Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 194 of 333
Found at i:63497690 original size:5 final size:5
Alignment explanation
Indices: 63497680--63497714 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
63497670 ATATACTCAT
* *
63497680 AATTC AATTC AATTC AATCC AATCC AATTC AATTC
1 AATTC AATTC AATTC AATTC AATTC AATTC AATTC
63497715 TACAATACCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.40, C:0.26, G:0.00, T:0.34
Consensus pattern (5 bp):
AATTC
Found at i:63498394 original size:19 final size:19
Alignment explanation
Indices: 63498370--63498410 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
63498360 ATTTCGTTTG
63498370 TTTTGTTTCTTTAATTCCT
1 TTTTGTTTCTTTAATTCCT
* *
63498389 TTTTGTTTCTTTTATTTCT
1 TTTTGTTTCTTTAATTCCT
63498408 TTT
1 TTT
63498411 ATTTAATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.07, C:0.12, G:0.05, T:0.76
Consensus pattern (19 bp):
TTTTGTTTCTTTAATTCCT
Found at i:63503471 original size:40 final size:40
Alignment explanation
Indices: 63503416--63503492 Score: 154
Period size: 40 Copynumber: 1.9 Consensus size: 40
63503406 TGTTTCTTTT
63503416 GAAAACTAGAGTTTTCCTATCTCTAGAAGTTATAAACTAG
1 GAAAACTAGAGTTTTCCTATCTCTAGAAGTTATAAACTAG
63503456 GAAAACTAGAGTTTTCCTATCTCTAGAAGTTATAAAC
1 GAAAACTAGAGTTTTCCTATCTCTAGAAGTTATAAAC
63503493 CAAAGCAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (40 bp):
GAAAACTAGAGTTTTCCTATCTCTAGAAGTTATAAACTAG
Found at i:63504214 original size:27 final size:27
Alignment explanation
Indices: 63504176--63504335 Score: 205
Period size: 27 Copynumber: 5.9 Consensus size: 27
63504166 ATATATACAT
* * *
63504176 CACATAGGGGCAAAACAGTTATCTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
63504203 CATATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
63504230 CACATAAGGGAAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
63504257 CACATAAAGGAAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
63504284 CACATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
63504311 CACATTAGGGCAAGAA-AGTCATTTT
1 CACATAAGGGCAA-AACAGTCATTTT
63504336 GATCAATCAA
Statistics
Matches: 118, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
27 116 0.98
28 2 0.02
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.24
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:63515067 original size:36 final size:36
Alignment explanation
Indices: 63515027--63515106 Score: 142
Period size: 36 Copynumber: 2.2 Consensus size: 36
63515017 AAATGTTCAA
*
63515027 GAAATGGTTGTTGTTCATGTTATTTGGATGAAAAAG
1 GAAATGGTTGTTGTTCATCTTATTTGGATGAAAAAG
63515063 GAAATGGTTGTTGTTCATCTTATTTGGATGAAAAAG
1 GAAATGGTTGTTGTTCATCTTATTTGGATGAAAAAG
*
63515099 AAAATGGT
1 GAAATGGT
63515107 AGTTAGGTGA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.38
Consensus pattern (36 bp):
GAAATGGTTGTTGTTCATCTTATTTGGATGAAAAAG
Found at i:63516470 original size:40 final size:40
Alignment explanation
Indices: 63516414--63516621 Score: 267
Period size: 40 Copynumber: 5.2 Consensus size: 40
63516404 CATTTGAATG
*
63516414 ATATCCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
63516454 TTATCCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
63516494 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
63516534 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * * *
63516574 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATT
63516614 ATATCCGG
1 ATATCCGG
63516622 CTAAATTCCG
Statistics
Matches: 153, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
39 2 0.01
40 148 0.97
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
ATATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:63524842 original size:40 final size:40
Alignment explanation
Indices: 63524786--63524993 Score: 267
Period size: 40 Copynumber: 5.2 Consensus size: 40
63524776 CATTTGAATG
*
63524786 ATATCCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
63524826 TTATCCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
63524866 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
63524906 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * * *
63524946 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATT
63524986 ATATCCGG
1 ATATCCGG
63524994 CTAAATTCCG
Statistics
Matches: 153, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
39 2 0.01
40 148 0.97
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
ATATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:63551928 original size:9 final size:9
Alignment explanation
Indices: 63551914--63551945 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
63551904 TCTCTAACGC
63551914 CCCAAAAAT
1 CCCAAAAAT
63551923 CCC-AAAA-
1 CCCAAAAAT
63551930 CCCAAAAAT
1 CCCAAAAAT
63551939 CCCAAAA
1 CCCAAAA
63551946 TCCTAAACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
7 3 0.14
8 8 0.38
9 10 0.48
ACGTcount: A:0.56, C:0.38, G:0.00, T:0.06
Consensus pattern (9 bp):
CCCAAAAAT
Found at i:63551935 original size:16 final size:16
Alignment explanation
Indices: 63551914--63551945 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
63551904 TCTCTAACGC
63551914 CCCAAAAATCCCAAAA
1 CCCAAAAATCCCAAAA
63551930 CCCAAAAATCCCAAAA
1 CCCAAAAATCCCAAAA
63551946 TCCTAAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.38, G:0.00, T:0.06
Consensus pattern (16 bp):
CCCAAAAATCCCAAAA
Found at i:63553491 original size:29 final size:28
Alignment explanation
Indices: 63553422--63553555 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 28
63553412 ATAATGTGAT
* *
63553422 TTGGGCCGGATGGGCCATATAAATGAGA
1 TTGGGCCTGATGGGCCATATAAATGAAA
* *
63553450 TTGGGCCTAATGGGCCATATGAATGTAAA
1 TTGGGCCTGATGGGCCATATAAATG-AAA
63553479 TTGGGCCTGATGGGCCATATAAACGTG-AA
1 TTGGGCCTGATGGGCCATATAAA--TGAAA
* * *
63553508 TTGGGCCGGATGGGCCATTTAAATGAGA
1 TTGGGCCTGATGGGCCATATAAATGAAA
63553536 TTGGGCCT-AGTGGGCCATAT
1 TTGGGCCTGA-TGGGCCATAT
63553556 TCATGTATGT
Statistics
Matches: 90, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
27 3 0.03
28 39 0.43
29 46 0.51
31 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATAAATGAAA
Found at i:63553499 original size:57 final size:56
Alignment explanation
Indices: 63553422--63553555 Score: 164
Period size: 57 Copynumber: 2.4 Consensus size: 56
63553412 ATAATGTGAT
* * *
63553422 TTGGGCCGGATGGGCCATATAAA-TGAGATTGGGCCTAATGGGCCATATGAATGTAAA
1 TTGGGCCTGATGGGCCATATAAACTGA-ATTGGGCCGAATGGGCCATATAAATG-AAA
* * *
63553479 TTGGGCCTGATGGGCCATATAAACGTGAATTGGGCCGGATGGGCCATTTAAATGAGA
1 TTGGGCCTGATGGGCCATATAAAC-TGAATTGGGCCGAATGGGCCATATAAATGAAA
63553536 TTGGGCCT-AGTGGGCCATAT
1 TTGGGCCTGA-TGGGCCATAT
63553556 TCATGTATGT
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
56 1 0.01
57 42 0.62
58 22 0.32
59 3 0.04
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (56 bp):
TTGGGCCTGATGGGCCATATAAACTGAATTGGGCCGAATGGGCCATATAAATGAAA
Found at i:63555236 original size:40 final size:40
Alignment explanation
Indices: 63555192--63555376 Score: 282
Period size: 40 Copynumber: 4.7 Consensus size: 40
63555182 GCCACTAGCT
* * * *
63555192 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
63555232 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
*
63555271 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
* * *
63555311 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
*
63555351 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63555377 ATTAGCCACT
Statistics
Matches: 136, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
39 37 0.27
40 99 0.73
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
Found at i:63555397 original size:40 final size:39
Alignment explanation
Indices: 63555192--63555414 Score: 256
Period size: 40 Copynumber: 5.6 Consensus size: 39
63555182 GCCACTAGCT
* * *
63555192 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAG-AACTCGCA
*
63555232 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATAT-AGAACTCGCA
63555271 CAAATGCCTTCGGGACTTAGCCCGGATATA-ATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGA-A-CTCGCA
* *
63555311 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAG-AACTCGCA
* * * *
63555351 CGAATGCCTTCGGGACTTAGCCCGGA-ATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAG-AACTCGCA
63555391 CAAATG-CTCTCGGGACTTAGCCCG
1 CAAATGCCT-TCGGGACTTAGCCCG
63555415 ATTATCATCC
Statistics
Matches: 162, Mismatches: 13, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
38 1 0.01
39 40 0.25
40 120 0.74
42 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGAACTCGCA
Found at i:63557925 original size:40 final size:41
Alignment explanation
Indices: 63557866--63558017 Score: 211
Period size: 40 Copynumber: 3.8 Consensus size: 41
63557856 CATTTGAATG
* * *
63557866 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
63557906 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
63557946 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
63557986 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
63558018 TTGTGGTTAT
Statistics
Matches: 102, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 99 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:63558029 original size:80 final size:80
Alignment explanation
Indices: 63557866--63558037 Score: 213
Period size: 80 Copynumber: 2.2 Consensus size: 80
63557856 CATTTGAATG
* * * * *
63557866 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
* *
63557931 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* *
63557946 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGC
** *
63558010 AATTGTGCTTGTGGTT
65 AATTGTGCGAGTGGAT
63558026 ATATCC-GGCTAA
1 ATATCCGGGCTAA
63558038 ATTCCGAAGA
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 6 0.08
80 71 0.90
81 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
ATTGTGCGAGTGGAT
Found at i:63563912 original size:17 final size:17
Alignment explanation
Indices: 63563890--63563922 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
63563880 AATATGATAC
63563890 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
63563907 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
63563923 AATCAGGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:63563923 original size:18 final size:17
Alignment explanation
Indices: 63563890--63563923 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
63563880 AATATGATAC
*
63563890 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
63563907 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
63563924 ATCAGGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:63564234 original size:14 final size:15
Alignment explanation
Indices: 63564215--63564298 Score: 73
Period size: 19 Copynumber: 5.1 Consensus size: 15
63564205 AATCATATCT
63564215 TCTAAGATTG-CATA
1 TCTAAGATTGACATA
63564229 TCTAAGATTGCAATCATA
1 TCTAAGATTG--A-CATA
63564247 TCTAAGATTGTATCATA
1 TCTAAGATTG-A-CATA
63564264 TCTAAGATTGCATATCATA
1 TCTAAGATTG---A-CATA
63564283 TCTAAGATTG-CATA
1 TCTAAGATTGACATA
63564297 TC
1 TC
63564299 ATTGTAGATT
Statistics
Matches: 63, Mismatches: 1, Indels: 12
0.83 0.01 0.16
Matches are distributed among these distances:
14 16 0.25
17 16 0.25
18 14 0.22
19 17 0.27
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (15 bp):
TCTAAGATTGACATA
Found at i:63564248 original size:35 final size:32
Alignment explanation
Indices: 63564215--63564298 Score: 132
Period size: 35 Copynumber: 2.5 Consensus size: 32
63564205 AATCATATCT
63564215 TCTAAGATTGCATATCTAAGATTGCAATCATA
1 TCTAAGATTGCATATCTAAGATTGCAATCATA
63564247 TCTAAGATTGTATCATATCTAAGATTGCATATCATA
1 TCTAAGATTG---CATATCTAAGATTGCA-ATCATA
63564283 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
63564299 ATTGTAGATT
Statistics
Matches: 48, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
32 10 0.21
33 6 0.12
35 16 0.33
36 16 0.33
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (32 bp):
TCTAAGATTGCATATCTAAGATTGCAATCATA
Found at i:63564281 original size:19 final size:19
Alignment explanation
Indices: 63564225--63564300 Score: 131
Period size: 19 Copynumber: 4.2 Consensus size: 19
63564215 TCTAAGATTG
63564225 CATATCTAAGATTGCA-AT
1 CATATCTAAGATTGCATAT
63564243 CATATCTAAGATTG--TAT
1 CATATCTAAGATTGCATAT
63564260 CATATCTAAGATTGCATAT
1 CATATCTAAGATTGCATAT
63564279 CATATCTAAGATTGCATAT
1 CATATCTAAGATTGCATAT
63564298 CAT
1 CAT
63564301 TGTAGATTAT
Statistics
Matches: 55, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.29
18 14 0.25
19 25 0.45
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
CATATCTAAGATTGCATAT
Found at i:63564715 original size:45 final size:45
Alignment explanation
Indices: 63564651--63564847 Score: 270
Period size: 45 Copynumber: 4.4 Consensus size: 45
63564641 GGAAGGCGAT
* * *
63564651 ATCTGCTATCTTTGATCTACTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAA
* * *
63564696 ATCTGTTACCTTTGATCTACTCCCCGTTTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAA
* *
63564741 ATCTGCT-TCTTCAATCTACTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAA
* * *
63564785 ATCTGTTATCTCCGATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAA
* *
63564830 ATCTGTCATCTTGGATCT
1 ATCTGTTATCTTCGATCT
63564848 GCTTCGATGT
Statistics
Matches: 133, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
44 39 0.29
45 94 0.71
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.32
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAA
Found at i:63564817 original size:89 final size:90
Alignment explanation
Indices: 63564651--63564834 Score: 280
Period size: 89 Copynumber: 2.1 Consensus size: 90
63564641 GGAAGGCGAT
** **
63564651 ATCTGCTATCTTTGATCTACTCCCCGTCTAATACAGAGACGCCAAATCTGTTACCTTTGATCTAC
1 ATCTGCTATCTTCAATCTACTCCCCGTCTAATACAGAGACGCCAAATCTGTTACCTCCGATCTAC
*
63564716 TCCCCGTTTAATACAGAGATGCCAA
66 TCCCCGTCTAATACAGAGATGCCAA
* * * *
63564741 ATCTGCT-TCTTCAATCTACTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGC
1 ATCTGCTATCTTCAATCTACTCCCCGTCTAATACAGAGACGCCAAATCTGTTACCTCCGATCTAC
63564805 TCCCCGTCTAATACAGAGATGCCAA
66 TCCCCGTCTAATACAGAGATGCCAA
63564830 ATCTG
1 ATCTG
63564835 TCATCTTGGA
Statistics
Matches: 85, Mismatches: 9, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
89 78 0.92
90 7 0.08
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.31
Consensus pattern (90 bp):
ATCTGCTATCTTCAATCTACTCCCCGTCTAATACAGAGACGCCAAATCTGTTACCTCCGATCTAC
TCCCCGTCTAATACAGAGATGCCAA
Found at i:63564993 original size:78 final size:78
Alignment explanation
Indices: 63564864--63565157 Score: 455
Period size: 78 Copynumber: 3.8 Consensus size: 78
63564854 ATGTAAACAC
* *
63564864 ATGAAGGTCAGGTCTTCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
63564929 TGGATCTGCTTCA
66 TGGATCTGCTTCA
*
63564942 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
63565006 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * *
63565020 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCATCTAATACAGTGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
63565085 TGGATCTACTTCA
66 TGGATCTGCTTCA
* * * * **
63565098 ATGAAGGTCAGATCTGCTATGTCTTTGATCTACTCTCCGTCGAATATGGAGATGCCAAAT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAAT
63565158 ATGTTTCTTC
Statistics
Matches: 197, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
77 2 0.01
78 193 0.98
79 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:63565482 original size:220 final size:220
Alignment explanation
Indices: 63565099--63565689 Score: 961
Period size: 220 Copynumber: 2.7 Consensus size: 220
63565089 TCTACTTCAA
* * * *
63565099 TGAAGGTCAGATCTGCTATGTCTTTGATCTACTCTCCGTCGAATATGGAGATGCCAAATATGTTT
1 TGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
** *
63565164 CTTCGATTTGTTCTCTGA-AAGTA-AAGAGATGCCAAATCATCTTAGATCTGCGTCAGCGTAAAC
66 CTTCGATTTGTTCTCTGACAA-TACAA-AGATGTTAAATCATCTTAGATCTGCTTCAGCGTAAAC
*
63565227 ACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTATCAACGCAAGGATGCCAAATCATC
129 ACGTGAAAGCCAAATCTGCTATGTCTTCAATCTGCTCCTTATCAACGCAAGGATGCCAAATCATC
*
63565292 TTGGATCTACTTCGAAGTGAAGACATC
194 TTGGATCTACTTCGAAGTGAAAACATC
*
63565319 TGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTTCGTCGAATATGGAGATGCCAAATCTGTTT
1 TGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
*
63565384 CTTCGATTTGTTCTCTGACAATACAAAGATGTTAAATCATCTTAGATCTGCTTCAGTGTAAACAC
66 CTTCGATTTGTTCTCTGACAATACAAAGATGTTAAATCATCTTAGATCTGCTTCAGCGTAAACAC
*
63565449 GTGAAAGCCAAATCTGCTATGTCTTCAATCTGCTCCTTTTCAACGCAAGGATGCCAAATCATCTT
131 GTGAAAGCCAAATCTGCTATGTCTTCAATCTGCTCCTTATCAACGCAAGGATGCCAAATCATCTT
*
63565514 GGATCTACTTCGATGTGAAAACATC
196 GGATCTACTTCGAAGTGAAAACATC
* *
63565539 CGAAGGTTAGATCTGCTATATCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
1 TGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
* * *
63565604 CTTCGATTTATTCTCTGACAATACAGAGATGTTAAATCATCTTGGATCTGCTTCAGCGTAAACAC
66 CTTCGATTTGTTCTCTGACAATACAAAGATGTTAAATCATCTTAGATCTGCTTCAGCGTAAACAC
* * *
63565669 CTGAAGGTCAAATCTGCTATG
131 GTGAAAGCCAAATCTGCTATG
63565690 CTTTAGCCTG
Statistics
Matches: 346, Mismatches: 23, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
220 342 0.99
221 4 0.01
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.32
Consensus pattern (220 bp):
TGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
CTTCGATTTGTTCTCTGACAATACAAAGATGTTAAATCATCTTAGATCTGCTTCAGCGTAAACAC
GTGAAAGCCAAATCTGCTATGTCTTCAATCTGCTCCTTATCAACGCAAGGATGCCAAATCATCTT
GGATCTACTTCGAAGTGAAAACATC
Found at i:63567463 original size:40 final size:40
Alignment explanation
Indices: 63567373--63567539 Score: 201
Period size: 40 Copynumber: 4.2 Consensus size: 40
63567363 CCTCGTTCAC
* * * * * *
63567373 ATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-C
1 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
* *
63567412 ATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACGA
1 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
*
63567452 ATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACGA
1 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
* * * *
63567492 ATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACAA
1 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
*
63567532 AGGCCTTC
1 ATGCCTTC
63567540 AGATCTTAGT
Statistics
Matches: 110, Mismatches: 17, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 32 0.29
40 78 0.71
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.24
Consensus pattern (40 bp):
ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
Found at i:63582997 original size:56 final size:56
Alignment explanation
Indices: 63582935--63583133 Score: 310
Period size: 56 Copynumber: 3.6 Consensus size: 56
63582925 ATCGCAATAC
* * * * *
63582935 ATGAATGTATGTATGACCATGAGGTTAA-AACTCATGGCAAGATCTAATATGACTAA
1 ATGAATGTATGTAAGACCATGAGGTTAAGACCT-ATGGCAAGATCTGATATAACTGA
* *
63582991 ATGAATGTATGTAAGACCATGAGGTTAAGACCTATGGTAAGATCTGATATTACTGA
1 ATGAATGTATGTAAGACCATGAGGTTAAGACCTATGGCAAGATCTGATATAACTGA
63583047 ATGAATGTATGTAAGACCATGAGGTTAAGACCTATGGCAAGATCTGATATAACTGA
1 ATGAATGTATGTAAGACCATGAGGTTAAGACCTATGGCAAGATCTGATATAACTGA
*
63583103 ATGAATGTATGTAAGACCATGTGGTTAAGAC
1 ATGAATGTATGTAAGACCATGAGGTTAAGAC
63583134 ACAAGGCATT
Statistics
Matches: 133, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
56 130 0.98
57 3 0.02
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.29
Consensus pattern (56 bp):
ATGAATGTATGTAAGACCATGAGGTTAAGACCTATGGCAAGATCTGATATAACTGA
Found at i:63585420 original size:21 final size:21
Alignment explanation
Indices: 63585370--63585487 Score: 61
Period size: 20 Copynumber: 5.9 Consensus size: 21
63585360 AAACAAATAC
*
63585370 CTCATATTTTTTTGGTATTCT
1 CTCATAATTTTTTGGTATTCT
* *
63585391 CTAAT-ATTTTTTGTTATTC-
1 CTCATAATTTTTTGGTATTCT
* **
63585410 CTTCATAA-TTTTGGGTACAC-
1 C-TCATAATTTTTTGGTATTCT
* * *
63585430 CTTCATAA-TTATTGGTAATCC
1 C-TCATAATTTTTTGGTATTCT
* *
63585451 CTCATAA-TTTTTAGTGTTCT
1 CTCATAATTTTTTGGTATTCT
*
63585471 CTCATTA-TTTTTGGTAT
1 CTCATAATTTTTTGGTAT
63585488 GCCACTAAAA
Statistics
Matches: 74, Mismatches: 20, Indels: 7
0.73 0.20 0.07
Matches are distributed among these distances:
19 1 0.01
20 67 0.91
21 6 0.08
ACGTcount: A:0.21, C:0.15, G:0.10, T:0.53
Consensus pattern (21 bp):
CTCATAATTTTTTGGTATTCT
Found at i:63585421 original size:20 final size:20
Alignment explanation
Indices: 63585398--63585462 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
63585388 TCTCTAATAT
* *
63585398 TTTTTGTTATTCCTTCATAA
1 TTTTTGGTAATCCTTCATAA
*
63585418 TTTTGGGTACA-CCTTCATAA
1 TTTTTGGTA-ATCCTTCATAA
* *
63585438 TTATTGGTAATCCCTCATAA
1 TTTTTGGTAATCCTTCATAA
63585458 TTTTT
1 TTTTT
63585463 AGTGTTCTCT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
19 1 0.03
20 35 0.97
ACGTcount: A:0.23, C:0.17, G:0.09, T:0.51
Consensus pattern (20 bp):
TTTTTGGTAATCCTTCATAA
Found at i:63585611 original size:22 final size:22
Alignment explanation
Indices: 63585568--63585612 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
63585558 ATATTTTTGC
***
63585568 ATACTAATAAATTTTGTTATAT
1 ATACTAATAAATTTTAAAATAT
63585590 ATACTAATAAATTTTAAAATAT
1 ATACTAATAAATTTTAAAATAT
63585612 A
1 A
63585613 AATGACCACC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.44
Consensus pattern (22 bp):
ATACTAATAAATTTTAAAATAT
Found at i:63593563 original size:42 final size:42
Alignment explanation
Indices: 63593451--63593572 Score: 165
Period size: 43 Copynumber: 2.9 Consensus size: 42
63593441 TACTGTACCA
* *
63593451 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
* * *
63593493 ATGCCA-ATTGCCTAGCTATGGTCTTACACGAAATCTCATATCG
1 ATGCCATA-T-CCCAGATATGGTCTTACACGTAATCTCATATCG
*
63593536 ATTCCATATCCCAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
63593573 GTAACCTTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
41 1 0.01
42 32 0.47
43 34 0.50
44 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:63595733 original size:21 final size:20
Alignment explanation
Indices: 63595707--63595752 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
63595697 TCCCTTATAA
*
63595707 TTTTTGGTACTCACCTCATTT
1 TTTTTGGTACTC-CCTCATGT
*
63595728 TTTTTGGTATTCCCTCATGT
1 TTTTTGGTACTCCCTCATGT
63595748 TTTTT
1 TTTTT
63595753 AATACTCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.11, C:0.20, G:0.11, T:0.59
Consensus pattern (20 bp):
TTTTTGGTACTCCCTCATGT
Found at i:63595743 original size:20 final size:22
Alignment explanation
Indices: 63595707--63595752 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
63595697 TCCCTTATAA
63595707 TTTTTGGTACTCACCTCAT-TT
1 TTTTTGGTACTCACCTCATGTT
*
63595728 TTTTTGGTATTC-CCTCATGTT
1 TTTTTGGTACTCACCTCATGTT
63595749 TTTT
1 TTTT
63595753 AATACTCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.11, C:0.20, G:0.11, T:0.59
Consensus pattern (22 bp):
TTTTTGGTACTCACCTCATGTT
Found at i:63595829 original size:20 final size:21
Alignment explanation
Indices: 63595773--63595830 Score: 73
Period size: 21 Copynumber: 2.7 Consensus size: 21
63595763 AAATTATGAG
63595773 GTACTACAAAAAATTATAAAGAA
1 GTAC-ACAAAAAA-TATAAAGAA
* *
63595796 GTACAAAAAAAATATTAAGAA
1 GTACACAAAAAATATAAAGAA
63595817 GTAC-CAAAAAATAT
1 GTACACAAAAAATAT
63595831 GAGGGAATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 9 0.28
21 12 0.38
22 7 0.22
23 4 0.12
ACGTcount: A:0.62, C:0.09, G:0.09, T:0.21
Consensus pattern (21 bp):
GTACACAAAAAATATAAAGAA
Found at i:63596174 original size:19 final size:20
Alignment explanation
Indices: 63596130--63596173 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
63596120 AGGAAGCATC
*
63596130 AAAAATTTGGAGGGAATATA
1 AAAAATTTGGAGAGAATATA
63596150 AAAAATTAT-GAGAGAATATA
1 AAAAATT-TGGAGAGAATATA
63596170 AAAA
1 AAAA
63596174 TATAAGAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 21 0.95
21 1 0.05
ACGTcount: A:0.59, C:0.00, G:0.18, T:0.23
Consensus pattern (20 bp):
AAAAATTTGGAGAGAATATA
Found at i:63596244 original size:25 final size:27
Alignment explanation
Indices: 63596209--63596260 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
63596199 GAAGAACCAC
* *
63596209 CAAAAATTATAAGGAAA-TATCAAAAA
1 CAAAAATTATAAGAAAAGTACCAAAAA
63596235 CAAAAA-TATAAGAAAAGTACCAAAAA
1 CAAAAATTATAAGAAAAGTACCAAAAA
63596261 TTTTTTAGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.67, C:0.10, G:0.08, T:0.15
Consensus pattern (27 bp):
CAAAAATTATAAGAAAAGTACCAAAAA
Found at i:63596300 original size:19 final size:20
Alignment explanation
Indices: 63596207--63596324 Score: 69
Period size: 20 Copynumber: 5.6 Consensus size: 20
63596197 ATGAAGAACC
63596207 ACCAAAAATTATAAGGAAAT
1 ACCAAAAATTATAAGGAAAT
*
63596227 ATCAAAAACAAAAA-TATAAGAAAAGT
1 A-C-----CAAAAATTATAAGGAAA-T
* * *
63596253 ACCAAAAATTTTTTAGGAAGT
1 ACCAAAAA-TTATAAGGAAAT
* *
63596274 ATCAAAAATTATAAGGGAAT
1 ACCAAAAATTATAAGGAAAT
** *
63596294 A-CAAAAAAAATGAGGAAAT
1 ACCAAAAATTATAAGGAAAT
63596313 ACCAAAAATTAT
1 ACCAAAAATTAT
63596325 GCGATAATAC
Statistics
Matches: 72, Mismatches: 16, Indels: 20
0.67 0.15 0.19
Matches are distributed among these distances:
19 15 0.21
20 24 0.33
21 9 0.12
22 6 0.08
25 10 0.14
26 8 0.11
ACGTcount: A:0.59, C:0.08, G:0.11, T:0.21
Consensus pattern (20 bp):
ACCAAAAATTATAAGGAAAT
Found at i:63596735 original size:20 final size:20
Alignment explanation
Indices: 63596651--63596735 Score: 82
Period size: 20 Copynumber: 4.2 Consensus size: 20
63596641 AGAAAGTATG
* *
63596651 AAAAACTATAAGGAAATACC
1 AAAAATTATGAGGAAATACC
*
63596671 -AAGATTAATGAGGAAATACC
1 AAAAATT-ATGAGGAAATACC
* ** *
63596691 AAAACTTATGAGGATGTATC
1 AAAAATTATGAGGAAATACC
*
63596711 AAAAATTACGAGGAAATACC
1 AAAAATTATGAGGAAATACC
63596731 AAAAA
1 AAAAA
63596736 ATATAATAAA
Statistics
Matches: 50, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
19 4 0.08
20 42 0.84
21 4 0.08
ACGTcount: A:0.54, C:0.12, G:0.15, T:0.19
Consensus pattern (20 bp):
AAAAATTATGAGGAAATACC
Found at i:63596931 original size:19 final size:21
Alignment explanation
Indices: 63596899--63596944 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
63596889 AGATGTACAA
*
63596899 AAAAAATTACGAGAGAATA-T
1 AAAAAATTACGAGAAAATACT
*
63596919 AAAAAA-TATGAGAAAATACT
1 AAAAAATTACGAGAAAATACT
63596939 AAAAAA
1 AAAAAA
63596945 AGTACTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.67, C:0.04, G:0.11, T:0.17
Consensus pattern (21 bp):
AAAAAATTACGAGAAAATACT
Found at i:63598294 original size:19 final size:18
Alignment explanation
Indices: 63598265--63598315 Score: 70
Period size: 19 Copynumber: 2.8 Consensus size: 18
63598255 GTTTCAAGTT
63598265 TTTTTAATTAATAT-ATA
1 TTTTTAATTAATATCATA
63598282 TTTTTATATTTAAT-TCATA
1 TTTTTA-A-TTAATATCATA
63598301 TTTTTAATTAATATC
1 TTTTTAATTAATATC
63598316 TCTTTTATTC
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
17 11 0.37
18 5 0.17
19 14 0.47
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTTTAATTAATATCATA
Found at i:63598321 original size:17 final size:17
Alignment explanation
Indices: 63598265--63598321 Score: 62
Period size: 17 Copynumber: 3.2 Consensus size: 17
63598255 GTTTCAAGTT
*
63598265 TTTTTAATTAATATATA
1 TTTTTAATTAATATCTA
63598282 TTTTTATATTTAAT-TCATA
1 TTTTTA-A-TTAATATC-TA
*
63598301 TTTTTAATTAATATCTC
1 TTTTTAATTAATATCTA
63598318 TTTT
1 TTTT
63598322 ATTCATAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
17 16 0.47
18 5 0.15
19 13 0.38
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTTTAATTAATATCTA
Found at i:63599444 original size:31 final size:31
Alignment explanation
Indices: 63599407--63599466 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
63599397 TTTGTAGTCC
* *
63599407 AATTTGGTTCCTAAGCTTAACACTTTTTCCT
1 AATTTGGTACCTAAACTTAACACTTTTTCCT
*
63599438 AATTTGGTACCTAAACTTGACACTTTTTC
1 AATTTGGTACCTAAACTTAACACTTTTTC
63599467 TTAAGTGGGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.25, C:0.22, G:0.10, T:0.43
Consensus pattern (31 bp):
AATTTGGTACCTAAACTTAACACTTTTTCCT
Found at i:63600027 original size:36 final size:35
Alignment explanation
Indices: 63599951--63600028 Score: 102
Period size: 35 Copynumber: 2.2 Consensus size: 35
63599941 TGCCAAGTAG
* * * *
63599951 AAAAAAAATGTCAAGTTCAGGTACCAAATTGGGCC
1 AAAAAAAATGTCAAGTTCAAGTAACAAATTGAGCA
* *
63599986 CAAAAAAATGTCAATTTCAAGTAACAAATTGAGCA
1 AAAAAAAATGTCAAGTTCAAGTAACAAATTGAGCA
63600021 AAAAAAAA
1 AAAAAAAA
63600029 AGTTTAGGTA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.53, C:0.14, G:0.14, T:0.19
Consensus pattern (35 bp):
AAAAAAAATGTCAAGTTCAAGTAACAAATTGAGCA
Found at i:63600727 original size:13 final size:13
Alignment explanation
Indices: 63600709--63600733 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63600699 TAAAAGAGAT
63600709 ATTAATTAAAAAG
1 ATTAATTAAAAAG
63600722 ATTAATTAAAAA
1 ATTAATTAAAAA
63600734 TAAAAATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (13 bp):
ATTAATTAAAAAG
Found at i:63601981 original size:17 final size:19
Alignment explanation
Indices: 63601950--63601987 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
63601940 CGCTGCTATA
63601950 TTTTCTTTCAGTGTT-TTC
1 TTTTCTTTCAGTGTTCTTC
*
63601968 TTTT-TTTCATTGTTCTTC
1 TTTTCTTTCAGTGTTCTTC
63601986 TT
1 TT
63601988 CGACTATTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.05, C:0.16, G:0.08, T:0.71
Consensus pattern (19 bp):
TTTTCTTTCAGTGTTCTTC
Found at i:63606102 original size:16 final size:16
Alignment explanation
Indices: 63606077--63606109 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
63606067 ATTCAATTGA
63606077 TGCATAGGATTTTAAG
1 TGCATAGGATTTTAAG
*
63606093 TGCATTGGATTTTAAG
1 TGCATAGGATTTTAAG
63606109 T
1 T
63606110 CTAGATTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.06, G:0.24, T:0.42
Consensus pattern (16 bp):
TGCATAGGATTTTAAG
Found at i:63610060 original size:19 final size:19
Alignment explanation
Indices: 63610024--63610082 Score: 66
Period size: 19 Copynumber: 3.0 Consensus size: 19
63610014 TCACAACAAA
*
63610024 AATTTT-AAATATTAAAAAT
1 AATTTTAAAAT-TTCAAAAT
*
63610043 AATTTTAAAATTTCAAAAA
1 AATTTTAAAATTTCAAAAT
63610062 AATTTATAAAATTTTCAAAAT
1 AATTT-TAAAA-TTTCAAAAT
63610083 TTATATTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
19 17 0.50
20 9 0.26
21 8 0.24
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (19 bp):
AATTTTAAAATTTCAAAAT
Found at i:63610060 original size:20 final size:19
Alignment explanation
Indices: 63610021--63610081 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 19
63610011 AACTCACAAC
63610021 AAAAATTTT-AAATATT-AA
1 AAAAATTTTAAAAT-TTCAA
63610039 AAATAATTTTAAAATTTCAA
1 AAA-AATTTTAAAATTTCAA
63610059 AAAAATTTATAAAATTTTCAA
1 AAAAATTT-TAAAA-TTTCAA
63610080 AA
1 AA
63610082 TTTATATTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
18 3 0.08
19 13 0.34
20 14 0.37
21 8 0.21
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAAATTTTAAAATTTCAA
Found at i:63610652 original size:48 final size:48
Alignment explanation
Indices: 63610596--63610693 Score: 178
Period size: 48 Copynumber: 2.0 Consensus size: 48
63610586 TTTGAATCCA
63610596 TTTCCATTATCTACCATTAACTAGATAATAAAAGGATGTAATAATTTT
1 TTTCCATTATCTACCATTAACTAGATAATAAAAGGATGTAATAATTTT
* *
63610644 TTTCCATTATCTACCATTAACTAGATAATAAACGGATGTAGTAATTTT
1 TTTCCATTATCTACCATTAACTAGATAATAAAAGGATGTAATAATTTT
63610692 TT
1 TT
63610694 AATTAGTGTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.41
Consensus pattern (48 bp):
TTTCCATTATCTACCATTAACTAGATAATAAAAGGATGTAATAATTTT
Found at i:63612026 original size:11 final size:11
Alignment explanation
Indices: 63612012--63612087 Score: 52
Period size: 11 Copynumber: 6.8 Consensus size: 11
63612002 GATAATCAAT
63612012 TTAATATTAAA
1 TTAATATTAAA
63612023 TTAATA--AAA
1 TTAATATTAAA
*
63612032 -TATTATTAAGA
1 TTAATATTAA-A
*
63612043 TAAATATTAAA
1 TTAATATTAAA
63612054 TTAA-ATTTAATA
1 TTAATA-TTAA-A
63612066 TTAAACTATTAAA
1 TT-AA-TATTAAA
*
63612079 ATAATATTA
1 TTAATATTA
63612088 TCTTTGAAAT
Statistics
Matches: 51, Mismatches: 5, Indels: 18
0.69 0.07 0.24
Matches are distributed among these distances:
8 4 0.08
9 3 0.06
10 3 0.06
11 20 0.39
12 12 0.24
13 4 0.08
14 4 0.08
15 1 0.02
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (11 bp):
TTAATATTAAA
Found at i:63616744 original size:44 final size:44
Alignment explanation
Indices: 63616695--63616785 Score: 137
Period size: 44 Copynumber: 2.1 Consensus size: 44
63616685 GTAGGTCAAA
*
63616695 TAATATTAAAAGAACATACACTAATTAGAGTTTAAATGGGAAAC
1 TAATATTAAAAGAACATACACTAATCAGAGTTTAAATGGGAAAC
* * * *
63616739 TAATATTAAAATAACCTACACTAATCAGAGTTTAAGTGGTAAAC
1 TAATATTAAAAGAACATACACTAATCAGAGTTTAAATGGGAAAC
63616783 TAA
1 TAA
63616786 AAACAAAGTT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.48, C:0.11, G:0.12, T:0.29
Consensus pattern (44 bp):
TAATATTAAAAGAACATACACTAATCAGAGTTTAAATGGGAAAC
Found at i:63619342 original size:23 final size:23
Alignment explanation
Indices: 63619324--63619370 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
63619314 TTCTTTGATC
63619324 AGATCTTTCAAAAGACTTTTCCT
1 AGATCTTTCAAAAGACTTTTCCT
*
63619347 ATATCTTTCAAAAGACTTTTCCT
1 AGATCTTTCAAAAGACTTTTCCT
63619370 A
1 A
63619371 AGTTTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.40
Consensus pattern (23 bp):
AGATCTTTCAAAAGACTTTTCCT
Found at i:63619767 original size:29 final size:29
Alignment explanation
Indices: 63619713--63619772 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 29
63619703 AACAATAAAT
*
63619713 TAAAAATAAAAATATGTGTTTAAAAATAA
1 TAAAAATAAAAATATGAGTTTAAAAATAA
*
63619742 TAAATAATAAAACATAT-AGTTTAAAATTAA
1 TAAA-AATAAAA-ATATGAGTTTAAAAATAA
63619772 T
1 T
63619773 TAAGAATGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 4 0.15
30 19 0.70
31 4 0.15
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (29 bp):
TAAAAATAAAAATATGAGTTTAAAAATAA
Found at i:63620891 original size:20 final size:20
Alignment explanation
Indices: 63620855--63620895 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
63620845 ATTTTAAAAG
*
63620855 AATATATTTTTATATTTTTA
1 AATATATTTTAATATTTTTA
63620875 AATA-ATTTTAATGATTTTTA
1 AATATATTTTAAT-ATTTTTA
63620895 A
1 A
63620896 TTTTAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (20 bp):
AATATATTTTAATATTTTTA
Found at i:63630270 original size:3 final size:3
Alignment explanation
Indices: 63630234--63630900 Score: 193
Period size: 3 Copynumber: 224.0 Consensus size: 3
63630224 TTTAAAAATG
* * * * *
63630234 ATA ATA GTA ATA AAA ATA AAA ATA ATA GTG ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
63630282 ATAA ATA GTA ATA ATA ATA CATTA ACT- ATA ATA AT- ATG TTA ATA ACA
1 AT-A ATA ATA ATA ATA ATA -A-TA A-TA ATA ATA ATA ATA ATA ATA ATA
* * * * ** *
63630329 ATA A-A TTA ATG AT- TTA ATA A-C ATA GCA GTA AGTAA ATA A-A CATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-T-A ATA ATA -ATA
* * * * *
63630373 AAA ATA A-A ATA ATT ATA ATA GTA ATA TTA ACA A-A ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
63630419 ATA ATA ATA A-A ATG ATA ACA ATG ATA TTA ATA A-A ATA ATA GAAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
* * *
63630463 ATA ATA ATA CATTA ATA ATA ATA TATG TTA ATA ACA ATA ATA ATA TATA
1 ATA ATA ATA -A-TA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA -ATA
* * * * * * * *
63630512 A-A ATA ATA AT- ATG GTA A-A AAA ATA ATA AGA AT- GTA TTA ACA AGA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
63630556 ATG ATA ATA ATA A-A ATA A-G ATT ATA ATA ATA GTA TTA ATA AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *** *
63630602 GA-C ATA A-A A-A GATA GTA ATA ATA GTA ACA ATA AGA GCG TTA ATA
1 -ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
63630646 ATA ATA ATA ATA ATA ATA TTGA GATA CA-A A-A AGTA A-A TATA ATA
1 ATA ATA ATA ATA ATA ATA AT-A -ATA -ATA ATA A-TA ATA -ATA ATA
* * *
63630690 A-A ATA TTA A-A ATA A-A GTA ATAA AGA ATA A-A ACT- ATA TATA A-A
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA A-TA ATA -ATA ATA
* *
63630732 TATA TATA CAT- ATA CGTA TATA ATA AAA AGT- ATA CACTA ATA TATA
1 -ATA -ATA -ATA ATA -ATA -ATA ATA ATA A-TA ATA -A-TA ATA -ATA
63630778 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
63630826 ATA ATA GTA GTA GTA ATA ATA A-A ATA CAAA AGA A-A AT- ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA
* * *
63630869 AAA ATA TTA A-A ATA A-A GTA ATA A-A A-A ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
63630901 CTATATACAA
Statistics
Matches: 486, Mismatches: 117, Indels: 122
0.67 0.16 0.17
Matches are distributed among these distances:
2 58 0.12
3 370 0.76
4 49 0.10
5 9 0.02
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:63631568 original size:11 final size:11
Alignment explanation
Indices: 63631552--63631582 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
63631542 TCTAAAAAGG
63631552 TATTATTTTTT
1 TATTATTTTTT
63631563 TATTATTTTTT
1 TATTATTTTTT
63631574 TA-TATTTTT
1 TATTATTTTT
63631583 AAAATGTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.35
11 13 0.65
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (11 bp):
TATTATTTTTT
Found at i:63632961 original size:75 final size:76
Alignment explanation
Indices: 63632727--63633082 Score: 504
Period size: 75 Copynumber: 4.7 Consensus size: 76
63632717 AGAGACTAAA
* * *
63632727 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAAAAACATAAATTGAAAATATCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAAACAGAAATTGAAAATACCTC
* * **
63632792 AGTGCGTGACTTG
64 AGCGTGTGACCCG
*
63632805 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTGAAAAACATG-AATT-AAAGATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACA-GAAATTGAAA-ATACCTC
63632868 AGCGTGTGACCCG
64 AGCGTGTGACCCG
*
63632881 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAAATACCTCGG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAG
*
63632945 CGTGTGACCTG
66 CGTGTGACCCG
* **
63632956 AGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAAATACCTTGG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAG
63633020 CGTGTGACCCG
66 CGTGTGACCCG
* *
63633031 AGGCTCAACTCACATCTCGCAATATGAGTTAATTTTTTTGAAAAACAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAAT
63633083 AAAAATATCA
Statistics
Matches: 255, Mismatches: 17, Indels: 13
0.89 0.06 0.05
Matches are distributed among these distances:
74 1 0.00
75 139 0.55
76 60 0.24
77 25 0.10
78 30 0.12
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (76 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAG
CGTGTGACCCG
Found at i:63634744 original size:30 final size:30
Alignment explanation
Indices: 63634710--63634806 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
63634700 AGCTCACTCC
63634710 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
63634740 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
63634770 CAGCTCAACTTTAGCTCACGAGCTAAAACT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
63634800 TAGCTCA
1 TAGCTCA
63634807 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:63637521 original size:37 final size:37
Alignment explanation
Indices: 63637470--63637540 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
63637460 CATTCTTGTA
63637470 AAGAGAAAACAAAGAAAA-GAAAAGAAAAAGAAAAAGC
1 AAGAGAAAACAAAGAAAATG-AAAGAAAAAGAAAAAGC
*
63637507 AAGAGAAGAA-AAAGAAAATGAAATAAAAAGAAAA
1 AAGAGAA-AACAAAGAAAATGAAAGAAAAAGAAAA
63637541 GAGAGGCAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
37 28 0.90
38 3 0.10
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (37 bp):
AAGAGAAAACAAAGAAAATGAAAGAAAAAGAAAAAGC
Found at i:63637540 original size:6 final size:6
Alignment explanation
Indices: 63637480--63637529 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
63637470 AAGAGAAAAC
*
63637480 AAAG-A AAAG-A AAAGAA AAAGAA AAAGCAA GAGAAGAA AAAGAA AATGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAG-AA -A-AAGAA AAAGAA AAAGAA
63637529 A
1 A
63637530 TAAAAAGAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
5 9 0.22
6 22 0.55
7 3 0.08
8 3 0.08
9 3 0.08
ACGTcount: A:0.76, C:0.02, G:0.20, T:0.02
Consensus pattern (6 bp):
AAAGAA
Found at i:63637634 original size:11 final size:12
Alignment explanation
Indices: 63637590--63637632 Score: 86
Period size: 12 Copynumber: 3.6 Consensus size: 12
63637580 TTGAGAGAAA
63637590 TTGAAAAAGCCT
1 TTGAAAAAGCCT
63637602 TTGAAAAAGCCT
1 TTGAAAAAGCCT
63637614 TTGAAAAAGCCT
1 TTGAAAAAGCCT
63637626 TTGAAAA
1 TTGAAAA
63637633 GCAAAAAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.44, C:0.14, G:0.16, T:0.26
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:63639841 original size:30 final size:30
Alignment explanation
Indices: 63639807--63639903 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
63639797 AGCTCACTCC
63639807 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
63639837 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
63639867 CAGCTCAACTTTAGCTCACGAGCTAAAACT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
63639897 TAGCTCA
1 TAGCTCA
63639904 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:63651113 original size:14 final size:15
Alignment explanation
Indices: 63651094--63651129 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
63651084 CGTTTTATTT
63651094 AAAAACT-AAACTAA
1 AAAAACTAAAACTAA
*
63651108 AAAAACTAAAACTAT
1 AAAAACTAAAACTAA
63651123 AAAAACT
1 AAAAACT
63651130 TAGATCTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.69, C:0.14, G:0.00, T:0.17
Consensus pattern (15 bp):
AAAAACTAAAACTAA
Found at i:63652201 original size:20 final size:23
Alignment explanation
Indices: 63652178--63652220 Score: 65
Period size: 20 Copynumber: 2.0 Consensus size: 23
63652168 AAAATAATAC
63652178 TATATATA-A-ATAT-ATAAAAA
1 TATATATACACATATAATAAAAA
63652198 TATATATACACATATAATAAAAA
1 TATATATACACATATAATAAAAA
63652221 CATACACTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 8 0.40
21 1 0.05
22 4 0.20
23 7 0.35
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.33
Consensus pattern (23 bp):
TATATATACACATATAATAAAAA
Found at i:63654983 original size:43 final size:44
Alignment explanation
Indices: 63654935--63655050 Score: 110
Period size: 43 Copynumber: 2.7 Consensus size: 44
63654925 TAATTGGTCA
* *
63654935 CTTCAACCTGTTCCACTACTGCTTAGGGACACAAGGTTT-GTGT
1 CTTCAACCTGTTCCACTACTGCTTAGGGAAACAAGGTTTGGTAT
* * * ** *
63654978 CTTCAACTTGTT-CTCTGCAACTTCAGAGAAACAAGGTTTGGTAT
1 CTTCAACCTGTTCCACTACTGCTT-AGGGAAACAAGGTTTGGTAT
* * *
63655022 CTTCGATCTGCTCCACTACTGCTTAGGGA
1 CTTCAACCTGTTCCACTACTGCTTAGGGA
63655051 GATAAGATCT
Statistics
Matches: 53, Mismatches: 17, Indels: 5
0.71 0.23 0.07
Matches are distributed among these distances:
42 7 0.13
43 24 0.45
44 15 0.28
45 7 0.13
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (44 bp):
CTTCAACCTGTTCCACTACTGCTTAGGGAAACAAGGTTTGGTAT
Found at i:63655114 original size:44 final size:44
Alignment explanation
Indices: 63655030--63655194 Score: 129
Period size: 44 Copynumber: 3.7 Consensus size: 44
63655020 ATCTTCGATC
* * * *
63655030 TGCTCCACTACTGCTTAGGGAGATAAGA-TCTGTTATCTTCAATA
1 TGCTCCACTACAGCTTAGAGAGATAAGACT-TGCTAACTTCAATA
* *
63655074 TGCTCCGCTACAGCTTCAGAGAGATAAGACTTG-TAACTTCAACA
1 TGCTCCACTACAGCTT-AGAGAGATAAGACTTGCTAACTTCAATA
* * * ** * * *
63655118 TGCT-CTCTGCAACTTTAGAGAGATAAGGTTTGCTATCTTTAATC
1 TGCTCCACTACAGC-TTAGAGAGATAAGACTTGCTAACTTCAATA
* *
63655162 TGCTCCACTACTGCTTAGGGAGATAAGATCTTG
1 TGCTCCACTACAGCTTAGAGAGATAAGA-CTTG
63655195 TAATCCTCCA
Statistics
Matches: 94, Mismatches: 21, Indels: 11
0.75 0.17 0.09
Matches are distributed among these distances:
43 20 0.21
44 52 0.55
45 21 0.22
46 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.32
Consensus pattern (44 bp):
TGCTCCACTACAGCTTAGAGAGATAAGACTTGCTAACTTCAATA
Found at i:63655362 original size:88 final size:92
Alignment explanation
Indices: 63655163--63655555 Score: 248
Period size: 88 Copynumber: 4.4 Consensus size: 92
63655153 TCTTTAATCT
* * *
63655163 GCTCCACTACTGCTTAGGGAGATAAGATCTTGTAATCCTCCAGCCTTTTACCCTACTGCTTAGGG
1 GCTCCACTACTGCTTAGGGAGATAAGATC-TGTAATCCTCCAGCCTTCTACCCTACTGCTCAGAG
* *
63655228 AGTTAAAGCCTGCTCATCATCTTCGATCT
65 AGATAAAGCCTGCTCAT-ATCTTCGATCC
* * *
63655257 GCTCCATTGCTGCTTAGGGAGATAAGATCTGTAAT-CTTCAG-CTTGCT-CCACTACTGCTCAGA
1 GCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCCTCCAGCCTT-CTACC-CTACTGCTCAGA
*
63655319 GAGATAAAGCTTGC-CAT-T-TTCGATCC
64 GAGATAAAGCCTGCTCATATCTTCGATCC
* * * * * ** * *
63655345 GCTCCACTATTGCTTAGGGAAATAGGATCTGT-AT-TTTCAGTCAGT-TACCCTATTGCTTAG-G
1 GCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCCTCCAG-CCTTCTACCCTACTGCTCAGAG
* * * * * * *
63655406 -GGTTAAGACT-CAC-CATCTTTGATCT
65 AGATAAAGCCTGCTCATATCTTCGATCC
* * * ** *
63655431 GCACCACTATTGCTTAGGGAGATAAAGATCTGTCATTTTCTC-GCCTAT-TACCCTACTGCTTAG
1 GCTCCACTACTGCTTAGGGAGAT-AAGATCTGTAATCCTC-CAGCCT-TCTACCCTACTGCTCAG
* * * * *
63655494 -GGGGTTAAG---GCTCATCGTCTTCGATCT
63 AGAGATAAAGCCTGCTCAT-ATCTTCGATCC
63655521 GCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT
1 GCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT
63655556 TTTTGATCCA
Statistics
Matches: 242, Mismatches: 40, Indels: 39
0.75 0.12 0.12
Matches are distributed among these distances:
84 1 0.00
85 8 0.03
86 28 0.12
87 25 0.10
88 41 0.17
89 32 0.13
90 38 0.16
91 8 0.03
92 28 0.12
93 6 0.02
94 27 0.11
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (92 bp):
GCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCCTCCAGCCTTCTACCCTACTGCTCAGAGA
GATAAAGCCTGCTCATATCTTCGATCC
Found at i:63655638 original size:44 final size:45
Alignment explanation
Indices: 63655516--63655727 Score: 159
Period size: 44 Copynumber: 4.8 Consensus size: 45
63655506 CATCGTCTTC
* * * * *
63655516 GATCTGCTCCACTACTGCTTAG-GGAGATAAGATCTG-TAATTTTT
1 GATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTGCGAA-ATTT
** ** * *
63655560 GATCCACTCCACTATTGCTTAAG-G-AGATAGGATCTGTCGAAATTT
1 GATCTGCTCCACTCCTGC-TCAGCGAAGATAAGATCTG-CGAAATTT
* * * * *
63655605 AATCTGTTCCACTCCTGC-CAGCG-GGATGAGATCTGCTAAAATTT
1 GATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTGC-GAAATTT
*
63655649 GATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTACCGAAATTT
1 GATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCT-GCGAAATTT
* *
63655695 GATCTGCTCCGCTCCT-CTCAGCGAAGATCAGAT
1 GATCTGCTCCACTCCTGCTCAGCGAAGATAAGAT
63655728 TTGTAGTTTT
Statistics
Matches: 134, Mismatches: 26, Indels: 15
0.77 0.15 0.09
Matches are distributed among these distances:
43 3 0.02
44 58 0.43
45 40 0.30
46 32 0.24
47 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (45 bp):
GATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTGCGAAATTT
Found at i:63655698 original size:46 final size:46
Alignment explanation
Indices: 63655597--63655727 Score: 160
Period size: 46 Copynumber: 2.9 Consensus size: 46
63655587 TAGGATCTGT
* * * * *
63655597 CGAAATTTAATCTGTTCCACTCCTGC-CAGCG-GGATGAGATCTGC
1 CGAAATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTAC
**
63655641 TAAAATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTAC
1 CGAAATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTAC
* *
63655687 CGAAATTTGATCTGCTCCGCTCCT-CTCAGCGAAGATCAGAT
1 CGAAATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGAT
63655728 TTGTAGTTTT
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
44 22 0.30
45 21 0.28
46 31 0.42
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (46 bp):
CGAAATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTAC
Found at i:63676290 original size:210 final size:210
Alignment explanation
Indices: 63675748--63676929 Score: 1544
Period size: 210 Copynumber: 5.7 Consensus size: 210
63675738 CTTCATCGGG
* * * *
63675748 GCAGATCTAAGATGACAGATCTTATCTCTCTGTATTCGGCGGGGAGCATATCGAAGATATAGTTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTG
*
63675813 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGAATTGTCAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
** * * *
63675878 GAATGAATCAAAGTTTGGCATCTT-CACTTTGATGG-AGAGCAGACACATAGCAGATCTGACCTT
131 GAACAAATCGAAGTCTGGCAT-TTCCACTTTGATGGAAG-GCAGACACATAGCAGATCTTACCTT
63675941 CAGATGTTTATGCTGAA
194 CAGATGTTTATGCTGAA
* * ** * * * *
63675958 GCGGATCCAAGATG---G-T-TTGGCATC-CT-TGTGTT-TACAAGGAACAAATCGAAGACATAG
1 GCAGATCCAAGATGACAGATCTT---ATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAG
* *
63676015 CTGATTTGGCTTTCACGTGTTTACGTTGAAACAAATCTAAGATGATTTGTCGTCTCTGTATTGTC
63 CTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTC
*
63676080 AGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAAACACATAGCAGATCTTACCT
128 AGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCT
*
63676145 TCAGATGTTTACGCTGAA
193 TCAGATGTTTATGCTGAA
*
63676163 GCAGATCCAAGATGACAGATCTTATCTC-CATGTATTCGGTAGGGAGCAGATCGAAGATATAGCT
1 GCAGATCCAAGATGACAGATCTTATCTCTC-TGTATTCGGCAGGGAGCAGATCGAAGATATAGCT
* * * *
63676227 GATTTGGCTTTCATGTGTTTACGATGAAGCAAATCTAAGATGATTTATCATCTTTGTATTGTCAG
65 GATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAG
63676292 AGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTC
130 AGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTC
63676357 AGATGTTTATGCTGAA
195 AGATGTTTATGCTGAA
*
63676373 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCAGCAGGGAGCAGATCGAAGATATAGCTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTG
* **
63676438 ATTTGGCTTTCATGTGTTTTTGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
* *
63676503 GAAAAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCCTCA
131 GAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCA
*
63676568 GATGTTTACGCTGAA
196 GATGTTTATGCTGAA
*
63676583 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAACAGATCGAAGATATAGCTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTG
* *
63676648 ATTTGGCTTTCACGTGTTTTCGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTATCAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
** * * * **
63676713 GAATGAATCAAAGTTTGGCATCTT-CACTTTGATGG-AGAGCAGACACATAACAGATCTCGCCTT
131 GAACAAATCGAAGTCTGGCAT-TTCCACTTTGATGGAAG-GCAGACACATAGCAGATCTTACCTT
* *
63676776 CGGATGTTTATGCTAAA
194 CAGATGTTTATGCTGAA
* ** * ** * * *
63676793 GCGGATCCAAGATG---G-T-TTGGCATC-CT-TATGCTTACAAGGAGAAAATCG-A-ATCATAG
1 GCAGATCCAAGATGACAGATCTTATC-TCTCTGTATTC-GGCAGGGAGCAGATCGAAGAT-ATAG
* * * * * * *
63676849 TTGATTTGGCTTTCACGTGCTTAAGTTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTC
63 CTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTC
*
63676914 AGGGAACAAATCGAAG
128 AGAGAACAAATCGAAG
63676930 AAGCAGATTT
Statistics
Matches: 865, Mismatches: 87, Indels: 46
0.87 0.09 0.05
Matches are distributed among these distances:
203 2 0.00
204 79 0.09
205 179 0.21
206 11 0.01
207 7 0.01
208 5 0.01
209 8 0.01
210 571 0.66
211 3 0.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (210 bp):
GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTG
ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
GAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCA
GATGTTTATGCTGAA
Found at i:63676605 original size:420 final size:413
Alignment explanation
Indices: 63675748--63676929 Score: 1705
Period size: 420 Copynumber: 2.8 Consensus size: 413
63675738 CTTCATCGGG
* * * *
63675748 GCAGATCTAAGATGACAGATCTTATCTCTCTGTATTCGGCGGGGAGCATATCGAAGATATAGTTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTG
*
63675813 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGAATTGTCAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
*
63675878 GAATGAATCAAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAGCAGATCTGACCTTCA
131 GAATGAATCAAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAGCAGATCTCACCTTCA
* *
63675943 GATGTTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA
196 GATGTTTATGCTGAAGCGGATCCAAGATGGTTT-G-ATCCTTGTATTCACAAGGAACAAATCGAA
*
63676008 GACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAACAAATCTAAGATGATTTGTCGTCTCTG
259 GACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGATTTGTCGTCTCTG
*
63676073 TATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAAACACATAGCAGAT
324 TATTGTCAGAGAAAAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAAACACATAGCAGAT
*
63676138 CTTACCTTCAGATGTTTACGCTGAA
389 CTTACCCTCAGATGTTTACGCTGAA
*
63676163 GCAGATCCAAGATGACAGATCTTATCTC-CATGTATTCGGTAGGGAGCAGATCGAAGATATAGCT
1 GCAGATCCAAGATGACAGATCTTATCTCTC-TGTATTCGGCAGGGAGCAGATCGAAGATATAGCT
* * * *
63676227 GATTTGGCTTTCATGTGTTTACGATGAAGCAAATCTAAGATGATTTATCATCTTTGTATTGTCAG
65 GATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAG
** * * *
63676292 AGAACAAATCGAAGTCTGGCAT-TTCCACTTTGATGGA-AGGCAGACACATAGCAGATCTTACCT
130 AGAATGAATCAAAGTTTGGCATCTT-CACTTTGATGGAGA-GCAGACACATAGCAGATCTCACCT
* * *
63676355 TCAGATGTTTATGCTGAAGCAGATCCAAGATGACAGATCTT-ATCTCTCTGTATTCAGCAGGGAG
193 TCAGATGTTTATGCTGAAGCGGATCCAAGATG---G-T-TTGATC-CT-TGTATTCA-CAAGGAA
* * * ** *
63676419 CAGATCGAAGATATAGCTGATTTGGCTTTCATGTGTTTTTGATGAAGCAAATCTAAGATGATTTG
250 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGATTTG
*
63676484 TCGTCTCTGTATTGTCAGAGAAAAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACAC
315 TCGTCTCTGTATTGTCAGAGAAAAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAAACAC
63676549 ATAGCAGATCTTACCCTCAGATGTTTACGCTGAA
380 ATAGCAGATCTTACCCTCAGATGTTTACGCTGAA
*
63676583 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAACAGATCGAAGATATAGCTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTG
* *
63676648 ATTTGGCTTTCACGTGTTTTCGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTATCAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
* * *
63676713 GAATGAATCAAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAACAGATCTCGCCTTCG
131 GAATGAATCAAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAGCAGATCTCACCTTCA
* * *
63676778 GATGTTTATGCTAAAGCGGATCCAAGATGGTTTGGCATCCTTATGCTT-ACAAGGAGA-AAATCG
196 GATGTTTATGCTGAAGCGGATCCAAGATGGTTT-G-ATCCTTGT-ATTCACAAGGA-ACAAATCG
* * * * * * *
63676841 AA-TCATAGTTGATTTGGCTTTCACGTGCTTAAG-TTAAAGCAAATCTAAGATGATTTGGCATCT
257 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAA-CAAATCTAAGATGATTTGTCGTCT
* *
63676904 CTGTATTGTCAGGGAACAAATCGAAG
321 CTGTATTGTCAGAGAAAAAATCGAAG
63676930 AAGCAGATTT
Statistics
Matches: 681, Mismatches: 66, Indels: 41
0.86 0.08 0.05
Matches are distributed among these distances:
413 3 0.00
414 74 0.11
415 215 0.32
416 4 0.01
417 8 0.01
418 6 0.01
419 7 0.01
420 360 0.53
421 4 0.01
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (413 bp):
GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTG
ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
GAATGAATCAAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAGCAGATCTCACCTTCA
GATGTTTATGCTGAAGCGGATCCAAGATGGTTTGATCCTTGTATTCACAAGGAACAAATCGAAGA
CATAGCTGATTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGATTTGTCGTCTCTGTA
TTGTCAGAGAAAAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAAACACATAGCAGATCT
TACCCTCAGATGTTTACGCTGAA
Found at i:63678377 original size:39 final size:38
Alignment explanation
Indices: 63678333--63678481 Score: 174
Period size: 39 Copynumber: 3.9 Consensus size: 38
63678323 ATAAAGTATG
*
63678333 GTTTTAATTAATAATAAAACAAAATAGTATGAGGAAGTA
1 GTTTTAATTAACAATAAAACAAAATAGTATG-GGAAGTA
* *
63678372 GTTTTAATTAACAATAAAACAAAATTGTATGGGAAAATA
1 GTTTTAATTAACAATAAAACAAAATAGTATGGG-AAGTA
* *
63678411 GTTTTAATTAACAATAAAACAAAATAGCATGGGGAGT-
1 GTTTTAATTAACAATAAAACAAAATAGTATGGGAAGTA
* * * * *
63678448 GTTTTTGATTAATAATAAAATAAAGTAGCATGGG
1 G-TTTTAATTAACAATAAAACAAAATAGTATGGG
63678482 GGAGTGGAAT
Statistics
Matches: 97, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
37 1 0.01
38 32 0.33
39 64 0.66
ACGTcount: A:0.48, C:0.05, G:0.17, T:0.31
Consensus pattern (38 bp):
GTTTTAATTAACAATAAAACAAAATAGTATGGGAAGTA
Found at i:63679012 original size:13 final size:13
Alignment explanation
Indices: 63678996--63679054 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
63678986 TACCATGTAA
63678996 ATATTTTAATATT
1 ATATTTTAATATT
*
63679009 ATATTAT-ATA-T
1 ATATTTTAATATT
*
63679020 ACATTTTATATATAT
1 ATATTTTA-ATAT-T
*
63679035 ATCTTTTAATATT
1 ATATTTTAATATT
*
63679048 GTATTTT
1 ATATTTT
63679055 TATTGTTTTG
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
11 6 0.17
12 3 0.09
13 15 0.43
14 4 0.11
15 7 0.20
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (13 bp):
ATATTTTAATATT
Found at i:63679295 original size:20 final size:23
Alignment explanation
Indices: 63679247--63679299 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 23
63679237 ATTTACCTTC
*
63679247 AATATTATATATCGTATATTTCT
1 AATATTATATATCGTATATTACT
63679270 AATATTAT-TA-CGT-TATTACT
1 AATATTATATATCGTATATTACT
*
63679290 ACTATTATAT
1 AATATTATAT
63679300 TATTATTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 13 0.48
21 4 0.15
22 2 0.07
23 8 0.30
ACGTcount: A:0.36, C:0.09, G:0.04, T:0.51
Consensus pattern (23 bp):
AATATTATATATCGTATATTACT
Found at i:63680156 original size:21 final size:19
Alignment explanation
Indices: 63680118--63680156 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
63680108 ACTCCCGTTT
*
63680118 TCATTTTTAAAATCGATTC
1 TCATTTTCAAAATCGATTC
63680137 TCATTTTCCAAAACTCGATT
1 TCATTTT-CAAAA-TCGATT
63680157 TGAAAATGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 4 0.24
21 6 0.35
ACGTcount: A:0.31, C:0.21, G:0.05, T:0.44
Consensus pattern (19 bp):
TCATTTTCAAAATCGATTC
Found at i:63682903 original size:49 final size:49
Alignment explanation
Indices: 63682831--63682974 Score: 200
Period size: 51 Copynumber: 2.9 Consensus size: 49
63682821 GCCGAAGCTA
* *
63682831 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG-
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC-ACAGT
* * *
63682880 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTT
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCACAG--T
*
63682931 TCGGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC
63682975 TCACAATAGA
Statistics
Matches: 83, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
48 4 0.05
49 39 0.47
51 40 0.48
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (49 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCACAGT
Found at i:63685841 original size:42 final size:42
Alignment explanation
Indices: 63685722--63685841 Score: 150
Period size: 43 Copynumber: 2.8 Consensus size: 42
63685712 TACACAGTAG
* *
63685722 CATACCAATGCCATATCCCAAATATGGTCTTACATGAAATCT
1 CATATCAATGCCATATCCCAAATATGGTCTTACACGAAATCT
* ** *
63685764 CATATCAATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCT
1 CATATCAATGCC-ATATCCCAAATATGGTCTTACACGAAATCT
* * *
63685807 CGTATCGATGCCATATCCCATATATGGTCTTACAC
1 CATATCAATGCCATATCCCAAATATGGTCTTACAC
63685842 ATAATCGTAG
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
42 31 0.47
43 35 0.53
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAAATATGGTCTTACACGAAATCT
Found at i:63709758 original size:28 final size:28
Alignment explanation
Indices: 63709698--63709750 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
63709688 AAAATAATTA
**
63709698 AAATTAAATATTTTAATAATTTGAGTTC
1 AAATTAAATATTTTAATAATTAAAGTTC
63709726 AAATTAAATATTTT-ATAATTAAAGT
1 AAATTAAATATTTTAATAATTAAAGT
63709751 ATGAAATTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (28 bp):
AAATTAAATATTTTAATAATTAAAGTTC
Found at i:63711950 original size:15 final size:16
Alignment explanation
Indices: 63711923--63711952 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
63711913 AATAAAAATT
63711923 AATATATATTATATAA
1 AATATATATTATATAA
63711939 AATATA-ATTATATA
1 AATATATATTATATA
63711953 TTAGTTGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
AATATATATTATATAA
Found at i:63712403 original size:14 final size:15
Alignment explanation
Indices: 63712377--63712406 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
63712367 ATGAGCGAGG
63712377 TTTTATCCCCCTCAA
1 TTTTATCCCCCTCAA
63712392 TTTTAT-CCCCTCAA
1 TTTTATCCCCCTCAA
63712406 T
1 T
63712407 AATGTTTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.20, C:0.37, G:0.00, T:0.43
Consensus pattern (15 bp):
TTTTATCCCCCTCAA
Found at i:63719798 original size:49 final size:49
Alignment explanation
Indices: 63719672--63719893 Score: 243
Period size: 46 Copynumber: 4.5 Consensus size: 49
63719662 CTGGTACGCA
* * * *
63719672 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATTCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
63719721 TAGTA---TGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
** * *
63719767 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * ** * *
63719817 TAGTAGCCTGCACCTAGTACTACACACGTGATCACAGTTTTAGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACACG
* *
63719868 TAGTAGCCTGCACTAAGCACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
63719894 TGCGATCTCA
Statistics
Matches: 146, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
46 42 0.29
49 30 0.21
50 42 0.29
51 31 0.21
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:63719836 original size:50 final size:49
Alignment explanation
Indices: 63719659--63719893 Score: 244
Period size: 50 Copynumber: 4.8 Consensus size: 49
63719649 TAGCCAAAGC
* * * * *
63719659 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
63719708 TAT-TCGGTACACGTAGTA---TGCACTTAGTACTACACACGTGACCAAT
1 TATCT-GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
63719754 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * *
63719804 CATCTGATACACGTAGTAGCCTGCACCTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* ** * * * *
63719855 TTTAGGGTACGCATAGTAGCCTGCACTAAGCACTACACA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
63719894 TGCGATCTCA
Statistics
Matches: 155, Mismatches: 23, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
46 41 0.26
48 1 0.01
49 39 0.25
50 42 0.27
51 31 0.20
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:63722575 original size:47 final size:47
Alignment explanation
Indices: 63722506--63723030 Score: 816
Period size: 47 Copynumber: 11.1 Consensus size: 47
63722496 GAAATGATAG
*
63722506 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
63722553 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
63722600 TAGGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
63722647 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
63722694 TAGGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
63722741 TAGGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
63722788 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
63722837 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
63722886 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
63722933 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
63722980 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
63723027 TAAG
1 TAAG
63723031 TCCCGAAGGG
Statistics
Matches: 453, Mismatches: 23, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 359 0.79
49 94 0.21
ACGTcount: A:0.31, C:0.10, G:0.32, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:63723206 original size:38 final size:37
Alignment explanation
Indices: 63723149--63723227 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 37
63723139 CTGAGCTCTA
* *
63723149 AAGACCCGATGACTACGTGTGG-GAATTTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-A-TTATGTCCGGGT
*
63723187 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
63723224 AAGA
1 AAGA
63723228 TTTCGTAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 15 0.41
38 21 0.57
39 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:63742550 original size:21 final size:22
Alignment explanation
Indices: 63742532--63742609 Score: 86
Period size: 23 Copynumber: 3.5 Consensus size: 22
63742522 TAAAGTGCAT
63742532 AAAACGACACACGAGGTGCCT-
1 AAAACGACACACGAGGTGCCTA
***
63742553 GCTACGACACACGAGGTGCCTGA
1 AAAACGACACACGAGGTGCCT-A
* *
63742576 TATACGACACACGAGGTGCCTA
1 AAAACGACACACGAGGTGCCTA
63742598 AAATACGACACA
1 AAA-ACGACACA
63742610 TAAAGTGCCT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
21 18 0.38
22 2 0.04
23 27 0.57
ACGTcount: A:0.36, C:0.28, G:0.23, T:0.13
Consensus pattern (22 bp):
AAAACGACACACGAGGTGCCTA
Found at i:63742619 original size:23 final size:22
Alignment explanation
Indices: 63742512--63742609 Score: 101
Period size: 21 Copynumber: 4.5 Consensus size: 22
63742502 CCTGATCAGT
** * *
63742512 ATACGACACATAAAGTGCATAA
1 ATACGACACACGAGGTGCCTAA
*
63742534 A-ACGACACACGAGGTGCCT-G
1 ATACGACACACGAGGTGCCTAA
* *
63742554 CTACGACACACGAGGTGCCTGAT
1 ATACGACACACGAGGTGCCT-AA
63742577 ATACGACACACGAGGTGCCTAAA
1 ATACGACACACGAGGTGCCT-AA
63742600 ATACGACACA
1 ATACGACACA
63742610 TAAAGTGCCT
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
21 32 0.51
22 1 0.02
23 30 0.48
ACGTcount: A:0.38, C:0.27, G:0.21, T:0.14
Consensus pattern (22 bp):
ATACGACACACGAGGTGCCTAA
Found at i:63743017 original size:15 final size:15
Alignment explanation
Indices: 63742992--63743049 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
63742982 TCATATATAT
63742992 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
63743008 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
63743023 AATAATTTCAATCAA
1 TATAAATTCAATCAA
63743038 TATAAATTCAAT
1 TATAAATTCAAT
63743050 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:63748034 original size:21 final size:21
Alignment explanation
Indices: 63747996--63748114 Score: 130
Period size: 21 Copynumber: 5.5 Consensus size: 21
63747986 CCTGATCAGT
** *
63747996 ATACGACACATAAAGTGCCTA
1 ATACGACACACGAGGTGCCTA
* *
63748017 AAACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTA
* *
63748038 CTACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTA
*
63748059 CTACGACACACGAGGTGCCTGA
1 ATACGACACACGAGGTGCCT-A
63748081 TATACGACACACGAGGTGCCTAAA
1 -ATACGACACACGAGGTGCCT--A
63748105 ATACGACACA
1 ATACGACACA
63748115 TAAAGTGCCT
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
21 55 0.65
23 29 0.34
24 1 0.01
ACGTcount: A:0.34, C:0.29, G:0.23, T:0.14
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTA
Found at i:63748048 original size:23 final size:21
Alignment explanation
Indices: 63748019--63748101 Score: 139
Period size: 21 Copynumber: 3.9 Consensus size: 21
63748009 AGTGCCTAAA
63748019 ACGACACACGAGGTGCCTGCT
1 ACGACACACGAGGTGCCTGCT
63748040 ACGACACACGAGGTGCCTGCT
1 ACGACACACGAGGTGCCTGCT
*
63748061 ACGACACACGAGGTGCCTGATAT
1 ACGACACACGAGGTGCCTG--CT
63748084 ACGACACACGAGGTGCCT
1 ACGACACACGAGGTGCCT
63748102 AAAATACGAC
Statistics
Matches: 59, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
21 40 0.68
23 19 0.32
ACGTcount: A:0.27, C:0.31, G:0.28, T:0.14
Consensus pattern (21 bp):
ACGACACACGAGGTGCCTGCT
Found at i:63750587 original size:13 final size:13
Alignment explanation
Indices: 63750569--63750593 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63750559 ATAGATGAAG
63750569 GATTGGTAAAGGT
1 GATTGGTAAAGGT
63750582 GATTGGTAAAGG
1 GATTGGTAAAGG
63750594 ATTGGTACCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.40, T:0.28
Consensus pattern (13 bp):
GATTGGTAAAGGT
Found at i:63750596 original size:11 final size:11
Alignment explanation
Indices: 63750566--63750600 Score: 52
Period size: 11 Copynumber: 3.0 Consensus size: 11
63750556 ATGATAGATG
63750566 AAGGATTGGTA
1 AAGGATTGGTA
63750577 AAGGTGATTGGTA
1 AA-G-GATTGGTA
63750590 AAGGATTGGTA
1 AAGGATTGGTA
63750601 CCCATGATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 10 0.45
12 2 0.09
13 10 0.45
ACGTcount: A:0.34, C:0.00, G:0.37, T:0.29
Consensus pattern (11 bp):
AAGGATTGGTA
Found at i:63754684 original size:34 final size:35
Alignment explanation
Indices: 63754618--63754684 Score: 93
Period size: 34 Copynumber: 1.9 Consensus size: 35
63754608 CCTAGCTATA
*
63754618 GTCTCAGTCTTCTAAAGTTTTCAGTTTTCCCTACT
1 GTCTCAGTCTTCTAAAGTTTTCAGTTTACCCTACT
*
63754653 GTCTCAGT-TTCTATAGTTTT-AGTATTACCCTA
1 GTCTCAGTCTTCTAAAGTTTTCAGT-TTACCCTA
63754685 ACTATAGAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 3 0.10
34 18 0.62
35 8 0.28
ACGTcount: A:0.19, C:0.22, G:0.12, T:0.46
Consensus pattern (35 bp):
GTCTCAGTCTTCTAAAGTTTTCAGTTTACCCTACT
Found at i:63755802 original size:60 final size:60
Alignment explanation
Indices: 63755659--63755805 Score: 140
Period size: 60 Copynumber: 2.5 Consensus size: 60
63755649 ATTCAGAAAT
* * *
63755659 CAGAGTTA-ATTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTA
1 CAGAGTTATATTGGGCCTT-GCCCATATCAATATCAATATGGGCCATAGCCCATTACAGTA
* ** * * * *
63755719 CCAGAG-TATACTGTTCCTAGCCCATGTCAGTATCAATATGGGTCATAGCCCTATTACAAGT-
1 -CAGAGTTATATTGGGCCTTGCCCATATCAATATCAATATGGGCCATAGCCC-ATTAC-AGTA
63755780 C-GAGTTATATTGGGCCTTGCCCATAT
1 CAGAGTTATATTGGGCCTTGCCCATAT
63755806 TAACACAGTT
Statistics
Matches: 67, Mismatches: 15, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
59 3 0.04
60 46 0.69
61 15 0.22
62 3 0.04
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (60 bp):
CAGAGTTATATTGGGCCTTGCCCATATCAATATCAATATGGGCCATAGCCCATTACAGTA
Found at i:63764790 original size:40 final size:40
Alignment explanation
Indices: 63764698--63764888 Score: 251
Period size: 40 Copynumber: 4.8 Consensus size: 40
63764688 TGGATGATAA
* * * * * **
63764698 CCGGGCTAAGTCCCAAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
63764738 CTGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
63764777 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
63764817 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
63764857 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
63764889 AGCTATATCC
Statistics
Matches: 135, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 31 0.23
40 102 0.76
41 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:63768114 original size:12 final size:12
Alignment explanation
Indices: 63768097--63768121 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
63768087 TATGTATGTT
63768097 TGAAAATTTTTA
1 TGAAAATTTTTA
63768109 TGAAAATTTTTA
1 TGAAAATTTTTA
63768121 T
1 T
63768122 TATTTGCTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGAAAATTTTTA
Found at i:63770145 original size:25 final size:25
Alignment explanation
Indices: 63770116--63770163 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63770106 TTATAATATG
** *
63770116 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCATTTTACCCCTAGGTA
63770141 AAAATGACCATTTTACCCCTAGG
1 AAAATGACCATTTTACCCCTAGG
63770164 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGTA
Found at i:63770376 original size:24 final size:24
Alignment explanation
Indices: 63770293--63770388 Score: 104
Period size: 25 Copynumber: 3.9 Consensus size: 24
63770283 GGAGGAAGGG
63770293 CAAAAGGGCTATGCCCCAGTTTACT
1 CAAAAGGGCTATGCCCCAGTTTA-T
* *
63770318 GAAAAGGGCTTTGCCCCAGTTTAT
1 CAAAAGGGCTATGCCCCAGTTTAT
*
63770342 CAAAAAGGGCTTTGCCCCAG-TTAT
1 C-AAAAGGGCTATGCCCCAGTTTAT
* *
63770366 TAAAAGAGGCTAGGCCTCCAGTT
1 CAAAAG-GGCTATGCC-CCAGTT
63770389 ATATGATAAA
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
23 5 0.08
24 12 0.20
25 43 0.70
26 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
CAAAAGGGCTATGCCCCAGTTTAT
Found at i:63770387 original size:50 final size:50
Alignment explanation
Indices: 63770294--63770388 Score: 122
Period size: 50 Copynumber: 1.9 Consensus size: 50
63770284 GAGGAAGGGC
**
63770294 AAAAGGGCTATGCCCCAGTTTACTGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACTGAAAAGGGCTAGGCCCCAGTTTATCA
* *
63770344 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACTGAAAAG-GGCTAGGCC-CCAGTT
63770389 ATATGATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
48 6 0.15
49 10 0.26
50 23 0.59
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.25
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACTGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:63770620 original size:31 final size:31
Alignment explanation
Indices: 63770585--63770692 Score: 171
Period size: 31 Copynumber: 3.5 Consensus size: 31
63770575 CGTTTGCAGT
63770585 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
63770616 AAAGGCTTCGGCCCAGCGATATGAATGATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * *
63770647 AAAGGCTTCGGCCCAGTGACATGGATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
63770678 AAAGGCTTCGGCCCA
1 AAAGGCTTCGGCCCA
63770693 ATATATGCTG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 70 1.00
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.20
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:63779711 original size:92 final size:92
Alignment explanation
Indices: 63779595--63779839 Score: 337
Period size: 92 Copynumber: 2.7 Consensus size: 92
63779585 TCAGATAGTA
* * ** * *
63779595 GTACGTAGAGTAGCTAACATACATGTGGTATGGTGCAATGTGGTAATCCGCTATACCGATAGGTT
1 GTACGTAGTGTAGCTAACATACATGCGGTACAGTGCAATGCGGTAATCCGCTATACCAATAGGTT
* *
63779660 GTAGTAAAACTGCCAGTTCAGTCAAAT
66 GCAGTAAAACTGCCAGTTCAGTCAAAG
* **
63779687 GTACGCAGTGTAGCTAATGTACATGCGGTACAGTGCAATGCGGTAATCCGCTATACCAATAGGTT
1 GTACGTAGTGTAGCTAACATACATGCGGTACAGTGCAATGCGGTAATCCGCTATACCAATAGGTT
63779752 GCAGTAAAACTGCCAGTTCAGTCAAAG
66 GCAGTAAAACTGCCAGTTCAGTCAAAG
* * * ** *
63779779 GTACGTAGTGTAGCTGACATACATGCAGTACAGTGCAATACGACAATCCACTATACCAATA
1 GTACGTAGTGTAGCTAACATACATGCGGTACAGTGCAATGCGGTAATCCGCTATACCAATA
63779840 TGATGTCATC
Statistics
Matches: 133, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
92 133 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (92 bp):
GTACGTAGTGTAGCTAACATACATGCGGTACAGTGCAATGCGGTAATCCGCTATACCAATAGGTT
GCAGTAAAACTGCCAGTTCAGTCAAAG
Found at i:63780023 original size:4 final size:4
Alignment explanation
Indices: 63780014--63780049 Score: 72
Period size: 4 Copynumber: 9.0 Consensus size: 4
63780004 AGTTTATGCA
63780014 TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG
63780050 CAGTCAGAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:63780376 original size:20 final size:21
Alignment explanation
Indices: 63780339--63780385 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
63780329 AGGCACACGC
63780339 CTGTGTGAAGTAGGGGTATGG
1 CTGTGTGAAGTAGGGGTATGG
*
63780360 CTGTGTGAAG-CGGGGTATGG
1 CTGTGTGAAGTAGGGGTATGG
*
63780380 CCGTGT
1 CTGTGT
63780386 AAACAGGCCG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.15, C:0.11, G:0.47, T:0.28
Consensus pattern (21 bp):
CTGTGTGAAGTAGGGGTATGG
Found at i:63780566 original size:13 final size:13
Alignment explanation
Indices: 63780545--63780578 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
63780535 CAGCCACACA
63780545 GCCGTGTGGCCAG
1 GCCGTGTGGCCAG
*
63780558 GCTGTGTGGCCAG
1 GCCGTGTGGCCAG
63780571 GCCGTGTG
1 GCCGTGTG
63780579 ACTCCTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.06, C:0.26, G:0.47, T:0.21
Consensus pattern (13 bp):
GCCGTGTGGCCAG
Found at i:63783517 original size:86 final size:87
Alignment explanation
Indices: 63783366--63783525 Score: 209
Period size: 86 Copynumber: 1.9 Consensus size: 87
63783356 ACACCACACC
* * * *
63783366 AGTAGGCACCGAAGTGCAAATAAATGGGCACCATAGTCCAAAGCGATAGTCACTGAAATGCAAAT
1 AGTAGGCACCGAAGTGCAAATAAATAGGCACCATAGTCCAAAGCAATAGGCACTCAAATGCAAAT
63783431 CAGTAGGCACCTAAGGTAGAAT
66 CAGTAGGCACCTAAGGTAGAAT
* * * *
63783453 AGTAGGCATCGAAGTGCAAA-AAGTAGGCACTATTA-TGCAAAGCAATAGGCAC-CAAAGTGCAA
1 AGTAGGCACCGAAGTGCAAATAAATAGGCACCA-TAGTCCAAAGCAATAGGCACTCAAA-TGCAA
63783515 ATCAGTAGGCA
64 ATCAGTAGGCA
63783526 TTGTAGTGCA
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
85 3 0.05
86 39 0.62
87 21 0.33
ACGTcount: A:0.40, C:0.19, G:0.24, T:0.17
Consensus pattern (87 bp):
AGTAGGCACCGAAGTGCAAATAAATAGGCACCATAGTCCAAAGCAATAGGCACTCAAATGCAAAT
CAGTAGGCACCTAAGGTAGAAT
Found at i:63783537 original size:44 final size:44
Alignment explanation
Indices: 63783368--63783658 Score: 234
Period size: 44 Copynumber: 6.7 Consensus size: 44
63783358 ACCACACCAG
* * * * * *
63783368 TAGGCACCGAAGTGCAAATAAATGGGCACCATAGTCCAAAGCGA
1 TAGGCACCGAAGTGCAAATCAGTAGGCACCGTAGTGCAAAGCAA
* * * * * *
63783412 TAGTCACTGAAATGCAAATCAGTAGGCACC-TAAG-GTAGAA-TAG
1 TAGGCACCGAAGTGCAAATCAGTAGGCACCGT-AGTGCA-AAGCAA
* * **
63783455 TAGGCATCGAAGTGCAAA-AAGTAGGCACTATTA-TGCAAAGCAA
1 TAGGCACCGAAGTGCAAATCAGTAGGCAC-CGTAGTGCAAAGCAA
* **
63783498 TAGGCACCAAAGTGCAAATCAGTAGGCATTGTAGTGCAAAGCAA
1 TAGGCACCGAAGTGCAAATCAGTAGGCACCGTAGTGCAAAGCAA
* * **
63783542 TAGGCACCGAAGTGTAGAA-CAGTAGGCACCATAGTGCAAAATAA
1 TAGGCACCGAAGTGCA-AATCAGTAGGCACCGTAGTGCAAAGCAA
* * * * *
63783586 TAGGCATCGGAGTGCAAATTAGTAGGCACCGTAGTGTAAAGCAG
1 TAGGCACCGAAGTGCAAATCAGTAGGCACCGTAGTGCAAAGCAA
* *
63783630 TATGCACCAAAGTGCAAATCAGTAGGCAC
1 TAGGCACCGAAGTGCAAATCAGTAGGCAC
63783659 TGAACTACAG
Statistics
Matches: 190, Mismatches: 47, Indels: 20
0.74 0.18 0.08
Matches are distributed among these distances:
42 11 0.06
43 40 0.21
44 137 0.72
45 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.18
Consensus pattern (44 bp):
TAGGCACCGAAGTGCAAATCAGTAGGCACCGTAGTGCAAAGCAA
Found at i:63783555 original size:22 final size:22
Alignment explanation
Indices: 63783365--63783658 Score: 167
Period size: 22 Copynumber: 13.5 Consensus size: 22
63783355 TACACCACAC
63783365 CAGTAGGCACCGAAGTGCAAAT
1 CAGTAGGCACCGAAGTGCAAAT
* * * * *
63783387 AAATGGGCACC-ATAGTCCAAAG
1 CAGTAGGCACCGA-AGTGCAAAT
* * *
63783409 C-GATAGTCACTGAAATGCAAAT
1 CAG-TAGGCACCGAAGTGCAAAT
* *
63783431 CAGTAGGCACCTAAG-GTAGAAT
1 CAGTAGGCACCGAAGTGCA-AAT
*
63783453 -AGTAGGCATCGAAGTGCAAA-
1 CAGTAGGCACCGAAGTGCAAAT
* * *
63783473 AAGTAGGCA-CTATTA-TGCAAAG
1 CAGTAGGCACCGA--AGTGCAAAT
* *
63783495 CAATAGGCACCAAAGTGCAAAT
1 CAGTAGGCACCGAAGTGCAAAT
** * *
63783517 CAGTAGGCATTGTAGTGCAAAG
1 CAGTAGGCACCGAAGTGCAAAT
* *
63783539 CAATAGGCACCGAAGTGTAGAA-
1 CAGTAGGCACCGAAGTGCA-AAT
63783561 CAGTAGGCACC-ATAGTGCAAAAT
1 CAGTAGGCACCGA-AGTGC-AAAT
* * *
63783584 -AATAGGCATCGGAGTGCAAAT
1 CAGTAGGCACCGAAGTGCAAAT
* * * *
63783605 TAGTAGGCACCGTAGTGTAAAG
1 CAGTAGGCACCGAAGTGCAAAT
* *
63783627 CAGTATGCACCAAAGTGCAAAT
1 CAGTAGGCACCGAAGTGCAAAT
63783649 CAGTAGGCAC
1 CAGTAGGCAC
63783659 TGAACTACAG
Statistics
Matches: 200, Mismatches: 54, Indels: 36
0.69 0.19 0.12
Matches are distributed among these distances:
20 2 0.01
21 37 0.19
22 154 0.77
23 7 0.04
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.18
Consensus pattern (22 bp):
CAGTAGGCACCGAAGTGCAAAT
Found at i:63783578 original size:66 final size:66
Alignment explanation
Indices: 63783365--63783657 Score: 215
Period size: 66 Copynumber: 4.5 Consensus size: 66
63783355 TACACCACAC
* * * * * ** * * * * * *
63783365 CAGTAGGCACCGAAGTGCAAATAAATGGGCACCATAGTCCAAAGCGATAGTCACTGAAATGCAAA
1 CAGTAGGCACCAAAGTGCAAATCAGTAGGCATCGGAGTGCAAAGCAATAGGCACCGAAGTGTAAA
*
63783430 T
66 G
* * * *
63783431 CAGTAGGCACCTAAG-GTAGAAT-AGTAGGCATCGAAGTGCAAA--AAGTAGGCA-CTATTA-TG
1 CAGTAGGCACCAAAGTGCA-AATCAGTAGGCATCGGAGTGCAAAGCAA-TAGGCACCGA--AGTG
*
63783490 CAAAG
62 TAAAG
* * *
63783495 CAATAGGCACCAAAGTGCAAATCAGTAGGCATTGTAGTGCAAAGCAATAGGCACCGAAGTGTAGA
1 CAGTAGGCACCAAAGTGCAAATCAGTAGGCATCGGAGTGCAAAGCAATAGGCACCGAAGTGTA-A
63783560 A-
65 AG
* * ** * *
63783561 CAGTAGGCACCATAGTGCAAAAT-AATAGGCATCGGAGTGCAAATTAGTAGGCACCGTAGTGTAA
1 CAGTAGGCACCAAAGTGC-AAATCAGTAGGCATCGGAGTGCAAAGCAATAGGCACCGAAGTGTAA
63783625 AG
65 AG
*
63783627 CAGTATGCACCAAAGTGCAAATCAGTAGGCA
1 CAGTAGGCACCAAAGTGCAAATCAGTAGGCA
63783658 CTGAACTACA
Statistics
Matches: 181, Mismatches: 32, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
63 2 0.01
64 27 0.15
65 44 0.24
66 98 0.54
67 10 0.06
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (66 bp):
CAGTAGGCACCAAAGTGCAAATCAGTAGGCATCGGAGTGCAAAGCAATAGGCACCGAAGTGTAAA
G
Found at i:63784997 original size:30 final size:29
Alignment explanation
Indices: 63784971--63785045 Score: 105
Period size: 30 Copynumber: 2.5 Consensus size: 29
63784961 ATTACATAAA
*
63784971 ATAAATAGTAATATACATAGCATACATGAT
1 ATAAATA-TAATATACATAACATACATGAT
63785001 ATAAACTATAATATACATAACATACATGAT
1 ATAAA-TATAATATACATAACATACATGAT
*
63785031 ATAAACAATAATATA
1 ATAAA-TATAATATA
63785046 TGCAGACACT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
30 40 0.95
31 2 0.05
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.29
Consensus pattern (29 bp):
ATAAATATAATATACATAACATACATGAT
Found at i:63785254 original size:14 final size:15
Alignment explanation
Indices: 63785235--63785272 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
63785225 AATCTTCAAT
63785235 GATATG-CAATCTTA
1 GATATGACAATCTTA
63785249 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
63785266 GATATGA
1 GATATGA
63785273 TTGCAATCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.29
15 1 0.05
17 14 0.67
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:63785261 original size:17 final size:17
Alignment explanation
Indices: 63785241--63785273 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
63785231 CAATGATATG
63785241 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
63785258 CAATCTTAGATATGAT
1 CAATCTTAGATATGAT
63785274 TGCAATCCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:63786473 original size:17 final size:17
Alignment explanation
Indices: 63786451--63786492 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
63786441 AGAAGCTATG
63786451 CTTTCGTAAGGTTTTCA
1 CTTTCGTAAGGTTTTCA
63786468 CTTTCGTAAGGTTTTCA
1 CTTTCGTAAGGTTTTCA
*
63786485 CCTTCGTA
1 CTTTCGTA
63786493 TGAGCTAGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.17, C:0.21, G:0.17, T:0.45
Consensus pattern (17 bp):
CTTTCGTAAGGTTTTCA
Found at i:63796110 original size:11 final size:10
Alignment explanation
Indices: 63796094--63796123 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
63796084 TGAGTTTTCG
63796094 AAAAAAAAGA
1 AAAAAAAAGA
63796104 AAAAAAAAGA
1 AAAAAAAAGA
63796114 AAGAAAAAAG
1 AA-AAAAAAG
63796124 GGAGAGGCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 12 0.63
11 7 0.37
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:63797290 original size:89 final size:88
Alignment explanation
Indices: 63797161--63797557 Score: 245
Period size: 78 Copynumber: 4.7 Consensus size: 88
63797151 ATTCGACGGA
* *
63797161 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGAATGTTTTCACATCAAAGTAGATCCAAGATG
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGAATGTTTACAC-T-AAAGCAGATCCAAGATG
63797226 ATTTGGCATC-CTTGCATT-CACAAG
64 ATTTGGCATCTC-TGCATTACACAAG
* ** * * * *
63797250 GAGCAGATCGAAGACATAGCAGATTTGGCTTTC-ACGTGTTTACGCTGAAGCAGATCCAAGATGA
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGA-ATGTTTACACTAAAGCAGATCCAAGATGA
* * **
63797314 TTTGGCATCTCTGTATTAGACGGG
65 TTTGGCATCTCTGCATTACACAAG
* * *
63797338 GAGCAGATCGAAGACACAGCAGATCTGACCTTC--A----T----TGAAGCAGATCCAAGATGAT
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGAATGTTTACACTAAAGCAGATCCAAGATGAT
* * * *
63797393 TTGGCATCTCTGTATCAGAC-GG
66 TTGGCATCTCTGCATTACACAAG
* * * *
63797415 GAAGCAGATCAAAGACATAACAGAT-TGGACCTTC--A----T----TGAAGCAGATCCAAGATG
1 G-AGCAGATCGAAGACATAGCAGATCT-AACCTTCGAATGTTTACACTAAAGCAGATCCAAGATG
* * ***
63797469 ATTTGGCATCTCTGTATTAGATGGG
64 ATTTGGCATCTCTGCATTACACAAG
* * *
63797494 GAGCAGATCGAAGACATAGCAGATCTGACCTTC-ATGTGTTTACA-TCGAAGCAGATCCAAGATG
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGA-ATGTTTACACT-AAAGCAGATCCAAGATG
63797557 A
64 A
63797558 CAGATTTGGC
Statistics
Matches: 264, Mismatches: 27, Indels: 35
0.81 0.08 0.11
Matches are distributed among these distances:
77 4 0.02
78 134 0.51
79 4 0.02
82 1 0.00
84 1 0.00
87 31 0.12
88 53 0.20
89 36 0.14
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.25
Consensus pattern (88 bp):
GAGCAGATCGAAGACATAGCAGATCTAACCTTCGAATGTTTACACTAAAGCAGATCCAAGATGAT
TTGGCATCTCTGCATTACACAAG
Found at i:63797393 original size:78 final size:78
Alignment explanation
Indices: 63797295--63797528 Score: 398
Period size: 78 Copynumber: 3.0 Consensus size: 78
63797285 GTGTTTACGC
*
63797295 TGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAG
1 TGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAG
63797360 ATCTGACCTTCAT
66 ATCTGACCTTCAT
* * * *
63797373 TGAAGCAGATCCAAGATGATTTGGCATCTCTGTATCAGACGGGAAGCAGATCAAAGACATAACAG
1 TGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAG
63797438 AT-TGGACCTTCAT
66 ATCT-GACCTTCAT
*
63797451 TGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACATAGCAG
1 TGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAG
63797516 ATCTGACCTTCAT
66 ATCTGACCTTCAT
63797529 GTGTTTACAT
Statistics
Matches: 144, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
77 1 0.01
78 142 0.99
79 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (78 bp):
TGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAG
ATCTGACCTTCAT
Found at i:63797677 original size:89 final size:89
Alignment explanation
Indices: 63797558--63797727 Score: 295
Period size: 89 Copynumber: 1.9 Consensus size: 89
63797548 TCCAAGATGA
*
63797558 CAGATTTGGCATCTCTGTATTAGACCGGGAGCAAATCGGAGATAACAGATTTGGCATCTCTGTAT
1 CAGATTTGGCATCTCTGTATTAGACCGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAT
63797623 TAGACGGGGAGCAGATTGGAGAAG
66 TAGACGGGGAGCAGATTGGAGAAG
* * * *
63797647 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAT
1 CAGATTTGGCATCTCTGTATTAGACCGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAT
63797712 TAGACGGGGAGCAGAT
66 TAGACGGGGAGCAGAT
63797728 CAAAGATAGC
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
89 76 1.00
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (89 bp):
CAGATTTGGCATCTCTGTATTAGACCGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAT
TAGACGGGGAGCAGATTGGAGAAG
Found at i:63797734 original size:45 final size:45
Alignment explanation
Indices: 63797468--63797741 Score: 295
Period size: 45 Copynumber: 6.1 Consensus size: 45
63797458 GATCCAAGAT
* *
63797468 GATTTGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* * * * * * * *
63797515 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACA
* * *
63797560 GATTTGGCATCTCTGTATTAGACCGGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * *
63797605 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGGAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
*
63797649 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * *
63797694 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
63797739 GAT
1 GAT
63797742 ATCGCCTTCC
Statistics
Matches: 190, Mismatches: 30, Indels: 16
0.81 0.13 0.07
Matches are distributed among these distances:
43 1 0.01
44 44 0.23
45 115 0.61
46 4 0.02
47 22 0.12
48 4 0.02
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:63798114 original size:19 final size:19
Alignment explanation
Indices: 63798090--63798180 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
63798080 ATAATCTTCA
63798090 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
63798109 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
63798128 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
63798145 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
63798163 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
63798181 AGATATGATT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 36 0.53
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:63798161 original size:35 final size:37
Alignment explanation
Indices: 63798098--63798187 Score: 143
Period size: 35 Copynumber: 2.5 Consensus size: 37
63798088 CAATGATATG
63798098 CAATCTTAGATATGATATGCAATCTTAGATATG-ATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGAATA
63798134 CAATCTTAGATATGAT-TGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGA-ATA
63798171 CAATCTTAGA-A-GATATG
1 CAATCTTAGATATGATATG
63798188 ATTTTGTAAT
Statistics
Matches: 51, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
35 19 0.37
36 19 0.37
37 13 0.25
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (37 bp):
CAATCTTAGATATGATATGCAATCTTAGATATGAATA
Found at i:63799172 original size:13 final size:13
Alignment explanation
Indices: 63799150--63799269 Score: 86
Period size: 13 Copynumber: 9.1 Consensus size: 13
63799140 TGGTTTCGAC
63799150 AATATACATACAT
1 AATATACATACAT
* *
63799163 GATATCCATACAT
1 AATATACATACAT
*
63799176 AATATA-A-ACAAC
1 AATATACATAC-AT
63799188 AATATACATAACAT
1 AATATACAT-ACAT
*
63799202 ACATAAACAGTA-AT
1 A-ATATACA-TACAT
* *
63799216 GTACATAGCATACAT
1 -AATATA-CATACAT
*
63799231 AATATTCATAC-T
1 AATATACATACAT
*
63799243 ACTATACATACAT
1 AATATACATACAT
63799256 AATATACATACAT
1 AATATACATACAT
63799269 A
1 A
63799270 GCAGACATAC
Statistics
Matches: 81, Mismatches: 16, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
11 2 0.02
12 18 0.22
13 35 0.43
14 12 0.15
15 13 0.16
16 1 0.01
ACGTcount: A:0.51, C:0.17, G:0.03, T:0.28
Consensus pattern (13 bp):
AATATACATACAT
Found at i:63799197 original size:25 final size:25
Alignment explanation
Indices: 63799164--63799261 Score: 63
Period size: 25 Copynumber: 3.7 Consensus size: 25
63799154 TACATACATG
*
63799164 ATATCCATACATAATATAAACAACA
1 ATATACATACATAATATAAACAACA
* **
63799189 ATATACATAACAT-ACATAAACAGTA
1 ATATACAT-ACATAATATAAACAACA
* **
63799214 ATGTACATAGCATACATAATATTCATACTA
1 ATATACATA-CATA-AT-ATAAACA-AC-A
*
63799244 CTATACATACATAATATA
1 ATATACATACATAATATA
63799262 CATACATAGC
Statistics
Matches: 54, Mismatches: 12, Indels: 12
0.69 0.15 0.15
Matches are distributed among these distances:
24 1 0.02
25 26 0.48
26 4 0.07
27 4 0.07
28 7 0.13
29 4 0.07
30 8 0.15
ACGTcount: A:0.51, C:0.17, G:0.03, T:0.29
Consensus pattern (25 bp):
ATATACATACATAATATAAACAACA
Found at i:63806381 original size:14 final size:14
Alignment explanation
Indices: 63806346--63806384 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
63806336 TATTAAAACT
*
63806346 CCCTAACCCACTAA
1 CCCTAACCCAATAA
*
63806360 CCCAAACCCAATAA
1 CCCTAACCCAATAA
*
63806374 CCTTAACCCAA
1 CCCTAACCCAA
63806385 CTTGAAAATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.41, C:0.46, G:0.00, T:0.13
Consensus pattern (14 bp):
CCCTAACCCAATAA
Done.