Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 196 of 333
Found at i:64260751 original size:81 final size:81
Alignment explanation
Indices: 64260666--64260876 Score: 257
Period size: 81 Copynumber: 2.6 Consensus size: 81
64260656 AGAGGTATTT
* * *
64260666 CAGTAATT-TCAT-AATCGAGGGTAAAACGATAATTTTTTTAAA-CTGAGGGTAAAATGGTAATT
1 CAGTAATTCT-ATAAATCGAGGGTAAAACGATAA-TTCTATAAATC-GAGGGTAAAATAGTAATT
64260728 TTGTAAATCGAGGGTAAAA
63 TTGTAAATCGAGGGTAAAA
* * * *
64260747 CAGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTG
1 CAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATAGTAATTTTG
* *
64260812 TAAATCGATGGTGAAA
66 TAAATCGAGGGTAAAA
* * * *
64260828 CGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 CAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGG
64260877 CATTTCAGTA
Statistics
Matches: 114, Mismatches: 13, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
81 95 0.83
82 19 0.17
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (81 bp):
CAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATAGTAATTTTG
TAAATCGAGGGTAAAA
Found at i:64260896 original size:81 final size:81
Alignment explanation
Indices: 64260710--64260876 Score: 271
Period size: 81 Copynumber: 2.1 Consensus size: 81
64260700 TTTTTAAACT
* * *
64260710 GAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATTGAGGGTAAAAT
1 GAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAT
*
64260775 GGTAATTCTATAAATC
66 GGTAATTCTACAAATC
* * *
64260791 GAGGGTAAAATAGTAATTTTGTAAATCGATGGTGAAACGGTAATTCTATAAATCGAGGGTAAAAT
1 GAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAT
64260856 GGTAATTCTACAAATC
66 GGTAATTCTACAAATC
64260872 GAGGG
1 GAGGG
64260877 CATTTCAGTA
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (81 bp):
GAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAT
GGTAATTCTACAAATC
Found at i:64263150 original size:31 final size:31
Alignment explanation
Indices: 64263109--64263172 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
64263099 CCTTTTCATA
*
64263109 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
64263140 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
64263171 TT
1 TT
64263173 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:64263419 original size:24 final size:24
Alignment explanation
Indices: 64263367--64263583 Score: 278
Period size: 25 Copynumber: 9.0 Consensus size: 24
64263357 GCTTTATCAT
*
64263367 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
64263392 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
*
64263416 ATAACTGGGGCATAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
* *
64263440 ATAACTGGGGCATAAGCCCTTCATC
1 ATAACTGGGGCATAAGCCCTT-TTA
*
64263465 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
*
64263490 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
64263515 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
64263538 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
**
64263561 ATAACAAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
64263584 GCACTTCCTC
Statistics
Matches: 178, Mismatches: 10, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
23 41 0.23
24 57 0.32
25 80 0.45
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:64263657 original size:20 final size:20
Alignment explanation
Indices: 64263629--64263679 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
64263619 GCATTTATGA
* *
64263629 ACATCTCATGTGTATATCAT
1 ACATATCATGTGCATATCAT
64263649 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
64263669 ACATGTCATGT
1 ACATATCATGT
64263680 TTATCAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:64263744 original size:25 final size:25
Alignment explanation
Indices: 64263716--64263763 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
64263706 ATATATAAAC
* * *
64263716 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
64263741 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
64263764 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:64265835 original size:14 final size:13
Alignment explanation
Indices: 64265812--64265842 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
64265802 AGAATTGGAA
64265812 AGTTAGTTGCAAG
1 AGTTAGTTGCAAG
64265825 AGTTAAGTTGCAAG
1 AGTT-AGTTGCAAG
64265839 AGTT
1 AGTT
64265843 GGCAGATAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.32, C:0.06, G:0.29, T:0.32
Consensus pattern (13 bp):
AGTTAGTTGCAAG
Found at i:64272830 original size:24 final size:24
Alignment explanation
Indices: 64272788--64272836 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
64272778 AGAAGCTACA
*
64272788 ATGTAGGTTGTGGACAAAGCCACC
1 ATGTAAGTTGTGGACAAAGCCACC
**
64272812 ATGTAAGTTGTGGGTAAAGCCACC
1 ATGTAAGTTGTGGACAAAGCCACC
64272836 A
1 A
64272837 ATTCTTCCTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.22
Consensus pattern (24 bp):
ATGTAAGTTGTGGACAAAGCCACC
Found at i:64279928 original size:24 final size:24
Alignment explanation
Indices: 64279876--64280043 Score: 216
Period size: 25 Copynumber: 7.0 Consensus size: 24
64279866 ACTTTATCAT
*
64279876 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
64279901 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
* *
64279925 ATAACTGGGGCATAAGCCCTTCATC
1 ATAACTGGGGCATAAGCCCTT-TTA
*
64279950 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
64279975 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
64279998 ATAACTGGGGCATAAGCGC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
64280021 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
64280044 GCACTTCCTC
Statistics
Matches: 129, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
23 41 0.32
24 33 0.26
25 55 0.43
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:64279928 original size:49 final size:48
Alignment explanation
Indices: 64279875--64280043 Score: 218
Period size: 49 Copynumber: 3.5 Consensus size: 48
64279865 TACTTTATCA
* *
64279875 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
* *
64279924 TATAACTGGGGCATAAGCCCTTCATCATAACTGGGGCATAAGCCCTTTAT
1 TATAACTGGGGCATAAGCCCTT-TTAATAACTGGGGCATAAGCCCTTT-T
* *
64279974 CATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCGC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
64280020 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
64280044 GCACTTCCTC
Statistics
Matches: 107, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
46 20 0.19
47 5 0.05
48 26 0.24
49 36 0.34
50 20 0.19
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:64280005 original size:23 final size:23
Alignment explanation
Indices: 64279897--64280042 Score: 211
Period size: 23 Copynumber: 6.1 Consensus size: 23
64279887 CCTAGCCTCT
*
64279897 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
64279920 TTTTTATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
64279944 TTCATCATAACTGGGGCATAAGCCC
1 TT--TAATAACTGGGGCATAAGCCC
64279969 TTTATCATAACTGGGGCATAAGCCC
1 TTTA--ATAACTGGGGCATAAGCCC
*
64279994 TTTAATAACTGGGGCATAAGCGC
1 TTTAATAACTGGGGCATAAGCCC
64280017 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
64280040 TTT
1 TTT
64280043 TGCACTTCCT
Statistics
Matches: 112, Mismatches: 6, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
23 46 0.41
24 21 0.19
25 45 0.40
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:64280117 original size:20 final size:20
Alignment explanation
Indices: 64280089--64280159 Score: 106
Period size: 20 Copynumber: 3.5 Consensus size: 20
64280079 GCATTTATGA
* *
64280089 ACATCTCATGTGTATATCAT
1 ACATATCATGTGCATATCAT
64280109 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
* *
64280129 ACATGTCATGCGCATATCAT
1 ACATATCATGTGCATATCAT
64280149 ACATATCATGT
1 ACATATCATGT
64280160 TTATCAAAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:64281622 original size:27 final size:27
Alignment explanation
Indices: 64281499--64281705 Score: 148
Period size: 27 Copynumber: 7.6 Consensus size: 27
64281489 CATCCTACAA
* * * *
64281499 GGGTGTTTTGGTAAATCTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
** * *
64281526 GGGTATTTCAGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * * *
64281553 TGGTATTTCT-ATAATTTTTAGAAAGTCAA
1 GGGTATTT-TGGTAA-TTTTACAAA-CCAG
* * **
64281582 AGGTATTTTTGTAATTTTGTAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
**
64281609 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACCAG
**
64281635 AGGGTATTCCGGTAATTTTACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACCAG
* * *
64281663 TGGTATTTTGGTAATTTTAAAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
64281690 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
64281706 CTATCTTACA
Statistics
Matches: 141, Mismatches: 33, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
26 1 0.01
27 110 0.78
28 17 0.12
29 13 0.09
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:64281799 original size:27 final size:27
Alignment explanation
Indices: 64281737--64281935 Score: 220
Period size: 27 Copynumber: 7.3 Consensus size: 27
64281727 GTTATTTCAT
* * * *
64281737 AATCGAGGGTAAAACGATAATTTTTTTA
1 AATCGAGGGTAAAATGGTAA-TTCTATA
* *
64281765 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTATA
** *
64281792 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
64281819 AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
64281846 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
64281873 AATCGATGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
64281900 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTATA
64281927 AATCGAGGG
1 AATCGAGGG
64281936 CATTTCAGTA
Statistics
Matches: 145, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
27 128 0.88
28 17 0.12
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:64281955 original size:81 final size:81
Alignment explanation
Indices: 64281769--64281935 Score: 271
Period size: 81 Copynumber: 2.1 Consensus size: 81
64281759 TTTTTAAACT
* * *
64281769 GAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATTGAGGGTAAAAT
1 GAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAT
*
64281834 GGTAATTCTATAAATC
66 GGTAATTCTACAAATC
* * *
64281850 GAGGGTAAAATAGTAATTTTGTAAATCGATGGTGAAACGGTAATTCTATAAATCGAGGGTAAAAT
1 GAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAT
64281915 GGTAATTCTACAAATC
66 GGTAATTCTACAAATC
64281931 GAGGG
1 GAGGG
64281936 CATTTCAGTA
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (81 bp):
GAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAT
GGTAATTCTACAAATC
Found at i:64284223 original size:30 final size:31
Alignment explanation
Indices: 64284167--64284229 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
64284157 CCTTTTCATA
*
64284167 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
64284198 TTTCAAATTTCATATTACT-GGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
64284228 TT
1 TT
64284230 ACTGTAAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 13 0.45
31 16 0.55
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:64284475 original size:24 final size:24
Alignment explanation
Indices: 64284423--64284637 Score: 269
Period size: 24 Copynumber: 9.0 Consensus size: 24
64284413 GCTTTATCAT
*
64284423 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
64284448 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
*
64284472 ATAACTGGGGCATAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
* *
64284496 ATAACTGGGGCATAAGCCCTTCATC
1 ATAACTGGGGCATAAGCCCTT-TTA
*
64284521 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
*
64284546 ATAACTGGGGCATAAG-CCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
64284570 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
64284593 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
64284616 ATAAC-AGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
64284638 GCACTTCCTC
Statistics
Matches: 176, Mismatches: 9, Indels: 12
0.89 0.05 0.06
Matches are distributed among these distances:
22 12 0.07
23 32 0.18
24 78 0.44
25 54 0.31
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:64284475 original size:49 final size:48
Alignment explanation
Indices: 64284423--64284637 Score: 278
Period size: 49 Copynumber: 4.5 Consensus size: 48
64284413 GCTTTATCAT
* * *
64284423 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTC
* *
64284472 ATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGCCCTTCATC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTT-TTC
*
64284521 ATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAG-CCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TAATAACTGGGGCATAAGCCCTTT-TC
*
64284570 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTC
*
64284616 ATAAC-AGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
64284638 GCACTTCCTC
Statistics
Matches: 150, Mismatches: 10, Indels: 15
0.86 0.06 0.09
Matches are distributed among these distances:
45 12 0.08
46 9 0.06
47 19 0.13
48 33 0.22
49 60 0.40
50 17 0.11
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTC
Found at i:64284711 original size:20 final size:20
Alignment explanation
Indices: 64284683--64284733 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
64284673 GCATTTATGA
* *
64284683 ACATCTCATGTGTATATCAT
1 ACATATCATGTGCATATCAT
64284703 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
64284723 ACATGTCATGT
1 ACATATCATGT
64284734 TTATCAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:64284811 original size:24 final size:24
Alignment explanation
Indices: 64284770--64284816 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
64284760 ATATATAAAC
* * *
64284770 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGCAAAACGGTCATTTTA
64284794 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
64284817 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:64286114 original size:27 final size:27
Alignment explanation
Indices: 64286084--64286191 Score: 94
Period size: 27 Copynumber: 3.9 Consensus size: 27
64286074 GTAAATCTAC
*
64286084 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
*
64286111 AAACCAATGGTATTTTTA-TAATTTT-T
1 AAACCAAGGGTA-TTTTAGTAATTTTGT
* *
64286137 AGAAAGTCAAGGGTATTTTTGTAATTTTGT
1 --AAA-CCAAGGGTATTTTAGTAATTTTGT
** * *
64286167 AAATTAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTTAGTAATTTT
64286192 ACAAATTGAG
Statistics
Matches: 67, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
26 1 0.01
27 37 0.55
28 14 0.21
29 14 0.21
30 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTGT
Found at i:64286197 original size:27 final size:27
Alignment explanation
Indices: 64286147--64286271 Score: 126
Period size: 27 Copynumber: 4.6 Consensus size: 27
64286137 AGAAAGTCAA
* ** *
64286147 GGGTATTTTTGTAATTTTGTAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
64286174 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
64286200 AGGGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
* *
64286228 TGGTATTTTGGTAATTTTAGAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
64286255 TGGTATTTTGATAATTT
1 GGGTATTTTGGTAATTT
64286272 ATCTTAGGGG
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
26 2 0.02
27 79 0.96
28 1 0.01
ACGTcount: A:0.28, C:0.06, G:0.22, T:0.45
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:64286428 original size:79 final size:81
Alignment explanation
Indices: 64286330--64286494 Score: 253
Period size: 79 Copynumber: 2.1 Consensus size: 81
64286320 TTTTTAAACT
* *
64286330 GAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATC-AGGGTAAAAT
1 GAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAT
*
64286394 -GTAATTCTATAAATC
66 GGTAATTCTACAAATC
* * * *
64286409 GAGGGTAAAATAGTAATTTTGTAAATCGATGGTGAAACGGTAATTTTATAAATCGAGGGTAAAAT
1 GAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAT
64286474 GGTAATTCTACAAATC
66 GGTAATTCTACAAATC
64286490 GAGGG
1 GAGGG
64286495 CATTTTAATA
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
79 48 0.62
80 10 0.13
81 19 0.25
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (81 bp):
GAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAT
GGTAATTCTACAAATC
Found at i:64286488 original size:27 final size:27
Alignment explanation
Indices: 64286299--64286494 Score: 202
Period size: 27 Copynumber: 7.3 Consensus size: 27
64286289 GTAATTTCAC
* * *
64286299 AATCGAGGG-AAAACGGTAATTTTTTTA
1 AATCGAGGGTAAAATGGTAA-TTCTATA
* *
64286326 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTATA
** *
64286353 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
64286380 AATC-AGGGTAAAAT-GTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
64286405 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * * *
64286432 AATCGATGGTGAAACGGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
64286459 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTATA
64286486 AATCGAGGG
1 AATCGAGGG
64286495 CATTTTAATA
Statistics
Matches: 145, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
25 14 0.10
26 20 0.14
27 101 0.70
28 10 0.07
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:64291236 original size:16 final size:16
Alignment explanation
Indices: 64291215--64291265 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
64291205 ATGTATCAAC
*
64291215 AAAAGCTGAAATGCCG
1 AAAAGCTGAAAAGCCG
*
64291231 AAAAGCCGAAAAGCC-
1 AAAAGCTGAAAAGCCG
64291246 AAAATGCTGAAAAGCCG
1 AAAA-GCTGAAAAGCCG
64291263 AAA
1 AAA
64291266 GTTTAGCTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
15 4 0.13
16 23 0.77
17 3 0.10
ACGTcount: A:0.51, C:0.20, G:0.22, T:0.08
Consensus pattern (16 bp):
AAAAGCTGAAAAGCCG
Found at i:64291238 original size:8 final size:8
Alignment explanation
Indices: 64291215--64291265 Score: 59
Period size: 8 Copynumber: 6.4 Consensus size: 8
64291205 ATGTATCAAC
*
64291215 AAAAGCTG
1 AAAAGCCG
*
64291223 AAATGCCG
1 AAAAGCCG
64291231 AAAAGCCG
1 AAAAGCCG
64291239 AAAAGCC-
1 AAAAGCCG
*
64291246 AAAATGCTG
1 AAAA-GCCG
64291255 AAAAGCCG
1 AAAAGCCG
64291263 AAA
1 AAA
64291266 GTTTAGCTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
7 4 0.11
8 28 0.78
9 4 0.11
ACGTcount: A:0.51, C:0.20, G:0.22, T:0.08
Consensus pattern (8 bp):
AAAAGCCG
Found at i:64291560 original size:29 final size:29
Alignment explanation
Indices: 64291475--64291588 Score: 137
Period size: 28 Copynumber: 4.0 Consensus size: 29
64291465 GTGAGCATGA
* * *
64291475 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
64291503 ATATAAATGTGATTT-GGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
64291531 ATATACAA-GTGATTTGGGCCTAATGGGCC
1 ATATA-AATGTGATTTGGGCCTAATGGGCC
* * *
64291560 ATATAAATATGA-ATGGGCTTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
64291588 A
1 A
64291589 GATACAGGTA
Statistics
Matches: 76, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
28 52 0.68
29 24 0.32
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:64292628 original size:22 final size:21
Alignment explanation
Indices: 64292594--64292638 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
64292584 CTTTCGTAAC
**
64292594 TTTTTTTAGTTAATTAGGGTT
1 TTTTTTTAGTTAAGAAGGGTT
*
64292615 TTTTTTTATTTTAAGAAGGGTT
1 TTTTTTTA-GTTAAGAAGGGTT
64292637 TT
1 TT
64292639 CAATGAAAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.20, C:0.00, G:0.18, T:0.62
Consensus pattern (21 bp):
TTTTTTTAGTTAAGAAGGGTT
Found at i:64292666 original size:17 final size:18
Alignment explanation
Indices: 64292633--64292667 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
64292623 TTTTAAGAAG
64292633 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
64292651 GGTTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
64292668 TTCAATGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:64304086 original size:27 final size:27
Alignment explanation
Indices: 64304056--64304117 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
64304046 TTTTACTAAA
*
64304056 ATACCCCTAAGTATG-AAAATTACTATT
1 ATACCCCTAAG-ATGCAAAATTACCATT
*
64304083 ATACCCCT-AGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCATT
64304109 ATACCCCTA
1 ATACCCCTA
64304118 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 2 0.06
26 21 0.68
27 8 0.26
ACGTcount: A:0.37, C:0.26, G:0.08, T:0.29
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCATT
Found at i:64304263 original size:27 final size:28
Alignment explanation
Indices: 64304225--64304323 Score: 139
Period size: 27 Copynumber: 3.6 Consensus size: 28
64304215 GGAAGCATTT
64304225 TGGTGGCTCTGCCACAAATATCTA-ATC
1 TGGTGGCTCTGCCACAAATATCTATATC
*
64304252 TGGTGGCTCTGCCACAAATATCTATTTC
1 TGGTGGCTCTGCCACAAATATCTATATC
*
64304280 TGGTGGCTCTGCCAC-AATATCTGTATC
1 TGGTGGCTCTGCCACAAATATCTATATC
* * *
64304307 TAGTGACTCTGTCACAA
1 TGGTGGCTCTGCCACAA
64304324 TATTTGTTCT
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 46 0.72
28 18 0.28
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.32
Consensus pattern (28 bp):
TGGTGGCTCTGCCACAAATATCTATATC
Found at i:64311796 original size:27 final size:27
Alignment explanation
Indices: 64311745--64311855 Score: 163
Period size: 27 Copynumber: 4.1 Consensus size: 27
64311735 AACATGGCTG
*
64311745 CCAGAACAGATAA-TGTGACAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
64311771 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
64311798 CCAGAATAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
64311825 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
64311852 CCAG
1 CCAG
64311856 GACGCTTCCT
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
26 15 0.19
27 60 0.78
28 2 0.03
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:64315448 original size:39 final size:40
Alignment explanation
Indices: 64315390--64315518 Score: 102
Period size: 40 Copynumber: 3.3 Consensus size: 40
64315380 AATCAAGCAT
* * *
64315390 CTTCGGGT-TT-AGCCGGATATAACCACTCGCA-CAAGGC
1 CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
*** *
64315427 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
* * ** * * *
64315467 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
*
64315507 CTTCGGATCTTA
1 CTTCGGGTCTTA
64315519 GCCCAGATGT
Statistics
Matches: 75, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
37 8 0.11
38 2 0.03
39 16 0.21
40 49 0.65
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
Found at i:64315472 original size:40 final size:41
Alignment explanation
Indices: 64315425--64315609 Score: 234
Period size: 40 Copynumber: 4.6 Consensus size: 41
64315415 CTCGCACAAG
* * * * * *
64315425 GCCTTCGGGTCTTAACCCGGATATGGTCAC-TAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
64315465 GCCTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* *
64315505 GCCTTC-GGATCTTAGCCCAGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
64315546 GCCTTC-GGACTTAGCCCGGATATAGTCCCTTAGCACAAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
64315586 GCCTTCGGAACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
64315610 CATTCGAGTA
Statistics
Matches: 130, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
39 3 0.02
40 93 0.72
41 34 0.26
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
Found at i:64315592 original size:81 final size:81
Alignment explanation
Indices: 64315455--64315603 Score: 237
Period size: 81 Copynumber: 1.8 Consensus size: 81
64315445 ATATGGTCAC
* * * * *
64315455 TAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGATCTTAG
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCCCTAGCACAAAAGCCTTCGGAACTTAG
64315520 CCCAGATGTAGTCGCT
66 CCCAGATGTAGTCGCT
64315536 TAGCACAAAAGCCTTC-GGACTTAGCCCGGATATAGTCCCTTAGCACAAAAGCCTTCGGAACTTA
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCCC-TAGCACAAAAGCCTTCGGAACTTA
64315600 GCCC
65 GCCC
64315604 GGATATCATT
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
80 22 0.35
81 40 0.65
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (81 bp):
TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCCCTAGCACAAAAGCCTTCGGAACTTAG
CCCAGATGTAGTCGCT
Found at i:64318238 original size:28 final size:28
Alignment explanation
Indices: 64318170--64318283 Score: 119
Period size: 27 Copynumber: 4.2 Consensus size: 28
64318160 GGAGGAAACG
* *
64318170 TTCTGGTGGCTCTGCTACAAATACCT-T
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
64318197 ATCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
64318225 TTCTGGTGGCTCTGCCA-TAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * * * *
64318252 ATCTTGTGACTCTGTCGC-AATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
64318278 TTCTGG
1 TTCTGG
64318284 CAGTCGTGCT
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
26 4 0.05
27 52 0.71
28 17 0.23
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.38
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:64318255 original size:55 final size:52
Alignment explanation
Indices: 64318169--64318283 Score: 133
Period size: 55 Copynumber: 2.1 Consensus size: 52
64318159 TGGAGGAAAC
*
64318169 GTTCTGGTGGCTCTGCTACAAATACCTTATCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTGC-ACAAATACCTTATCTGGTGACTCTGCCAC-AATATCT
* * * *
64318223 GTTTCTGGTGGCTCTGC-CATAATATCTGTATCTTGTGACTCTGTCGCAATATCT
1 G-TTCTGGTGGCTCTGCACA-AATACCT-TATCTGGTGACTCTGCCACAATATCT
64318277 GTTCTGG
1 GTTCTGG
64318284 CAGTCGTGCT
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
53 8 0.15
54 15 0.28
55 30 0.57
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.37
Consensus pattern (52 bp):
GTTCTGGTGGCTCTGCACAAATACCTTATCTGGTGACTCTGCCACAATATCT
Found at i:64321765 original size:45 final size:45
Alignment explanation
Indices: 64321705--64321805 Score: 132
Period size: 45 Copynumber: 2.2 Consensus size: 45
64321695 ATAGTCAAAG
* * **
64321705 CTATCTTAATCAATCTTGCACTGAAGTGAC-AATACATAGCCGAAA
1 CTATCTCAATAAATCTTGCACCAAAGTG-CTAATACATAGCCGAAA
* *
64321750 CTATCTCAATAAATCTTGCACCAAAGTGCTAATACATAGTCGAAG
1 CTATCTCAATAAATCTTGCACCAAAGTGCTAATACATAGCCGAAA
64321795 CTATCTCAATA
1 CTATCTCAATA
64321806 TCATATCTCA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
44 1 0.02
45 48 0.98
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.28
Consensus pattern (45 bp):
CTATCTCAATAAATCTTGCACCAAAGTGCTAATACATAGCCGAAA
Found at i:64326177 original size:79 final size:78
Alignment explanation
Indices: 64326075--64326297 Score: 256
Period size: 79 Copynumber: 2.8 Consensus size: 78
64326065 GCTCCTCGTT
* *
64326075 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
64326140 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
64326155 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
64326218 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * * *
64326233 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTTGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
64326296 GA
63 GA
64326298 CATCATTCAA
Statistics
Matches: 124, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
78 46 0.37
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:64326192 original size:39 final size:40
Alignment explanation
Indices: 64326075--64326297 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
64326065 GCTCCTCGTT
* *
64326075 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
64326115 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
64326155 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
64326194 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
64326233 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
*
64326274 C-AA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64326298 CATCATTCAA
Statistics
Matches: 165, Mismatches: 10, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 88 0.53
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:64333939 original size:40 final size:40
Alignment explanation
Indices: 64333895--64334156 Score: 328
Period size: 39 Copynumber: 6.7 Consensus size: 40
64333885 GCTCCTCGTT
* *
64333895 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
64333935 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
64333975 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
64334014 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
64334053 CAAATGCCTTCGAG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
64334092 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
64334133 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64334157 CATCATTCAA
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
38 1 0.00
39 127 0.63
40 64 0.32
41 11 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:64336740 original size:20 final size:20
Alignment explanation
Indices: 64336712--64336755 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
64336702 TACCAACCTG
* *
64336712 CAACTTACCATAGTCTTTCA
1 CAACATACCATAGCCTTTCA
* *
64336732 CAACATACCCTAGCCTTTCC
1 CAACATACCATAGCCTTTCA
64336752 CAAC
1 CAAC
64336756 TTTAACATTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.39, G:0.05, T:0.27
Consensus pattern (20 bp):
CAACATACCATAGCCTTTCA
Found at i:64336903 original size:43 final size:43
Alignment explanation
Indices: 64336841--64336962 Score: 142
Period size: 43 Copynumber: 2.9 Consensus size: 43
64336831 TACCATACCA
* **
64336841 ATGCCATAT-CCTAGATATGGTCTTACATGGGATCTCATATAG
1 ATGCCATATGCCTAGATATGGTCTTACACGAAATCTCATATAG
* * *
64336883 ATGCCA-ATGGCCTAGCTATGGTCTTGCACGAAATCTCATATCG
1 ATGCCATAT-GCCTAGATATGGTCTTACACGAAATCTCATATAG
* *
64336926 ATGCCATATTCC-AGATATGGTCTTACACGTAATCTCA
1 ATGCCATATGCCTAGATATGGTCTTACACGAAATCTCA
64336963 ACTAACTTTA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
41 2 0.03
42 28 0.42
43 35 0.52
44 2 0.03
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (43 bp):
ATGCCATATGCCTAGATATGGTCTTACACGAAATCTCATATAG
Found at i:64343554 original size:27 final size:27
Alignment explanation
Indices: 64343523--64343700 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
64343513 TAAATTGTAC
64343523 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
64343550 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
64343576 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
64343604 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
64343632 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
64343659 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
64343686 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
64343701 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:64343637 original size:82 final size:81
Alignment explanation
Indices: 64343524--64343679 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
64343514 AAATTGTACA
* *
64343524 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
64343588 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
64343605 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
64343670 TGCGAGTTGA
65 TGCGAATTGA
64343680 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:64343691 original size:82 final size:81
Alignment explanation
Indices: 64343520--64343700 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
64343510 GATTAAATTG
* *
64343520 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
64343585 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
64343601 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
64343665 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
64343683 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
64343701 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:64351212 original size:27 final size:27
Alignment explanation
Indices: 64351181--64351358 Score: 198
Period size: 27 Copynumber: 6.6 Consensus size: 27
64351171 TAAATTGTAC
64351181 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* **
64351208 TGCACTAAGTGTGCGAAATGA--ATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
64351233 GATGCACTAAGTGTGCGAATTGACCATGC
1 -A-GCACTAAGTGTGCGATTTGACTATGT
*
64351262 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
64351290 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
64351317 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
64351344 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
64351359 GACTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
25 4 0.03
27 99 0.77
28 23 0.18
29 3 0.02
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:64351322 original size:82 final size:81
Alignment explanation
Indices: 64351182--64351337 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
64351172 AAATTGTACA
* *
64351182 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATGTGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACGTGATGCACTAAGTGT
64351247 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
**
64351263 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGT-A-GCACTAAG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGA--ACGTGATGCACTAAG
*
64351326 TGTGCGAGTTGA
63 TGTGCGAATTGA
64351338 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
81 15 0.22
82 48 0.72
83 1 0.01
84 3 0.04
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACGTGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:64351349 original size:82 final size:81
Alignment explanation
Indices: 64351178--64351358 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
64351168 GATTAAATTG
* *
64351178 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATGTGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACGTGATGCACTAA
64351243 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * **
64351259 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGT-A-GCAC
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGA--ACGTGATGCAC
* **
64351322 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
64351341 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
64351359 GACTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 17 0.20
82 63 0.75
83 1 0.01
84 3 0.04
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACGTGATGCACTAA
GTGTGCGAATTGACCA
Found at i:64354547 original size:39 final size:40
Alignment explanation
Indices: 64354492--64354604 Score: 149
Period size: 40 Copynumber: 2.9 Consensus size: 40
64354482 TATCTAGCAC
* * *
64354492 AGCCTGCAGGTTTTTAA-CCAGGATGTC-ATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCAGGAT-ACAATTCCAGCACGA
* *
64354531 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATGA
1 AGCCTGCGGGTCTTTAAGCCAGGATACAATTCCAGCACGA
*
64354571 AGCCTGCGGGTCTTTAAGCCTGGATACAATTCCA
1 AGCCTGCGGGTCTTTAAGCCAGGATACAATTCCA
64354605 CATCAAATAA
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 16 0.24
40 50 0.76
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCAGGATACAATTCCAGCACGA
Found at i:64354573 original size:40 final size:40
Alignment explanation
Indices: 64354519--64354604 Score: 154
Period size: 40 Copynumber: 2.1 Consensus size: 40
64354509 CCAGGATGTC
64354519 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
* *
64354559 ATTCCAGCATGAAGCCTGCGGGTCTTTAAGCCTGGATACA
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
64354599 ATTCCA
1 ATTCCA
64354605 CATCAAATAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
Found at i:64359429 original size:40 final size:40
Alignment explanation
Indices: 64359379--64359607 Score: 379
Period size: 40 Copynumber: 5.7 Consensus size: 40
64359369 TCTACTTGCT
64359379 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
64359419 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
64359459 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
64359499 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
64359539 CAAGTGTCTTCGGGACTTAGCCCGGATT-TAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
64359579 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
64359608 CATCCGAATA
Statistics
Matches: 175, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 2 0.01
40 172 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:64365111 original size:40 final size:39
Alignment explanation
Indices: 64365074--64365251 Score: 189
Period size: 40 Copynumber: 4.5 Consensus size: 39
64365064 ATATCCGGAC
64365074 TAAGATCCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGT
* *
64365114 TAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * *
64365154 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * * * *
64365194 TATGTCCCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGC
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
*
64365233 TACGTCCCGAAGGCATTTG
1 TAAGT-CCGAAGGCATTTG
64365252 AACGAGGAGC
Statistics
Matches: 120, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 33 0.28
40 84 0.70
41 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
Found at i:64365164 original size:80 final size:79
Alignment explanation
Indices: 64365080--64365251 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
64365070 GGACTAAGAT
*
64365080 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
64365144 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
64365160 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
64365225 AACCGGGCTACGTC
66 AACCGGGCTAAGTC
64365239 CCGAAGGCATTTG
1 CCGAAGGCATTTG
64365252 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:64365269 original size:79 final size:80
Alignment explanation
Indices: 64365107--64365284 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
64365097 AGATACAAAT
* * * *
64365107 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
64365172 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
64365187 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTACGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
64365251 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
64365266 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
64365285 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:64370022 original size:40 final size:40
Alignment explanation
Indices: 64369978--64370056 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
64369968 GATATCATTC
*
64369978 CAGCACGAAGCCTGTGGGTCTTTAAGCCTAGATACAATTT
1 CAGCACGAAGCCTGTGGGTCTTTAAGCCCAGATACAATTT
*
64370018 CAGCACGAAGCCTGTGGGTCTTTAAGCCCGGATACAATT
1 CAGCACGAAGCCTGTGGGTCTTTAAGCCCAGATACAATT
64370057 CCACATCAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (40 bp):
CAGCACGAAGCCTGTGGGTCTTTAAGCCCAGATACAATTT
Found at i:64374473 original size:20 final size:20
Alignment explanation
Indices: 64374445--64374488 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
64374435 TAACAACTTG
*
64374445 CAACTTACCATAGTCTTTCA
1 CAACATACCATAGTCTTTCA
* *
64374465 CAACATACCATAGTTTTTCC
1 CAACATACCATAGTCTTTCA
64374485 CAAC
1 CAAC
64374489 TTTAACATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.32, G:0.05, T:0.32
Consensus pattern (20 bp):
CAACATACCATAGTCTTTCA
Found at i:64386361 original size:47 final size:47
Alignment explanation
Indices: 64386307--64386576 Score: 443
Period size: 47 Copynumber: 5.7 Consensus size: 47
64386297 TTAGGATTCT
* * * *
64386307 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
64386354 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
64386401 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
64386448 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
64386495 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCTAATGGCTG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
64386542 ATGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
64386577 TCCCGAAGGG
Statistics
Matches: 211, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 210 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:64386751 original size:37 final size:37
Alignment explanation
Indices: 64386695--64386773 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
64386685 CCGAGCTCTA
* * *
64386695 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
64386732 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
64386769 AAGAC
1 AAGAC
64386774 TTTGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:64388352 original size:40 final size:40
Alignment explanation
Indices: 64387989--64388340 Score: 587
Period size: 40 Copynumber: 8.8 Consensus size: 40
64387979 GAGAATTGAG
64387989 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
64388029 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
64388069 AGTGATATATCCGGTCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
64388109 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
64388149 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
64388189 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
64388229 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
64388269 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
64388309 GGTGTTATATCCGGGCTAGGTCTCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
64388341 ATCATGCTGG
Statistics
Matches: 292, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 292 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:64392112 original size:47 final size:47
Alignment explanation
Indices: 64392052--64392556 Score: 850
Period size: 47 Copynumber: 10.7 Consensus size: 47
64392042 TTAGGATTCT
* * * *
64392052 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
64392099 CTGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
64392146 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
64392193 ATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
64392240 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
64392287 ATGTGATGAATGTGAAAGTGTAAATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
64392334 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
64392381 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
64392428 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
64392475 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
64392522 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
64392557 TCCCGAAGGG
Statistics
Matches: 435, Mismatches: 22, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
46 1 0.00
47 434 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:64392731 original size:37 final size:37
Alignment explanation
Indices: 64392675--64392753 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
64392665 CCGAGCTCTA
* * *
64392675 AAGACCCAATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCAATAACTACGTGTGGAGATTATGTCCGGGT
* * *
64392712 AAGACCCGATAACTTCGTGTGGAGATTATGTCTGGGT
1 AAGACCCAATAACTACGTGTGGAGATTATGTCCGGGT
64392749 AAGAC
1 AAGAC
64392754 TTTGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCAATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:64396050 original size:40 final size:40
Alignment explanation
Indices: 64395959--64396196 Score: 229
Period size: 40 Copynumber: 6.3 Consensus size: 40
64395949 ACCCAATTAT
* *
64395959 CTTC-GGATTTAG-CCGGATATA--ACACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTA-ACTCGCACAAATGC
* * * * * *
64395995 CATCGGGTCTTAGCCCGGATATGGTCAGTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
*
64396035 CTTCAGGACTTAGCCCGGATATAGTAACTCGCAC-AATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
64396074 CTT--GGACTTAGCCCGGAT-TAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
64396111 CTTCGGGACTTAG-CC-GA-AT--TAACTCGCAC-AATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* * * *
64396145 CTTCGGGACTTAGCCCGGA-ATTAATCACTAGCACAAATGT
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGC
64396185 CTTCGGGACTTA
1 CTTCGGGACTTA
64396197 ACCCCGTTAG
Statistics
Matches: 169, Mismatches: 18, Indels: 26
0.79 0.08 0.12
Matches are distributed among these distances:
34 18 0.11
35 12 0.07
36 19 0.11
37 33 0.20
38 10 0.06
39 30 0.18
40 47 0.28
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
Found at i:64396120 original size:76 final size:73
Alignment explanation
Indices: 64396023--64396196 Score: 235
Period size: 74 Copynumber: 2.3 Consensus size: 73
64396013 ATATGGTCAG
*
64396023 TAGCACAAATGCCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAATGCCTT-GGACTTAGCC
1 TAGCACAAATGCCTTCGGGACTTAG-CC-GA-AT--TAACTCGCACAATGCCTTCGGACTTAGCC
*
64396087 CGG-ATTAGTAAC
61 CGGAATTAATAAC
*
64396099 TCGCACAAATGCCTTCGGGACTTAGCCGAATTAACTCGCACAATGCCTTCGGGACTTAGCCCGGA
1 TAGCACAAATGCCTTCGGGACTTAGCCGAATTAACTCGCACAATGCCTTC-GGACTTAGCCCGGA
*
64396164 ATTAATCAC
65 ATTAATAAC
*
64396173 TAGCACAAATGTCTTCGGGACTTA
1 TAGCACAAATGCCTTCGGGACTTA
64396197 ACCCCGTTAG
Statistics
Matches: 89, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
71 18 0.20
73 15 0.17
74 31 0.35
75 2 0.02
76 23 0.26
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (73 bp):
TAGCACAAATGCCTTCGGGACTTAGCCGAATTAACTCGCACAATGCCTTCGGACTTAGCCCGGAA
TTAATAAC
Found at i:64400172 original size:1 final size:1
Alignment explanation
Indices: 64400166--64400272 Score: 214
Period size: 1 Copynumber: 107.0 Consensus size: 1
64400156 AACAAGAATC
64400166 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
64400231 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
64400273 CGAACCGGAG
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 106 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:64401630 original size:27 final size:27
Alignment explanation
Indices: 64401600--64401777 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
64401590 ATATTGAGCC
* *
64401600 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
64401627 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
64401654 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
64401682 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
64401709 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
64401736 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
64401763 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
64401778 GTACAATTTA
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:64401739 original size:82 final size:81
Alignment explanation
Indices: 64401621--64401776 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
64401611 TGCTATATAA
* * * *
64401621 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCA-AATCGCA
64401686 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
64401703 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
64401767 CCCTTAGTGC
65 CACTTAGTGC
64401777 TGTACAATTT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 17 0.27
82 47 0.73
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:64406752 original size:49 final size:48
Alignment explanation
Indices: 64406483--64406989 Score: 794
Period size: 49 Copynumber: 10.6 Consensus size: 48
64406473 CCCTTCGGGA
* * * * *
64406483 CTTATCACATTTATA-CACTTTCACATTTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATCACTTTCACA-TTCATCACATCGGCCATTAGGC
* *
64406531 CCTGTCACATATATA-CACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATCACTTTCACATTCATCACATCGGCCATTAGGC
*
64406578 CTCATCACATATATA-CACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATCACTTTCACATTCATCACATCGGCCATTAGGC
*
64406625 CTCATCACATATATA-CACTTTCACATTCATCACATC-GCCTATTAGGC
1 CTTATCACATATATATCACTTTCACATTCATCACATCGGCC-ATTAGGC
64406672 CTTATCACATATATA-CACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATCACTTTCACATTCATCACATCGGCCATTAGGC
*
64406719 CTTATCACATATATATTCACTTTCACATTCATCACATCGTCCATTAGGC
1 CTTATCACATATATA-TCACTTTCACATTCATCACATCGGCCATTAGGC
64406768 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAT-CACTTTCACATTCATCACATCGGCCATTAGGC
64406817 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAT-CACTTTCACATTCATCACATCGGCCATTAGGC
64406866 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAT-CACTTTCACATTCATCACATCGGCCATTAGGC
* *
64406915 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATAT-CACTTTCACATTCATCACATCGGCCATTAGGC
64406964 CTTATCACATATATA-CACTTTCACAT
1 CTTATCACATATATATCACTTTCACAT
64406990 CACAATTATC
Statistics
Matches: 439, Mismatches: 15, Indels: 11
0.94 0.03 0.02
Matches are distributed among these distances:
46 3 0.01
47 173 0.39
48 26 0.06
49 237 0.54
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (48 bp):
CTTATCACATATATATCACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64415590 original size:119 final size:120
Alignment explanation
Indices: 64415408--64415623 Score: 296
Period size: 119 Copynumber: 1.8 Consensus size: 120
64415398 TCCTCGTTCA
*
64415408 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
64415473 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACC
* * **
64415528 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
64415590 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTA
64415624 GCCCGGACAT
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.05
119 60 0.71
120 20 0.24
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACC
Found at i:64415614 original size:79 final size:79
Alignment explanation
Indices: 64415406--64415630 Score: 256
Period size: 79 Copynumber: 2.8 Consensus size: 79
64415396 GCTCCTCGTT
* * * * * *
64415406 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCAGATATAGTAACTAGCACAAA-GCCTTCGGGACTTAGCCCGG
*
64415471 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
* * *
64415486 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCAGATATAGTAACTAGCA-CAAAGCCTTCGGGACTTAGCCCGG
*
64415550 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
** * * *
64415565 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAACCCAGATATAGTAAC-TAGCACAAAGCCTTCGGGACTTAGCCCG
64415629 GA
64 GA
64415631 CATCATTCAA
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
78 3 0.02
79 59 0.48
80 59 0.48
81 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCAGATATAGTAACTAGCACAAAGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:64415630 original size:40 final size:40
Alignment explanation
Indices: 64415406--64415630 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
64415396 GCTCCTCGTT
* *
64415406 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
64415446 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
64415486 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
64415526 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
64415565 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
64415606 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64415631 CATCATTCAA
Statistics
Matches: 162, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 118 0.73
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:64416859 original size:4 final size:4
Alignment explanation
Indices: 64416840--64416875 Score: 56
Period size: 4 Copynumber: 9.0 Consensus size: 4
64416830 GTTATAAAGT
64416840 TTTA TTT- TTATA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TT-TA TTTA TTTA TTTA TTTA TTTA TTTA
64416876 CTTAGTTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 2 0.07
4 26 0.87
5 2 0.07
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:64419248 original size:27 final size:27
Alignment explanation
Indices: 64419207--64419258 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
64419197 ACAAGTGAGG
64419207 AAAAAGAGAAAGAGAATGAAAAAGAGC
1 AAAAAGAGAAAGAGAATGAAAAAGAGC
** *
64419234 AAAAAGAGATTGAGAGTGAAAAAGA
1 AAAAAGAGAAAGAGAATGAAAAAGA
64419259 AATTGAAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.63, C:0.02, G:0.27, T:0.08
Consensus pattern (27 bp):
AAAAAGAGAAAGAGAATGAAAAAGAGC
Found at i:64420672 original size:4 final size:4
Alignment explanation
Indices: 64420653--64420688 Score: 56
Period size: 4 Copynumber: 9.0 Consensus size: 4
64420643 GTTATAAAGT
64420653 TTTA TTT- TTATA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TT-TA TTTA TTTA TTTA TTTA TTTA TTTA
64420689 CTTAGTTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 2 0.07
4 26 0.87
5 2 0.07
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:64428599 original size:12 final size:12
Alignment explanation
Indices: 64428578--64428611 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
64428568 TTAATAGATA
64428578 TATGAACATTGG
1 TATGAACATTGG
*
64428590 TATTAACATTGG
1 TATGAACATTGG
64428602 TATGAACATT
1 TATGAACATT
64428612 CGGTCAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (12 bp):
TATGAACATTGG
Found at i:64434037 original size:16 final size:16
Alignment explanation
Indices: 64433994--64434038 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
64433984 CATAGACCGG
64433994 CAAAAAGCCGAAATCC
1 CAAAAAGCCGAAATCC
* *
64434010 CAAAATGTCGAAA-CAC
1 CAAAAAGCCGAAATC-C
64434026 CAAAAAGCCGAAA
1 CAAAAAGCCGAAA
64434039 ATTAGGTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
15 1 0.04
16 23 0.96
ACGTcount: A:0.53, C:0.27, G:0.13, T:0.07
Consensus pattern (16 bp):
CAAAAAGCCGAAATCC
Found at i:64445082 original size:28 final size:29
Alignment explanation
Indices: 64444999--64445086 Score: 85
Period size: 28 Copynumber: 3.1 Consensus size: 29
64444989 AGCATGGCTG
* * * *
64444999 CCAGATACAGA-AA-ATGTGACAGAGTCA
1 CCAGATACAGATAATTTGTGGCAGTGCCA
*
64445026 CCAGATACAGATATTTTGTGGCAGTGCCA
1 CCAGATACAGATAATTTGTGGCAGTGCCA
*
64445055 CCAGA-ACATATAATTTGTGGCA-TAGCCA
1 CCAGATACAGATAATTTGTGGCAGT-GCCA
64445083 CCAG
1 CCAG
64445087 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 12 0.24
28 24 0.47
29 15 0.29
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (29 bp):
CCAGATACAGATAATTTGTGGCAGTGCCA
Found at i:64445239 original size:28 final size:28
Alignment explanation
Indices: 64445192--64445256 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
64445182 AAATTAACCC
*
64445192 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
64445220 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
64445248 TAGGGGTAT
1 TAGGGGTAT
64445257 TCTAGTACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:64452923 original size:28 final size:29
Alignment explanation
Indices: 64452850--64452937 Score: 94
Period size: 28 Copynumber: 3.1 Consensus size: 29
64452840 AGCATGGCTG
* * * *
64452850 CCAGATACAGA-AA-ATGTGACAGAGTCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
*
64452877 CCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAATTTGTGGCA-TAGCCA
64452906 CCAGA-ACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
64452934 CCAG
1 CCAG
64452938 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
27 12 0.24
28 25 0.49
29 14 0.27
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (29 bp):
CCAGATACAGATAATTTGTGGCATAGCCA
Found at i:64453090 original size:28 final size:28
Alignment explanation
Indices: 64453043--64453107 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
64453033 AAATTAACCC
* *
64453043 TAGGGGTATAAAGGTCATTTTGTATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
64453071 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
64453099 TAGGGGTAT
1 TAGGGGTAT
64453108 TCTAGTACAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.31, C:0.06, G:0.28, T:0.35
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:64464465 original size:6 final size:6
Alignment explanation
Indices: 64464436--64464514 Score: 63
Period size: 6 Copynumber: 12.8 Consensus size: 6
64464426 TATTAGAACT
* * * *
64464436 AGAATC AAAATG AGAATT AGAATC AGAATC AGGAGA-C AGAATT AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC A-GA-ATC AGAATC AGAATC
*
64464485 AGTATC AGGTAA-C AGAATC AGAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
64464515 GTAAATGCAA
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
5 3 0.05
6 46 0.79
7 7 0.12
8 2 0.03
ACGTcount: A:0.49, C:0.11, G:0.20, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:64464481 original size:25 final size:25
Alignment explanation
Indices: 64464448--64464514 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
64464438 AATCAAAATG
64464448 AGAATTAGAATCAGAATCAGG-AGAC
1 AGAATTAGAATCAGAATCAGGTA-AC
*
64464473 AGAATTAGAATCAGTATCAGGTAAC
1 AGAATTAGAATCAGAATCAGGTAAC
*
64464498 AGAATCAGAATCAGAAT
1 AGAATTAGAATCAGAAT
64464515 GTAAATGCAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
25 37 0.97
26 1 0.03
ACGTcount: A:0.48, C:0.12, G:0.21, T:0.19
Consensus pattern (25 bp):
AGAATTAGAATCAGAATCAGGTAAC
Found at i:64464672 original size:27 final size:26
Alignment explanation
Indices: 64464632--64464711 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
64464622 AGCATGGCTG
*
64464632 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
64464658 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* * *
64464685 CCAGAACAGATAATGTGGCAAAGCCA
1 CCAGAACAGATATTGTGACAGAGCCA
64464711 C
1 C
64464712 TTAACAGAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 25 0.51
27 24 0.49
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:64464898 original size:22 final size:22
Alignment explanation
Indices: 64464870--64464934 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
64464860 GCAAATACGT
*
64464870 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
64464892 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
64464914 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
64464935 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:64465122 original size:27 final size:27
Alignment explanation
Indices: 64465084--64465510 Score: 523
Period size: 27 Copynumber: 15.8 Consensus size: 27
64465074 CGACCTGTAA
64465084 TTCTACCCTACAGGGGTATTTCGGTAT
1 TTCTACCCTACAGGGGTATTTCGGTAT
* * *
64465111 TTCTACCCTACAAGGGTATTTCAGTAA
1 TTCTACCCTACAGGGGTATTTCGGTAT
* ** ** *
64465138 TTCTATCCTATGGGGGTATTTTAGTAA
1 TTCTACCCTACAGGGGTATTTCGGTAT
*
64465165 TTCTACCCTACAGGGGTATTTCGATAT
1 TTCTACCCTACAGGGGTATTTCGGTAT
* *
64465192 TTCTACCCTACAAGGGTGTTTCGGTAT
1 TTCTACCCTACAGGGGTATTTCGGTAT
* ** *
64465219 TTCTATCCTACAGGGGTATTTCAATAA
1 TTCTACCCTACAGGGGTATTTCGGTAT
*
64465246 TTCTATCCTACAGGGGTATTTCGGTAT
1 TTCTACCCTACAGGGGTATTTCGGTAT
* *
64465273 TTTTACCCTACAAGGGTATTTCGGTAT
1 TTCTACCCTACAGGGGTATTTCGGTAT
* * *
64465300 TTCTACCCTACAAGGGTATTTCAGTAA
1 TTCTACCCTACAGGGGTATTTCGGTAT
64465327 TTCTACCCTACAGGGGTATTTCGGTAT
1 TTCTACCCTACAGGGGTATTTCGGTAT
* * *
64465354 TTCTACCCTACAAGGGTATTTCGATAA
1 TTCTACCCTACAGGGGTATTTCGGTAT
* * *
64465381 TTCTACCCTATAGGGGTATTTCAGTAA
1 TTCTACCCTACAGGGGTATTTCGGTAT
* *
64465408 TTCTACCCTACAGGGGTATTTTGATAT
1 TTCTACCCTACAGGGGTATTTCGGTAT
*
64465435 TTCTACCCTACAAGGGTATTTCGGTAT
1 TTCTACCCTACAGGGGTATTTCGGTAT
* * * *
64465462 TTCTTCCTTACAAGGGTATTTCAGTAAT
1 TTCTACCCTACAGGGGTATTTCGGT-AT
64465490 TT-TACCCTACAGGGGTATTTC
1 TTCTACCCTACAGGGGTATTTC
64465511 AATAATTTTG
Statistics
Matches: 342, Mismatches: 57, Indels: 2
0.85 0.14 0.00
Matches are distributed among these distances:
27 338 0.99
28 4 0.01
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (27 bp):
TTCTACCCTACAGGGGTATTTCGGTAT
Found at i:64465223 original size:81 final size:81
Alignment explanation
Indices: 64465080--64465510 Score: 666
Period size: 81 Copynumber: 5.3 Consensus size: 81
64465070 CGTGCGACCT
* *
64465080 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTATC
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTATC
** *
64465145 CTATGGGGGTATTTTA
66 CTACAGGGGTATTTCA
* *
64465161 GTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTACAAGGGTGTTTCGGTATTTCTATC
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTATC
64465226 CTACAGGGGTATTTCA
66 CTACAGGGGTATTTCA
* * * *
64465242 ATAATTCTATCCTACAGGGGTATTTCGGTATTTTTACCCTACAAGGGTATTTCGGTATTTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTATC
*
64465307 CTACAAGGGTATTTCA
66 CTACAGGGGTATTTCA
* * *
64465323 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTATC
*
64465388 CTATAGGGGTATTTCA
66 CTACAGGGGTATTTCA
* *
64465404 GTAATTCTACCCTACAGGGGTATTTTGATATTTCTACCCTACAAGGGTATTTCGGTATTTCT-TC
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTATC
*
64465468 CTTACAAGGGTATTTCA
66 C-TACAGGGGTATTTCA
*
64465485 GTAATTTTACCCTACAGGGGTATTTC
1 GTAATTCTACCCTACAGGGGTATTTC
64465511 AATAATTTTG
Statistics
Matches: 319, Mismatches: 30, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
80 2 0.01
81 317 0.99
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.38
Consensus pattern (81 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTATC
CTACAGGGGTATTTCA
Found at i:64465532 original size:27 final size:27
Alignment explanation
Indices: 64465474--64465973 Score: 389
Period size: 27 Copynumber: 18.7 Consensus size: 27
64465464 CTTCCTTACA
**
64465474 AGGGTATTTCAGTAATTTTAC-CCTAC-
1 AGGGTATTTCAGTAATTTTACAAAT-CG
* **
64465500 AGGGGTATTTCAATAATTTTGTAAATCG
1 A-GGGTATTTCAGTAATTTTACAAATCG
** * * *
64465528 AGGGTAAAAT-GGTAATTCTATAAATCG
1 AGGGT-ATTTCAGTAATTTTACAAATCG
* * **
64465555 GGGGTACTTTGA-TAATTTTACATGTCG
1 AGGGTA-TTTCAGTAATTTTACAAATCG
*
64465582 AGGGTATTTTAGTAA-TTTAGCAAA-CTG
1 AGGGTATTTCAGTAATTTTA-CAAATC-G
* *
64465609 AGGGTATTTCGGTAAGTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
64465636 AGGGCATTTCAGTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
64465662 ATGGTATTT-TGATAATTTTACAAATCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
*
64465689 AGGGTATTTCAGTAATTTTA-TAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
64465715 ACGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* ** * *
64465742 AGGATATTTGGGTAATTTTATAAACCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * * *
64465769 GGGGTACTTT-GGTAATTTTACAAGTCA
1 AGGGTA-TTTCAGTAATTTTACAAATCG
* *
64465796 AGGGTATTTCAATAATTTTACAAATCA
1 AGGGTATTTCAGTAATTTTACAAATCG
*
64465823 AGGGTATTTCAGTAATTTTGCAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
* *
64465850 AGGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
64465877 AGGGTATTTCAGTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
** * * * *
64465903 ACAGAATTTCGGTAATTTTATAAACCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
64465930 GGGGTACTTT-GGTAATTTTACAACT-G
1 AGGGTA-TTTCAGTAATTTTACAAATCG
* *
64465956 GGGGTATTTCAATAATTT
1 AGGGTATTTCAGTAATTT
64465974 GGTAAACTAA
Statistics
Matches: 377, Mismatches: 75, Indels: 44
0.76 0.15 0.09
Matches are distributed among these distances:
25 4 0.01
26 93 0.25
27 264 0.70
28 16 0.04
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:64465623 original size:81 final size:81
Alignment explanation
Indices: 64465538--64465973 Score: 424
Period size: 80 Copynumber: 5.4 Consensus size: 81
64465528 AGGGTAAAAT
* * * * **
64465538 GGTAATTCTATAAATCGGGGGTACTTTGA-TAATTTTACATGTCGAGGGTATTTTAGTAA-TTTA
1 GGTAATTTTACAAATCGAGGGTA-TTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTA
64465601 GCAAACTGAGGGTATTTC
65 -CAAACTGAGGGTATTTC
* * *
64465619 GGTAAGTTTACAAATCGAGGGCATTTCAGTAATTTTAC-AATCGATGGTATTTT-GATAATTTTA
1 GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTAG-TAATTTTA
64465682 CAAA-TCGAGGGTATTTC
65 CAAACT-GAGGGTATTTC
* * * * ** *
64465699 AGTAATTTTA-TAATCGACGGTATTTCAGTAATTTTACAAATCGAGGATATTTGGGTAATTTTAT
1 GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTAC
* *
64465763 AAACCGGGGGTACTTT-
66 AAACTGAGGGTA-TTTC
* * * * * *
64465779 GGTAATTTTACAAGTCAAGGGTATTTCAATAATTTTACAAATCAAGGGTATTTCAGTAATTTTGC
1 GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTAC
64465844 AAACTGAGGGTATTTC
66 AAACTGAGGGTATTTC
* ** * ** *
64465860 GGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTAC-AATCGACAGAATTTCGGTAATTTTAT
1 GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTAC
* *
64465924 AAACCGGGGGTACTTT-
66 AAACTGAGGGTA-TTTC
* * *
64465940 GGTAATTTTACAACT-GGGGGTATTTCAATAATTT
1 GGTAATTTTACAAATCGAGGGTATTTCAGTAATTT
64465974 GGTAAACTAA
Statistics
Matches: 294, Mismatches: 50, Indels: 24
0.80 0.14 0.07
Matches are distributed among these distances:
79 43 0.15
80 126 0.43
81 125 0.43
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (81 bp):
GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTAC
AAACTGAGGGTATTTC
Found at i:64465758 original size:214 final size:214
Alignment explanation
Indices: 64465503--64465925 Score: 516
Period size: 214 Copynumber: 2.0 Consensus size: 214
64465493 ACCCTACAGG
** * *
64465503 GGTATTTCAATAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGGGGGTACTTTGAT
1 GGTATTTCAATAATTTTACAAATCGAGGATAAAATGGTAATTCTATAAACCGGGGGTACTTTGAT
* * * * * *
64465568 AATTTTACATGTCGAGGGTATTTTAGTAA-TTTAGCAAA-CTGAGGGTATTTCGGTAAGTTTACA
66 AATTTTACAAGTCAAGGGTATTTCAATAATTTTA-CAAATC-AAGGGTATTTCAGTAAGTTTACA
* * **
64465631 AA-TCGAGGGCATTTCAGTAATTTTAC-AATCGATGGTATTT-TGATAATTTTACAAATCGAGGG
129 AACT-GAGGGCATTTCAGTAATTTTACAAATCGAGGGTATTTCAG-TAATTTTAC-AATCGACAG
*
64465693 TATTTCAGTAATTTTATAATCGAC
191 AATTTCAGTAATTTTATAATCGAC
* ** * *
64465717 GGTATTTCAGTAATTTTACAAATCGAGGAT-ATTTGGGTAATTTTATAAACCGGGGGTACTTTGG
1 GGTATTTCAATAATTTTACAAATCGAGGATAAAAT-GGTAATTCTATAAACCGGGGGTACTTTGA
* *
64465781 TAATTTTACAAGTCAAGGGTATTTCAATAATTTTACAAATCAAGGGTATTTCAGTAATTTTGCAA
65 TAATTTTACAAGTCAAGGGTATTTCAATAATTTTACAAATCAAGGGTATTTCAGTAAGTTTACAA
* * *
64465846 ACTGAGGGTATTTCGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAATCGACAGAATT
130 ACTGAGGGCATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGACAGAATT
*
64465911 TCGGTAATTTTATAA
195 TCAGTAATTTTATAA
64465926 ACCGGGGGTA
Statistics
Matches: 177, Mismatches: 26, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
213 2 0.01
214 147 0.83
215 27 0.15
216 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (214 bp):
GGTATTTCAATAATTTTACAAATCGAGGATAAAATGGTAATTCTATAAACCGGGGGTACTTTGAT
AATTTTACAAGTCAAGGGTATTTCAATAATTTTACAAATCAAGGGTATTTCAGTAAGTTTACAAA
CTGAGGGCATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGACAGAATTT
CAGTAATTTTATAATCGAC
Found at i:64468240 original size:158 final size:156
Alignment explanation
Indices: 64467889--64468204 Score: 436
Period size: 158 Copynumber: 2.0 Consensus size: 156
64467879 TCTTTAACTT
* * * *
64467889 AATTCAAGAATGTTTGCTATGTGTTTAATGTTCTTGTTTACAACAATGATAGCTTAATTTTATTT
1 AATTCAATAATGTTTACTATGTATTGAATGTTCTTGTTTACAACAATGATAGCTTAATTTTATTT
* * * *
64467954 AAGCTAGGATGATTATTTTGATTGAATATTATTTTTTGATTCATGCTTATAATATTTGTTCCTCA
66 AAGCTAGGATGATTATTTTGATTGAATAATATTTTTTGATTCATCCTTATAATATTTGTGCCACA
** * * *
64468019 GTCGATCATGTTTTCTTTTCTTTAACTT
131 GTCGATCATGTTTTC--TAATTAAAATC
* * * *
64468047 AATTCAATAATGTTTGCTATGTGTTTACTGTTCTTGTTTACAACAATGATAGCTTAATTTTATTT
1 AATTCAATAATGTTTACTATGTATTGAATGTTCTTGTTTACAACAATGATAGCTTAATTTTATTT
*
64468112 AAGCTAGGATGATTATTTTGATTGAATAATATTTATTTGGTTCATCCTTATAATATTTGTGCCAC
66 AAGCTAGGATGATTATTTTGATTGAATAATATTT-TTTGATTCATCCTTATAATATTTGTGCCAC
64468177 AGTCGATCATGTTTTC-AATTAAAATC
130 AGTCGATCATGTTTTCTAATTAAAATC
64468203 AA
1 AA
64468205 GTTTGTATTT
Statistics
Matches: 145, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
156 7 0.05
158 96 0.66
159 42 0.29
ACGTcount: A:0.28, C:0.11, G:0.13, T:0.47
Consensus pattern (156 bp):
AATTCAATAATGTTTACTATGTATTGAATGTTCTTGTTTACAACAATGATAGCTTAATTTTATTT
AAGCTAGGATGATTATTTTGATTGAATAATATTTTTTGATTCATCCTTATAATATTTGTGCCACA
GTCGATCATGTTTTCTAATTAAAATC
Found at i:64470459 original size:27 final size:27
Alignment explanation
Indices: 64470421--64470472 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
64470411 CATTCTACCA
*
64470421 TACACGGGTATTACAGTAATTTTACAC
1 TACAAGGGTATTACAGTAATTTTACAC
* *
64470448 TACAAGGGTATTTCGGTAATTTTAC
1 TACAAGGGTATTACAGTAATTTTAC
64470473 CAATATTGGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (27 bp):
TACAAGGGTATTACAGTAATTTTACAC
Found at i:64474099 original size:27 final size:27
Alignment explanation
Indices: 64474057--64474140 Score: 118
Period size: 27 Copynumber: 3.1 Consensus size: 27
64474047 TTGGGTTGTT
**
64474057 AATACCTCTGGGTTGT-AGAATTACCGA
1 AATACCTCTGATTTGTGA-AATTACCGA
64474084 AATACCTCTGATTTGTGAAATTACCGA
1 AATACCTCTGATTTGTGAAATTACCGA
64474111 AATACCT-TCGATTTGTGAAATTACCGA
1 AATACCTCT-GATTTGTGAAATTACCGA
64474138 AAT
1 AAT
64474141 GCCCCCGACT
Statistics
Matches: 53, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
26 1 0.02
27 51 0.96
28 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (27 bp):
AATACCTCTGATTTGTGAAATTACCGA
Found at i:64474158 original size:27 final size:27
Alignment explanation
Indices: 64474075--64474173 Score: 81
Period size: 27 Copynumber: 3.7 Consensus size: 27
64474065 TGGGTTGTAG
* * * * *
64474075 AATTACCGAAATACCTCTGATTTGTGA
1 AATTACCGAAATACCCCCGACTTATAA
** * * *
64474102 AATTACCGAAATACCTTCGATTTGTGA
1 AATTACCGAAATACCCCCGACTTATAA
*
64474129 AATTACCGAAATGCCCCCGACTTATAA
1 AATTACCGAAATACCCCCGACTTATAA
**
64474156 AATTATTGAAATACCCCC
1 AATTACCGAAATACCCCC
64474174 AGTTGGTAAA
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.29
Consensus pattern (27 bp):
AATTACCGAAATACCCCCGACTTATAA
Found at i:64481859 original size:27 final size:27
Alignment explanation
Indices: 64481829--64481907 Score: 131
Period size: 27 Copynumber: 2.9 Consensus size: 27
64481819 GAATACTTTA
*
64481829 GATTAGCCAAATTACCAAAATACCCTC
1 GATTAGCAAAATTACCAAAATACCCTC
*
64481856 GATTAGCAAAATTACTAAAATACCCTC
1 GATTAGCAAAATTACCAAAATACCCTC
*
64481883 GATTAGTAAAATTACCAAAATACCC
1 GATTAGCAAAATTACCAAAATACCC
64481908 CTAATTTGTA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.44, C:0.24, G:0.08, T:0.24
Consensus pattern (27 bp):
GATTAGCAAAATTACCAAAATACCCTC
Found at i:64481918 original size:27 final size:27
Alignment explanation
Indices: 64481837--64481934 Score: 126
Period size: 27 Copynumber: 3.6 Consensus size: 27
64481827 TAGATTAGCC
*
64481837 AAATTACCAAAATACCCTCGATTAGCA
1 AAATTACCAAAATACCCTCGATTAGTA
*
64481864 AAATTACTAAAATACCCTCGATTAGTA
1 AAATTACCAAAATACCCTCGATTAGTA
* *
64481891 AAATTACCAAAATACCC-CTAATTTGTA
1 AAATTACCAAAATACCCTC-GATTAGTA
**
64481918 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
64481935 CTGTAGGGTA
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
26 1 0.02
27 62 0.98
ACGTcount: A:0.45, C:0.22, G:0.06, T:0.27
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTAGTA
Found at i:64481949 original size:27 final size:27
Alignment explanation
Indices: 64481919--64481987 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 27
64481909 TAATTTGTAA
64481919 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
64481946 AATTGCTGAAATACCCCTGTATGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
64481973 AATTACCGAGATACC
1 AATTACTGAAATACC
64481988 TTCATGGGGT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:64482676 original size:27 final size:26
Alignment explanation
Indices: 64482632--64482683 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
64482622 CTTGCTGCAA
*
64482632 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
64482659 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
64482684 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:64482776 original size:27 final size:26
Alignment explanation
Indices: 64482724--64482783 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
64482714 ACATATATAT
*
64482724 ATATCTGTTCTGGTAACCTGGCCACA
1 ATATCTGTTCTGGTAACCTCGCCACA
* * *
64482750 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTAACCTCGCCACA
*
64482777 GTATCTG
1 ATATCTG
64482784 GCAGTCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTAACCTCGCCACA
Found at i:64485196 original size:6 final size:6
Alignment explanation
Indices: 64485185--64485291 Score: 67
Period size: 6 Copynumber: 17.0 Consensus size: 6
64485175 AATTAGGTGA
* * *
64485185 CAGAAT CAGAAT CAGTAT CAGCTAA- CAGAAT CAAAAT CAGAAT CAGTAT
1 CAGAAT CAGAAT CAGAAT CAG--AAT CAGAAT CAGAAT CAGAAT CAGAAT
* * *
64485234 CAGGTAAT -AGAAT CAAAAAT CAGAAT CAGTAT CAGGTAA- CAGAAT CAAAAGT
1 CA-G-AAT CAGAAT C-AGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAA-T
64485286 CAGAAT
1 CAGAAT
64485292 ATGAATGCAA
Statistics
Matches: 78, Mismatches: 12, Indels: 22
0.70 0.11 0.20
Matches are distributed among these distances:
5 7 0.09
6 49 0.63
7 18 0.23
8 4 0.05
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.20
Consensus pattern (6 bp):
CAGAAT
Found at i:64485258 original size:32 final size:32
Alignment explanation
Indices: 64485188--64485291 Score: 174
Period size: 32 Copynumber: 3.3 Consensus size: 32
64485178 TAGGTGACAG
*
64485188 AATCAGAATCAGTATCAGCTAACAGAATC-AA
1 AATCAGAATCAGTATCAGGTAACAGAATCAAA
*
64485219 AATCAGAATCAGTATCAGGTAATAGAATCAAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAAA
64485251 AATCAGAATCAGTATCAGGTAACAGAATCAAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAAA
*
64485283 AGTCAGAAT
1 AATCAGAAT
64485292 ATGAATGCAA
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
31 27 0.40
32 41 0.60
ACGTcount: A:0.49, C:0.15, G:0.15, T:0.20
Consensus pattern (32 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAAA
Found at i:64485479 original size:27 final size:26
Alignment explanation
Indices: 64485428--64485529 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 26
64485418 GCTCAGTTAT
* *
64485428 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
* *
64485455 CAGATATTGTGGCAGCGCCATCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
64485481 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* * *
64485509 CAGGTAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
64485530 TTAACAGAAT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 7 0.11
27 49 0.78
28 7 0.11
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:64485716 original size:22 final size:23
Alignment explanation
Indices: 64485688--64485749 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 23
64485678 GCAAATACGT
*
64485688 TTGGCACACAGCCATAAT-CAGG
1 TTGGCACAAAGCCATAATGCAGG
* *
64485710 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAATGCAGG
*
64485732 TTGACACAAAGCCATAAT
1 TTGGCACAAAGCCATAAT
64485750 AAGAAGGCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.21
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATGCAGG
Found at i:64486033 original size:16 final size:16
Alignment explanation
Indices: 64486008--64486038 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
64485998 ATCCCAACCC
64486008 ATGCAACATGTCATGT
1 ATGCAACATGTCATGT
*
64486024 ATGCAGCATGTCATG
1 ATGCAACATGTCATG
64486039 CCCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (16 bp):
ATGCAACATGTCATGT
Found at i:64486236 original size:27 final size:27
Alignment explanation
Indices: 64486179--64486621 Score: 525
Period size: 27 Copynumber: 16.3 Consensus size: 27
64486169 GGGGCAAAAT
* * * *
64486179 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
64486205 GGTAATTCCACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
64486232 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
64486259 GGTAATTCTATCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
64486286 -ATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
64486312 GATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
64486339 GGTAATTCTACCCTACTGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
64486366 AGTAATTCTACCCTACTGGGGTATTAT-
1 GGTAATTCTACCCTACAGGGGTATT-TC
64486393 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
64486420 GATAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
64486447 GGTAATTCTACCCTATAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
64486473 AGATAATTCTACCCTATAGGGGTATTCC
1 -GGTAATTCTACCCTACAGGGGTATTTC
* *
64486501 GGTAATTCTACCTTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
64486528 GGTAATTCTACCCTACAGAGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
64486555 AGTAATTCTACCCTACAAGGGTAGGGGTATTTC
1 GGTAATTCTACCCTAC------AGGGGTATTTC
*
64486588 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
64486615 GATAATT
1 GGTAATT
64486622 TTATAAATCG
Statistics
Matches: 365, Mismatches: 40, Indels: 23
0.85 0.09 0.05
Matches are distributed among these distances:
26 40 0.11
27 299 0.82
28 3 0.01
33 23 0.06
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:64486636 original size:27 final size:27
Alignment explanation
Indices: 64486579--64486892 Score: 129
Period size: 27 Copynumber: 11.6 Consensus size: 27
64486569 ACAAGGGTAG
* ** *
64486579 GGGTATTTCGATAATTCTAC-CCTACAG
1 GGGTATTTCGATAATTTTACAAAT-CAA
* *
64486606 GGGTATTTCGATAATTTTATAAATCGA
1 GGGTATTTCGATAATTTTACAAATCAA
*** * **
64486633 GGGTAAAAC-AGTAATTCTGTAAATCAA
1 GGGTATTTCGA-TAATTTTACAAATCAA
* * *
64486660 GGGTACTTT-GGTAATTTTACAAGTCGA
1 GGGTA-TTTCGATAATTTTACAAATCAA
* * ** *
64486687 GGGTATTTCAACAATTTTACAGGTCCA
1 GGGTATTTCGATAATTTTACAAATCAA
* * *
64486714 GGGTATTTC-AGTAATTTCATAAATCAG
1 GGGTATTTCGA-TAATTTTACAAATCAA
* * *
64486741 GGGTATTTTGGTAATTTTACAAA-CTAG
1 GGGTATTTCGATAATTTTACAAATC-AA
* * *
64486768 GGGTATTTTGGTAATTTTACAAA-CTAG
1 GGGTATTTCGATAATTTTACAAATC-AA
* * *
64486795 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTCGATAATTTTACAAATCAA
* * * * *
64486822 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTCGATAATTTTACAAATCAA
* * * *
64486849 GGGTATTT-TAGTGATTTTACAAACCAG
1 GGGTATTTCGA-TAATTTTACAAATCAA
* *
64486876 GGGTATTTTGGTAATTT
1 GGGTATTTCGATAATTT
64486893 GGTAAACTAA
Statistics
Matches: 227, Mismatches: 49, Indels: 22
0.76 0.16 0.07
Matches are distributed among these distances:
26 6 0.03
27 219 0.96
28 2 0.01
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAAATCAA
Found at i:64486703 original size:81 final size:81
Alignment explanation
Indices: 64486606--64486762 Score: 190
Period size: 81 Copynumber: 1.9 Consensus size: 81
64486596 TACCCTACAG
* * * * *
64486606 GGGTATTTCGATAATTTTATAAATCGAGGGTAAAACAGTAA-TTCTGTAAATCAAGGGTACTTTG
1 GGGTATTTCAACAATTTTACAAATCCAGGGTAAAACAGTAATTTC-ATAAATCAAGGGTACTTTG
64486670 GTAATTTTACAAGTCGA
65 GTAATTTTACAAGTCGA
** *** * *
64486687 GGGTATTTCAACAATTTTACAGGTCCAGGGTATTTCAGTAATTTCATAAATCAGGGGTATTTTGG
1 GGGTATTTCAACAATTTTACAAATCCAGGGTAAAACAGTAATTTCATAAATCAAGGGTACTTTGG
64486752 TAATTTTACAA
66 TAATTTTACAA
64486763 ACTAGGGGTA
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
81 60 0.95
82 3 0.05
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.36
Consensus pattern (81 bp):
GGGTATTTCAACAATTTTACAAATCCAGGGTAAAACAGTAATTTCATAAATCAAGGGTACTTTGG
TAATTTTACAAGTCGA
Found at i:64486784 original size:81 final size:81
Alignment explanation
Indices: 64486652--64486892 Score: 236
Period size: 81 Copynumber: 3.0 Consensus size: 81
64486642 AGTAATTCTG
* * * * * ** **
64486652 TAAATCAAGGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAACAATTTTACAGGTCCA-G
1 TAAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTAGTAATTTTACA-AACCAGG
64486715 GGTATTTCAG-TAATTTCA
64 GGTATTT-AGATAATTTCA
* *
64486733 TAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGG
1 TAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACCAGGGG
* *
64486798 TATTTTGATAATTTTA
66 TATTTAGATAATTTCA
* * * * * * *
64486814 CAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTGATTTTACAAACCAGGGG
1 TAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACCAGGGG
* *
64486879 TATTTTGGTAATTT
66 TATTTAGATAATTT
64486893 GGTAAACTAA
Statistics
Matches: 134, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
80 3 0.02
81 127 0.95
82 4 0.03
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (81 bp):
TAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACCAGGGG
TATTTAGATAATTTCA
Found at i:64486899 original size:27 final size:27
Alignment explanation
Indices: 64486714--64486892 Score: 241
Period size: 27 Copynumber: 6.6 Consensus size: 27
64486704 TACAGGTCCA
** * * *
64486714 GGGTATTTCAGTAATTTCATAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
64486741 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
64486768 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
64486795 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
64486822 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
64486849 GGGTATTTTAGTGATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
64486876 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
64486893 GGTAAACTAA
Statistics
Matches: 135, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 135 1.00
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:64493703 original size:28 final size:26
Alignment explanation
Indices: 64493672--64493795 Score: 106
Period size: 28 Copynumber: 4.5 Consensus size: 26
64493662 TTAGGCATTG
*
64493672 AAATATTCTTAATAATAATTTTATATTA
1 AAATATTATTAATAATAA--TTATATTA
*
64493700 AAATATTCTTAATAATAATTATATTA
1 AAATATTATTAATAATAATTATATTA
* * *
64493726 AGAATGTTATTAAATTATATATTATTTTA
1 A-AATATTATT-AATAATA-ATTATATTA
*
64493755 TTAAAT-TGTATTTAATAATAATTATGTTA
1 --AAATAT-TA-TTAATAATAATTATATTA
64493784 AAATATTATTAA
1 AAATATTATTAA
64493796 ATTATTTATT
Statistics
Matches: 82, Mismatches: 6, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
26 13 0.16
27 13 0.16
28 25 0.30
29 17 0.21
30 11 0.13
31 3 0.04
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (26 bp):
AAATATTATTAATAATAATTATATTA
Found at i:64493759 original size:58 final size:57
Alignment explanation
Indices: 64493695--64493805 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 57
64493685 AATAATTTTA
*
64493695 TATTAAAATAT-TCTTAATAATAATTATATTAAGAATGTTATTAAATTATATATTATTT
1 TATTAAAATATAT-TTAATAATAATTATATTAA-AATATTATTAAATTATATATTATTT
* * * *
64493753 TATTAAATTGTATTTAATAATAATTATGTTAAAATATTATTAAATTATTTATT
1 TATTAAAATATATTTAATAATAATTATATTAAAATATTATTAAATTATATATT
64493806 TTTATTTTTA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
57 19 0.40
58 27 0.57
59 1 0.02
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (57 bp):
TATTAAAATATATTTAATAATAATTATATTAAAATATTATTAAATTATATATTATTT
Found at i:64494011 original size:44 final size:46
Alignment explanation
Indices: 64493942--64494034 Score: 120
Period size: 44 Copynumber: 2.1 Consensus size: 46
64493932 TACAACATCT
*
64493942 ATTCCATTCAACCAAACACAAGAATT-C-AATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACACAAGAATTACTAATTACAGCGCTATTCC
* * *
64493986 ATTCCATTCAACCAAACA-ATTGAATTACTGATTATAGCGCTATTCC
1 ATTCCATTCAACCAAACACA-AGAATTACTAATTACAGCGCTATTCC
64494032 ATT
1 ATT
64494035 ACAACTCTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 23 0.55
45 1 0.02
46 17 0.40
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (46 bp):
ATTCCATTCAACCAAACACAAGAATTACTAATTACAGCGCTATTCC
Found at i:64494044 original size:16 final size:16
Alignment explanation
Indices: 64494025--64494086 Score: 88
Period size: 16 Copynumber: 3.9 Consensus size: 16
64494015 GATTATAGCG
*
64494025 CTATTCCATTACAACT
1 CTATTCCATTACAGCT
64494041 CTATTCCATTACAGCT
1 CTATTCCATTACAGCT
* * *
64494057 CTCTTCAATTACAGCC
1 CTATTCCATTACAGCT
64494073 CTATTCCATTACAG
1 CTATTCCATTACAG
64494087 TGAACCAAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 40 1.00
ACGTcount: A:0.27, C:0.32, G:0.05, T:0.35
Consensus pattern (16 bp):
CTATTCCATTACAGCT
Found at i:64500865 original size:39 final size:39
Alignment explanation
Indices: 64500811--64500897 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
64500801 CTGGCAATTA
*
64500811 GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
1 GCCTGCTAGGTATAAACCTAAACTTATCACCGGCACGAG
*
64500850 GCCTGCTAGGTATAAACCTAAATTTATCACCGGCACGAG
1 GCCTGCTAGGTATAAACCTAAACTTATCACCGGCACGAG
64500889 GCCTGCTAG
1 GCCTGCTAG
64500898 ACATTAAGTC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.22
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCTAAACTTATCACCGGCACGAG
Found at i:64504164 original size:42 final size:43
Alignment explanation
Indices: 64504069--64504212 Score: 159
Period size: 42 Copynumber: 3.3 Consensus size: 43
64504059 CCAACATCTT
* *
64504069 AGACATGGTCTTACATGTAAA-CAAATATTGATGCCATTGTCCC
1 AGACATGGTCTTACATGTAAATCAAATA-CGATGCCAATGTCCC
*
64504112 AGACAGGGTCTTACATG-AAATCAAATACGATGCCAATGTCCC
1 AGACATGGTCTTACATGTAAATCAAATACGATGCCAATGTCCC
* * * *
64504154 AAACATGGTCTTACAAGTAAATCATCAGT-CGATGCTAATGTCCC
1 AGACATGGTCTTACATGTAAATCA--AATACGATGCCAATGTCCC
**
64504198 AGATGTGGTCTTACA
1 AGACATGGTCTTACA
64504213 CGATAACACA
Statistics
Matches: 86, Mismatches: 11, Indels: 7
0.83 0.11 0.07
Matches are distributed among these distances:
42 30 0.35
43 28 0.33
44 26 0.30
45 2 0.02
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (43 bp):
AGACATGGTCTTACATGTAAATCAAATACGATGCCAATGTCCC
Found at i:64517075 original size:81 final size:81
Alignment explanation
Indices: 64516904--64517158 Score: 345
Period size: 80 Copynumber: 3.2 Consensus size: 81
64516894 ATACCCCTGG
* *
64516904 TTTGTAAAATTA-CCAAAGTACCCCCGGTTTATAAAATTACTGAAATACCGTCGATTGTAAAATT
1 TTTGTAAAATTATCCAAAGTACCCCCAGTTTAGAAAATTACTGAAATACCGTCGATTGTAAAATT
64516968 ACTGAAATACCCTCAA
66 ACTGAAATACCCTCAA
** * * * * *
64516984 TTTGTAAAATTATTGAAA-TACCCTCAGTTTGGAAAATTACTGAAATACCATTGATTTGCAAAAT
1 TTTGTAAAATTATCCAAAGTACCCCCAGTTTAGAAAATTACTGAAATACCGTCGA-TTGTAAAAT
*
64517048 TACTGAAATACCCTCGA
65 TACTGAAATACCCTCAA
* * * *
64517065 CTTGTAAAATT-TCCAAAGTACCCCCGGTTTATAAAATTACCGAAATACCGTCGATTGTAAAATT
1 TTTGTAAAATTATCCAAAGTACCCCCAGTTTAGAAAATTACTGAAATACCGTCGATTGTAAAATT
*
64517129 ACTGAAATACCCTTAA
66 ACTGAAATACCCTCAA
64517145 TTTGTAAAATTATC
1 TTTGTAAAATTATC
64517159 AAAACACCCT
Statistics
Matches: 147, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
80 79 0.54
81 68 0.46
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.32
Consensus pattern (81 bp):
TTTGTAAAATTATCCAAAGTACCCCCAGTTTAGAAAATTACTGAAATACCGTCGATTGTAAAATT
ACTGAAATACCCTCAA
Found at i:64517156 original size:27 final size:27
Alignment explanation
Indices: 64516904--64517156 Score: 255
Period size: 27 Copynumber: 9.4 Consensus size: 27
64516894 ATACCCCTGG
* * *
64516904 TTTGTAAAATTAC-CAAAGTACCCCCGG
1 TTTGTAAAATTACTGAAA-TACCCTCGA
* *
64516931 TTTATAAAATTACTGAAATACCGTCGA
1 TTTGTAAAATTACTGAAATACCCTCGA
*
64516958 -TTGTAAAATTACTGAAATACCCTCAA
1 TTTGTAAAATTACTGAAATACCCTCGA
*
64516984 TTTGTAAAATTATTGAAATACCCTC-A
1 TTTGTAAAATTACTGAAATACCCTCGA
* * *
64517010 GTTTGGAAAATTACTGAAATACCATTGA
1 -TTTGTAAAATTACTGAAATACCCTCGA
*
64517038 TTTGCAAAATTACTGAAATACCCTCGA
1 TTTGTAAAATTACTGAAATACCCTCGA
* * * * *
64517065 CTTGTAAAATTTC-CAAAGTACCCCCGG
1 TTTGTAAAATTACTGAAA-TACCCTCGA
* * *
64517092 TTTATAAAATTACCGAAATACCGTCGA
1 TTTGTAAAATTACTGAAATACCCTCGA
**
64517119 -TTGTAAAATTACTGAAATACCCTTAA
1 TTTGTAAAATTACTGAAATACCCTCGA
64517145 TTTGTAAAATTA
1 TTTGTAAAATTA
64517157 TCAAAACACC
Statistics
Matches: 185, Mismatches: 34, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
26 48 0.26
27 130 0.70
28 7 0.04
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.32
Consensus pattern (27 bp):
TTTGTAAAATTACTGAAATACCCTCGA
Found at i:64517188 original size:27 final size:27
Alignment explanation
Indices: 64517164--64517401 Score: 278
Period size: 27 Copynumber: 8.8 Consensus size: 27
64517154 TTATCAAAAC
* * *
64517164 ACCCTTGTAGGGTAGAAATACCAAAAT
1 ACCCCTGTAGGGTAGAATTACCGAAAT
* *
64517191 ACCCCTGTAAGGTAGAATTACTGAAAT
1 ACCCCTGTAGGGTAGAATTACCGAAAT
* *
64517218 AGCCCTGTAGGGTAGAATTACTGAAAT
1 ACCCCTGTAGGGTAGAATTACCGAAAT
*
64517245 ACCCCTGTAGGGTAGAATTATCGAAAT
1 ACCCCTGTAGGGTAGAATTACCGAAAT
* *
64517272 ACCCCTATAGGGTAGAATTACTGAAAT
1 ACCCCTGTAGGGTAGAATTACCGAAAT
* * *
64517299 ACCACTGAAGGGTAGAATTACTGAAAT
1 ACCCCTGTAGGGTAGAATTACCGAAAT
** * **
64517326 ACCATTGTAGGGTAGAAATACTAAAAT
1 ACCCCTGTAGGGTAGAATTACCGAAAT
*
64517353 ACCCCTGTAGGGTAGAATTACCGAGAT
1 ACCCCTGTAGGGTAGAATTACCGAAAT
* * *
64517380 ACCCTTGTGGGGTAAAATTACC
1 ACCCCTGTAGGGTAGAATTACC
64517402 ATGTTGCCCC
Statistics
Matches: 182, Mismatches: 29, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 182 1.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
ACCCCTGTAGGGTAGAATTACCGAAAT
Found at i:64517212 original size:161 final size:162
Alignment explanation
Indices: 64516905--64517223 Score: 430
Period size: 161 Copynumber: 2.0 Consensus size: 162
64516895 TACCCCTGGT
*
64516905 TTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACTGAAATACCGTCGATTGTAAAATTAC
1 TTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCGAAATACCGTCGATTGTAAAATTAC
** * ** ** *
64516970 TGAAATACCCTCAATTTGTAAAATTATTGAAATACCCTCAGTTTGGAAAATTACTGAAATACCAT
66 TGAAATACCCTCAATTTGTAAAATTATCAAAACACCCTCAGTAGGGAAAATTACCAAAATACCAC
**
64517035 TGATTTGCAAAATTACTGAAATA-CCCTCGAC
131 TGATAGGCAAAATTACTGAAATAGCCCTCGAC
*
64517066 TTGTAAAATTTCCAAAGTACCCCCGGTTTATAAAATTACCGAAATACCGTCGATTGTAAAATTAC
1 TTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCGAAATACCGTCGATTGTAAAATTAC
* *
64517131 TGAAATACCCTTAATTTGTAAAATTATCAAAACACCCT-TGTAGGGTAGAAA-TACCAAAATACC
66 TGAAATACCCTCAATTTGTAAAATTATCAAAACACCCTCAGTAGGG-A-AAATTACCAAAATACC
* * *
64517194 CCTG-TAAGGTAGAATTACTGAAATAGCCCT
129 ACTGAT-AGGCAAAATTACTGAAATAGCCCT
64517224 GTAGGGTAGA
Statistics
Matches: 137, Mismatches: 17, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
160 5 0.04
161 125 0.91
162 7 0.05
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.30
Consensus pattern (162 bp):
TTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCGAAATACCGTCGATTGTAAAATTAC
TGAAATACCCTCAATTTGTAAAATTATCAAAACACCCTCAGTAGGGAAAATTACCAAAATACCAC
TGATAGGCAAAATTACTGAAATAGCCCTCGAC
Found at i:64517260 original size:81 final size:80
Alignment explanation
Indices: 64517164--64517400 Score: 330
Period size: 81 Copynumber: 2.9 Consensus size: 80
64517154 TTATCAAAAC
*
64517164 ACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAAGGTAGAATTACTGAAATAGCCCTGTAGG
1 ACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTACTGAAATA-CCCTGTAGG
64517229 GTAGAATTACTGAAAT
65 GTAGAATTACTGAAAT
* * * * * *
64517245 ACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAATTACTGAAATACCACTGAAGG
1 ACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTACTGAAATACC-CTGTAGG
64517310 GTAGAATTACTGAAAT
65 GTAGAATTACTGAAAT
* * * * *
64517326 ACCATTGTAGGGTAGAAATACTAAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGG
1 ACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCC-TGTAGG
*
64517391 GTAAAATTAC
65 GTAGAATTAC
64517401 CATGTTGCCC
Statistics
Matches: 135, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
80 3 0.02
81 132 0.98
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (80 bp):
ACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTGTAGGG
TAGAATTACTGAAAT
Found at i:64518098 original size:27 final size:26
Alignment explanation
Indices: 64518054--64518104 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
64518044 CTCGCTGCAA
*
64518054 TCTGGTGGCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
64518081 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
64518105 GGCAGCCTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Done.