Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 193 of 333
Found at i:63175592 original size:27 final size:28
Alignment explanation
Indices: 63175527--63175603 Score: 79
Period size: 27 Copynumber: 2.8 Consensus size: 28
63175517 CTTTATATAC
*
63175527 TAATAAAATAATAATAAAATATCTTATT
1 TAATTAAATAATAATAAAATATCTTATT
* * *
63175555 AAAGT-ATTAATAA-AATAATAT-TTATT
1 TAATTAAATAATAATAA-AATATCTTATT
*
63175581 TAATTAAATAATTATAAAATATC
1 TAATTAAATAATAATAAAATATC
63175604 AAAATATCTC
Statistics
Matches: 37, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
26 10 0.27
27 23 0.62
28 4 0.11
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (28 bp):
TAATTAAATAATAATAAAATATCTTATT
Found at i:63178716 original size:2 final size:2
Alignment explanation
Indices: 63178709--63178734 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
63178699 ACATGATAAA
63178709 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
63178735 TCAATTGTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:63178990 original size:35 final size:35
Alignment explanation
Indices: 63178938--63179044 Score: 160
Period size: 35 Copynumber: 3.1 Consensus size: 35
63178928 TACTCTCTGT
*
63178938 TTGGCGTGTTTCAGTTGGACTAGCTCTTGTGAGCA
1 TTGGCGTGTTTCGGTTGGACTAGCTCTTGTGAGCA
* *
63178973 TTGGTGTGTTTCGGTTGGACTAGCTCTTATGAGCA
1 TTGGCGTGTTTCGGTTGGACTAGCTCTTGTGAGCA
* * *
63179008 TTGGCATGTTTCGGTTGGACTAACTCTTGTGAACA
1 TTGGCGTGTTTCGGTTGGACTAGCTCTTGTGAGCA
63179043 TT
1 TT
63179045 TGGTGTGGCT
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 64 1.00
ACGTcount: A:0.16, C:0.16, G:0.29, T:0.39
Consensus pattern (35 bp):
TTGGCGTGTTTCGGTTGGACTAGCTCTTGTGAGCA
Found at i:63183510 original size:149 final size:150
Alignment explanation
Indices: 63183239--63183538 Score: 584
Period size: 149 Copynumber: 2.0 Consensus size: 150
63183229 CAAACACAAG
63183239 CATATTGTCCCTTTTACGAGCCCTCGAGGCCTTAGAAACGTTTTAGAAATGATTAAGGACTAAAT
1 CATATTGTCCCTTTTACGAGCCCTCGAGGCCTTAGAAACGTTTTAGAAATGATTAAGGACTAAAT
63183304 CGAAAACATATGGAACCTTAAGGAAAAAGATAAAATTTTTCACATTGCAGGGGTCACAAGGCTGT
66 CGAAAACATATGGAACCTTAAGGAAAAAGATAAAATTTTTCACATTGCAGGGGTCACAAGGCTGT
63183369 GTCCCAGCCTGTGTCTGTGC
131 GTCCCAGCCTGTGTCTGTGC
63183389 CATATTGTCCCTTTTACGAGCCCT-GAGGCCTTAGAAACGTTTTAGAAATGATTAAGGACTAAAT
1 CATATTGTCCCTTTTACGAGCCCTCGAGGCCTTAGAAACGTTTTAGAAATGATTAAGGACTAAAT
*
63183453 TGAAAACATATGGAACCTTAAGGAAAAAGATAAAATTTTTCACATTGCAGGGGTCACAAGGCTGT
66 CGAAAACATATGGAACCTTAAGGAAAAAGATAAAATTTTTCACATTGCAGGGGTCACAAGGCTGT
63183518 GTCCCAGCCTGTGTCTGTGC
131 GTCCCAGCCTGTGTCTGTGC
63183538 C
1 C
63183539 CGTGTAACTC
Statistics
Matches: 149, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
149 125 0.84
150 24 0.16
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (150 bp):
CATATTGTCCCTTTTACGAGCCCTCGAGGCCTTAGAAACGTTTTAGAAATGATTAAGGACTAAAT
CGAAAACATATGGAACCTTAAGGAAAAAGATAAAATTTTTCACATTGCAGGGGTCACAAGGCTGT
GTCCCAGCCTGTGTCTGTGC
Found at i:63185791 original size:96 final size:96
Alignment explanation
Indices: 63185623--63185806 Score: 244
Period size: 96 Copynumber: 1.9 Consensus size: 96
63185613 TACTGTTCAA
* * * * **
63185623 ACAAGCTGTCGAGTATTCACAACTAATGTTGGACCTCAACCATTGATAGGACATTCAAGACCAGT
1 ACAAGCTGTCAAGTATTCACAACTAATGCTGGAACTCAACCATAGATAGGACATTCAAGACCAAC
*
63185688 ACCCGAAACATGGTAACCTTGATCTGCTCAC
66 ACCCGAAACATGGTAACCCTGATCTGCTCAC
* * * *
63185719 ACAAGCTGTCAAGTA-TCTGCAACTAATGCTGGAACTCAGCGATAGGTAGGACATTCAAGACCAA
1 ACAAGCTGTCAAGTATTC-ACAACTAATGCTGGAACTCAACCATAGATAGGACATTCAAGACCAA
*
63185783 CACTCGAAACATGGTAACCCTGAT
65 CACCCGAAACATGGTAACCCTGAT
63185807 GACATGTCAT
Statistics
Matches: 75, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
95 2 0.03
96 73 0.97
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (96 bp):
ACAAGCTGTCAAGTATTCACAACTAATGCTGGAACTCAACCATAGATAGGACATTCAAGACCAAC
ACCCGAAACATGGTAACCCTGATCTGCTCAC
Found at i:63188059 original size:20 final size:20
Alignment explanation
Indices: 63188036--63188074 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
63188026 ATAATTTCAA
63188036 AAATAAATATATATTTTTTT
1 AAATAAATATATATTTTTTT
*
63188056 AAATAAATTTATATTTTTT
1 AAATAAATATATATTTTTT
63188075 AATTATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
AAATAAATATATATTTTTTT
Found at i:63188177 original size:15 final size:16
Alignment explanation
Indices: 63188142--63188174 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
63188132 TGTGGGAAAG
63188142 AAAT-ATATATTTCTA
1 AAATAATATATTTCTA
*
63188157 AAATAATATATTTTTA
1 AAATAATATATTTCTA
63188173 AA
1 AA
63188175 TAAATTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
AAATAATATATTTCTA
Found at i:63189191 original size:19 final size:19
Alignment explanation
Indices: 63189164--63189220 Score: 55
Period size: 19 Copynumber: 3.0 Consensus size: 19
63189154 TTTAAAAATC
*
63189164 TTTAAAAATAAAAAATAAA
1 TTTACAAATAAAAAATAAA
63189183 TTTACAAATAAATATAA-AAA
1 TTTACAAATAAA-A-AATAAA
* *
63189203 ATTACAAA-AAAATATAAA
1 TTTACAAATAAAAAATAAA
63189221 AGATTACAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
17 1 0.03
18 4 0.12
19 14 0.44
20 11 0.34
21 2 0.06
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (19 bp):
TTTACAAATAAAAAATAAA
Found at i:63189251 original size:10 final size:9
Alignment explanation
Indices: 63189199--63189273 Score: 57
Period size: 9 Copynumber: 8.3 Consensus size: 9
63189189 AATAAATATA
*
63189199 AAAAATTACA
1 AAAAATTA-T
*
63189209 AAAAAATAT
1 AAAAATTAT
*
63189218 AAAAGATTAC
1 AAAA-ATTAT
*
63189228 AAAGATTAT
1 AAAAATTAT
63189237 AAAAATTATT
1 AAAAATTA-T
63189247 AAAAA-TA-
1 AAAAATTAT
*
63189254 GAAAATTAT
1 AAAAATTAT
63189263 -AAAATTAT
1 AAAAATTAT
63189271 AAA
1 AAA
63189274 TTACAAAAAC
Statistics
Matches: 52, Mismatches: 8, Indels: 11
0.73 0.11 0.15
Matches are distributed among these distances:
7 4 0.08
8 10 0.19
9 19 0.37
10 19 0.37
ACGTcount: A:0.67, C:0.03, G:0.04, T:0.27
Consensus pattern (9 bp):
AAAAATTAT
Found at i:63189289 original size:26 final size:25
Alignment explanation
Indices: 63189255--63189321 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 25
63189245 TTAAAAATAG
*
63189255 AAAATTATAAAATTATAAA-TTACAA
1 AAAAATATAAAA-TATAAAGTTACAA
*
63189280 AAACAATATAAAA-ATAAAGTTACTA
1 AAA-AATATAAAATATAAAGTTACAA
*
63189305 AAAAATTTAAAAATATA
1 AAAAATAT-AAAATATA
63189322 TTAAAAATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
24 9 0.26
25 15 0.43
26 11 0.31
ACGTcount: A:0.66, C:0.04, G:0.01, T:0.28
Consensus pattern (25 bp):
AAAAATATAAAATATAAAGTTACAA
Found at i:63189296 original size:24 final size:23
Alignment explanation
Indices: 63189167--63189328 Score: 92
Period size: 20 Copynumber: 7.1 Consensus size: 23
63189157 AAAAATCTTT
63189167 AAAAATA-AAAAATAAATTTACAA
1 AAAAATATAAAAATAAA-TTACAA
*
63189190 ATAAATAT--AAA-AAATTACAA
1 AAAAATATAAAAATAAATTACAA
*
63189210 AAAAATAT--AAA-AGATTAC-A
1 AAAAATATAAAAATAAATTACAA
* * * *
63189229 AAGATTATAAAAAT-TATTAAAAA
1 AAAAATATAAAAATAAATT-ACAA
63189252 TAGAAAATTATAAAATTATAAATTACAA
1 -A-AAAA-TATAAAA--ATAAATTACAA
*
63189280 AAACAATATAAAAATAAAGTTACTA
1 AAA-AATATAAAAATAAA-TTACAA
* *
63189305 AAAAATTTAAAAATATATTA-AA
1 AAAAATATAAAAATAAATTACAA
63189327 AA
1 AA
63189329 TTTTTAATAT
Statistics
Matches: 110, Mismatches: 15, Indels: 29
0.71 0.10 0.19
Matches are distributed among these distances:
19 7 0.06
20 22 0.20
21 9 0.08
22 7 0.06
23 10 0.09
24 18 0.16
25 10 0.09
26 16 0.15
27 3 0.03
28 5 0.05
29 3 0.03
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (23 bp):
AAAAATATAAAAATAAATTACAA
Found at i:63191037 original size:18 final size:18
Alignment explanation
Indices: 63191014--63191049 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
63191004 AATAAGTTAG
63191014 TCCAAAGATTAATTCATT
1 TCCAAAGATTAATTCATT
63191032 TCCAAAGATTAATTCATT
1 TCCAAAGATTAATTCATT
63191050 GTTTGACATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.17, G:0.06, T:0.39
Consensus pattern (18 bp):
TCCAAAGATTAATTCATT
Found at i:63196700 original size:18 final size:19
Alignment explanation
Indices: 63196679--63196722 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
63196669 ATAATTTCTA
63196679 ATAATTTTATAACA-TTTT
1 ATAATTTTATAACATTTTT
*
63196697 ATAA-TTTCTAACATTTTT
1 ATAATTTTATAACATTTTT
63196715 ATAATTTT
1 ATAATTTT
63196723 TTCAAATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 8 0.35
18 12 0.52
19 3 0.13
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (19 bp):
ATAATTTTATAACATTTTT
Found at i:63196724 original size:28 final size:28
Alignment explanation
Indices: 63196653--63196724 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
63196643 TTTTTTTACT
* *
63196653 ATTTTTACAATATTTTATAATTTCTAAT
1 ATTTTTATAATATTTTATAATTTCTAAC
* *
63196681 AATTTTATAACATTTTATAATTTCTAAC
1 ATTTTTATAATATTTTATAATTTCTAAC
*
63196709 ATTTTTATAATTTTTT
1 ATTTTTATAATATTTT
63196725 CAAATTTAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.58
Consensus pattern (28 bp):
ATTTTTATAATATTTTATAATTTCTAAC
Found at i:63196810 original size:21 final size:23
Alignment explanation
Indices: 63196786--63196835 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
63196776 TATAATTTTA
* *
63196786 TTTATAT-ATATATTTT-TAATT
1 TTTATATAATAAATTTTATAAAT
63196807 TTTA-ATAATAAATTTTATAAAT
1 TTTATATAATAAATTTTATAAAT
63196829 TTTATAT
1 TTTATAT
63196836 TCATAAAGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 2 0.08
21 12 0.50
22 8 0.33
23 2 0.08
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (23 bp):
TTTATATAATAAATTTTATAAAT
Found at i:63197115 original size:38 final size:38
Alignment explanation
Indices: 63197064--63197142 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
63197054 TTGATATACT
*
63197064 TCAAGAATTAAAGTGTGAATTAAGCCTTATATTAAACA
1 TCAAGAACTAAAGTGTGAATTAAGCCTTATATTAAACA
63197102 TCAAGAACTAAAGTGTGAATTAAGCCTTATATTAAACA
1 TCAAGAACTAAAGTGTGAATTAAGCCTTATATTAAACA
63197140 TCA
1 TCA
63197143 TCTAAATTAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.30
Consensus pattern (38 bp):
TCAAGAACTAAAGTGTGAATTAAGCCTTATATTAAACA
Found at i:63214733 original size:52 final size:57
Alignment explanation
Indices: 63214616--63214734 Score: 140
Period size: 52 Copynumber: 2.1 Consensus size: 57
63214606 ATATATAATG
* * *
63214616 TTAAATTTAATTATTATTTGTTAATTACATGCTATTTTAATAAATTTTAAATTTATTACT
1 TTAAA-TTAATTATTATTTGTCAATTAAATGCTATTTT-ATAAA-TTTAAATTTATTACA
*
63214676 TTAAATTAATTATT-TTT-TCAATTAAATGCTA-TTT-TAAA-TTAAATTTATTTCA
1 TTAAATTAATTATTATTTGTCAATTAAATGCTATTTTATAAATTTAAATTTATTACA
63214728 TTAAATT
1 TTAAATT
63214735 GATTTATCAT
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
52 19 0.35
54 4 0.07
56 3 0.05
57 12 0.22
58 3 0.05
59 9 0.16
60 5 0.09
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.55
Consensus pattern (57 bp):
TTAAATTAATTATTATTTGTCAATTAAATGCTATTTTATAAATTTAAATTTATTACA
Found at i:63214766 original size:70 final size:70
Alignment explanation
Indices: 63214666--63214825 Score: 193
Period size: 70 Copynumber: 2.3 Consensus size: 70
63214656 TAAATTTTAA
* * * * *
63214666 ATTTATTACTTTAAATTAATTA-TTTTTTCAATTAAATGCTATTTTAAATT-AAATTTATTTCAT
1 ATTTATCA-TTTAAAATATTTATTTTTTTCAATTAAATGATATTTT-AATTAAAATTTATTGCAT
63214729 TAAATTG
64 TAAATTG
* *
63214736 ATTTATCATTTAAAATATTTATTTTTTTCAATTAAATTATATTTTAATTAAAATTTATTGCTTTA
1 ATTTATCATTTAAAATATTTATTTTTTTCAATTAAATGATATTTTAATTAAAATTTATTGCATTA
63214801 AATTG
66 AATTG
* *
63214806 AATAATCATTT--AATATTTAT
1 ATTTATCATTTAAAATATTTAT
63214826 ATCTTTTAAA
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
68 9 0.11
69 15 0.19
70 55 0.70
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (70 bp):
ATTTATCATTTAAAATATTTATTTTTTTCAATTAAATGATATTTTAATTAAAATTTATTGCATTA
AATTG
Found at i:63214794 original size:16 final size:16
Alignment explanation
Indices: 63214690--63214794 Score: 63
Period size: 17 Copynumber: 6.1 Consensus size: 16
63214680 ATTAATTATT
*
63214690 TTTTCAATTAAATGCTA
1 TTTTCAATTAAAT-TTA
*
63214707 TTTTAAATTAAATTTA
1 TTTTCAATTAAATTTA
*
63214723 -TTTC-ATTAAATTGA
1 TTTTCAATTAAATTTA
*
63214737 TTTATCATTTAAAATATTTA
1 TTT-TCAATT--AA-ATTTA
63214757 TTTTTTTCAATTAAATTATA
1 ---TTTTCAATTAAATT-TA
63214777 TTTT-AATTAAAATTTA
1 TTTTCAATT-AAATTTA
63214793 TT
1 TT
63214795 GCTTTAAATT
Statistics
Matches: 70, Mismatches: 7, Indels: 23
0.70 0.07 0.23
Matches are distributed among these distances:
14 9 0.13
15 5 0.07
16 12 0.17
17 23 0.33
19 5 0.07
20 8 0.11
22 5 0.07
23 3 0.04
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55
Consensus pattern (16 bp):
TTTTCAATTAAATTTA
Found at i:63214818 original size:36 final size:36
Alignment explanation
Indices: 63214712--63214819 Score: 107
Period size: 36 Copynumber: 3.1 Consensus size: 36
63214702 TGCTATTTTA
* *
63214712 AATT-AAATTTATTTCATTAAATTGATTTATCATTT
1 AATTAAAATTTATTTCTTTAAATTGAATTATCATTT
* * * *
63214747 AA--AATATTTATTTTTTTCAATTAAATTAT-ATTTT
1 AATTAAAATTTATTTCTTTAAATTGAATTATCA-TTT
* *
63214781 AATTAAAATTTATTGCTTTAAATTGAATAATCATTT
1 AATTAAAATTTATTTCTTTAAATTGAATTATCATTT
63214817 AAT
1 AAT
63214820 ATTTATATCT
Statistics
Matches: 56, Mismatches: 12, Indels: 9
0.73 0.16 0.12
Matches are distributed among these distances:
33 1 0.02
34 25 0.45
35 2 0.04
36 27 0.48
37 1 0.02
ACGTcount: A:0.40, C:0.05, G:0.03, T:0.53
Consensus pattern (36 bp):
AATTAAAATTTATTTCTTTAAATTGAATTATCATTT
Found at i:63217472 original size:39 final size:40
Alignment explanation
Indices: 63217414--63217657 Score: 248
Period size: 40 Copynumber: 6.2 Consensus size: 40
63217404 ACCCAATTAT
** *
63217414 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTCGCACAAATGC
* * *
63217452 CTTCGGGTCTTAGTCCGGATATGGTCACTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTCGCACAAATGC
* *
63217492 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTCGCACAAATGC
* *
63217532 CTTCGGGGCTTAGCCCGGA-ATTAGTAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATA-TAGTCACTCGCACAAATGC
* * * *
63217572 CTTCGGGACTTAGCCC-GAAATTAGTAACTCACACAAATGC
1 CTTCGGGTCTTAGCCCGGATA-TAGTCACTCGCACAAATGC
* * * *
63217612 CTTCGGGACTTAGCCCGGA-ATTAATCACTAGCACAAATGT
1 CTTCGGGTCTTAGCCCGGATA-TAGTCACTCGCACAAATGC
63217652 CTTCGG
1 CTTCGG
63217658 AACTTAACCC
Statistics
Matches: 182, Mismatches: 18, Indels: 10
0.87 0.09 0.05
Matches are distributed among these distances:
37 1 0.01
38 11 0.06
39 19 0.10
40 149 0.82
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTCGCACAAATGC
Found at i:63217504 original size:40 final size:41
Alignment explanation
Indices: 63217450--63217663 Score: 269
Period size: 40 Copynumber: 5.3 Consensus size: 41
63217440 CTCGCACAAG
* * * *
63217450 GCCTTCGGGTCTTAGTCCGGATA-TGGTCACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATTAGTAACTAGCACAAAT
*
63217490 GCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATTAGTAACTAGCACAAAT
* *
63217530 GCCTTCGGGGCTTAGCCCGGA-ATTAGTAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATTAGTAACTAGCACAAAT
*
63217570 GCCTTCGGGACTTAGCCC-GAAATTAGTAACTCA-CACAAAT
1 GCCTTCGGGACTTAGCCCGGATATTAGTAACT-AGCACAAAT
* *
63217610 GCCTTCGGGACTTAGCCCGGA-ATTAATCACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATTAGTAACTAGCACAAAT
* *
63217650 GTCTTCGGAACTTA
1 GCCTTCGGGACTTA
63217664 ACCCCGTTAG
Statistics
Matches: 157, Mismatches: 12, Indels: 10
0.88 0.07 0.06
Matches are distributed among these distances:
39 4 0.03
40 151 0.96
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATATTAGTAACTAGCACAAAT
Found at i:63217550 original size:80 final size:80
Alignment explanation
Indices: 63217414--63217663 Score: 310
Period size: 80 Copynumber: 3.1 Consensus size: 80
63217404 ACCCAATTAT
* *** * * * *
63217414 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGTCCGG-ATATGG
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAG
63217476 TCACTAGCACAAATGC
65 TCACTAGCACAAATGC
*
63217492 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGGCTTAGCCCGGAATTAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* *
63217557 AACTCGCACAAATGC
66 CACTAGCACAAATGC
* * *
63217572 CTTCGGGACTTAGCCC-GAAATTAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAA
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
*
63217636 TCACTAGCACAAATGT
65 TCACTAGCACAAATGC
*
63217652 CTTCGGAACTTA
1 CTTCGGGACTTA
63217664 ACCCCGTTAG
Statistics
Matches: 150, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
78 12 0.08
79 20 0.13
80 116 0.77
81 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
CACTAGCACAAATGC
Found at i:63230809 original size:30 final size:30
Alignment explanation
Indices: 63230775--63230850 Score: 143
Period size: 30 Copynumber: 2.5 Consensus size: 30
63230765 ACCTATGGGT
*
63230775 AAAATGGTCATTTTGCAAAAGTCTGGGGGC
1 AAAATGGTCATTTTGCAAAAGTCTAGGGGC
63230805 AAAATGGTCATTTTGCAAAAGTCTAGGGGC
1 AAAATGGTCATTTTGCAAAAGTCTAGGGGC
63230835 AAAATGGTCATTTTGC
1 AAAATGGTCATTTTGC
63230851 CCAATTTTAA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (30 bp):
AAAATGGTCATTTTGCAAAAGTCTAGGGGC
Found at i:63231292 original size:47 final size:45
Alignment explanation
Indices: 63231182--63231306 Score: 121
Period size: 47 Copynumber: 2.7 Consensus size: 45
63231172 TGTTTTATGC
*
63231182 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CACATTACGAGA
* **
63231228 G-TCAGTGTAAAACCATGTCTGGGACATGGCATC-G-GTATTGAGACGAGA
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCACATT---ACGAGA
*
63231276 GCTAGTGTAAGACATGTCTAGGACATGCATC
1 GCTAGTGTAAGACATGTCTGGGACATGCATC
63231307 CGCCCTCTTG
Statistics
Matches: 66, Mismatches: 6, Indels: 14
0.77 0.07 0.16
Matches are distributed among these distances:
45 4 0.06
46 14 0.21
47 28 0.42
48 19 0.29
49 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACATTACGAGA
Found at i:63232385 original size:37 final size:38
Alignment explanation
Indices: 63232267--63232390 Score: 151
Period size: 38 Copynumber: 3.2 Consensus size: 38
63232257 GAATCCAGTC
* * * * *
63232267 ACCAGCACAAAACCTACGGGACTTTAAGCTCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
* *
63232307 ACCAGCACTAGGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
*
63232345 ACCAGCACGAAGCCTGCGGGATTT-ACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
63232382 ACCAGCACG
1 ACCAGCACG
63232391 GGATTAACCC
Statistics
Matches: 75, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
37 21 0.28
38 32 0.43
39 5 0.07
40 17 0.23
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.19
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:63232405 original size:28 final size:28
Alignment explanation
Indices: 63232361--63232416 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
63232351 ACGAAGCCTG
* *
63232361 CGGGATTTACCCGGATAT-ATTACCAGCA
1 CGGGATTAACCCAGATATAATT-CCAGCA
63232389 CGGGATTAACCCAGATATAATTCCAGCA
1 CGGGATTAACCCAGATATAATTCCAGCA
63232417 TATAGCCTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 22 0.88
29 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (28 bp):
CGGGATTAACCCAGATATAATTCCAGCA
Found at i:63241766 original size:46 final size:44
Alignment explanation
Indices: 63241681--63241842 Score: 130
Period size: 46 Copynumber: 3.5 Consensus size: 44
63241671 GACGAGAACT
* *
63241681 AGTGTAAGACATGTCTGGGACATGCACCGGCCTCTTGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGAACCGGCCTCATGATGT--GCC
* ** *
63241727 AGTGTAAGACATGCCTGGGACATGAATTGG-CTACATGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGAACCGGCCT-CATGATGTGCC
* * ** * *
63241771 AGTCTAAGACCATGTCTGGGACATGACATCAACTTAACGTGA-GTGCC
1 AGTGTAAGA-CATGTCTGGGACATGA-ACCGGCCT--CATGATGTGCC
63241818 AGTGTAAGATCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
63241843 GAATCAGCAT
Statistics
Matches: 95, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
44 10 0.11
45 17 0.18
46 35 0.37
47 28 0.29
48 5 0.05
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGAACCGGCCTCATGATGTGCC
Found at i:63241833 original size:47 final size:44
Alignment explanation
Indices: 63241587--63241848 Score: 136
Period size: 47 Copynumber: 5.7 Consensus size: 44
63241577 TTTGTGCGCT
* * * * *
63241587 AGTGTAAGACATGTCTGGGACATGTATCAGCCACATTATAAGAGCC
1 AGTGTAAGACATGTCTGGGACATGAATCAACTACATGAT--GTGCC
* * * * * *
63241633 AGTGTAAGACCATGTCTGGGACATGGCATCGTCATTA-A-GACGAGAACT
1 AGTGTAAGA-CATGTCTGGGACAT-GAATC--AACTACATGATGTG--CC
* * ** *
63241681 AGTGTAAGACATGTCTGGGACATGCACCGGCCT-CTTGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGAATC-AACTACATGATGT--GCC
* *** *
63241727 AGTGTAAGACATGCCTGGGACATGAATTGGCTACATGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGAATCAACTACATGATGTGCC
* *
63241771 AGTCTAAGACCATGTCTGGGACATGACATCAACTTAACGTGA-GTGCC
1 AGTGTAAGA-CATGTCTGGGACATGA-ATCAAC-T-ACATGATGTGCC
63241818 AGTGTAAGATCATGTCTGGGACATGGAATCA
1 AGTGTAAGA-CATGTCTGGGACAT-GAATCA
63241849 GCATTATACC
Statistics
Matches: 167, Mismatches: 33, Indels: 31
0.72 0.14 0.13
Matches are distributed among these distances:
44 10 0.06
45 19 0.11
46 54 0.32
47 59 0.35
48 23 0.14
49 1 0.01
50 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGAATCAACTACATGATGTGCC
Found at i:63243228 original size:32 final size:32
Alignment explanation
Indices: 63243164--63243281 Score: 98
Period size: 33 Copynumber: 3.6 Consensus size: 32
63243154 TACATCGCAT
*
63243164 TACTGCTTACTGA-TACTGTGATGGGCTAAGGCCC
1 TACTG-TTACT-ATTACTGAGAT-GGCTAAGGCCC
63243198 TACTGTTACTATTACTGA-ATTGGCTAAGGCCC
1 TACTGTTACTATTACTGAGA-TGGCTAAGGCCC
* * *
63243230 TATTATTTACT-GTACTGAGATGAGCTAAGGCCC
1 TACT-GTTACTATTACTGAGATG-GCTAAGGCCC
* *
63243263 AAACTGGTACTATTACTGA
1 -TACTGTTACTATTACTGA
63243282 TATAGAAAAG
Statistics
Matches: 68, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
32 24 0.35
33 31 0.46
34 13 0.19
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.32
Consensus pattern (32 bp):
TACTGTTACTATTACTGAGATGGCTAAGGCCC
Found at i:63247366 original size:24 final size:24
Alignment explanation
Indices: 63247339--63247397 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 24
63247329 TTGGAGGCCT
63247339 AACCTCTTTTAAT-AACTAGGGCAA
1 AACC-CTTTTAATAAACTAGGGCAA
* *
63247363 AACCCTTTTTGATAAACTGGGGCAA
1 AACCC-TTTTAATAAACTAGGGCAA
*
63247388 AGCCCTTTTA
1 AACCCTTTTA
63247398 GCACTTCCTC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 1 0.03
24 14 0.48
25 14 0.48
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (24 bp):
AACCCTTTTAATAAACTAGGGCAA
Found at i:63247456 original size:10 final size:10
Alignment explanation
Indices: 63247443--63247482 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
63247433 ATATGTGAAT
63247443 ATATCATGTC
1 ATATCATGTC
63247453 ATATCATGTGC
1 ATATCATGT-C
*
63247464 ATATCATGGC
1 ATATCATGTC
63247474 ATATCATGT
1 ATATCATGT
63247483 ACAAAAGCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (10 bp):
ATATCATGTC
Found at i:63247469 original size:21 final size:21
Alignment explanation
Indices: 63247443--63247482 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
63247433 ATATGTGAAT
*
63247443 ATATCATGTCATATCATGTGC
1 ATATCATGGCATATCATGTGC
63247464 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
63247483 ACAAAAGCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:63247550 original size:25 final size:25
Alignment explanation
Indices: 63247522--63247572 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
63247512 ATAACATAAC
* * *
63247522 CCTAGGGGTATAATGGTCATTTTCA
1 CCTAGGGGCAAAAAGGTCATTTTCA
*
63247547 CCTAGGGGCAAAAAGGTTATTTTCA
1 CCTAGGGGCAAAAAGGTCATTTTCA
63247572 C
1 C
63247573 ATTATAAGGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAAAGGTCATTTTCA
Found at i:63255260 original size:24 final size:25
Alignment explanation
Indices: 63255233--63255284 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
63255223 GCTTAGCCTC
63255233 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
63255257 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
63255282 TTT
1 TTT
63255285 AGCACTTCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:63255360 original size:21 final size:21
Alignment explanation
Indices: 63255331--63255370 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
63255321 ATATGTGAAT
*
63255331 ATATCATGGTAGATCATGTGC
1 ATATCATGGCAGATCATGTGC
* *
63255352 ATATTATGGCATATCATGT
1 ATATCATGGCAGATCATGT
63255371 ACAAAAGCAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (21 bp):
ATATCATGGCAGATCATGTGC
Found at i:63277238 original size:58 final size:57
Alignment explanation
Indices: 63277099--63277239 Score: 167
Period size: 57 Copynumber: 2.5 Consensus size: 57
63277089 AACATATAAT
** * * *
63277099 AGGATTACCAGTCCAGGCTAAATCCTTTTTGTAATATATGCTCAGAAGAGCTCAATT
1 AGGATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCAGAAGAGATCAATC
* * * *
63277156 AGGATTACCACTCCAAGCTAAATCCTAATTGTAACATATGCTC-GAGAGGGATTATATC
1 AGGATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCAGA-AGAGATCA-ATC
*
63277214 AGGATCACCAGTCCAGGCTAAATCCT
1 AGGATTACCAGTCCAGGCTAAATCCT
63277240 GTCAGCAACA
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
56 2 0.03
57 43 0.61
58 25 0.36
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.28
Consensus pattern (57 bp):
AGGATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCAGAAGAGATCAATC
Found at i:63285217 original size:27 final size:27
Alignment explanation
Indices: 63285118--63285226 Score: 127
Period size: 26 Copynumber: 4.1 Consensus size: 27
63285108 ACCTAAACCC
* *
63285118 TATAAGATAAAATGACTGTTTTACCC-
1 TATATGATAAAATGACTGTTTTGCCCT
* * *
63285144 T-TGTGACAAAATGATTGTTTTGCCCT
1 TATATGATAAAATGACTGTTTTGCCCT
*
63285170 TATATGGT-AAATGACTGTTTTGCCCT
1 TATATGATAAAATGACTGTTTTGCCCT
63285196 TATATGATAAAATGA-TGATTTTGCCCT
1 TATATGATAAAATGACTG-TTTTGCCCT
63285223 TATA
1 TATA
63285227 AGGTAGAATG
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
25 19 0.28
26 28 0.41
27 22 0.32
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.40
Consensus pattern (27 bp):
TATATGATAAAATGACTGTTTTGCCCT
Found at i:63285223 original size:53 final size:51
Alignment explanation
Indices: 63285118--63285237 Score: 143
Period size: 53 Copynumber: 2.3 Consensus size: 51
63285108 ACCTAAACCC
* *
63285118 TATAAGATAAAATGACTGTTTTACCCTTGTGACAAAATGATTGTTTTGCCCT
1 TATAAGGT-AAATGACTGTTTTACCCTTATGACAAAATGATTGTTTTGCCCT
* * *
63285170 TATATGGTAAATGACTGTTTTGCCCTTATATGATAAAATGA-TGATTTTGCCCT
1 TATAAGGTAAATGACTGTTTTACCC-T-TATGACAAAATGATTG-TTTTGCCCT
63285223 TATAAGGTAGAATGA
1 TATAAGGTA-AATGA
63285238 TCGAAATACC
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
51 16 0.28
52 9 0.16
53 28 0.48
54 5 0.09
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.38
Consensus pattern (51 bp):
TATAAGGTAAATGACTGTTTTACCCTTATGACAAAATGATTGTTTTGCCCT
Found at i:63285238 original size:27 final size:26
Alignment explanation
Indices: 63285152--63285237 Score: 111
Period size: 26 Copynumber: 3.2 Consensus size: 26
63285142 CCTTGTGACA
*
63285152 AAATGATTGTTTTGCCCTTATATGGT
1 AAATGACTGTTTTGCCCTTATATGGT
*
63285178 AAATGACTGTTTTGCCCTTATATGAT
1 AAATGACTGTTTTGCCCTTATATGGT
*
63285204 AAAATGA-TGATTTTGCCCTTATAAGGT
1 -AAATGACTG-TTTTGCCCTTATATGGT
63285231 AGAATGA
1 A-AATGA
63285238 TCGAAATACC
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
26 27 0.51
27 26 0.49
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.40
Consensus pattern (26 bp):
AAATGACTGTTTTGCCCTTATATGGT
Found at i:63285258 original size:27 final size:27
Alignment explanation
Indices: 63285223--63285400 Score: 155
Period size: 27 Copynumber: 6.6 Consensus size: 27
63285213 ATTTTGCCCT
* * *
63285223 TATAAGGTAGAATGATCGAAATA-CCG
1 TATAGGGTAAAATGATCGAAATACCCC
* * *
63285249 TCATTGGGTAAAATGACCAAAATACCCC
1 T-ATAGGGTAAAATGATCGAAATACCCC
*
63285277 TATAGGGTAAAATGATCGAGATACCCC
1 TATAGGGTAAAATGATCGAAATACCCC
* *
63285304 TATAAGGTAAAATGATAGAAATACCCC
1 TATAGGGTAAAATGATCGAAATACCCC
* * *
63285331 TATACGGTAAAAT-AACTGTAATACCCC
1 TATAGGGTAAAATGATC-GAAATACCCC
* * * *
63285358 TGTAAGGTAAAATGAAT-GTAATATCCC
1 TATAGGGTAAAATG-ATCGAAATACCCC
*
63285385 TATAAGGTAAAATGAT
1 TATAGGGTAAAATGAT
63285401 TGATTTGCCC
Statistics
Matches: 125, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
26 4 0.03
27 117 0.94
28 3 0.02
29 1 0.01
ACGTcount: A:0.42, C:0.16, G:0.17, T:0.25
Consensus pattern (27 bp):
TATAGGGTAAAATGATCGAAATACCCC
Found at i:63285294 original size:54 final size:54
Alignment explanation
Indices: 63285223--63285400 Score: 175
Period size: 54 Copynumber: 3.3 Consensus size: 54
63285213 ATTTTGCCCT
* * **
63285223 TATAAGGTAGAATGATCGAAATA-CCGTCATTGGGTAAAATGACCA-AAATACCCC
1 TATAAGGTAAAATGATCGAAATACCCCT-ATAAGGTAAAATGA-CAGAAATACCCC
* * *
63285277 TATAGGGTAAAATGATCGAGATACCCCTATAAGGTAAAATGATAGAAATACCCC
1 TATAAGGTAAAATGATCGAAATACCCCTATAAGGTAAAATGACAGAAATACCCC
* * * * * *
63285331 TATACGGTAAAAT-AACTGTAATACCCCTGTAAGGTAAAATGA-ATGTAATATCCC
1 TATAAGGTAAAATGATC-GAAATACCCCTATAAGGTAAAATGACA-GAAATACCCC
63285385 TATAAGGTAAAATGAT
1 TATAAGGTAAAATGAT
63285401 TGATTTGCCC
Statistics
Matches: 103, Mismatches: 16, Indels: 9
0.80 0.12 0.07
Matches are distributed among these distances:
53 4 0.04
54 95 0.92
55 4 0.04
ACGTcount: A:0.42, C:0.16, G:0.17, T:0.25
Consensus pattern (54 bp):
TATAAGGTAAAATGATCGAAATACCCCTATAAGGTAAAATGACAGAAATACCCC
Found at i:63285340 original size:81 final size:81
Alignment explanation
Indices: 63285223--63285400 Score: 200
Period size: 81 Copynumber: 2.2 Consensus size: 81
63285213 ATTTTGCCCT
* * * ** * *
63285223 TATAAGGTAGAATGATCGAAATACCGTCATTGGGTAAAATGACCAAAATACCCCTATAGGGTAAA
1 TATAAGGTAAAATGATAGAAATACCCTCATACGGTAAAATAACCAAAATACCCCTATAAGGTAAA
63285288 ATG-ATCG-AGATACCCC
66 ATGAAT-GTA-ATACCCC
*** *
63285304 TATAAGGTAAAATGATAGAAATACCC-CTATACGGTAAAATAACTGTAATACCCCTGTAAGGTAA
1 TATAAGGTAAAATGATAGAAATACCCTC-ATACGGTAAAATAACCAAAATACCCCTATAAGGTAA
*
63285368 AATGAATGTAATATCCC
65 AATGAATGTAATACCCC
63285385 TATAAGGTAAAATGAT
1 TATAAGGTAAAATGAT
63285401 TGATTTGCCC
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
80 1 0.01
81 78 0.95
82 3 0.04
ACGTcount: A:0.42, C:0.16, G:0.17, T:0.25
Consensus pattern (81 bp):
TATAAGGTAAAATGATAGAAATACCCTCATACGGTAAAATAACCAAAATACCCCTATAAGGTAAA
ATGAATGTAATACCCC
Found at i:63285847 original size:34 final size:32
Alignment explanation
Indices: 63285769--63285867 Score: 85
Period size: 33 Copynumber: 3.0 Consensus size: 32
63285759 TACTACACTG
*
63285769 ATTCTGTAATGGGCTTAGGCCCCACTGAAACT
1 ATTCTGAAATGGGCTTAGGCCCCACTGAAACT
* **
63285801 ATTACT-AGAATGGGCTTAGGCCCATACTGATTCT
1 ATT-CTGA-AATGGGCTTAGGCCC-CACTGAAACT
* *
63285835 AATTCTGAAATGGG-TAAGGCCCTAACTGAAACT
1 -ATTCTGAAATGGGCTTAGGCCC-CACTGAAACT
63285868 GAAAGGGCTT
Statistics
Matches: 53, Mismatches: 9, Indels: 9
0.75 0.13 0.13
Matches are distributed among these distances:
32 3 0.06
33 31 0.58
34 15 0.28
35 4 0.08
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (32 bp):
ATTCTGAAATGGGCTTAGGCCCCACTGAAACT
Found at i:63289402 original size:53 final size:54
Alignment explanation
Indices: 63289214--63289420 Score: 215
Period size: 53 Copynumber: 3.8 Consensus size: 54
63289204 ATTAGGGTTT
* * * *
63289214 AAGGATACCAAGTAAGACCATGCCACAG-CATGGC-ATCAGTAAGTTTTATAAGGC
1 AAGGATACCATGTAAGACCATGTCA-AGACATGGCAAT-GGTAAGTTCTATAAGGC
* * * * * * *
63289268 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAACGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGT-AAGTTCTATAAGGC
* * * *
63289323 AAAGAT-CCTATGTAAGACCATGTCAAGGCATGACAATGGTGAGTTC-ATAAGGC
1 AAGGATACC-ATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGC
63289376 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
63289421 TAAAAAGGAA
Statistics
Matches: 122, Mismatches: 26, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
53 46 0.38
54 34 0.28
55 42 0.34
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGC
Found at i:63291650 original size:27 final size:26
Alignment explanation
Indices: 63291620--63291719 Score: 112
Period size: 27 Copynumber: 3.8 Consensus size: 26
63291610 TTTATGAGAT
*
63291620 AAAATGACTATTTTACCCTTATGTGG
1 AAAATGACTATTTTGCCCTTATGTGG
*
63291646 CAAAATGATTATTTTGCCCTTATGTGG
1 -AAAATGACTATTTTGCCCTTATGTGG
* * *
63291673 TAAATAACTATTTTGCCCTTATGTGAT
1 AAAATGACTATTTTGCCCTTATGTG-G
*
63291700 AAAAT-AATGATTTTGCCCTT
1 AAAATGACT-ATTTTGCCCTT
63291720 GTGAGATAGA
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 24 0.38
27 39 0.62
ACGTcount: A:0.30, C:0.15, G:0.14, T:0.41
Consensus pattern (26 bp):
AAAATGACTATTTTGCCCTTATGTGG
Found at i:63291769 original size:27 final size:27
Alignment explanation
Indices: 63291729--63291896 Score: 126
Period size: 27 Copynumber: 6.2 Consensus size: 27
63291719 TGTGAGATAG
* * *
63291729 AATGATCGAAATACCCCCATAGGGTAA
1 AATGACCGAAATACCCCTATAAGGTAA
*
63291756 AATGACCGAGATACCCCTATAAGGTAA
1 AATGACCGAAATACCCCTATAAGGTAA
*
63291783 AATGACAGAAATACCCCTATACA-GTAA
1 AATGACCGAAATACCCCTATA-AGGTAA
* * * * *
63291810 AATGA-CTATAATAGCCTTGTAGGGTAA
1 AATGACCGA-AATACCCCTATAAGGTAA
* * * * * *
63291837 AATAACTGTAATACCCATGTAGGGTAA
1 AATGACCGAAATACCCCTATAAGGTAA
* *
63291864 AATGA-CTATAATATCCCTATAAGGTAA
1 AATGACCGA-AATACCCCTATAAGGTAA
63291891 AATGAC
1 AATGAC
63291897 TGATTTGTCC
Statistics
Matches: 109, Mismatches: 26, Indels: 11
0.75 0.18 0.08
Matches are distributed among these distances:
26 1 0.01
27 107 0.98
28 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.23
Consensus pattern (27 bp):
AATGACCGAAATACCCCTATAAGGTAA
Found at i:63291835 original size:81 final size:81
Alignment explanation
Indices: 63291748--63291897 Score: 189
Period size: 81 Copynumber: 1.9 Consensus size: 81
63291738 AATACCCCCA
* *
63291748 TAGGGTAAAATGACCG-AGATACCCCTATAAGGTAAAATGAC-AGAAATACCCCTATACA-GTAA
1 TAGGGTAAAATAACCGTA-ATACCCATATAAGGTAAAATGACTA-AAATACCCCTATA-AGGTAA
63291810 AATGACTATAATAGCCTTG
63 AATGACTATAATAGCCTTG
* * * * *
63291829 TAGGGTAAAATAACTGTAATACCCATGTAGGGTAAAATGACTATAATATCCCTATAAGGTAAAAT
1 TAGGGTAAAATAACCGTAATACCCATATAAGGTAAAATGACTAAAATACCCCTATAAGGTAAAAT
63291894 GACT
66 GACT
63291898 GATTTGTCCT
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
80 1 0.02
81 56 0.95
82 2 0.03
ACGTcount: A:0.42, C:0.16, G:0.17, T:0.25
Consensus pattern (81 bp):
TAGGGTAAAATAACCGTAATACCCATATAAGGTAAAATGACTAAAATACCCCTATAAGGTAAAAT
GACTATAATAGCCTTG
Found at i:63291836 original size:54 final size:54
Alignment explanation
Indices: 63291770--63291896 Score: 155
Period size: 54 Copynumber: 2.4 Consensus size: 54
63291760 ACCGAGATAC
*
63291770 CCCTATAAGGTAAAATGACAGAAATACCCCTATACAGTAAAATGACTATAATAG
1 CCCTATAAGGTAAAATGACAGAAATACCCATATACAGTAAAATGACTATAATAG
* * * * * * * ** *
63291824 CCTTGTAGGGTAAAATAACTGTAATACCCATGTAGGGTAAAATGACTATAATAT
1 CCCTATAAGGTAAAATGACAGAAATACCCATATACAGTAAAATGACTATAATAG
63291878 CCCTATAAGGTAAAATGAC
1 CCCTATAAGGTAAAATGAC
63291897 TGATTTGTCC
Statistics
Matches: 58, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.43, C:0.17, G:0.16, T:0.25
Consensus pattern (54 bp):
CCCTATAAGGTAAAATGACAGAAATACCCATATACAGTAAAATGACTATAATAG
Found at i:63304321 original size:43 final size:43
Alignment explanation
Indices: 63304273--63304421 Score: 126
Period size: 43 Copynumber: 3.5 Consensus size: 43
63304263 GTTACCGAGA
* * *
63304273 TGTGATTACATGTAAGACTATGTTTGGGACATTGGCATT-GTAT
1 TGTGATTACATGTAAGACCATGTCTAGGACATTGGC-TTCGTAT
*
63304316 TGTGATTACGTGTAAGACCATGTCTAGGACATTGGCTTCGTAT
1 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCTTCGTAT
*** * * * *
63304359 T-TGATTTTGTGTAAGATCC-TGTCTGGGGCAATGGCATCG-AT
1 TGTGATTACATGTAAGA-CCATGTCTAGGACATTGGCTTCGTAT
* *
63304400 ATGAGATAACATGTAAGACCAT
1 -TGTGATTACATGTAAGACCAT
63304422 ATCTGGGATA
Statistics
Matches: 86, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
41 2 0.02
42 34 0.40
43 50 0.58
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.35
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTAGGACATTGGCTTCGTAT
Found at i:63304382 original size:42 final size:43
Alignment explanation
Indices: 63304273--63304382 Score: 127
Period size: 43 Copynumber: 2.6 Consensus size: 43
63304263 GTTACCGAGA
* * * *
63304273 TGTGATTACATGTAAGACTATGTTTGGGACATTGGCATTGTAT
1 TGTGATTACGTGTAAGACCATGTCTAGGACATTGGCATTGTAT
63304316 TGTGATTACGTGTAAGACCATGTCTAGGACATTGGC-TTCGTAT
1 TGTGATTACGTGTAAGACCATGTCTAGGACATTGGCATT-GTAT
**
63304359 T-TGATTTTGTGTAAGATCC-TGTCT
1 TGTGATTACGTGTAAGA-CCATGTCT
63304383 GGGGCAATGG
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
42 20 0.34
43 39 0.66
ACGTcount: A:0.23, C:0.13, G:0.25, T:0.40
Consensus pattern (43 bp):
TGTGATTACGTGTAAGACCATGTCTAGGACATTGGCATTGTAT
Found at i:63312072 original size:42 final size:43
Alignment explanation
Indices: 63311961--63312125 Score: 185
Period size: 43 Copynumber: 3.9 Consensus size: 43
63311951 GTTACCGAGA
* * *
63311961 TGTGATTACATATAAGACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
63312004 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * * * *
63312047 T-TGATTTCGTGTAAGACCCTATCTGGGACAGTGGCATC-AAT
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
63312088 ATGTG-TTAACATGTAAGACCATATCTGGGATA-TGGCAT
1 -TGTGATT-ACGTGTAAGACCATGTCTGGGACATTGGCAT
63312126 TGTACGAGCT
Statistics
Matches: 107, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
41 2 0.02
42 42 0.39
43 63 0.59
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.33
Consensus pattern (43 bp):
TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:63312897 original size:22 final size:20
Alignment explanation
Indices: 63312872--63312920 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 20
63312862 GTTATATAAG
*
63312872 TTTGATGATTTTGGTATATTGA
1 TTTGATG-TTTTGGT-TATGGA
63312894 TTTGGTATGTTTTGGTTATGGA
1 TTT-G-ATGTTTTGGTTATGGA
63312916 TTTGA
1 TTTGA
63312921 GTAGTGAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
21 1 0.04
22 11 0.46
23 8 0.33
24 3 0.12
ACGTcount: A:0.18, C:0.00, G:0.27, T:0.55
Consensus pattern (20 bp):
TTTGATGTTTTGGTTATGGA
Found at i:63313645 original size:6 final size:6
Alignment explanation
Indices: 63313625--63313755 Score: 99
Period size: 6 Copynumber: 21.3 Consensus size: 6
63313615 AAGAAACATT
* *
63313625 ATCAGA A-CTAGA ATCAAA ATCAGA ATCAGA ATCAGA ATCAGGTG AT-AGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* * *
63313674 ATCAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATTAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * *
63313723 ATCAGT ATCAGGTA A-CAAA ATCAAA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
63313756 GTGAATGCAA
Statistics
Matches: 100, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
5 6 0.06
6 82 0.82
7 8 0.08
8 4 0.04
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:63313679 original size:31 final size:31
Alignment explanation
Indices: 63313642--63313755 Score: 120
Period size: 31 Copynumber: 3.5 Consensus size: 31
63313632 CTAGAATCAA
63313642 AATCAGAATCAGAATCAGAATCAGGTGATAGAATCAG
1 AATCAGAATCAGAATCAGAATCA-G-G-T-G-A-CAG
*
63313679 AATCAGAATCAGAATCAGAATTAGGTGACAG
1 AATCAGAATCAGAATCAGAATCAGGTGACAG
* * * *
63313710 AATTAGAATCAGAATCAGTATCAGGTAACAA
1 AATCAGAATCAGAATCAGAATCAGGTGACAG
*
63313741 AATCAAAATCAGAAT
1 AATCAGAATCAGAAT
63313756 GTGAATGCAA
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
31 42 0.61
32 1 0.01
33 1 0.01
34 1 0.01
35 1 0.01
36 1 0.01
37 22 0.32
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGAATCAGGTGACAG
Found at i:63313683 original size:37 final size:37
Alignment explanation
Indices: 63313633--63313733 Score: 157
Period size: 37 Copynumber: 2.7 Consensus size: 37
63313623 TTATCAGAAC
*
63313633 TAGAATCAAAATCAGAATCAGAATCAGAATCAGGTGA
1 TAGAATCAGAATCAGAATCAGAATCAGAATCAGGTGA
*
63313670 TAGAATCAGAATCAGAATCAGAATCAGAATTAGGTGA
1 TAGAATCAGAATCAGAATCAGAATCAGAATCAGGTGA
* * *
63313707 CAGAATTAGAATCAGAATCAGTATCAG
1 TAGAATCAGAATCAGAATCAGAATCAG
63313734 GTAACAAAAT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.21
Consensus pattern (37 bp):
TAGAATCAGAATCAGAATCAGAATCAGAATCAGGTGA
Found at i:63313755 original size:37 final size:37
Alignment explanation
Indices: 63313634--63313755 Score: 148
Period size: 37 Copynumber: 3.5 Consensus size: 37
63313624 TATCAGAACT
*
63313634 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAT
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
* *
63313671 AGAATCAGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
* *
63313708 AGAAT-----T-AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
*
63313739 AAAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
63313756 GTGAATGCAA
Statistics
Matches: 72, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
31 26 0.36
32 1 0.01
36 1 0.01
37 44 0.61
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (37 bp):
AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
Found at i:63314279 original size:27 final size:27
Alignment explanation
Indices: 63314249--63314685 Score: 478
Period size: 27 Copynumber: 16.2 Consensus size: 27
63314239 AACACCCTAG
*
63314249 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
*
63314276 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
** * **
63314303 GGGTAAAACAGTAATTCTGTAAATTAA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* *
63314330 GGGTAAAATGGTGATTTTGTAAATCAA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* *
63314357 GGATAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* * *
63314384 GCGTAAAACGATAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
*
63314411 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* * * *
63314438 GGGTAAAATGATAATTCTATAAATTGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* * *
63314465 GGGTAAAATAGTAATTTTTTAAATTGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* * **
63314492 GGGTAAAACGATAATTTTGTAAAGAGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* * *
63314519 GGGTAAAGTAGTAATTCTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* * * *
63314546 GGGTAACATGATAATTCTGTAAATCGG
1 GGGTAAAATGGTAATTTTGTAAATCGA
*
63314573 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
*
63314600 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* * *
63314627 GGGTAAAATAGTAATTCTATAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
*** ** *
63314654 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
63314681 GGGTA
1 GGGTA
63314686 TTTCAGTAAG
Statistics
Matches: 343, Mismatches: 67, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 343 1.00
ACGTcount: A:0.39, C:0.06, G:0.23, T:0.32
Consensus pattern (27 bp):
GGGTAAAATGGTAATTTTGTAAATCGA
Found at i:63314694 original size:27 final size:26
Alignment explanation
Indices: 63314583--63314806 Score: 148
Period size: 27 Copynumber: 8.3 Consensus size: 26
63314573 GGGTAAAACG
** **
63314583 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTTTACAAATCGAGGGT-ATTTA
** **
63314610 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTTTACAAATCGAGGGT-ATTTA
* * *
63314637 GTAATTCTATAAATCGAGGGTACTTTG
1 GTAATTTTACAAATCGAGGGTA-TTTA
*
63314664 GTAATTTTACAAGTCGAGGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTT-A
* **
63314691 GTAAGTTTACAGGTCGAGGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTT-A
* *
63314718 GTAATTTCACAAATC-AGAGGTATTTTG
1 GTAATTTTACAAATCGAG-GGTA-TTTA
* *
63314745 GTAATTTTACAAA-CTAGGGGTATTTG
1 GTAATTTTACAAATCGA-GGGTATTTA
* *
63314771 GTAATTTTACAAA-CCAGGGGTATTTTG
1 GTAATTTTACAAATCGA-GGGTA-TTTA
63314798 GTAATTTTA
1 GTAATTTTA
63314807 TAAACCAATG
Statistics
Matches: 172, Mismatches: 18, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
26 32 0.19
27 136 0.79
28 4 0.02
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.37
Consensus pattern (26 bp):
GTAATTTTACAAATCGAGGGTATTTA
Found at i:63314796 original size:53 final size:53
Alignment explanation
Indices: 63314707--63314830 Score: 158
Period size: 53 Copynumber: 2.3 Consensus size: 53
63314697 TTACAGGTCG
* * *
63314707 AGGGTATTTCAGTAATTTCACAAATCAGAGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTT-GGTAATTTCACAAACCAGAGGTATTTTGGTAATTTTACAAACCA
* * * *
63314761 GGGGTATTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTGGTAATTTCACAAACCAGAGGTATTTTGGTAATTTTACAAACCA
*
63314814 ATGGTATTTTGGTAATT
1 AGGGTA-TTTGGTAATT
63314831 CTACCCTACA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
53 42 0.70
54 18 0.30
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (53 bp):
AGGGTATTTGGTAATTTCACAAACCAGAGGTATTTTGGTAATTTTACAAACCA
Found at i:63314811 original size:27 final size:27
Alignment explanation
Indices: 63314708--63314830 Score: 158
Period size: 27 Copynumber: 4.6 Consensus size: 27
63314698 TACAGGTCGA
** * *
63314708 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
63314735 AGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
63314762 GGGTA-TTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
63314788 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
63314815 TGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
63314831 CTACCCTACA
Statistics
Matches: 84, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 25 0.30
27 59 0.70
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:63314849 original size:27 final size:27
Alignment explanation
Indices: 63314819--63314895 Score: 100
Period size: 27 Copynumber: 2.9 Consensus size: 27
63314809 AACCAATGGT
*
63314819 ATTTTGGTAATTCTACCCTACAGGGGC
1 ATTTTAGTAATTCTACCCTACAGGGGC
* *
63314846 ATTTTAGTAATTCTACCCTACAAGGGT
1 ATTTTAGTAATTCTACCCTACAGGGGC
* * *
63314873 ATTTCAGTAATGCTAGCCTACAG
1 ATTTTAGTAATTCTACCCTACAG
63314896 ATATGAGATT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (27 bp):
ATTTTAGTAATTCTACCCTACAGGGGC
Found at i:63314850 original size:54 final size:53
Alignment explanation
Indices: 63314707--63314857 Score: 135
Period size: 53 Copynumber: 2.8 Consensus size: 53
63314697 TTACAGGTCG
* * * * *
63314707 AGGGTATTTCAGTAATT-TCACAAATCAGAGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTT-GGTAATTCT-ACAAACCAGGGGCATTTTGGTAATTTTACAAACCA
* * * *
63314761 GGGGTATTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTGGTAATTCTACAAACCAGGGGCATTTTGGTAATTTTACAAACCA
* ** *
63314814 ATGGTATTTTGGTAATTCTACCCTA-CAGGGGCATTTTAGTAATT
1 AGGGTA-TTTGGTAATTCTA-CAAACCAGGGGCATTTTGGTAATT
63314858 CTACCCTACA
Statistics
Matches: 81, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
53 41 0.51
54 38 0.47
55 2 0.02
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.38
Consensus pattern (53 bp):
AGGGTATTTGGTAATTCTACAAACCAGGGGCATTTTGGTAATTTTACAAACCA
Found at i:63316762 original size:18 final size:18
Alignment explanation
Indices: 63316722--63316763 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
63316712 GGGTTGAGAC
* *
63316722 ACGGGCGTGTGTGACCAC
1 ACGGTCGTGTGTGACCAA
63316740 ACGGTCGTGTGTGACCAA
1 ACGGTCGTGTGTGACCAA
63316758 ACGGTC
1 ACGGTC
63316764 TGCCCACATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.26, G:0.36, T:0.19
Consensus pattern (18 bp):
ACGGTCGTGTGTGACCAA
Found at i:63325326 original size:40 final size:40
Alignment explanation
Indices: 63325271--63325747 Score: 758
Period size: 40 Copynumber: 11.7 Consensus size: 40
63325261 ATTTGAATAC
*
63325271 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
*
63325311 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
63325351 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
*
63325391 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
63325431 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
63325471 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
* *
63325511 ATCCGGGCTAAGACCCGAAGGCATTTGGTGTAATTTGGTGAGGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTG-CA-------A-GTTGATAT
63325561 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
*
63325601 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGCTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
63325641 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
* *
63325681 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTGATAT
* *
63325721 ACCCGGGTTAAGACCCGAAGGCAATTG
1 ATCCGGGCTAAGACCCGAAGGCAATTG
63325748 AGCTTGTGGT
Statistics
Matches: 412, Mismatches: 13, Indels: 24
0.92 0.03 0.05
Matches are distributed among these distances:
39 3 0.01
40 363 0.88
41 7 0.02
42 1 0.00
48 1 0.00
49 4 0.01
50 33 0.08
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
Found at i:63325665 original size:170 final size:170
Alignment explanation
Indices: 63325383--63325705 Score: 628
Period size: 170 Copynumber: 1.9 Consensus size: 170
63325373 AATTGTGCAA
*
63325383 GTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCCG
1 GTTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCG
*
63325448 AAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATAT
66 AAGGCAATTGTGCAAGCTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATAT
63325513 CCGGGCTAAGACCCGAAGGCATTTGGTGTAATTTGGTGAG
131 CCGGGCTAAGACCCGAAGGCATTTGGTGTAATTTGGTGAG
63325553 GTTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCG
1 GTTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCG
63325618 AAGGCAATTGTGCAAGCTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATAT
66 AAGGCAATTGTGCAAGCTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATAT
63325683 CCGGGCTAAGACCCGAAGGCATT
131 CCGGGCTAAGACCCGAAGGCATT
63325706 CGTGCGAGTT
Statistics
Matches: 151, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
170 151 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (170 bp):
GTTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCG
AAGGCAATTGTGCAAGCTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATAT
CCGGGCTAAGACCCGAAGGCATTTGGTGTAATTTGGTGAG
Found at i:63325764 original size:250 final size:249
Alignment explanation
Indices: 63325303--63325770 Score: 803
Period size: 250 Copynumber: 1.9 Consensus size: 249
63325293 ATTTGTGCAA
*
63325303 GTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCCG
1 GTTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCG
* *
63325368 AAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATAT
66 AAGGCAATTGTGCAAGCTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATAT
*
63325433 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTG
131 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATACCCGGGCTAAGACCCGAAGGCAATTG
* *
63325498 TGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGGTGTAATTTGGTGAG
196 AGCAAGTGGATATATCC-GGCTAAGACCCGAAGGCATTTGGTGTAATTTGGTGAG
63325553 GTTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCG
1 GTTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCG
63325618 AAGGCAATTGTGCAAGCTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATAT
66 AAGGCAATTGTGCAAGCTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATAT
* * *
63325683 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATT
131 CCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTGATATACCCGGGCTAAGACCCGAAGGCAATT
** *
63325747 GAGCTTGTGGTTATATCCGGCTAA
195 GAGCAAGTGGATATATCCGGCTAA
63325771 ATTCCGAAGA
Statistics
Matches: 205, Mismatches: 12, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
249 9 0.04
250 196 0.96
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (249 bp):
GTTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCG
AAGGCAATTGTGCAAGCTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATAT
CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATACCCGGGCTAAGACCCGAAGGCAATTG
AGCAAGTGGATATATCCGGCTAAGACCCGAAGGCATTTGGTGTAATTTGGTGAG
Found at i:63333959 original size:40 final size:40
Alignment explanation
Indices: 63333904--63334329 Score: 757
Period size: 40 Copynumber: 10.7 Consensus size: 40
63333894 ATTTGAATAC
*
63333904 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
*
63333944 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
63333984 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
*
63334024 AT-CGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
63334063 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
63334103 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
*
63334143 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
63334183 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
63334223 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
* *
63334263 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTGATAT
* *
63334303 ACCCGGGTTAAGACCCGAAGGCAATTG
1 ATCCGGGCTAAGACCCGAAGGCAATTG
63334330 AGCTTGTGGT
Statistics
Matches: 374, Mismatches: 9, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
39 41 0.11
40 330 0.88
41 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
Found at i:63344415 original size:29 final size:28
Alignment explanation
Indices: 63344361--63344415 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 28
63344351 TATAGATCAA
*
63344361 GAAAGACAAGGTTCTGACCTAGATCGGG
1 GAAAGACAAGGTTCTGACCTAAATCGGG
*
63344389 GAAAGAACAAGGTTGTGGA-CTAAATCG
1 GAAAG-ACAAGGTTCT-GACCTAAATCG
63344416 AACTATTAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 5 0.22
29 16 0.70
30 2 0.09
ACGTcount: A:0.36, C:0.15, G:0.31, T:0.18
Consensus pattern (28 bp):
GAAAGACAAGGTTCTGACCTAAATCGGG
Found at i:63352679 original size:60 final size:60
Alignment explanation
Indices: 63352594--63352714 Score: 224
Period size: 60 Copynumber: 2.0 Consensus size: 60
63352584 GAAAATTTGC
*
63352594 AAATTCGAATCGAGCCAGGCAAAAAAAAGCTTACCTGAGGTCCGACCCATTTAGAAAACG
1 AAATTCGAATCGAGCCAGGCAAAAAAAAGCTTACCTGAGGTCCAACCCATTTAGAAAACG
*
63352654 AAATTTGAATCGAGCCAGGCAAAAAAAAGCTTACCTGAGGTCCAACCCATTTAGAAAACG
1 AAATTCGAATCGAGCCAGGCAAAAAAAAGCTTACCTGAGGTCCAACCCATTTAGAAAACG
63352714 A
1 A
63352715 GTCTTATTTC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.41, C:0.22, G:0.19, T:0.17
Consensus pattern (60 bp):
AAATTCGAATCGAGCCAGGCAAAAAAAAGCTTACCTGAGGTCCAACCCATTTAGAAAACG
Found at i:63357747 original size:20 final size:20
Alignment explanation
Indices: 63357722--63357773 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
63357712 CGGGTTGAGG
* *
63357722 ACACGGGCGTGTCCCATGCC
1 ACACGGACGTGTCCCAAGCC
63357742 ACACGGACGTGTCCCAAGCC
1 ACACGGACGTGTCCCAAGCC
63357762 ACACGGACGTGT
1 ACACGGACGTGT
63357774 AACCCTCCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.21, C:0.37, G:0.29, T:0.13
Consensus pattern (20 bp):
ACACGGACGTGTCCCAAGCC
Found at i:63358109 original size:39 final size:39
Alignment explanation
Indices: 63358050--63358170 Score: 152
Period size: 39 Copynumber: 3.1 Consensus size: 39
63358040 AGTAAAATAA
* * * *
63358050 TTTAGTCATTCAATAACTATCAAATATTTAGTGCAGTAG
1 TTTAGTTATTCAATAACTATCAATTATTCAGTACAGTAG
* * * *
63358089 TTTAGTTATTCAATACCTATCAATTATTCAATATAGTAA
1 TTTAGTTATTCAATAACTATCAATTATTCAGTACAGTAG
* *
63358128 CTTAGTTATTCAATAACTATCAATTATTCAGTTCAGTAG
1 TTTAGTTATTCAATAACTATCAATTATTCAGTACAGTAG
63358167 TTTA
1 TTTA
63358171 CCCCTATTAA
Statistics
Matches: 67, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.42
Consensus pattern (39 bp):
TTTAGTTATTCAATAACTATCAATTATTCAGTACAGTAG
Found at i:63358156 original size:18 final size:18
Alignment explanation
Indices: 63358094--63358157 Score: 65
Period size: 18 Copynumber: 3.4 Consensus size: 18
63358084 AGTAGTTTAG
*
63358094 TTATTCAATACCTATCAA
1 TTATTCAATAACTATCAA
* * *
63358112 TTATTCAATATAGTAACTTAG
1 TTATTCAATA-ACT-A-TCAA
63358133 TTATTCAATAACTATCAA
1 TTATTCAATAACTATCAA
63358151 TTATTCA
1 TTATTCA
63358158 GTTCAGTAGT
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
18 19 0.53
19 2 0.06
20 3 0.08
21 12 0.33
ACGTcount: A:0.39, C:0.16, G:0.03, T:0.42
Consensus pattern (18 bp):
TTATTCAATAACTATCAA
Found at i:63359579 original size:20 final size:20
Alignment explanation
Indices: 63359556--63359612 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
63359546 TTAATTTATT
63359556 TTTAATAAAAATAATTATAA
1 TTTAATAAAAATAATTATAA
*
63359576 TTTAAT-AATATAAATTATAA
1 TTTAATAAAAAT-AATTATAA
*
63359596 TTTGATAGAATAATAAT
1 TTTAATA-AA-AATAAT
63359613 AATGATGATA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
19 4 0.13
20 19 0.63
22 5 0.17
23 2 0.07
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (20 bp):
TTTAATAAAAATAATTATAA
Found at i:63365692 original size:39 final size:39
Alignment explanation
Indices: 63365651--63365786 Score: 155
Period size: 39 Copynumber: 3.5 Consensus size: 39
63365641 ATTTAATCAG
* * * *
63365651 TAACAATCAATTATTCAGTACAATAATTTAGTCATTTAG
1 TAACTATCAATTATTCAGTACAATAATTTAGTTATTCAA
* * * * *
63365690 TAACTATCAAATATTTAGTGCAGTAGTTTAGTTATTCAA
1 TAACTATCAATTATTCAGTACAATAATTTAGTTATTCAA
* * *
63365729 TACCTATCAATTATTCAATACAATAATATAGTTATTCAA
1 TAACTATCAATTATTCAGTACAATAATTTAGTTATTCAA
*
63365768 TAACTATCAATTGTTCAGT
1 TAACTATCAATTATTCAGT
63365787 TCAGTAGTTT
Statistics
Matches: 77, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.40
Consensus pattern (39 bp):
TAACTATCAATTATTCAGTACAATAATTTAGTTATTCAA
Found at i:63366008 original size:44 final size:44
Alignment explanation
Indices: 63365939--63366030 Score: 123
Period size: 44 Copynumber: 2.1 Consensus size: 44
63365929 CCGAAGTAAC
*
63365939 AGTAACAGTATGACACACAAGGTGCCTCATTGACTCAAAGTCAA
1 AGTAACAGTATGACACACAAGGTGCCTCATCGACTCAAAGTCAA
** * *
63365983 AGTAACAGTATGACAC-TTAGAGTGCCTCATCGACTCAAGGTCGA
1 AGTAACAGTATGACACACAAG-GTGCCTCATCGACTCAAAGTCAA
63366027 AGTA
1 AGTA
63366031 TCCTTGAACA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
43 2 0.05
44 40 0.95
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTAACAGTATGACACACAAGGTGCCTCATCGACTCAAAGTCAA
Found at i:63366955 original size:3 final size:3
Alignment explanation
Indices: 63366947--63366977 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
63366937 TTTATTAACT
63366947 TAA TAA TAA TAA TAA TAA TAA TAA TAA -AA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
63366978 TCTTATTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:63367245 original size:23 final size:23
Alignment explanation
Indices: 63367219--63367281 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 23
63367209 TTAATTTATT
*
63367219 TTTAATAATAATAATAATCATAA
1 TTTAAAAATAATAATAATCATAA
*
63367242 TTTAAAAAT-AT-A-AATTATAA
1 TTTAAAAATAATAATAATCATAA
*
63367262 TTTGATAGAATAATAATAAT
1 TTT-A-AAAATAATAATAAT
63367282 AATGATAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
20 10 0.31
21 2 0.06
22 6 0.19
23 10 0.31
24 1 0.03
25 3 0.09
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.40
Consensus pattern (23 bp):
TTTAAAAATAATAATAATCATAA
Found at i:63371044 original size:14 final size:14
Alignment explanation
Indices: 63371025--63371054 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
63371015 TAATGTATTT
63371025 AATTTATATAACAA
1 AATTTATATAACAA
*
63371039 AATTTATATTACAA
1 AATTTATATAACAA
63371053 AA
1 AA
63371055 CTACGTTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (14 bp):
AATTTATATAACAA
Found at i:63372730 original size:40 final size:40
Alignment explanation
Indices: 63372680--63372907 Score: 293
Period size: 40 Copynumber: 5.7 Consensus size: 40
63372670 GCTACTCACT
* *
63372680 CAAATGCCTTCGGGACATAGCCCGGTTAGAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
63372720 CAATTGCCTTCGGGACATAGCCCAGTTAGAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
63372760 CAATTGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
63372800 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * * *
63372840 CAAATGCCTTCGGGACTT-GCCCGG-AACTAGTCACTAGCG
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
63372879 CAGATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
63372908 CATCCAAATA
Statistics
Matches: 171, Mismatches: 12, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
39 32 0.19
40 136 0.80
41 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:63380947 original size:39 final size:40
Alignment explanation
Indices: 63380799--63381028 Score: 304
Period size: 40 Copynumber: 5.8 Consensus size: 40
63380789 GTATATAGCT
* * *
63380799 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
63380839 ACTCGCACAATTGCCTTCGGGACTTAGCCCAGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
63380879 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
63380919 ACTCGCACAAATG-CTTCGAGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* ** *
63380958 ACTCACACAAATGCCTTCGGGACTT-GCCCGGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
63380997 ACTAGCGCAGATGCCTTTGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
63381029 TTATCATCCA
Statistics
Matches: 169, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
39 68 0.40
40 99 0.59
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:63380972 original size:79 final size:81
Alignment explanation
Indices: 63380806--63380989 Score: 286
Period size: 79 Copynumber: 2.3 Consensus size: 81
63380796 GCTACTCGCT
* * *
63380806 CAAATGCCTTCGGGACATAGCCCGG-TTAGAGTAACTCGCACAATTGCCTTCGGGACTTAGCCCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCA
*
63380870 GATTTAGTAACTCGCA
66 GATTTAGTAACTCACA
* *
63380886 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATG-CTTCGAGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCA
63380949 GATTTAGTAACTCACA
66 GATTTAGTAACTCACA
63380965 CAAATGCCTTCGGGACTT-GCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63380990 ACTAGTCACT
Statistics
Matches: 97, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
78 7 0.07
79 48 0.49
80 40 0.41
81 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCA
GATTTAGTAACTCACA
Found at i:63381021 original size:79 final size:80
Alignment explanation
Indices: 63380806--63381028 Score: 281
Period size: 79 Copynumber: 2.8 Consensus size: 80
63380796 GCTACTCGCT
* * * * * *
63380806 CAAATGCCTTCGGGACATAGCCCGGTTA-GAGTAACTCGCACAATTGCCTTCGGGACTTAGCCCA
1 CAAATGCCTTCGGGACTTAGCCCGG-AACTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCG
*
63380870 GATTTAGTAACTCGCA
65 GATTTAGTAACTCACA
** * *
63380886 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATG-CTTCGAGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAACTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
63380950 ATTTAGTAACTCACA
66 ATTTAGTAACTCACA
* * * *
63380965 CAAATGCCTTCGGGACTT-GCCCGGAACTAGTCACTAGCGCAGATGCCTTTGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAACTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
63381029 TTATCATCCA
Statistics
Matches: 125, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
78 21 0.17
79 64 0.51
80 40 0.32
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGAACTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
ATTTAGTAACTCACA
Found at i:63388937 original size:40 final size:40
Alignment explanation
Indices: 63388892--63389046 Score: 181
Period size: 40 Copynumber: 3.9 Consensus size: 40
63388882 GGATATAGCT
* * *
63388892 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
*
63388932 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
* *
63388972 ACTCGCACAAATGCCTTCGGGACTT-GCCCGG-AACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
* ** *
63389011 ACTAGCGTAGATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
63389047 CATCCAAATA
Statistics
Matches: 98, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
39 31 0.32
40 64 0.65
41 3 0.03
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:63396122 original size:29 final size:28
Alignment explanation
Indices: 63396076--63396159 Score: 96
Period size: 29 Copynumber: 3.0 Consensus size: 28
63396066 ACTGTATCTA
* * *
63396076 GCCCACTAAGCCCAATCATATTCATATG
1 GCCCATTAGGCCCAATCACATTCATATG
* *
63396104 GCCCATTAGGCCCAAATCACATTTATATT
1 GCCCATTAGGCCC-AATCACATTCATATG
* *
63396133 GCCCTTTAGGCCCAGTCACATTCATAT
1 GCCCATTAGGCCCAATCACATTCATAT
63396160 TCATGCTCAC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
28 23 0.49
29 24 0.51
ACGTcount: A:0.29, C:0.31, G:0.12, T:0.29
Consensus pattern (28 bp):
GCCCATTAGGCCCAATCACATTCATATG
Found at i:63396160 original size:28 final size:28
Alignment explanation
Indices: 63396076--63396160 Score: 98
Period size: 28 Copynumber: 3.0 Consensus size: 28
63396066 ACTGTATCTA
* * * *
63396076 GCCCACTAAGCCCAATCATATTCATATG
1 GCCCATTAGGCCCAATCACATTCATATT
*
63396104 GCCCATTAGGCCCAAATCACATTTATATT
1 GCCCATTAGGCCC-AATCACATTCATATT
* *
63396133 GCCCTTTAGGCCCAGTCACATTCATATT
1 GCCCATTAGGCCCAATCACATTCATATT
63396161 CATGCTCACA
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
28 24 0.50
29 24 0.50
ACGTcount: A:0.28, C:0.31, G:0.12, T:0.29
Consensus pattern (28 bp):
GCCCATTAGGCCCAATCACATTCATATT
Found at i:63396404 original size:16 final size:16
Alignment explanation
Indices: 63396375--63396419 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
63396365 AAACGTTCAG
* *
63396375 CTTTTCGACATTTCGA
1 CTTTTCGGCTTTTCGA
*
63396391 CTTTTCGGCTTTTCGG
1 CTTTTCGGCTTTTCGA
*
63396407 CATTTCGGCTTTT
1 CTTTTCGGCTTTT
63396420 GCCGATACAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.09, C:0.24, G:0.18, T:0.49
Consensus pattern (16 bp):
CTTTTCGGCTTTTCGA
Found at i:63396410 original size:24 final size:24
Alignment explanation
Indices: 63396374--63396419 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
63396364 CAAACGTTCA
63396374 GCTTTTCGACATTTCGACTTTTCG
1 GCTTTTCGACATTTCGACTTTTCG
* *
63396398 GCTTTTCGGCATTTCGGCTTTT
1 GCTTTTCGACATTTCGACTTTT
63396420 GCCGATACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.09, C:0.24, G:0.20, T:0.48
Consensus pattern (24 bp):
GCTTTTCGACATTTCGACTTTTCG
Found at i:63397905 original size:22 final size:23
Alignment explanation
Indices: 63397845--63397918 Score: 80
Period size: 22 Copynumber: 3.2 Consensus size: 23
63397835 TAAGCTCCCT
*
63397845 GAGCTGATAACAGTAAGCTCTAAG
1 GAGCTGA-AACAGTAAGCTCTAAC
* * *
63397869 GAGCTGAAACGGTAAGTTCTATC
1 GAGCTGAAACAGTAAGCTCTAAC
63397892 GAGCT-AAACAGTAAGCTC-ATAC
1 GAGCTGAAACAGTAAGCTCTA-AC
63397914 GAGCT
1 GAGCT
63397919 TCGGTGAGTC
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
21 1 0.02
22 17 0.40
23 17 0.40
24 7 0.17
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (23 bp):
GAGCTGAAACAGTAAGCTCTAAC
Found at i:63400034 original size:21 final size:22
Alignment explanation
Indices: 63400004--63400045 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
63399994 TAGTAAAAGT
63400004 CATTTGTCTAACCA-TAAACATG
1 CATTTGTCT-ACCATTAAACATG
63400026 CATTT-TCTACCATTAAACAT
1 CATTTGTCTACCATTAAACAT
63400046 CAAAACACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.21
21 10 0.53
22 5 0.26
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.36
Consensus pattern (22 bp):
CATTTGTCTACCATTAAACATG
Found at i:63405379 original size:32 final size:32
Alignment explanation
Indices: 63405343--63405405 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
63405333 CTATGGGCCA
63405343 TACTGT-TATCTAAAAAGGGCTAAGGCCCAGTT
1 TACTGTAT-TCTAAAAAGGGCTAAGGCCCAGTT
* **
63405375 TACTGTATTCTGAAAAGGGCTTCGGCCCAGT
1 TACTGTATTCTAAAAAGGGCTAAGGCCCAGT
63405406 ACCCGCTGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 26 0.96
33 1 0.04
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.29
Consensus pattern (32 bp):
TACTGTATTCTAAAAAGGGCTAAGGCCCAGTT
Found at i:63410870 original size:39 final size:40
Alignment explanation
Indices: 63410827--63410994 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
63410817 CTCGTTCAAG
* * * *
63410827 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
63410866 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
63410906 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
63410946 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
63410986 TGCCTTCGG
1 TGCCTTCGG
63410995 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:63410978 original size:80 final size:80
Alignment explanation
Indices: 63410862--63411047 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
63410852 AGTAACTCAT
* * *
63410862 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
63410926 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
63410941 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
63411005 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
63411022 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
63411048 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:63411007 original size:40 final size:40
Alignment explanation
Indices: 63410864--63411047 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
63410854 TAACTCATAC
* *
63410864 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
63410904 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
63410944 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
63410984 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
63411025 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
63411048 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 105 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:63418825 original size:39 final size:40
Alignment explanation
Indices: 63418782--63418949 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
63418772 CTCGTTCAAG
* * * *
63418782 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
63418821 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
63418861 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
63418901 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
63418941 TGCCTTCGG
1 TGCCTTCGG
63418950 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:63418933 original size:80 final size:80
Alignment explanation
Indices: 63418817--63419002 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
63418807 AGTAACTCAT
* * *
63418817 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
63418881 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
63418896 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
63418960 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
63418977 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
63419003 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:63418962 original size:40 final size:40
Alignment explanation
Indices: 63418819--63419002 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
63418809 TAACTCATAC
* *
63418819 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
63418859 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
63418899 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
63418939 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
63418980 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
63419003 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 105 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:63422058 original size:41 final size:40
Alignment explanation
Indices: 63421966--63422209 Score: 253
Period size: 40 Copynumber: 6.1 Consensus size: 40
63421956 CGGATGATAA
* * * **
63421966 CCGGGCTAAGTCCTG-AGAGCATTTGAGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTATA-T
* *
63422006 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
63422046 CCCGGGCTAAGTCCCGAAGGCCTTTGTGCAAGTTACTATAT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
63422087 CCGGGC-ACGTCCCGAAGGCATTTGTGCGAATTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * * *
63422126 CCGGGGTAAGTCCCAAAGGCAATTGTGCGAGTTACTCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
63422166 CCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
63422206 CCGG
1 CCGG
63422210 TTAAATTCCG
Statistics
Matches: 168, Mismatches: 31, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
39 35 0.21
40 94 0.56
41 39 0.23
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:63430174 original size:40 final size:40
Alignment explanation
Indices: 63430112--63430341 Score: 202
Period size: 40 Copynumber: 5.8 Consensus size: 40
63430102 CGGATGATAA
* * **
63430112 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAATGGCTAATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAATTACTAATT
* * ** *
63430152 CTGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTA-ATT
*
63430193 CCGGGCTAAGTCCCGAAGGCCTTTGTGC-AAGTTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTAAT-T
* *
63430233 CCGGGC-ACGTCCCGAAGGCATTTGTGCGAATTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAATT
* * * *
63430272 CTGGGCTAAGTCCCAAAGGCAATTGTGCGAGTTACTCTAA--
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTA--CTAATT
* *
63430312 CCGGGCTATGTCCCGAAGGCATTTGAGCGA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGA
63430342 GTAGCTATAT
Statistics
Matches: 153, Mismatches: 28, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
39 32 0.21
40 84 0.55
41 33 0.22
42 4 0.03
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAATT
Found at i:63430207 original size:41 final size:40
Alignment explanation
Indices: 63430154--63430352 Score: 240
Period size: 40 Copynumber: 5.0 Consensus size: 40
63430144 GGCTAATTCT
* *
63430154 GGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT-CC
* *
63430195 GGGCTAAGTCCCGAAGGCCTTTGTGCAAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * * *
63430235 GGGC-ACGTCCCGAAGGCATTTGTGCGAATTACTAAATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * * *
63430274 GGGCTAAGTCCCAAAGGCAATTGTGCGAGTTACTCTAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
63430314 GGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
63430353 TGGTTAAATT
Statistics
Matches: 132, Mismatches: 24, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 35 0.27
40 63 0.48
41 34 0.26
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:63438828 original size:6 final size:6
Alignment explanation
Indices: 63438817--63438853 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
63438807 ATAAAGCCTC
63438817 TTTAAT TTTAAT TTT-AT TTTAAT TTTAAT TTTAAT TT
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TT
63438854 GGGAATTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.17
6 25 0.83
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (6 bp):
TTTAAT
Found at i:63438839 original size:17 final size:17
Alignment explanation
Indices: 63438817--63438849 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
63438807 ATAAAGCCTC
63438817 TTTAATTTTAATTTTAT
1 TTTAATTTTAATTTTAT
63438834 TTTAATTTTAATTTTA
1 TTTAATTTTAATTTTA
63438850 ATTTGGGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTAATTTTAATTTTAT
Found at i:63452152 original size:3 final size:3
Alignment explanation
Indices: 63452146--63452177 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
63452136 ACCACAACTT
63452146 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
63452178 TGATGATGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:63454729 original size:14 final size:13
Alignment explanation
Indices: 63454712--63454766 Score: 58
Period size: 14 Copynumber: 4.2 Consensus size: 13
63454702 GAAGAAACAG
63454712 AAAAGAAAATAAGA
1 AAAAGAAAA-AAGA
* *
63454726 AAAATAAAACAAGG
1 AAAAGAAAA-AAGA
63454740 AAAA-AAAAAAGA
1 AAAAGAAAAAAGA
*
63454752 AAAAGGAAAAAGA
1 AAAAGAAAAAAGA
63454765 AA
1 AA
63454767 GTAAATGAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
12 7 0.20
13 13 0.37
14 15 0.43
ACGTcount: A:0.80, C:0.02, G:0.15, T:0.04
Consensus pattern (13 bp):
AAAAGAAAAAAGA
Found at i:63456785 original size:26 final size:27
Alignment explanation
Indices: 63456725--63456777 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
63456715 TAAAATTTAT
* *
63456725 AAATGACTGTTATGCCCCTATGAGGTA
1 AAATGACTATTATGCCCCTATGAGATA
*
63456752 AAATGACTATTATGCCCTTATGAGAT
1 AAATGACTATTATGCCCCTATGAGAT
63456778 GTATGACTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (27 bp):
AAATGACTATTATGCCCCTATGAGATA
Found at i:63465695 original size:21 final size:21
Alignment explanation
Indices: 63465670--63465711 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
63465660 TCAAGTTTTT
63465670 TGTTCTTGAGGTATCAAGACA
1 TGTTCTTGAGGTATCAAGACA
* *
63465691 TGTTCTTGATGTATCTAGACA
1 TGTTCTTGAGGTATCAAGACA
63465712 CTAGCCCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.38
Consensus pattern (21 bp):
TGTTCTTGAGGTATCAAGACA
Found at i:63468678 original size:40 final size:40
Alignment explanation
Indices: 63468600--63468822 Score: 285
Period size: 40 Copynumber: 5.6 Consensus size: 40
63468590 AACCCAAGTA
* *
63468600 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
63468639 CCTTCGAGTCTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
63468679 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
63468719 CCTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATG
* *
63468761 CCTTCGGGACTTAGCCCGGATACAGTAACT-GCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
63468800 CCTTCGGGACTTAGCCCGAATAT
1 CCTTCGGGACTTAGCCCGGATAT
63468823 CATCCGAATA
Statistics
Matches: 162, Mismatches: 14, Indels: 16
0.84 0.07 0.08
Matches are distributed among these distances:
38 3 0.02
39 38 0.23
40 86 0.53
41 1 0.01
42 31 0.19
43 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:63476788 original size:40 final size:40
Alignment explanation
Indices: 63476710--63476934 Score: 303
Period size: 40 Copynumber: 5.6 Consensus size: 40
63476700 AACCCAAGTA
* *
63476710 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
63476749 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
63476789 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
63476829 CCTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCAAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATG
* * *
63476872 CCTTCGGGACTTAGCCCGGATACAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
63476912 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
63476935 CATCCGAATA
Statistics
Matches: 165, Mismatches: 14, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 13 0.08
40 117 0.71
41 1 0.01
43 34 0.21
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:63476907 original size:83 final size:80
Alignment explanation
Indices: 63476710--63476934 Score: 319
Period size: 83 Copynumber: 2.8 Consensus size: 80
63476700 AACCCAAGTA
* * * *
63476710 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
63476774 TCACTAGCATAAATG
66 TCACTAGCAAAAATG
* *
63476789 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
63476854 -CAACTACTCGCAAAAATG
66 TC-ACTA---GCAAAAATG
* *
63476872 CCTTCGGGACTTAGCCCGGATACAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
63476935 CATCCGAATA
Statistics
Matches: 130, Mismatches: 11, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
79 14 0.11
80 49 0.38
83 67 0.52
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCAAAAATG
Found at i:63476911 original size:123 final size:119
Alignment explanation
Indices: 63476710--63476934 Score: 342
Period size: 123 Copynumber: 1.9 Consensus size: 119
63476700 AACCCAAGTA
* * * *
63476710 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCGGATATAGCAACTCGCAAAAATGCCTTCGGGACTTAGCCCGGATACAGT
* *
63476775 CACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
66 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
63476829 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCAAAAATGCCTTCGGGACTTAGCCCGGATA
1 CCTTCGGGACTTAG-CCGGATATAGC-A--ACTCGCAAAAATGCCTTCGGGACTTAGCCCGGATA
*
63476894 CAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
62 CAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
63476935 CATCCGAATA
Statistics
Matches: 94, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
119 13 0.14
120 10 0.11
121 1 0.01
123 70 0.74
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (119 bp):
CCTTCGGGACTTAGCCGGATATAGCAACTCGCAAAAATGCCTTCGGGACTTAGCCCGGATACAGT
AACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:63481673 original size:26 final size:24
Alignment explanation
Indices: 63481628--63481677 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
63481618 TTGTAAATCA
*
63481628 GAAAAATATCTTTAGAAATTTTCT
1 GAAAAATATCTTCAGAAATTTTCT
*
63481652 GAAATAATCTCTTCAGAGAATTTTCT
1 GAAA-AATATCTTCAGA-AATTTTCT
63481678 CTCTACAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 4 0.18
25 10 0.45
26 8 0.36
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (24 bp):
GAAAAATATCTTCAGAAATTTTCT
Found at i:63484039 original size:19 final size:21
Alignment explanation
Indices: 63484015--63484059 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
63484005 ACATCATTTT
63484015 CAGAAGC-C-TGAAAGCTAAA
1 CAGAAGCTCATGAAAGCTAAA
*
63484034 CAGAAGCTCATGAGAGCTAAA
1 CAGAAGCTCATGAAAGCTAAA
63484055 CAGAA
1 CAGAA
63484060 ATCTGTAAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.30
20 1 0.04
21 15 0.65
ACGTcount: A:0.47, C:0.20, G:0.22, T:0.11
Consensus pattern (21 bp):
CAGAAGCTCATGAAAGCTAAA
Found at i:63484089 original size:21 final size:21
Alignment explanation
Indices: 63484065--63484127 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
63484055 CAGAAATCTG
63484065 TAAGGGTTGAACAAAAGCTCA
1 TAAGGGTTGAACAAAAGCTCA
* * * *
63484086 TAAGAGATGAACGGAAA-CCCA
1 TAAGGGTTGAAC-AAAAGCTCA
* *
63484107 TAAGGGTTAAACAGAAGCTCA
1 TAAGGGTTGAACAAAAGCTCA
63484128 ATAGGGCTGA
Statistics
Matches: 30, Mismatches: 10, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
20 2 0.07
21 25 0.83
22 3 0.10
ACGTcount: A:0.44, C:0.16, G:0.24, T:0.16
Consensus pattern (21 bp):
TAAGGGTTGAACAAAAGCTCA
Found at i:63484139 original size:42 final size:42
Alignment explanation
Indices: 63484030--63484186 Score: 136
Period size: 42 Copynumber: 3.7 Consensus size: 42
63484020 GCCTGAAAGC
* * * * **
63484030 TAAACAGAAGCTCATGAGAGCTAAACAGAAATCTGTAAGGGT
1 TAAACAGAAGCTCATAAGAGCTGAACGGAAACCCATAAGGGT
* * *
63484072 TGAACAAAAGCTCATAAGAGATGAACGGAAACCCATAAGGGT
1 TAAACAGAAGCTCATAAGAGCTGAACGGAAACCCATAAGGGT
* * * *
63484114 TAAACAGAAGCTCA-ATAGGGCTGAACGGAAACTCATATGAGT
1 TAAACAGAAGCTCATA-AGAGCTGAACGGAAACCCATAAGGGT
* * * * *
63484156 TTAATAGAAGCTCGTGAGAGCTAAACGGAAA
1 TAAACAGAAGCTCATAAGAGCTGAACGGAAA
63484187 GTAAACATGA
Statistics
Matches: 91, Mismatches: 22, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
41 1 0.01
42 90 0.99
ACGTcount: A:0.43, C:0.15, G:0.24, T:0.18
Consensus pattern (42 bp):
TAAACAGAAGCTCATAAGAGCTGAACGGAAACCCATAAGGGT
Found at i:63484148 original size:21 final size:22
Alignment explanation
Indices: 63484093--63484148 Score: 53
Period size: 21 Copynumber: 2.6 Consensus size: 22
63484083 TCATAAGAGA
* *
63484093 TGAACGGAAAC-CCATAAGGGT
1 TGAACGGAAACTCAATAAGGGC
* * *
63484114 TAAACAGAAGCTCAAT-AGGGC
1 TGAACGGAAACTCAATAAGGGC
63484135 TGAACGGAAACTCA
1 TGAACGGAAACTCA
63484149 TATGAGTTTA
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
21 23 0.88
22 3 0.12
ACGTcount: A:0.41, C:0.20, G:0.25, T:0.14
Consensus pattern (22 bp):
TGAACGGAAACTCAATAAGGGC
Found at i:63486711 original size:140 final size:140
Alignment explanation
Indices: 63486455--63486738 Score: 430
Period size: 140 Copynumber: 2.0 Consensus size: 140
63486445 GTTTATGAAG
* * *
63486455 AAGAAGGATGGCACGATGCGGTTATGTGTAGACTATATACAGTTGAATAAGTTGAGCATTAAGAA
1 AAGAAGGATGGCACGATGCGGTTATGTGTAAACTATATACAGTTGAATAAGTTCACCATTAAGAA
* * * *
63486520 TAAGTATCCTTTGCCTCAAATTGATGACATATTTTATTAGTTCAGAGGAGCAATGATGTTTTCAA
66 AAAGTATCCTTTGCCTCAAATTGATGACATATTTGATCAGTTCAGAAGAGCAATGATGTTTTCAA
63486585 AGATTAACCT
131 AGATTAACCT
*
63486595 AAGAAGGATGGCACGATGCGGTTATGTAG-AAACTCTATACAGTTGAATAAGTTCACCATTAAGA
1 AAGAAGGATGGCACGATGCGGTTATGT-GTAAACTATATACAGTTGAATAAGTTCACCATTAAGA
63486659 AAAAGTATCCCTTT-CCTCAAATTGATGA-ATTATTTGATCAGTTCAGAAGAGCAATGATGTTTT
65 AAAAGTAT-CCTTTGCCTCAAATTGATGACA-TATTTGATCAGTTCAGAAGAGCAATGATGTTTT
* *
63486722 CGAAGATTGACCT
128 CAAAGATTAACCT
63486735 AAGA
1 AAGA
63486739 TTGGGGTATT
Statistics
Matches: 131, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
139 1 0.01
140 124 0.95
141 6 0.05
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.31
Consensus pattern (140 bp):
AAGAAGGATGGCACGATGCGGTTATGTGTAAACTATATACAGTTGAATAAGTTCACCATTAAGAA
AAAGTATCCTTTGCCTCAAATTGATGACATATTTGATCAGTTCAGAAGAGCAATGATGTTTTCAA
AGATTAACCT
Found at i:63488512 original size:26 final size:26
Alignment explanation
Indices: 63488476--63488525 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
63488466 CCATTTGAAT
63488476 CATTGTATGGTAGGAAGTGTAGAAAG
1 CATTGTATGGTAGGAAGTGTAGAAAG
63488502 CATTGTATGGTAGGAAGTGTAGAA
1 CATTGTATGGTAGGAAGTGTAGAA
63488526 CTCCTTTGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.04, G:0.34, T:0.28
Consensus pattern (26 bp):
CATTGTATGGTAGGAAGTGTAGAAAG
Found at i:63491680 original size:42 final size:42
Alignment explanation
Indices: 63491634--63491735 Score: 143
Period size: 42 Copynumber: 2.4 Consensus size: 42
63491624 TAAGACTACA
*
63491634 TATAAGACCATATCTGGGATATGACATC-AGTATGAGACTTCG
1 TATAAGACCATATCTGGGATATGACATCGA-TATGAGACTTAG
* *
63491676 TATAAGACCATATCTGGGATATGGCATCGATATGAGACTTAT
1 TATAAGACCATATCTGGGATATGACATCGATATGAGACTTAG
* *
63491718 TGTAAGACCATAGCTGGG
1 TATAAGACCATATCTGGG
63491736 TTATTGGCAT
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
42 53 0.98
43 1 0.02
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (42 bp):
TATAAGACCATATCTGGGATATGACATCGATATGAGACTTAG
Found at i:63493731 original size:17 final size:17
Alignment explanation
Indices: 63493709--63493742 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
63493699 CACTAATATG
63493709 AAAATGAAATGACAATA
1 AAAATGAAATGACAATA
*
63493726 AAAATGTAATGACAATA
1 AAAATGAAATGACAATA
63493743 TATACTTACC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.62, C:0.06, G:0.12, T:0.21
Consensus pattern (17 bp):
AAAATGAAATGACAATA
Found at i:63494766 original size:31 final size:31
Alignment explanation
Indices: 63494725--63494823 Score: 162
Period size: 31 Copynumber: 3.2 Consensus size: 31
63494715 AAAGGATCAA
*
63494725 ACAGTAGTATAGACTGAATTATAAATGGTAGT
1 ACAG-AGTATAGACTGAGTTATAAATGGTAGT
*
63494757 ACAGGGTATAGACTGAGTTATAAATGGTAGT
1 ACAGAGTATAGACTGAGTTATAAATGGTAGT
*
63494788 ACAGAGTATAGACTGAGTTATAAATGGTAAT
1 ACAGAGTATAGACTGAGTTATAAATGGTAGT
63494819 ACAGA
1 ACAGA
63494824 CTTATGGAAT
Statistics
Matches: 63, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
31 59 0.94
32 4 0.06
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.28
Consensus pattern (31 bp):
ACAGAGTATAGACTGAGTTATAAATGGTAGT
Done.