG
1 ATGTATCGCACACTAAGTGCCATCC-CGA-TACCTTCGCACACTAAGTGCCATTCTGG
**
61980155 ATGTATCGCACACTAAGTGCCATCCCCGATA-CTTCGCACGTTAAGTGCCA
1 ATGTATCGCACACTAAGTGCCAT-CCCGATACCTTCGCACACTAAGTGCCA
61980205 CATATAATTA
Statistics
Matches: 93, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
55 6 0.06
56 82 0.88
57 5 0.05
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (56 bp):
ATGTATCGCACACTAAGTGCCATCCCGATACCTTCGCACACTAAGTGCCATTCTGG
Found at i:61980134 original size:28 final size:28
Alignment explanation
Indices: 61980103--61980204 Score: 111
Period size: 28 Copynumber: 3.6 Consensus size: 28
61980093 TTCTGGATGT
61980103 TTCGCACACTAAGTGCCATCCTCATTAC
1 TTCGCACACTAAGTGCCATCCTCATTAC
* *
61980131 TTCGCACACTAAGTGCCATTCTGGATGTA-
1 TTCGCACACTAAGTGCCATCCT-CAT-TAC
*
61980160 -TCGCACACTAAGTGCCATCCCCGA-TAC
1 TTCGCACACTAAGTGCCATCCTC-ATTAC
**
61980187 TTCGCACGTTAAGTGCCA
1 TTCGCACACTAAGTGCCA
61980205 CATATAATTA
Statistics
Matches: 62, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
26 2 0.03
28 56 0.90
29 2 0.03
30 2 0.03
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26
Consensus pattern (28 bp):
TTCGCACACTAAGTGCCATCCTCATTAC
Found at i:61988952 original size:39 final size:40
Alignment explanation
Indices: 61988898--61988974 Score: 138
Period size: 39 Copynumber: 1.9 Consensus size: 40
61988888 GTGAGATGGT
*
61988898 GGTGGTGTGACATCTTTATA-TCAGGTTCAACGACCGAAC
1 GGTGGTGTGACATCTTTATATTCAAGTTCAACGACCGAAC
61988937 GGTGGTGTGACATCTTTATATTCAAGTTCAACGACCGA
1 GGTGGTGTGACATCTTTATATTCAAGTTCAACGACCGA
61988975 GCCAAGTATA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
39 20 0.56
40 16 0.44
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (40 bp):
GGTGGTGTGACATCTTTATATTCAAGTTCAACGACCGAAC
Found at i:61991817 original size:18 final size:18
Alignment explanation
Indices: 61991783--61991817 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
61991773 GTTTATGGCT
* *
61991783 CCAAAAACACTTTTAGCC
1 CCAAAAACACATATAGCC
61991801 CCAAAAACACATATAGC
1 CCAAAAACACATATAGC
61991818 TTTGATTGTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.31, G:0.06, T:0.17
Consensus pattern (18 bp):
CCAAAAACACATATAGCC
Found at i:62001084 original size:31 final size:31
Alignment explanation
Indices: 62001046--62001110 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
62001036 GCTTACACTG
62001046 TTTCCTTTATGTGAAACTAGACTCATTAAGC
1 TTTCCTTTATGTGAAACTAGACTCATTAAGC
62001077 TTTCCTTTATGTGAAACTAGACTCATTAAGC
1 TTTCCTTTATGTGAAACTAGACTCATTAAGC
62001108 TTT
1 TTT
62001111 AATTTCATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.28, C:0.18, G:0.12, T:0.42
Consensus pattern (31 bp):
TTTCCTTTATGTGAAACTAGACTCATTAAGC
Found at i:62004354 original size:49 final size:47
Alignment explanation
Indices: 62004168--62004631 Score: 761
Period size: 47 Copynumber: 9.7 Consensus size: 47
62004158 TTAGGATTCT
* * *
62004168 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
62004215 ATGTGATGAATGTGAAAGTGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62004262 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62004309 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
62004358 ATGTGATGAATGTGAAAGTGTATATATATGTGGA-AAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGT-GATAAGGCCTAATGGCCG
62004407 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62004454 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
62004503 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
62004550 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
62004597 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
62004632 TCCCGAAGGG
Statistics
Matches: 402, Mismatches: 8, Indels: 14
0.95 0.02 0.03
Matches are distributed among these distances:
46 3 0.01
47 257 0.64
49 140 0.35
50 2 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:62004383 original size:96 final size:94
Alignment explanation
Indices: 62004168--62004631 Score: 761
Period size: 96 Copynumber: 4.9 Consensus size: 94
62004158 TTAGGATTCT
* * *
62004168 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
62004232 GTGCATATATGTGATAAGGCCTAATGGCCG
65 GTGTATATATGTGATAAGGCCTAATGGCCG
62004262 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
62004327 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TG--TATATATGTGATAAGGCCTAATGGCCG
62004358 ATGTGATGAATGTGAAAGTGTATATATATGTGGA-AAGGCCTAATGGCCGATGTGATGAATGTGA
1 ATGTGATGAATGTGAAAGTG--TATATATGT-GATAAGGCCTAATGGCCGATGTGATGAATGTGA
62004422 AAGTGTATATATGTGATAAGGCCTAATGGCCG
63 AAGTGTATATATGTGATAAGGCCTAATGGCCG
62004454 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62004519 AGTGTATATATGTGATAAGGCCTAATGGCCG
64 AGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
62004550 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAACGTGATGGATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
62004615 TGTATAAATGTGATAAG
66 TGTATATATGTGATAAG
62004632 TCCCGAAGGG
Statistics
Matches: 354, Mismatches: 9, Indels: 14
0.94 0.02 0.04
Matches are distributed among these distances:
93 1 0.00
94 119 0.34
95 2 0.01
96 186 0.53
98 44 0.12
99 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (94 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCG
Found at i:62006368 original size:40 final size:40
Alignment explanation
Indices: 62006045--62006356 Score: 516
Period size: 40 Copynumber: 7.8 Consensus size: 40
62006035 GAGAATTGAG
62006045 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
62006085 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
62006125 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
**
62006165 AGTGATATATCCGGGCTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
62006205 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
62006245 AGTGATATATCCGGGTTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
62006285 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
62006325 GGTGTTATATCCGGGCTAGGTCTCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
62006357 ATCATGCTGG
Statistics
Matches: 254, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 254 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:62010301 original size:47 final size:47
Alignment explanation
Indices: 62010250--62010715 Score: 772
Period size: 47 Copynumber: 9.7 Consensus size: 47
62010240 TTAGGATTCT
* * *
62010250 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
62010297 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62010344 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62010391 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
62010440 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
62010489 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62010536 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
62010585 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* *
62010634 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
62010681 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
62010716 TCCCGAAGGG
Statistics
Matches: 406, Mismatches: 8, Indels: 10
0.96 0.02 0.02
Matches are distributed among these distances:
46 1 0.00
47 213 0.52
49 192 0.47
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:62010325 original size:25 final size:25
Alignment explanation
Indices: 62010297--62010375 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
62010287 CTAATGGCCG
62010297 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
62010322 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
62010344 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
62010369 ATGTGAT
1 ATGTGAT
62010376 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:62010436 original size:49 final size:49
Alignment explanation
Indices: 62010271--62010715 Score: 775
Period size: 49 Copynumber: 9.3 Consensus size: 49
62010261 GTGAACATGC
*
62010271 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
62010318 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
62010365 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
62010414 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
62010463 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
62010510 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
62010559 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
62010608 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * *
62010655 ATATATGTGATAAGGCCTAATAGCCAACGTGATGGATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
62010704 A-A-ATGTGATAAG
1 ATATATGTGATAAG
62010716 TCCCGAAGGG
Statistics
Matches: 387, Mismatches: 5, Indels: 12
0.96 0.01 0.03
Matches are distributed among these distances:
47 192 0.50
48 1 0.00
49 194 0.50
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:62010518 original size:145 final size:145
Alignment explanation
Indices: 62010271--62010715 Score: 817
Period size: 145 Copynumber: 3.1 Consensus size: 145
62010261 GTGAACATGC
*
62010271 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
62010334 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
66 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
62010399 AATGTGAAAGTGTAT
131 AATGTGAAAGTGTAT
62010414 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
62010479 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
66 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
62010544 AATGTGAAAGTGTAT
131 AATGTGAAAGTGTAT
62010559 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
* * *
62010624 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAACGTGATG
66 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
62010689 GATGTGAAAGTGTAT
131 AATGTGAAAGTGTAT
62010704 A-A-ATGTGATAAG
1 ATATATGTGATAAG
62010716 TCCCGAAGGG
Statistics
Matches: 295, Mismatches: 5, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
143 55 0.19
144 1 0.00
145 239 0.81
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (145 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
AATGTGAAAGTGTAT
Found at i:62010889 original size:37 final size:37
Alignment explanation
Indices: 62010833--62010911 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
62010823 CCGAGCTCTA
* * * *
62010833 AAGACCCGATGACTACGTGTGGGGATTTTGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
62010870 AAGATCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
62010907 AAGAC
1 AAGAC
62010912 TTCGTAATAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:62014923 original size:69 final size:69
Alignment explanation
Indices: 62014807--62014948 Score: 257
Period size: 69 Copynumber: 2.1 Consensus size: 69
62014797 AGGGCTCACA
62014807 ATCACTTTAAGAGATGGATTACTAAAGGTAGTAGCTGCTGTACTATTTAAATAGAAGTAAAGTTA
1 ATCACTTTAAGAGATGGATTACTAAAGGTAGTAGCTGCTGTACTATTTAAATAGAAGTAAAGTTA
62014872 TTGG
66 TTGG
* * *
62014876 ATCATTTTAAGAGATGGATTACTAAATGTAGTAGCTGCTGTACTATTTAAATAGAAGTAGAGTTA
1 ATCACTTTAAGAGATGGATTACTAAAGGTAGTAGCTGCTGTACTATTTAAATAGAAGTAAAGTTA
62014941 TTGG
66 TTGG
62014945 ATCA
1 ATCA
62014949 AAATCAACAG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.35
Consensus pattern (69 bp):
ATCACTTTAAGAGATGGATTACTAAAGGTAGTAGCTGCTGTACTATTTAAATAGAAGTAAAGTTA
TTGG
Found at i:62021699 original size:16 final size:16
Alignment explanation
Indices: 62021678--62021708 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
62021668 AATAAAAACT
62021678 AACTAAATTAACTAAC
1 AACTAAATTAACTAAC
62021694 AACTAAATTAACTAA
1 AACTAAATTAACTAA
62021709 AAAACCACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.58, C:0.16, G:0.00, T:0.26
Consensus pattern (16 bp):
AACTAAATTAACTAAC
Found at i:62024721 original size:14 final size:14
Alignment explanation
Indices: 62024691--62024720 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
62024681 TTGATGGATC
62024691 AATAGAAAATAAAA
1 AATAGAAAATAAAA
62024705 AATATGAAAATAAAA
1 AATA-GAAAATAAAA
62024720 A
1 A
62024721 TTTATAATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.17
Consensus pattern (14 bp):
AATAGAAAATAAAA
Found at i:62028218 original size:47 final size:47
Alignment explanation
Indices: 62028125--62028495 Score: 643
Period size: 47 Copynumber: 7.8 Consensus size: 47
62028115 ATTTAGGATT
62028125 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
62028174 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
62028221 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
62028268 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
62028317 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
62028366 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
*
62028413 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
* * * *
62028460 CAACGTGATGGATGTGAAAGTGTATAAATGTGATAA
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAA
62028496 ATCCCGAAGG
Statistics
Matches: 315, Mismatches: 5, Indels: 6
0.97 0.02 0.02
Matches are distributed among these distances:
47 197 0.63
49 118 0.37
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
Found at i:62028414 original size:192 final size:190
Alignment explanation
Indices: 62028125--62028495 Score: 688
Period size: 192 Copynumber: 1.9 Consensus size: 190
62028115 ATTTAGGATT
62028125 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
62028190 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
66 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
* * *
62028255 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
131 AAGGCCTAATAGCCAACGTGATGAATGTGAAAGTGTATA-A-ATGTGATAAGGCCTAATGGC
62028317 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
62028382 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
66 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
*
62028447 AAGGCCTAATAGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAA
131 AAGGCCTAATAGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATAA
62028496 ATCCCGAAGG
Statistics
Matches: 175, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
190 9 0.05
191 1 0.01
192 165 0.94
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (190 bp):
CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
AAGGCCTAATAGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGC
Found at i:62028671 original size:37 final size:37
Alignment explanation
Indices: 62028615--62028693 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
62028605 CCGAGCTCTA
* * *
62028615 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
62028652 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
62028689 AAGAC
1 AAGAC
62028694 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:62029950 original size:39 final size:39
Alignment explanation
Indices: 62029907--62030254 Score: 545
Period size: 40 Copynumber: 8.8 Consensus size: 39
62029897 GAGAATTGAG
62029907 AGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCT
62029946 AGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCT
62029985 AGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCT
62030024 AGTGATGTATCC-GGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTC-CGAAGAGCATTCGTGCT
*
62030063 AGTAATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTC-CGAAGAGCATTCGTGCT
62030103 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTC-CGAAGAGCATTCGTGCT
*
62030143 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAG-TCCGAAGAGCATTCGTGCT
* * **
62030183 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCT-AAGTCCGAAGAGCATTCGTGCT
* * * *
62030223 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGT-CCGAAGAGCA
62030255 ATCATGCTGG
Statistics
Matches: 290, Mismatches: 14, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
38 9 0.03
39 119 0.41
40 158 0.54
41 4 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (39 bp):
AGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCT
Found at i:62030471 original size:25 final size:25
Alignment explanation
Indices: 62030430--62030481 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
62030420 TGTGTAATAA
62030430 TGAATGAATAAGAGCACTATGTGTG
1 TGAATGAATAAGAGCACTATGTGTG
* *
62030455 TGAATG-ATTAGAGGCACTGTGTGTG
1 TGAATGAATAAGA-GCACTATGTGTG
62030480 TG
1 TG
62030482 CGAATTCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.31
Consensus pattern (25 bp):
TGAATGAATAAGAGCACTATGTGTG
Found at i:62034154 original size:49 final size:49
Alignment explanation
Indices: 62034101--62034424 Score: 556
Period size: 47 Copynumber: 6.8 Consensus size: 49
62034091 ATTTAGGATT
62034101 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
62034150 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
62034197 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
62034246 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
62034295 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
*
62034342 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGC
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
* * *
62034389 CAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAA
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
62034425 ATCCCGAAGG
Statistics
Matches: 267, Mismatches: 4, Indels: 10
0.95 0.01 0.04
Matches are distributed among these distances:
47 146 0.55
48 1 0.00
49 120 0.45
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
Found at i:62034205 original size:96 final size:96
Alignment explanation
Indices: 62034101--62034424 Score: 566
Period size: 96 Copynumber: 3.4 Consensus size: 96
62034091 ATTTAGGATT
62034101 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
62034166 AAAGTGTATATATGTGATAAGGCCTAATGGC
66 AAAGTGTATATATGTGATAAGGCCTAATGGC
62034197 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
62034262 AAAGTGTATATATATGTGATAAGGCCTAATGGC
66 AAAGTG--TATATATGTGATAAGGCCTAATGGC
62034295 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
62034358 AAAGTGTATATATGTGATAAGGCCTAATAGC
66 AAAGTGTATATATGTGATAAGGCCTAATGGC
* * *
62034389 CAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAA
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
62034425 ATCCCGAAGG
Statistics
Matches: 220, Mismatches: 4, Indels: 10
0.94 0.02 0.04
Matches are distributed among these distances:
94 52 0.24
95 1 0.00
96 120 0.55
98 47 0.21
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
AAAGTGTATATATGTGATAAGGCCTAATGGC
Found at i:62034600 original size:37 final size:37
Alignment explanation
Indices: 62034544--62034622 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
62034534 CCGAGCTCTA
* * *
62034544 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
62034581 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
62034618 AAGAC
1 AAGAC
62034623 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:62036237 original size:40 final size:40
Alignment explanation
Indices: 62035836--62036225 Score: 586
Period size: 40 Copynumber: 9.8 Consensus size: 40
62035826 GAGAATTGAG
*
62035836 AGTGATGTATCCGGGCTATGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
62035876 AGTGATGCATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
62035916 AGTGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
62035955 AGAGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
62035994 AGTGATGTATCCAGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
62036034 AGTAATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
62036074 AGTGATGTATCTGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
62036114 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
62036154 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
62036194 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
62036226 ATCATGCTGG
Statistics
Matches: 320, Mismatches: 29, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 74 0.23
40 246 0.77
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:62036442 original size:25 final size:25
Alignment explanation
Indices: 62036401--62036452 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
62036391 TGTGTAATAA
62036401 TGAATGAATAAGAGCACTATGTGTG
1 TGAATGAATAAGAGCACTATGTGTG
* *
62036426 TGAATG-ATTAGAGGCACTGTGTGTG
1 TGAATGAATAAGA-GCACTATGTGTG
62036451 TG
1 TG
62036453 CGAATTCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.31
Consensus pattern (25 bp):
TGAATGAATAAGAGCACTATGTGTG
Found at i:62040163 original size:47 final size:47
Alignment explanation
Indices: 62040070--62040392 Score: 529
Period size: 47 Copynumber: 6.8 Consensus size: 47
62040060 ATTTAGGATT
62040070 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
62040119 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
62040166 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
62040213 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
*
62040262 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
* * * *
62040309 CGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
* * * *
62040356 CAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
62040393 TCCCGAAGGG
Statistics
Matches: 260, Mismatches: 12, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
47 191 0.73
49 69 0.27
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
Done.