Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 201 of 333
Found at i:65880771 original size:39 final size:40
Alignment explanation
Indices: 65880517--65880779 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
65880507 TTGAATGCTG
* * * * * *
65880517 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
65880557 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
65880597 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
65880637 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
65880677 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * * *
65880717 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTCACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
65880756 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
65880780 TGAACGAGGA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 34 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:65882259 original size:45 final size:44
Alignment explanation
Indices: 65882175--65882278 Score: 127
Period size: 45 Copynumber: 2.3 Consensus size: 44
65882165 ACTATCTAAG
* *
65882175 TGCAAGCCAAAGTTGGTGCAAGCCAAAGTGACGGGTAGTCAAAA
1 TGCAAGCCAAAGTGGGTGCAAGCCAAAGTGACGGATAGTCAAAA
* ** * *
65882219 TGCAAGCCAAAAGTGGGTGTAAGCCAAAGTGGTGGATAGTCCAAG
1 TGCAAGCC-AAAGTGGGTGCAAGCCAAAGTGACGGATAGTCAAAA
*
65882264 TTCAAGCCAAAGTGG
1 TGCAAGCCAAAGTGG
65882279 CAGACAGTCC
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
44 15 0.29
45 36 0.71
ACGTcount: A:0.35, C:0.17, G:0.31, T:0.17
Consensus pattern (44 bp):
TGCAAGCCAAAGTGGGTGCAAGCCAAAGTGACGGATAGTCAAAA
Found at i:65882271 original size:28 final size:28
Alignment explanation
Indices: 65882239--65882321 Score: 112
Period size: 28 Copynumber: 3.0 Consensus size: 28
65882229 AAGTGGGTGT
* *
65882239 AAGCCAAAGTGGTGGATAGTCCAAGTTC
1 AAGCCAAAGTGGTGGACAGTCCAAGTGC
**
65882267 AAGCCAAAGTGGCAGACAGTCCAAGTGC
1 AAGCCAAAGTGGTGGACAGTCCAAGTGC
* *
65882295 AAGCCAAAATGATGGACAGTCCAAGTG
1 AAGCCAAAGTGGTGGACAGTCCAAGTG
65882322 TAAGACACTC
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.36, C:0.20, G:0.28, T:0.16
Consensus pattern (28 bp):
AAGCCAAAGTGGTGGACAGTCCAAGTGC
Found at i:65883350 original size:19 final size:19
Alignment explanation
Indices: 65883305--65883349 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
65883295 TGTAAAATTC
*
65883305 TATA-TTTTAAATTTATTA
1 TATATTTTTAAATATATTA
65883323 TATATTTTTAAATAT-TTA
1 TATATTTTTAAATATATTA
*
65883341 TGTATTTTT
1 TATATTTTT
65883350 TTTAGAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 15 0.62
19 9 0.38
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
TATATTTTTAAATATATTA
Found at i:65891113 original size:40 final size:40
Alignment explanation
Indices: 65891059--65891153 Score: 129
Period size: 40 Copynumber: 2.3 Consensus size: 40
65891049 GTAAAAATTA
* *
65891059 TAAAACACGGAGCAATAGCGGCG-TTTTATTAAAAACGCCGC
1 TAAAA-ACAGAGCAATAGCGGCGCTTTTAGT-AAAACGCCGC
*
65891100 TAAAAACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCGCTTTTAGTAAAACGCCGC
65891140 TAAAAACCAGAGCA
1 TAAAAA-CAGAGCA
65891154 TTAGAAACTA
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
40 32 0.65
41 17 0.35
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.17
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGCTTTTAGTAAAACGCCGC
Found at i:65892384 original size:14 final size:15
Alignment explanation
Indices: 65892355--65892385 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
65892345 CTAATTTTTC
65892355 CCCCAAATCGAAAAT
1 CCCCAAATCGAAAAT
65892370 CCCCAAATC-AAAAT
1 CCCCAAATCGAAAAT
65892384 CC
1 CC
65892386 TTCCACCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.45, C:0.39, G:0.03, T:0.13
Consensus pattern (15 bp):
CCCCAAATCGAAAAT
Found at i:65892472 original size:14 final size:14
Alignment explanation
Indices: 65892453--65892499 Score: 85
Period size: 14 Copynumber: 3.4 Consensus size: 14
65892443 ATTTCTTGCT
65892453 TCTCTAAATCTCCA
1 TCTCTAAATCTCCA
65892467 TCTCTAAATCTCCA
1 TCTCTAAATCTCCA
*
65892481 TCTCTAAATCTCTA
1 TCTCTAAATCTCCA
65892495 TCTCT
1 TCTCT
65892500 TTGATTTTCG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.26, C:0.34, G:0.00, T:0.40
Consensus pattern (14 bp):
TCTCTAAATCTCCA
Found at i:65896805 original size:43 final size:43
Alignment explanation
Indices: 65896756--65896841 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
65896746 GGTTATATTT
** * *
65896756 TTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCCTGGTC
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
65896799 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
65896842 GCCGCAAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.27
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
Found at i:65898170 original size:12 final size:12
Alignment explanation
Indices: 65898153--65898262 Score: 51
Period size: 12 Copynumber: 8.0 Consensus size: 12
65898143 GACTGTTCGC
65898153 CACTTTGGATTG
1 CACTTTGGATTG
65898165 CACTTTGGATTG
1 CACTTTGGATTG
65898177 TCTATCATTTTGGATTG
1 -C-A-C--TTTGGATTG
65898194 CAC-TTGGACTGCCTG
1 CACTTTGGA-T---TG
* *
65898209 TCATTTTGGCTTG
1 -CACTTTGGATTG
65898222 CACTTTGGACTGTCCG
1 CACTTTGGA-T-T--G
*
65898238 CCACTTTGGCTTG
1 -CACTTTGGATTG
65898251 CACTTTGGATTG
1 CACTTTGGATTG
65898263 TCTGTCACTT
Statistics
Matches: 76, Mismatches: 6, Indels: 32
0.67 0.05 0.28
Matches are distributed among these distances:
11 5 0.07
12 31 0.41
13 5 0.07
14 3 0.04
15 5 0.07
16 6 0.08
17 21 0.28
ACGTcount: A:0.14, C:0.22, G:0.24, T:0.41
Consensus pattern (12 bp):
CACTTTGGATTG
Found at i:65898188 original size:29 final size:29
Alignment explanation
Indices: 65898071--65898275 Score: 222
Period size: 28 Copynumber: 7.2 Consensus size: 29
65898061 CAATTTGCCT
* *
65898071 TTTTGGCTTGCA-TTTGGACTGTTTATCA
1 TTTTGGCTTGCACTTTGGACTGTCTGTCA
* *
65898099 TTTTGGCTTGCA-TTTGGACTGTTTATCA
1 TTTTGGCTTGCACTTTGGACTGTCTGTCA
*
65898127 TTTTGGCTTGCA-TTTGGACTGT-TCGCCA
1 TTTTGGCTTGCACTTTGGACTGTCT-GTCA
* * * *
65898155 CTTTGGATTGCACTTTGGATTGTCTATCA
1 TTTTGGCTTGCACTTTGGACTGTCTGTCA
* *
65898184 TTTTGGATTGCAC-TTGGACTGCCTGTCA
1 TTTTGGCTTGCACTTTGGACTGTCTGTCA
* *
65898212 TTTTGGCTTGCACTTTGGACTGTCCGCCA
1 TTTTGGCTTGCACTTTGGACTGTCTGTCA
* *
65898241 CTTTGGCTTGCACTTTGGATTGTCTGTCA
1 TTTTGGCTTGCACTTTGGACTGTCTGTCA
65898270 CTTTTG
1 -TTTTG
65898276 CATGATTGGC
Statistics
Matches: 152, Mismatches: 20, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
27 1 0.01
28 86 0.57
29 60 0.39
30 5 0.03
ACGTcount: A:0.13, C:0.20, G:0.23, T:0.45
Consensus pattern (29 bp):
TTTTGGCTTGCACTTTGGACTGTCTGTCA
Found at i:65898201 original size:57 final size:57
Alignment explanation
Indices: 65898071--65898259 Score: 220
Period size: 57 Copynumber: 3.3 Consensus size: 57
65898061 CAATTTGCCT
** *
65898071 TTTTGGCTTGCATTTGGACTGTTTATCATTTTGGCTTGCA-TTTGGACTGTTTATCA
1 TTTTGGCTTGCATTTGGACTGTTCGTCATTTTGGCTTGCACTTTGGACTGTCTATCA
* * * *
65898127 TTTTGGCTTGCATTTGGACTGTTCGCCACTTTGGATTGCACTTTGGATTGTCTATCA
1 TTTTGGCTTGCATTTGGACTGTTCGTCATTTTGGCTTGCACTTTGGACTGTCTATCA
* * * ***
65898184 TTTTGGATTGCACTTGGACTG-CCTGTCATTTTGGCTTGCACTTTGGACTGTCCGCCA
1 TTTTGGCTTGCATTTGGACTGTTC-GTCATTTTGGCTTGCACTTTGGACTGTCTATCA
*
65898241 CTTTGGCTTGCACTTTGGA
1 TTTTGGCTTGCA-TTTGGA
65898260 TTGTCTGTCA
Statistics
Matches: 110, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
56 36 0.33
57 69 0.63
58 5 0.05
ACGTcount: A:0.13, C:0.20, G:0.23, T:0.44
Consensus pattern (57 bp):
TTTTGGCTTGCATTTGGACTGTTCGTCATTTTGGCTTGCACTTTGGACTGTCTATCA
Found at i:65900416 original size:16 final size:16
Alignment explanation
Indices: 65900394--65900461 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
65900384 TTTGGTTCGC
*
65900394 TGTATTGGATTAGACG
1 TGTATTGGATTAGAGG
* *
65900410 CGTATTGGATTAAAGG
1 TGTATTGGATTAGAGG
65900426 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
65900442 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
65900458 TGTA
1 TGTA
65900462 ATAGCAAATC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.26, C:0.03, G:0.34, T:0.37
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:65900718 original size:18 final size:17
Alignment explanation
Indices: 65900697--65900731 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
65900687 TTATTATTAA
*
65900697 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
65900715 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
65900732 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:65900785 original size:157 final size:156
Alignment explanation
Indices: 65900591--65900899 Score: 564
Period size: 157 Copynumber: 2.0 Consensus size: 156
65900581 CCCTTAACAT
* *
65900591 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATTAA
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
65900656 TAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAA
65900721 TTTAATAAAATTCTTAATAATTAGCAG
131 -TTAATAAAATTCTTAATAATTAGCAG
*
65900748 AAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
65900813 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAA
65900878 TTAATAAAATTCTTAATAATTA
131 TTAATAAAATTCTTAATAATTA
65900900 ATATTCTTAT
Statistics
Matches: 147, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
156 22 0.15
157 125 0.85
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.48
Consensus pattern (156 bp):
AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAA
TTAATAAAATTCTTAATAATTAGCAG
Found at i:65900871 original size:16 final size:16
Alignment explanation
Indices: 65900834--65900875 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
65900824 TTAATCATAT
*
65900834 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
65900850 TT-AAATATATTATAA
1 TTAAAATATATTATAA
65900865 TTAAAATATAT
1 TTAAAATATAT
65900876 AATTAATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:65900878 original size:13 final size:15
Alignment explanation
Indices: 65900843--65900881 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
65900833 TTTAAACATA
*
65900843 ATTATTATTAAATAT
1 ATTATAATTAAATAT
65900858 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
65900872 A-TATAATTAA
1 ATTATAATTAA
65900882 TAAAATTCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.39
14 3 0.13
15 11 0.48
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:65901001 original size:14 final size:15
Alignment explanation
Indices: 65900952--65901003 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
65900942 ATAAAATATA
65900952 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
65900967 TATTAAATATATTAT
1 AATTAAATATATTAT
65900982 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
65900995 AATTTAATA
1 AATTAAATA
65901004 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:65901049 original size:120 final size:120
Alignment explanation
Indices: 65900837--65901350 Score: 919
Period size: 120 Copynumber: 4.3 Consensus size: 120
65900827 ATCATATTTA
65900837 AACATAATTATTATTAAATATATTATAATTAAAATATATAA-TTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
65900901 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
65900956 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
65901021 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
65901076 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* * *
65901141 TATTCTTATATGAATTTACTCTAATAATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
65901196 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
65901261 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTAT-AAATGA-AAATTT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAT-ATAAA-TT
* *
65901316 GAA-ATAATTAATATTAAATATATTTTAATTAAAAT
1 -AACATAATTATTATTAAATATATTATAATTAAAAT
65901351 TTATTGTTTA
Statistics
Matches: 383, Mismatches: 8, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
119 48 0.13
120 333 0.87
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:65901121 original size:14 final size:15
Alignment explanation
Indices: 65901072--65901243 Score: 60
Period size: 15 Copynumber: 11.6 Consensus size: 15
65901062 GTAAAATATA
65901072 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
65901087 TATTAAATATATTAT
1 AATTAAATATATTAT
*
65901102 AATTAAAATATATAATTT
1 AATT-AAATATAT--TAT
* *
65901120 AATAAAAT-TCTTAAT
1 AATTAAATATATT-AT
*
65901135 AATT-AATATTCTTAT
1 AATTAAATA-TATTAT
* * * *
65901150 -A-TGAATTTACTCT
1 AATTAAATATATTAT
* *
65901163 AATAATAATATATGAT
1 AATTA-AATATATTAT
*
65901179 ACTGTAAA-ATA-TA-
1 AAT-TAAATATATTAT
65901192 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
65901207 TATTAAATATATTAT
1 AATTAAATATATTAT
65901222 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
65901235 AATTTAATA
1 AATTAAATA
65901244 AAATTCTTAA
Statistics
Matches: 115, Mismatches: 24, Indels: 37
0.65 0.14 0.21
Matches are distributed among these distances:
12 3 0.03
13 17 0.15
14 23 0.20
15 38 0.33
16 24 0.21
17 5 0.04
18 5 0.04
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:65913041 original size:7 final size:7
Alignment explanation
Indices: 65913029--65913056 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
65913019 AAAGAAAAAG
65913029 AACAAAC
1 AACAAAC
65913036 AACAAAC
1 AACAAAC
65913043 AACAAAC
1 AACAAAC
65913050 AACAAAC
1 AACAAAC
65913057 GAAACAGAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.71, C:0.29, G:0.00, T:0.00
Consensus pattern (7 bp):
AACAAAC
Found at i:65916490 original size:89 final size:89
Alignment explanation
Indices: 65916341--65916505 Score: 285
Period size: 89 Copynumber: 1.9 Consensus size: 89
65916331 TTAAAAACTA
* * * *
65916341 GTGGTGGAGGAGGTGTAAAGTTGGTTGAAGACATTTTTACAAAAAAACAACAAGGAAACATATGT
1 GTGGTGAAAGAGGTGTAAAGCTGGCTGAAGACATTTTTACAAAAAAACAACAAGGAAACATATGT
65916406 TTTTTCTTTTAGGAAACAGAATTG
66 TTTTTCTTTTAGGAAACAGAATTG
*
65916430 GTGGTGAAAGAGGTGTAAAGCTGGCTGAAGACATTTTTACAAAAAAACAATAAGGAAACATATGT
1 GTGGTGAAAGAGGTGTAAAGCTGGCTGAAGACATTTTTACAAAAAAACAACAAGGAAACATATGT
65916495 TTTTTCTTTTA
66 TTTTTCTTTTA
65916506 AAAAACAAGG
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
89 71 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (89 bp):
GTGGTGAAAGAGGTGTAAAGCTGGCTGAAGACATTTTTACAAAAAAACAACAAGGAAACATATGT
TTTTTCTTTTAGGAAACAGAATTG
Found at i:65917052 original size:29 final size:29
Alignment explanation
Indices: 65917001--65917076 Score: 118
Period size: 29 Copynumber: 2.7 Consensus size: 29
65916991 AGTTTGCCTT
*
65917001 TTTAGCTTGCA-TTTGAACTGTTCGTCAC
1 TTTAGCTTGCACTTTGGACTGTTCGTCAC
65917029 TTTAGCTTGCACTTTGGACTGTTCGTCAC
1 TTTAGCTTGCACTTTGGACTGTTCGTCAC
* *
65917058 TTTGGCTTGTACTTTGGAC
1 TTTAGCTTGCACTTTGGAC
65917077 AACTTTCAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
28 11 0.25
29 33 0.75
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.43
Consensus pattern (29 bp):
TTTAGCTTGCACTTTGGACTGTTCGTCAC
Found at i:65917466 original size:8 final size:8
Alignment explanation
Indices: 65917453--65917481 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
65917443 TGCCTAATCT
65917453 CATACATG
1 CATACATG
65917461 CATACATG
1 CATACATG
65917469 CATACATG
1 CATACATG
65917477 CATAC
1 CATAC
65917482 GCAAACAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.28, G:0.10, T:0.24
Consensus pattern (8 bp):
CATACATG
Found at i:65921192 original size:14 final size:14
Alignment explanation
Indices: 65921173--65921200 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
65921163 ATTATTCTCA
65921173 ATTTATAATTTAAT
1 ATTTATAATTTAAT
65921187 ATTTATAATTTAAT
1 ATTTATAATTTAAT
65921201 TTATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
ATTTATAATTTAAT
Found at i:65921806 original size:4 final size:4
Alignment explanation
Indices: 65921789--65921818 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
65921779 TTCTAACCTA
*
65921789 ATCT ATCT ACCT ATCT ATCT ATCT ATCT AT
1 ATCT ATCT ATCT ATCT ATCT ATCT ATCT AT
65921819 ATATATATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.47
Consensus pattern (4 bp):
ATCT
Found at i:65921806 original size:12 final size:12
Alignment explanation
Indices: 65921784--65921818 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
65921774 CACATTTCTA
65921784 ACCTAATCTATCT
1 ACCT-ATCTATCT
65921797 ACCTATCTATCT
1 ACCTATCTATCT
*
65921809 ATCTATCTAT
1 ACCTATCTAT
65921819 ATATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 17 0.81
13 4 0.19
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.43
Consensus pattern (12 bp):
ACCTATCTATCT
Found at i:65924284 original size:35 final size:35
Alignment explanation
Indices: 65924239--65924352 Score: 140
Period size: 35 Copynumber: 3.3 Consensus size: 35
65924229 TACTCTTTGT
* *
65924239 TTGGCGTGTTTCGGTTGGATTAGCTCTTTTGAGCA
1 TTGGCGTGTTTCGGTTGGATTAACTCTTTTGAGTA
* *
65924274 TTGGTGTGTTTCAGTTGGATTAACTCTTTTGAGTA
1 TTGGCGTGTTTCGGTTGGATTAACTCTTTTGAGTA
* * * *
65924309 TTGGCATGTTTCGGGTGGACTAACTCTTGTGAGTA
1 TTGGCGTGTTTCGGTTGGATTAACTCTTTTGAGTA
65924344 CTTGG-GTGT
1 -TTGGCGTGT
65924353 GTTTTGGAGG
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
35 63 0.94
36 4 0.06
ACGTcount: A:0.14, C:0.12, G:0.31, T:0.43
Consensus pattern (35 bp):
TTGGCGTGTTTCGGTTGGATTAACTCTTTTGAGTA
Found at i:65925021 original size:15 final size:14
Alignment explanation
Indices: 65925001--65925033 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 14
65924991 TATTTAAGCT
65925001 AAAGTAAGTAAATGG
1 AAAGTAAGTAAAT-G
65925016 AAAGTAAGTAAATG
1 AAAGTAAGTAAATG
65925030 AAAG
1 AAAG
65925034 GTTTCAAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.58, C:0.00, G:0.24, T:0.18
Consensus pattern (14 bp):
AAAGTAAGTAAATG
Found at i:65925319 original size:17 final size:16
Alignment explanation
Indices: 65925297--65925330 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
65925287 CTTCACAATT
65925297 ATTGGAAGCTCGATCAG
1 ATTGGAAGCTCG-TCAG
*
65925314 ATTGGAAGTTCGTCAG
1 ATTGGAAGCTCGTCAG
65925330 A
1 A
65925331 GATCTATCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (16 bp):
ATTGGAAGCTCGTCAG
Found at i:65927334 original size:48 final size:48
Alignment explanation
Indices: 65927064--65927332 Score: 324
Period size: 48 Copynumber: 5.6 Consensus size: 48
65927054 GGTAAATTGT
* * * * * *
65927064 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGC
1 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGC
* * * * * * *
65927112 CGATGCCATGTCCCAGACATGGTGTTACACTAGCTCTCGTCTCATTGC
1 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGC
* *
65927160 CGATGCCATGTCCCAGACACGGTCTTACACTGGCTCTCATGAT-GTGGC
1 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATCGTGGC
* *
65927208 CGATGTCATATCCCAGACATGGTCTTACACTGGCTCTCATATCGTGTC
1 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGC
* * * *
65927256 CGATGTCATGTCCTAGAGATGGTCTTACATTAGCTCTCATATCGTGGC
1 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGC
*
65927304 CGATGTCATGTCCTAGACATGGTCTTACA
1 CGATGTCATGTCCCAGACATGGTCTTACA
65927333 TTGACGCACA
Statistics
Matches: 191, Mismatches: 28, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
47 2 0.01
48 188 0.98
49 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.22, T:0.29
Consensus pattern (48 bp):
CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGC
Found at i:65927703 original size:30 final size:31
Alignment explanation
Indices: 65927664--65927721 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
65927654 ATAATTTATA
65927664 TTTTGACAAAATGATCATTTTACCCCTAGAC
1 TTTTGACAAAATGATCATTTTACCCCTAGAC
* **
65927695 TTTT-ACAAAATTATTGTTTTACCCCTA
1 TTTTGACAAAATGATCATTTTACCCCTA
65927722 AGCTCGTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (31 bp):
TTTTGACAAAATGATCATTTTACCCCTAGAC
Found at i:65934839 original size:48 final size:48
Alignment explanation
Indices: 65934782--65935055 Score: 218
Period size: 48 Copynumber: 5.7 Consensus size: 48
65934772 AGGGTGAATT
*
65934782 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCT-TACATGTCGAG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCT-CATATCGAG
* * * * * * * *
65934830 GTCGATGCCATGTTCTAGACATGGTGTTACACTAGCTCTCATCT-TATT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGA-G
* * * *
65934878 GTCGATGTCAT-TTCTCAGACATGGTCTTACACTGGCTCTCATGAT-GTG
1 GCCGATGCCATGTTC-CAAACATGGTCTTACACTGGCTCTCAT-ATCGAG
* * * * * *
65934926 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAAC
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGAG
* * * * **
65934974 ACCGATGCCATG-TCTCAGACATGGTCTTACGCTGGCTCTTATATCTTG
1 GCCGATGCCATGTTC-CAAACATGGTCTTACACTGGCTCTCATATCGAG
*
65935022 GCCGATGCCATGTCCCAGAA-ATGGTCTTACACTG
1 GCCGATGCCATGTTCCA-AACATGGTCTTACACTG
65935056 ACACACATAT
Statistics
Matches: 176, Mismatches: 41, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
47 7 0.04
48 163 0.93
49 6 0.03
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.30
Consensus pattern (48 bp):
GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGAG
Found at i:65934948 original size:96 final size:97
Alignment explanation
Indices: 65934783--65935067 Score: 296
Period size: 96 Copynumber: 3.0 Consensus size: 97
65934773 GGGTGAATTG
* * * *
65934783 CCGATGCCATGT-TCCAAACATGGTCTTACACTGGCT-TACATG-TCGAGGTCGATGCCATGTTC
1 CCGATGCCATGTCT-CAGACATGGTCTTACACTGGCTCT-CATGATCGTGGCCGATGCCATGTCC
* * * * * * * ***
65934845 TAGACATGGTGTTACACTAGCTCTCATCTTATTG
64 CAAACATGGTCTTACACTAGCCCACATATCAACA
* * *
65934879 TCGATGTCATTTCTCAGACATGGTCTTACACTGGCTCTCATGAT-GTGGCCGATGCCATGTCCCA
1 CCGATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATGATCGTGGCCGATGCCATGTCCCA
65934943 AACATGGTCTTACACTAGCCCACATATCAACA
66 AACATGGTCTTACACTAGCCCACATATCAACA
* * *
65934975 CCGATGCCATGTCTCAGACATGGTCTTACGCTGGCTCTTAT-ATCTTGGCCGATGCCATGTCCCA
1 CCGATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATGATCGTGGCCGATGCCATGTCCCA
*
65935039 GAA-ATGGTCTTACACT-GACACACATATCA
66 -AACATGGTCTTACACTAG-CCCACATATCA
65935068 CCCAAATATC
Statistics
Matches: 159, Mismatches: 24, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
95 3 0.02
96 151 0.95
97 5 0.03
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (97 bp):
CCGATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATGATCGTGGCCGATGCCATGTCCCA
AACATGGTCTTACACTAGCCCACATATCAACA
Found at i:65935046 original size:144 final size:144
Alignment explanation
Indices: 65934782--65935055 Score: 336
Period size: 144 Copynumber: 1.9 Consensus size: 144
65934772 AGGGTGAATT
* * ** * * ***
65934782 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTTACATGTCGAGGTCGATGCCATGTTCTA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAACACCGATGCCATGTTCTA
* * * * * * * *
65934847 GACATGGTGTTACACTAGCTCTCATCTTATTGTCGATGTCATTTCTCAGACATGGTCTTACACTG
66 GACATGGTCTTACACTAGCTCTCATATTATGGCCGATGCCATGTCCCAGAAATGGTCTTACACTG
65934912 GCTCTCATGATGTG
131 GCTCTCATGATGTG
65934926 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAACACCGATGCCATG-TCTC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAACACCGATGCCATGTTCT-
* * *
65934990 AGACATGGTCTTACGCTGGCTCTTATATCT-TGGCCGATGCCATGTCCCAGAAATGGTCTTACAC
65 AGACATGGTCTTACACTAGCTCTCATAT-TATGGCCGATGCCATGTCCCAGAAATGGTCTTACAC
65935054 TG
129 TG
65935056 ACACACATAT
Statistics
Matches: 108, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
143 3 0.03
144 104 0.96
145 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.30
Consensus pattern (144 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAACACCGATGCCATGTTCTA
GACATGGTCTTACACTAGCTCTCATATTATGGCCGATGCCATGTCCCAGAAATGGTCTTACACTG
GCTCTCATGATGTG
Found at i:65942949 original size:24 final size:23
Alignment explanation
Indices: 65942891--65942949 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
65942881 GACCTGATGG
*
65942891 ACAGTAAGCTCTATTGAGCTGAA
1 ACAGTAAGCTCTAATGAGCTGAA
* *
65942914 ACGGTAACCTCTAATGAGCTGAAA
1 ACAGTAAGCTCTAATGAGCTG-AA
*
65942938 ATAGTAAGCTCT
1 ACAGTAAGCTCT
65942950 TACGAGTTGA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
23 18 0.62
24 11 0.38
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (23 bp):
ACAGTAAGCTCTAATGAGCTGAA
Found at i:65945903 original size:22 final size:22
Alignment explanation
Indices: 65945878--65945947 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
65945868 ATTGAAATGT
65945878 ATGCTAGCATGTTATACTTAGC
1 ATGCTAGCATGTTATACTTAGC
* * ** *
65945900 ATGCGA-CATGATATTGAAAT-GT
1 ATGCTAGCATGTTA-T-ACTTAGC
65945922 ATGCTAGCATGTTATACTTAGC
1 ATGCTAGCATGTTATACTTAGC
65945944 ATGC
1 ATGC
65945948 GTATAAATAT
Statistics
Matches: 34, Mismatches: 10, Indels: 8
0.65 0.19 0.15
Matches are distributed among these distances:
21 8 0.24
22 18 0.53
23 8 0.24
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (22 bp):
ATGCTAGCATGTTATACTTAGC
Found at i:65945923 original size:44 final size:44
Alignment explanation
Indices: 65945860--65945948 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
65945850 CTTGTTCTGT
65945860 GACATGATATTGAAATGTATGCTAGCATGTTATACTTAGCATGC
1 GACATGATATTGAAATGTATGCTAGCATGTTATACTTAGCATGC
65945904 GACATGATATTGAAATGTATGCTAGCATGTTATACTTAGCATGC
1 GACATGATATTGAAATGTATGCTAGCATGTTATACTTAGCATGC
65945948 G
1 G
65945949 TATAAATATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.34
Consensus pattern (44 bp):
GACATGATATTGAAATGTATGCTAGCATGTTATACTTAGCATGC
Found at i:65945932 original size:23 final size:23
Alignment explanation
Indices: 65945862--65945932 Score: 67
Period size: 22 Copynumber: 3.2 Consensus size: 23
65945852 TGTTCTGTGA
65945862 CATGATATTGAAATGTATGCTAG
1 CATGATATTGAAATGTATGCTAG
* ** * *
65945885 CATGTTA-T-ACTTAGCATGCGA-
1 CATGATATTGAAAT-GTATGCTAG
65945906 CATGATATTGAAATGTATGCTAG
1 CATGATATTGAAATGTATGCTAG
65945929 CATG
1 CATG
65945933 TTATACTTAG
Statistics
Matches: 34, Mismatches: 10, Indels: 8
0.65 0.19 0.15
Matches are distributed among these distances:
21 8 0.24
22 14 0.41
23 12 0.35
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (23 bp):
CATGATATTGAAATGTATGCTAG
Found at i:65946201 original size:39 final size:38
Alignment explanation
Indices: 65946141--65946234 Score: 109
Period size: 39 Copynumber: 2.4 Consensus size: 38
65946131 CGGTACCTTA
* * *
65946141 TGGTGTATAGGGTTGGATGGGTTGA-TTTATCTCCATACT
1 TGGTGTGTAGGGCTGGATGGGTTGATTTTATC-CC-TACG
*
65946180 TGGTGTGTAGGGCTGGGTGGGTTGATTTTATCCCTACG
1 TGGTGTGTAGGGCTGGATGGGTTGATTTTATCCCTACG
* *
65946218 AGGTGTGTAGGGGTGGA
1 TGGTGTGTAGGGCTGGA
65946235 CGGAGATGGT
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
38 17 0.36
39 24 0.51
40 6 0.13
ACGTcount: A:0.15, C:0.10, G:0.39, T:0.36
Consensus pattern (38 bp):
TGGTGTGTAGGGCTGGATGGGTTGATTTTATCCCTACG
Found at i:65962663 original size:29 final size:28
Alignment explanation
Indices: 65962629--65962686 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 28
65962619 TACAGGGGTT
65962629 TTCACACGGCC-TGGCACACGTCCGTGTCC
1 TTCACACGGCCAT-G-ACACGTCCGTGTCC
*
65962658 TTCACATGGCCATGACACGTCCGTGTCC
1 TTCACACGGCCATGACACGTCCGTGTCC
65962686 T
1 T
65962687 AACCCGTATG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 15 0.56
29 11 0.41
30 1 0.04
ACGTcount: A:0.16, C:0.38, G:0.22, T:0.24
Consensus pattern (28 bp):
TTCACACGGCCATGACACGTCCGTGTCC
Found at i:65967896 original size:46 final size:40
Alignment explanation
Indices: 65967880--65968114 Score: 231
Period size: 37 Copynumber: 5.9 Consensus size: 40
65967870 GGTAGTTTTA
65967880 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTG-GT
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGTGT
**
65967919 --TACACTTATCTGATCAAGAAACAAAGTGATAAGTG-GT
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGTGT
* *
65967956 --TACATTTATCTGATCAAGAGACAAAGTGATAA--GTG-
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGTGT
*
65967991 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTT
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT-GT-G--T
*
65968035 CAGCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT
1 --GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT-GT-G--T
*
65968081 AGCTACACTTATCTAATCAAG-GAC-AAGTGATAAG
1 -GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
65968115 AGGTCATATG
Statistics
Matches: 172, Mismatches: 12, Indels: 20
0.84 0.06 0.10
Matches are distributed among these distances:
35 1 0.01
36 1 0.01
37 94 0.55
40 2 0.01
41 1 0.01
43 10 0.06
44 2 0.01
45 20 0.12
46 41 0.24
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (40 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGTGT
Found at i:65967924 original size:37 final size:37
Alignment explanation
Indices: 65967882--65968075 Score: 244
Period size: 37 Copynumber: 5.0 Consensus size: 37
65967872 TAGTTTTAGC
65967882 TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
**
65967919 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
* * *
65967956 TACATTTATCTGATCAAGAGACAAAGTGATAAGTGGC
1 TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
*
65967993 TACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTT
1 TACACTTATCTGATCAAGTGACAAAGTGATAAGT-G--G--T
*
65968035 CAGCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGT
1 ----TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
65968076 AGCCTAGCTA
Statistics
Matches: 137, Mismatches: 11, Indels: 14
0.85 0.07 0.09
Matches are distributed among these distances:
37 100 0.73
38 1 0.01
40 1 0.01
41 1 0.01
43 1 0.01
45 1 0.01
46 32 0.23
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.29
Consensus pattern (37 bp):
TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
Found at i:65968100 original size:45 final size:46
Alignment explanation
Indices: 65967991--65968114 Score: 191
Period size: 46 Copynumber: 2.8 Consensus size: 46
65967981 GTGATAAGTG
* *
65967991 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
*
65968037 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT-A
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
*
65968082 GCTACACTTATCTAATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
65968115 AGGTCATATG
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 20 0.27
46 41 0.56
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
Found at i:65980638 original size:23 final size:23
Alignment explanation
Indices: 65980608--65980658 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
65980598 TTTACATAAA
65980608 CATCAAGTAAGAATAGGTGAGCT
1 CATCAAGTAAGAATAGGTGAGCT
65980631 CATCAAGTAAGAATAGGTGAGCT
1 CATCAAGTAAGAATAGGTGAGCT
65980654 CATCA
1 CATCA
65980659 TGCAATACTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.22
Consensus pattern (23 bp):
CATCAAGTAAGAATAGGTGAGCT
Found at i:65990556 original size:21 final size:21
Alignment explanation
Indices: 65990532--65990583 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
65990522 CAAAAGTATT
* *
65990532 AAATTGATCGCTAAAGGTGTC
1 AAATAGATAGCTAAAGGTGTC
65990553 AAATAGATAGCTAAAGGTGTC
1 AAATAGATAGCTAAAGGTGTC
65990574 AAATAGATAG
1 AAATAGATAG
65990584 AGAATAAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.42, C:0.10, G:0.23, T:0.25
Consensus pattern (21 bp):
AAATAGATAGCTAAAGGTGTC
Found at i:65997313 original size:8 final size:9
Alignment explanation
Indices: 65997285--65997314 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
65997275 GATTAATTTA
65997285 CAAAGTTAT
1 CAAAGTTAT
65997294 CAAAGTTAT
1 CAAAGTTAT
65997303 CAAAG-TAT
1 CAAAGTTAT
65997311 CAAA
1 CAAA
65997315 ATTTTTCCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 7 0.33
9 14 0.67
ACGTcount: A:0.50, C:0.13, G:0.10, T:0.27
Consensus pattern (9 bp):
CAAAGTTAT
Found at i:66000398 original size:20 final size:20
Alignment explanation
Indices: 66000375--66000435 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
66000365 CAGTTTATCT
66000375 ACATTACTGGTGACTTGTCC
1 ACATTACTGGTGACTTGTCC
* * * * *
66000395 ACATTTCTAGT-ATTTTATCT
1 ACATTACTGGTGA-CTTGTCC
*
66000415 ACATTACTGGTGGCTTGTCC
1 ACATTACTGGTGACTTGTCC
66000435 A
1 A
66000436 TAAATTGGTT
Statistics
Matches: 28, Mismatches: 11, Indels: 4
0.65 0.26 0.09
Matches are distributed among these distances:
19 1 0.04
20 27 0.96
ACGTcount: A:0.21, C:0.21, G:0.16, T:0.41
Consensus pattern (20 bp):
ACATTACTGGTGACTTGTCC
Found at i:66002271 original size:13 final size:13
Alignment explanation
Indices: 66002253--66002282 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
66002243 TAAATTCATG
66002253 CAACATGCCAACC
1 CAACATGCCAACC
66002266 CAACATGCCAACC
1 CAACATGCCAACC
66002279 CAAC
1 CAAC
66002283 TCACCTCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.40, C:0.47, G:0.07, T:0.07
Consensus pattern (13 bp):
CAACATGCCAACC
Found at i:66011704 original size:39 final size:39
Alignment explanation
Indices: 66011642--66011742 Score: 139
Period size: 39 Copynumber: 2.6 Consensus size: 39
66011632 ATCGTGATTT
* * * *
66011642 GAAGCCCGAAGTCTAGCTGAAGCACATAAGTGCTAAATG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* *
66011681 GAAGCCCGAAGGCTAACTAAAGCACACAAGTGTTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
66011720 GAAGCCCAAAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
66011743 TCATCAGAGC
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.39, C:0.23, G:0.25, T:0.14
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:66014312 original size:275 final size:275
Alignment explanation
Indices: 66013821--66014370 Score: 1073
Period size: 275 Copynumber: 2.0 Consensus size: 275
66013811 TGGTTGTTTG
*
66013821 GACTGATTTCAAAATACAATGTTACTAGTGTTCTAATAATTATTGGGTTTTATGAAGGAATATGG
1 GACTGATTTCAAAATACAATGTTACTAGTGTTCTAATAATTATTGGGTTCTATGAAGGAATATGG
66013886 TAGGAGTAGCATCCGCCAACTAATATTTGTAAAGAATTTGTGTAATGGGATTTGAAATATGGTGT
66 TAGGAGTAGCATCCGCCAACTAATATTTGTAAAGAATTTGTGTAATGGGATTTGAAATATGGTGT
66013951 GAGGTTTGTGATCCACCAATCGAGTGAAATGAGTATAAGACGGTTAAGTGTAAAGATTAATGTAT
131 GAGGTTTGTGATCCACCAATCGAGTGAAATGAGTATAAGACGGTTAAGTGTAAAGATTAATGTAT
66014016 AGTTATCAACCAACCAAGAATTAGAAAAGTATTCGCCAAGGTCTAAGAAGGAGTCCAACCCTTTG
196 AGTTATCAACCAACCAAGAATTAGAAAAGTATTCGCCAAGGTCTAAGAAGGAGTCCAACCCTTTG
66014081 AGTCGAAGAATTCTA
261 AGTCGAAGAATTCTA
*
66014096 GACTGATTTCAAAATACAATGTTACTGGTGTTCTAATAATTATTGGGTTCTATGAAGGAATATGG
1 GACTGATTTCAAAATACAATGTTACTAGTGTTCTAATAATTATTGGGTTCTATGAAGGAATATGG
66014161 TAGGAGTAGCATCCGCCAACTAATATTTGTAAAGAATTTGTGTAATGGGATTTGAAATATGGTGT
66 TAGGAGTAGCATCCGCCAACTAATATTTGTAAAGAATTTGTGTAATGGGATTTGAAATATGGTGT
*
66014226 GAGGTTTGTGATCTACCAATCGAGTGAAATGAGTATAAGACGGTTAAGTGTAAAGATTAATGTAT
131 GAGGTTTGTGATCCACCAATCGAGTGAAATGAGTATAAGACGGTTAAGTGTAAAGATTAATGTAT
66014291 AGTTATCAACCAACCAAGAATTAGAAAAGTATTCGCCAAGGTCTAAGAAGGAGTCCAACCCTTTG
196 AGTTATCAACCAACCAAGAATTAGAAAAGTATTCGCCAAGGTCTAAGAAGGAGTCCAACCCTTTG
66014356 AGTCGAAGAATTCTA
261 AGTCGAAGAATTCTA
66014371 CAACACCGTT
Statistics
Matches: 272, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
275 272 1.00
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (275 bp):
GACTGATTTCAAAATACAATGTTACTAGTGTTCTAATAATTATTGGGTTCTATGAAGGAATATGG
TAGGAGTAGCATCCGCCAACTAATATTTGTAAAGAATTTGTGTAATGGGATTTGAAATATGGTGT
GAGGTTTGTGATCCACCAATCGAGTGAAATGAGTATAAGACGGTTAAGTGTAAAGATTAATGTAT
AGTTATCAACCAACCAAGAATTAGAAAAGTATTCGCCAAGGTCTAAGAAGGAGTCCAACCCTTTG
AGTCGAAGAATTCTA
Found at i:66017056 original size:30 final size:30
Alignment explanation
Indices: 66016998--66017056 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
66016988 ATTTTCGAGC
* **
66016998 CTAGGGGTAAAACGGTCATTTTGTCAAAGT
1 CTAGGGGCAAAACGGTCATTTTACCAAAGT
*
66017028 CTAGGGGCAAAATGGTCATTTTACCAAAG
1 CTAGGGGCAAAACGGTCATTTTACCAAAG
66017057 AAGTGAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.27
Consensus pattern (30 bp):
CTAGGGGCAAAACGGTCATTTTACCAAAGT
Found at i:66017449 original size:46 final size:46
Alignment explanation
Indices: 66017391--66017612 Score: 227
Period size: 46 Copynumber: 4.7 Consensus size: 46
66017381 GGGTTATTGT
* * *
66017391 GAGCTAGTGTAAGACATGTCTGGAACATGCATCGGCCAC-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGA-GATGA
* * *
66017437 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCCG-TATCGAGA-CA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CGAGATGA
* * * *
66017484 AATGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACGAGACGTA
1 GA-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATG-A
*
66017532 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGA
* *
66017577 TAGTCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
66017613 ACAACTTACC
Statistics
Matches: 148, Mismatches: 17, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
45 1 0.01
46 75 0.51
47 45 0.30
48 26 0.18
49 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.22
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGA
Found at i:66017611 original size:94 final size:94
Alignment explanation
Indices: 66017393--66017612 Score: 265
Period size: 94 Copynumber: 2.3 Consensus size: 94
66017383 GTTATTGTGA
* * *
66017393 GCTAGTGTAAGACATGTCTGGAACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGACGAGAGCCAGTGTAAGACCATGTC
66017458 TGGGACATGGCATCCGTATCGAGACAAAT
66 TGGGACATGGCATCCGTATCGAGACAAAT
*
66017487 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACGA-GACGTA-AGCCAGTGTAAGA-CATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGACG-AGAGCCAGTGTAAGACCATG
* **
66017549 TCTGGGACAT-GCATCGGCTA-CGAGA-TGAT
64 TCTGGGACATGGCATCCG-TATCGAGACAAAT
66017578 AG-TCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 -GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCG
66017613 ACAACTTACC
Statistics
Matches: 111, Mismatches: 8, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
91 3 0.03
92 21 0.19
93 29 0.26
94 56 0.50
95 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.22
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGACGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCCGTATCGAGACAAAT
Found at i:66023085 original size:47 final size:46
Alignment explanation
Indices: 66023015--66023237 Score: 220
Period size: 47 Copynumber: 4.8 Consensus size: 46
66023005 AGTTATTGTG
*
66023015 AGCTAGTGTAAGACATGTCTGGGACATGGCATCCACTTCGAGACGA
1 AGCTAGTGTAAGACATGTCTGGGACATGGCATCGACTTCGAGACGA
* * *
66023061 GTGCTAGTGTAAGACATGTCTGGGACAT-GCATAGACCTCGAGACGTA
1 -AGCTAGTGTAAGACATGTCTGGGACATGGCATCGACTTCGAGACG-A
* * * * * *
66023108 AGCCAGTATAAGACATGTTTGGGACAT-GCATCGGCTACGAGATGA
1 AGCTAGTGTAAGACATGTCTGGGACATGGCATCGACTTCGAGACGA
* * * *
66023153 TAGTTAGTGTAAGACCATGTCTGGGACATGGTATCGAATT-GAGA-TA
1 -AGCTAGTGTAAGA-CATGTCTGGGACATGGCATCGACTTCGAGACGA
*
66023199 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
1 --AGCTAGTGTAAGA-CATGTCTGGGACATGGCATCGAC
66023238 ACTTTACCCC
Statistics
Matches: 144, Mismatches: 27, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
45 1 0.01
46 60 0.42
47 77 0.53
48 6 0.04
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (46 bp):
AGCTAGTGTAAGACATGTCTGGGACATGGCATCGACTTCGAGACGA
Found at i:66023120 original size:46 final size:46
Alignment explanation
Indices: 66023014--66023182 Score: 144
Period size: 46 Copynumber: 3.6 Consensus size: 46
66023004 TAGTTATTGT
* * * *
66023014 GAGCTAGTGTAAGACATGTCTGGGACATGGCATCCACTTCGAGACGA
1 GAGCCAGTATAAGACATGTCTGGGACAT-GCATACACCTCGAGACGA
* * * *
66023061 GTGCTAGTGTAAGACATGTCTGGGACATGCATAGACCTCGAGACGTA
1 GAGCCAGTATAAGACATGTCTGGGACATGCATACACCTCGAGACG-A
* ** *
66023108 -AGCCAGTATAAGACATGTTTGGGACATGCAT-CGGCTACGAGATGA
1 GAGCCAGTATAAGACATGTCTGGGACATGCATACACCT-CGAGACGA
* ** *
66023153 TAGTTAGTGTAAGACCATGTCTGGGACATG
1 GAGCCAGTATAAGA-CATGTCTGGGACATG
66023183 GTATCGAATT
Statistics
Matches: 102, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
45 3 0.03
46 57 0.56
47 42 0.41
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
GAGCCAGTATAAGACATGTCTGGGACATGCATACACCTCGAGACGA
Found at i:66023205 original size:93 final size:93
Alignment explanation
Indices: 66023013--66023237 Score: 258
Period size: 93 Copynumber: 2.4 Consensus size: 93
66023003 TTAGTTATTG
* * *
66023013 TGAGCTAGTGTAAGACATGTCTGGGACATGGCATCCACTTCGAGACGAGTGCTAGTGTAAGACAT
1 TGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGACTACGAGACGAGTGCTAGTGTAAGACAT
* *
66023078 GTCTGGGACATGCATAGACCTCGAGACG
66 GTCTGGGACATGCATAGACATCGAGACA
* * * * * *
66023106 TAAGCCAGTATAAGACATGTTTGGGACAT-GCATCGGCTACGAGATGA-TAGTTAGTGTAAGACC
1 TGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGACTACGAGACGAGT-GCTAGTGTAAGA-C
* * * *
66023169 ATGTCTGGGACATGGTATCGA-ATTGAGATA
64 ATGTCTGGGACAT-GCATAGACATCGAGACA
66023199 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
1 TGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGAC
66023238 ACTTTACCCC
Statistics
Matches: 108, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
91 1 0.01
92 25 0.23
93 57 0.53
94 18 0.17
95 7 0.06
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (93 bp):
TGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGACTACGAGACGAGTGCTAGTGTAAGACAT
GTCTGGGACATGCATAGACATCGAGACA
Found at i:66024643 original size:46 final size:46
Alignment explanation
Indices: 66024593--66024768 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
66024583 TGGTTGAGCA
66024593 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66024639 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
66024684 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
66024732 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66024769 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66024749 original size:93 final size:93
Alignment explanation
Indices: 66024590--66024761 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
66024580 GGATGGTTGA
* *
66024590 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66024655 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
66024683 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66024748 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
66024762 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:66028974 original size:38 final size:39
Alignment explanation
Indices: 66028904--66028998 Score: 138
Period size: 38 Copynumber: 2.5 Consensus size: 39
66028894 ACAAATGATT
* *
66028904 TTAAAATTATTAAAATAATTTTTTTAAAATATAAAATTA
1 TTAAAATTATTATATTAATTTTTTTAAAATATAAAATTA
* *
66028943 TTAAAATGATTATATTAA-TTTTTTGAAATATAAAATTA
1 TTAAAATTATTATATTAATTTTTTTAAAATATAAAATTA
*
66028981 TTAAAATTATTGTATTAA
1 TTAAAATTATTATATTAA
66028999 ATTCTATTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
38 35 0.70
39 15 0.30
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.47
Consensus pattern (39 bp):
TTAAAATTATTATATTAATTTTTTTAAAATATAAAATTA
Found at i:66029400 original size:15 final size:15
Alignment explanation
Indices: 66029367--66029400 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
66029357 GTCATAGATG
*
66029367 CTCTTCAAGCCTCAT
1 CTCTTCAAGCCTCAC
*
66029382 CTCTTCAAGCTTCAC
1 CTCTTCAAGCCTCAC
66029397 CTCT
1 CTCT
66029401 AAAACCTCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.41, G:0.06, T:0.35
Consensus pattern (15 bp):
CTCTTCAAGCCTCAC
Found at i:66029957 original size:14 final size:15
Alignment explanation
Indices: 66029933--66029974 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
66029923 AAACGTTAAA
66029933 AATATATTTTAATAT
1 AATATATTTTAATAT
66029948 AATA-ATTTTAATAAT
1 AATATATTTTAAT-AT
**
66029963 TTTATATTTTAA
1 AATATATTTTAA
66029975 AAAATAGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 8 0.35
15 8 0.35
16 7 0.30
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
AATATATTTTAATAT
Found at i:66029987 original size:29 final size:30
Alignment explanation
Indices: 66029935--66029997 Score: 101
Period size: 29 Copynumber: 2.1 Consensus size: 30
66029925 ACGTTAAAAA
*
66029935 TATATTTTAATATAATAATTTTAATAATTT
1 TATATTTTAATAAAATAATTTTAATAATTT
*
66029965 TATATTTTAA-AAAATAGTTTTAATAATTT
1 TATATTTTAATAAAATAATTTTAATAATTT
66029994 TATA
1 TATA
66029998 ATCATTTACT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 21 0.68
30 10 0.32
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (30 bp):
TATATTTTAATAAAATAATTTTAATAATTT
Found at i:66031664 original size:33 final size:33
Alignment explanation
Indices: 66031622--66031687 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
66031612 AAGGGACACG
66031622 GCCGTGAGTACCCCTGTTTTTAGTTTTTTCTTA
1 GCCGTGAGTACCCCTGTTTTTAGTTTTTTCTTA
66031655 GCCGTGAGTACCCCTGTTTTTAGTTTTTTCTTA
1 GCCGTGAGTACCCCTGTTTTTAGTTTTTTCTTA
66031688 ACTTCTTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.12, C:0.21, G:0.18, T:0.48
Consensus pattern (33 bp):
GCCGTGAGTACCCCTGTTTTTAGTTTTTTCTTA
Found at i:66033246 original size:43 final size:43
Alignment explanation
Indices: 66033184--66033424 Score: 196
Period size: 43 Copynumber: 5.6 Consensus size: 43
66033174 TAAGTGACTT
* * *
66033184 TTCGGTTTATCCGACGATGCATTGTGTGTGCCAGTATACTTAC
1 TTCGGTTTATCCAATGATGCATTGTGTGTGCCAGTATAGTTAC
* * ** *
66033227 TTCGGTTTATCCGATGATGCGTTGTGTGTGATAGTATAGTTGC
1 TTCGGTTTATCCAATGATGCATTGTGTGTGCCAGTATAGTTAC
* * * * * *
66033270 TTCAGCTTATCCAATGATACATTGTGTGTGCCGGTAAACTTAC
1 TTCGGTTTATCCAATGATGCATTGTGTGTGCCAGTATAGTTAC
* * * * *
66033313 TTCGATTTATCTAATGATGCATTGTGGGTGTTCA-TATAGTTTC
1 TTCGGTTTATCCAATGATGCATTGTGTGTG-CCAGTATAGTTAC
* * * * * ** * *
66033356 TTTGGTATATTCGATTATGCACCGTGTGTGCCAATATAGTTGC
1 TTCGGTTTATCCAATGATGCATTGTGTGTGCCAGTATAGTTAC
* *
66033399 TTCGGTATATCTAATGATGCATTGTG
1 TTCGGTTTATCCAATGATGCATTGTG
66033425 AGTGTAACAC
Statistics
Matches: 149, Mismatches: 47, Indels: 4
0.75 0.23 0.02
Matches are distributed among these distances:
42 2 0.01
43 146 0.98
44 1 0.01
ACGTcount: A:0.21, C:0.16, G:0.23, T:0.40
Consensus pattern (43 bp):
TTCGGTTTATCCAATGATGCATTGTGTGTGCCAGTATAGTTAC
Found at i:66034053 original size:13 final size:13
Alignment explanation
Indices: 66034035--66034059 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66034025 ATGTCCATTT
66034035 CAGATACAGATAA
1 CAGATACAGATAA
66034048 CAGATACAGATA
1 CAGATACAGATA
66034060 TGCAGATCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16
Consensus pattern (13 bp):
CAGATACAGATAA
Found at i:66034683 original size:84 final size:84
Alignment explanation
Indices: 66034542--66034700 Score: 210
Period size: 84 Copynumber: 1.9 Consensus size: 84
66034532 AATGCCCATG
* * * * *
66034542 TGGGCCCACACGCCTAGGTTGGCCTTGCCTGTGTGGCCCACACGACCTGGCCCAAAATCTACACA
1 TGGGCCCACACGCCCAGATTGGCCTTGCCCGTGTGGCCCACACGACCTAGCCCAAAATCCACACA
*
66034607 CTCGTGTGGCATGGCTATT
66 CCCGTGTGGCATGGCTATT
* * * * **
66034626 TGGGCCCATACGCCCATATTGGTCTTGCCCGTGTGGCCCATACGGTCTAGCCCAAAATCCACACA
1 TGGGCCCACACGCCCAGATTGGCCTTGCCCGTGTGGCCCACACGACCTAGCCCAAAATCCACACA
66034691 CCCGTGTGGC
66 CCCGTGTGGC
66034701 CCACACACCT
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
84 63 1.00
ACGTcount: A:0.18, C:0.35, G:0.25, T:0.22
Consensus pattern (84 bp):
TGGGCCCACACGCCCAGATTGGCCTTGCCCGTGTGGCCCACACGACCTAGCCCAAAATCCACACA
CCCGTGTGGCATGGCTATT
Found at i:66037870 original size:2 final size:2
Alignment explanation
Indices: 66037865--66037927 Score: 126
Period size: 2 Copynumber: 31.5 Consensus size: 2
66037855 TATCTATATA
66037865 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
66037907 TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG T
66037928 AAGTGATGGA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:66038418 original size:29 final size:29
Alignment explanation
Indices: 66038385--66038442 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
66038375 TCGTATGCCT
*
66038385 TACACAGCTTAAGACACGACCGTGTGGCC
1 TACACAGCTTAAGACACGACCGTGAGGCC
* *
66038414 TACACGGCTTAAGACAGGACCGTGAGGCC
1 TACACAGCTTAAGACACGACCGTGAGGCC
66038443 AGTAGTTTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.28, C:0.29, G:0.28, T:0.16
Consensus pattern (29 bp):
TACACAGCTTAAGACACGACCGTGAGGCC
Found at i:66042757 original size:95 final size:95
Alignment explanation
Indices: 66042594--66042783 Score: 362
Period size: 95 Copynumber: 2.0 Consensus size: 95
66042584 TTGAGTATCG
*
66042594 GTTACGTATAGGAATGTCAAATTTGATGCCAAAGTAATCATGGCTAGAACTATTAAATGGATATA
1 GTTACATATAGGAATGTCAAATTTGATGCCAAAGTAATCATGGCTAGAACTATTAAATGGATATA
*
66042659 TTTTGCCATAGTCAAATTAGATGTTACCAT
66 TTTTACCATAGTCAAATTAGATGTTACCAT
66042689 GTTACATATAGGAATGTCAAATTTGATGCCAAAGTAATCATGGCTAGAACTATTAAATGGATATA
1 GTTACATATAGGAATGTCAAATTTGATGCCAAAGTAATCATGGCTAGAACTATTAAATGGATATA
66042754 TTTTACCATAGTCAAATTAGATGTTACCAT
66 TTTTACCATAGTCAAATTAGATGTTACCAT
66042784 ATTAATTTGA
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 93 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.34
Consensus pattern (95 bp):
GTTACATATAGGAATGTCAAATTTGATGCCAAAGTAATCATGGCTAGAACTATTAAATGGATATA
TTTTACCATAGTCAAATTAGATGTTACCAT
Found at i:66051924 original size:22 final size:21
Alignment explanation
Indices: 66051884--66051925 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
66051874 CTTCCTTTTG
*
66051884 TCTCTTTTTATTCTCTTCTTT
1 TCTCTTTTTATTCTATTCTTT
*
66051905 TCTCTTTTTCTCTCTATTCTT
1 TCTCTTTTTAT-TCTATTCTT
66051926 GGAAATCCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.05, C:0.26, G:0.00, T:0.69
Consensus pattern (21 bp):
TCTCTTTTTATTCTATTCTTT
Found at i:66056860 original size:25 final size:25
Alignment explanation
Indices: 66056826--66056873 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
66056816 AGTAGGTACG
*
66056826 TGATGTGTAACAGTTTACCACCACA
1 TGATGTGTAACAATTTACCACCACA
*
66056851 TGATGTGTAACAATTTGCCACCA
1 TGATGTGTAACAATTTACCACCA
66056874 GGTATATGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
TGATGTGTAACAATTTACCACCACA
Found at i:66072752 original size:21 final size:21
Alignment explanation
Indices: 66072726--66072769 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
66072716 ACTAAATTAT
*
66072726 CATAATTAAAAAATCCTAATC
1 CATAATTAAAAAAACCTAATC
66072747 CATAATTAAAAAAACCTAATC
1 CATAATTAAAAAAACCTAATC
66072768 CA
1 CA
66072770 ACCAAACTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.55, C:0.20, G:0.00, T:0.25
Consensus pattern (21 bp):
CATAATTAAAAAAACCTAATC
Found at i:66076374 original size:74 final size:74
Alignment explanation
Indices: 66076271--66076434 Score: 195
Period size: 74 Copynumber: 2.2 Consensus size: 74
66076261 AATAATACAA
** * ** *
66076271 AAAAACCCCTAAAATTA-ATAACTTAAATGGTAAAAACGTCACTACATAAATACAAACTTAAATA
1 AAAAACCCCTAAAATTATA-AACTGGAATGGCAAAAAAATCACTACATAAACACAAACTTAAATA
66076335 TTTAAATTGC
65 TTTAAATTGC
* * * * * * *
66076345 AAAAACTCTTAAAATTATAAACTGGAATGGCAAAAAAATTATTACATAAACACAAAGTTGACTAT
1 AAAAACCCCTAAAATTATAAACTGGAATGGCAAAAAAATCACTACATAAACACAAACTTAAATAT
66076410 TTAAATTGC
66 TTAAATTGC
66076419 AAAAACCCCTAAAATT
1 AAAAACCCCTAAAATT
66076435 GATGGTTTGA
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
74 73 0.99
75 1 0.01
ACGTcount: A:0.51, C:0.15, G:0.07, T:0.27
Consensus pattern (74 bp):
AAAAACCCCTAAAATTATAAACTGGAATGGCAAAAAAATCACTACATAAACACAAACTTAAATAT
TTAAATTGC
Found at i:66076642 original size:33 final size:33
Alignment explanation
Indices: 66076613--66076684 Score: 108
Period size: 33 Copynumber: 2.2 Consensus size: 33
66076603 TAGAGTATTG
*
66076613 CGGTGGATACAGGCCGAAAGGAGTGGAGTACTA
1 CGGTGGATACAAGCCGAAAGGAGTGGAGTACTA
* *
66076646 CGGTGGATATAAGCCGAAATGAGTGGAGTACTA
1 CGGTGGATACAAGCCGAAAGGAGTGGAGTACTA
*
66076679 AGGTGG
1 CGGTGG
66076685 TAGTGGGTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.31, C:0.12, G:0.39, T:0.18
Consensus pattern (33 bp):
CGGTGGATACAAGCCGAAAGGAGTGGAGTACTA
Found at i:66078813 original size:103 final size:102
Alignment explanation
Indices: 66078705--66079032 Score: 421
Period size: 103 Copynumber: 3.3 Consensus size: 102
66078695 TACATTATAA
* * *
66078705 AAAATTTACATTAATAACAAATCACAAAACAATAAACTAAACAGTAACAATTTATAACCTAATCA
1 AAAATTTACATTACTAAAAAATCACAAAACAATAAACTAAACACTAACAATTTATAACCTAATCA
66078770 TAAATTACTAACAAAATAACTATAAAATTATTTTTTT
66 TAAATTACTAACAAAATAACTATAAAATTATTTTTTT
* *
66078807 AAAAATTTTATATTACTAAAAAATCACAAAAC-----ACT--A-A-T---AATTTATAATCTAAT
1 -AAAA-TTTACATTACTAAAAAATCACAAAACAATAAACTAAACACTAACAATTTATAACCTAAT
66078860 CATAAATTACTAACAAAATAACTATAAAATTATTTTTTT
64 CATAAATTACTAACAAAATAACTATAAAATTATTTTTTT
* * *
66078899 TAAATTTACATTACTAAAAAAATCACAAAACATTAAACTAAATACTAACAATTTATAACCTAATC
1 AAAATTTACATTACT-AAAAAATCACAAAACAATAAACTAAACACTAACAATTTATAACCTAATC
*
66078964 ATAAATTACTAACAAAATAACCATAAAATTATTTTTTT
65 ATAAATTACTAACAAAATAACTATAAAATTATTTTTTT
* * *
66079002 TAAA-TTCCATTACTAAAAAAATTACAAAACA
1 AAAATTTACATTACT-AAAAAATCACAAAACA
66079033 CTAACAATTT
Statistics
Matches: 201, Mismatches: 10, Indels: 29
0.84 0.04 0.12
Matches are distributed among these distances:
90 10 0.05
91 18 0.09
92 53 0.26
95 1 0.00
96 4 0.02
97 1 0.00
98 1 0.00
99 4 0.02
100 1 0.00
102 25 0.12
103 60 0.30
104 23 0.11
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (102 bp):
AAAATTTACATTACTAAAAAATCACAAAACAATAAACTAAACACTAACAATTTATAACCTAATCA
TAAATTACTAACAAAATAACTATAAAATTATTTTTTT
Found at i:66078859 original size:92 final size:90
Alignment explanation
Indices: 66078743--66079119 Score: 457
Period size: 92 Copynumber: 4.1 Consensus size: 90
66078733 ACAATAAACT
*
66078743 AAACAGTAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTATAAAATTATTTTTTTA
1 AAACACTAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTATAAAATTATTTTTTT-
* *
66078808 AAAATTTTATATTACT-AAAAAATCACA
65 TAAA--TTACATTACTAAAAAAATCACA
* *
66078835 AAACACTAATAATTTATAATCTAATCATAAATTACTAACAAAATAACTATAAAATTATTTTTTTT
1 AAACACTAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTATAAAATTATTTTTTTT
66078900 AAATTTACATTACTAAAAAAATCACAAAACA
66 AAA-TTACATTACTAAAAAAAT--C---ACA
*
66078931 TTAAACTAAATACTAACAATTTATAACCTAATCATAAATTACTAACAAAATAACCATAAAATTAT
1 --AAAC-----ACTAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTATAAAATTAT
* *
66078996 TTTTTTTAAATTCCATTACTAAAAAAATTACA
59 TTTTTTTAAATTACATTACTAAAAAAATCACA
66079028 AAACACTAACAATTTATAACCTAAAT-ATAAATTACTAACAAAATAACTAT---A--A-TTTTTT
1 AAACACTAACAATTTATAACCT-AATCATAAATTACTAACAAAATAACTATAAAATTATTTTTTT
*
66079086 TAAATTATATTACT-AAAAAATCACA
65 TAAATTACATTACTAAAAAAATCACA
66079111 AAACACTAA
1 AAACACTAA
66079120 ACTAAACACT
Statistics
Matches: 257, Mismatches: 14, Indels: 37
0.83 0.05 0.12
Matches are distributed among these distances:
83 19 0.07
84 18 0.07
85 1 0.00
87 1 0.00
90 51 0.20
91 13 0.05
92 61 0.24
93 1 0.00
95 4 0.02
96 3 0.01
97 3 0.01
98 4 0.02
102 17 0.07
103 61 0.24
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (90 bp):
AAACACTAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTATAAAATTATTTTTTTT
AAATTACATTACTAAAAAAATCACA
Found at i:66078915 original size:43 final size:43
Alignment explanation
Indices: 66078770--66078921 Score: 119
Period size: 47 Copynumber: 3.4 Consensus size: 43
66078760 AACCTAATCA
*
66078770 TAAATTACTAACAAAATAACTATAAAATTATTTTTTTAAAAATTT
1 TAAATTACTAACAAAATAACTATAAAATTATTTTTTT-TAAA-TT
* * * * * * * *
66078815 TATATTACTAA-AAAATCACAAAACACTAATAATTTATAATCT-AATCA
1 TAAATTACTAACAAAATAACTATA-A--AATTATTT-T-TTTTAAAT-T
66078862 TAAATTACTAACAAAATAACTATAAAATTATTTTTTTTAAATT
1 TAAATTACTAACAAAATAACTATAAAATTATTTTTTTTAAATT
* *
66078905 TACATTACTAAAAAAAT
1 TAAATTACTAACAAAAT
66078922 CACAAAACAT
Statistics
Matches: 80, Mismatches: 19, Indels: 18
0.68 0.16 0.15
Matches are distributed among these distances:
43 17 0.21
44 13 0.16
45 18 0.22
46 1 0.01
47 20 0.25
48 10 0.12
49 1 0.01
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (43 bp):
TAAATTACTAACAAAATAACTATAAAATTATTTTTTTTAAATT
Found at i:66079144 original size:95 final size:93
Alignment explanation
Indices: 66079028--66079261 Score: 296
Period size: 95 Copynumber: 2.5 Consensus size: 93
66079018 AAAAATTACA
*****
66079028 AAACACTAACAATTTATAACCTAAATATAAATTACTAACAAAATAACTATAATTTTTTTAA-ATT
1 AAACACTAACAATTTATAACCTAAATATAAATTACTAACAAAATAA-T-TAA-AAAAATAATATT
* *
66079092 ATATTACTAAAAAATCACAAAACACTAAACT
63 ACATTAATAAAAAATCACAAAACACTAAACT
* * *
66079123 AAACACTAACAATTTGTAACCTAATTATAAATTACTAACAAAATAATTAAAAAAATAATTTTACA
1 AAACACTAACAATTTATAACCTAAATATAAATTACTAACAAAATAATTAAAAAAATAATATTACA
66079188 TTAATAAAAAATCACAAAACACTAAACT
66 TTAATAAAAAATCACAAAACACTAAACT
* *
66079216 AAACAC-AACAATTTATAACAT-AATCCTAAATTACTAA-AAAATAATT
1 AAACACTAACAATTTATAACCTAAAT-ATAAATTACTAACAAAATAATT
66079262 TTAAAATAAT
Statistics
Matches: 123, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
91 11 0.09
92 27 0.22
93 40 0.33
94 1 0.01
95 44 0.36
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.29
Consensus pattern (93 bp):
AAACACTAACAATTTATAACCTAAATATAAATTACTAACAAAATAATTAAAAAAATAATATTACA
TTAATAAAAAATCACAAAACACTAAACT
Found at i:66079157 original size:185 final size:190
Alignment explanation
Indices: 66078706--66079168 Score: 670
Period size: 195 Copynumber: 2.4 Consensus size: 190
66078696 ACATTATAAA
* * *
66078706 AAATTTACATTAATAACAAATCACAAAACAATAAACTAAACAGTAACAATTTATAACCTAATCAT
1 AAATTTACATTACTAAAAAATCACAAAACAATAAACTAAACACTAACAATTTATAACCTAATCAT
* *
66078771 AAATTACTAACAAAATAACTATAAAATTATTTTTTTAAAAATTTTATATTACTAAAAAATCACAA
66 AAATTACTAACAAAATAACCATAAAATTATTTTTTTAAAAA-TTTACATTACTAAAAAATCACAA
* *
66078836 AACACTAATAATTTATAATCTAATCATAAATTACTAACAAAATAACTATAAAATTATTTTTTTT
130 AACACTAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTAT--AA-TATTTTTTTT
* *
66078900 AAATTTACATTACTAAAAAAATCACAAAACATTAAACTAAATACTAACAATTTATAACCTAATCA
1 AAATTTACATTACT-AAAAAATCACAAAACAATAAACTAAACACTAACAATTTATAACCTAATCA
* * *
66078965 TAAATTACTAACAAAATAACCATAAAATTATTTTTTT-TAAA-TTCCATTACTAAAAAAATTACA
65 TAAATTACTAACAAAATAACCATAAAATTATTTTTTTAAAAATTTACATTACT-AAAAAATCACA
66079028 AAACACTAACAATTTATAACCTAAAT-ATAAATTACTAACAAAATAACTAT-A-A-TTTTTTT
129 AAACACTAACAATTTATAACCT-AATCATAAATTACTAACAAAATAACTATAATATTTTTTTT
* * * *
66079087 AAA-TTATATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTGTAACCTAATTAT
1 AAATTTACATTACTAAAAAATCACAAAACAATAAACTAAACACTAACAATTTATAACCTAATCAT
66079151 AAATTACTAACAAAATAA
66 AAATTACTAACAAAATAA
66079169 TTAAAAAAAT
Statistics
Matches: 249, Mismatches: 17, Indels: 15
0.89 0.06 0.05
Matches are distributed among these distances:
185 65 0.26
186 9 0.04
187 10 0.04
188 1 0.00
190 1 0.00
192 8 0.03
193 54 0.22
194 19 0.08
195 82 0.33
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (190 bp):
AAATTTACATTACTAAAAAATCACAAAACAATAAACTAAACACTAACAATTTATAACCTAATCAT
AAATTACTAACAAAATAACCATAAAATTATTTTTTTAAAAATTTACATTACTAAAAAATCACAAA
ACACTAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTATAATATTTTTTTT
Found at i:66079267 original size:93 final size:93
Alignment explanation
Indices: 66078903--66079261 Score: 320
Period size: 90 Copynumber: 3.9 Consensus size: 93
66078893 TTTTTTTAAA
* * * *
66078903 TTTACATTACTAAAAAAATCACAAAACATTAAACTAAATACTAACAATTTATAACCTAATCATAA
1 TTTACATTAAT-AAAAAATCACAAAACACTAAACTAAACACTAACAATTTATAACATAATCATAA
** * *
66078968 ATTACTAACAAAATAA-CCATAAAATTAT
65 ATTACTAACAAAATAATTAAAAAAATAAT
** **** * * * * * *
66078996 TTT-TTTTAA-ATTCCATTACTAAAAAAAT-TACAAAACACTAACAATTTATAACCTAAAT-ATA
1 TTTACATTAATAAAAAATCAC-AAAACACTAAACTAAACACTAACAATTTATAACAT-AATCATA
*****
66079057 AATTACTAACAAAATAACTATAATTTTTTTAA-
64 AATTACTAACAAAATAA-T-TAA-AAAAATAAT
* * * * * *
66079089 ATTATATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTGTAACCTAATTATAAA
1 TTTACATTAATAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATAACATAATCATAAA
66079154 TTACTAACAAAATAATTAAAAAAATAAT
66 TTACTAACAAAATAATTAAAAAAATAAT
*
66079182 TTTACATTAATAAAAAATCACAAAACACTAAACTAAACAC-AACAATTTATAACATAATCCTAAA
1 TTTACATTAATAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATAACATAATCATAAA
66079246 TTACTAA-AAAATAATT
66 TTACTAACAAAATAATT
66079262 TTAAAATAAT
Statistics
Matches: 210, Mismatches: 45, Indels: 24
0.75 0.16 0.09
Matches are distributed among these distances:
90 48 0.23
91 18 0.09
92 33 0.16
93 46 0.22
94 17 0.08
95 48 0.23
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (93 bp):
TTTACATTAATAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATAACATAATCATAAA
TTACTAACAAAATAATTAAAAAAATAAT
Found at i:66084318 original size:5 final size:5
Alignment explanation
Indices: 66084305--66084348 Score: 56
Period size: 5 Copynumber: 9.0 Consensus size: 5
66084295 TTATTTTATT
*
66084305 TAATAA TAATA TAATA TAATA T-A-A TAATA TAATA TAAAA TAATA
1 TAAT-A TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
66084349 ATCTAATAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
3 2 0.06
4 2 0.06
5 26 0.76
6 4 0.12
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (5 bp):
TAATA
Found at i:66084325 original size:13 final size:13
Alignment explanation
Indices: 66084315--66084361 Score: 69
Period size: 13 Copynumber: 3.6 Consensus size: 13
66084305 TAATAATAAT
66084315 ATAATATAATATA
1 ATAATATAATATA
66084328 ATAATATAATATA
1 ATAATATAATATA
*
66084341 A-AATAATAATCTA
1 ATAAT-ATAATATA
66084354 ATAATATA
1 ATAATATA
66084362 TTTTAACACA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 3 0.10
13 25 0.81
14 3 0.10
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (13 bp):
ATAATATAATATA
Found at i:66084330 original size:18 final size:18
Alignment explanation
Indices: 66084306--66084356 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
66084296 TATTTTATTT
66084306 AATAATAATATAATATAA
1 AATAATAATATAATATAA
*
66084324 TATAATAATATAATATAA
1 AATAATAATATAATATAA
*
66084342 AATAATAATCTAATA
1 AATAATAATATAATA
66084357 ATATATTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (18 bp):
AATAATAATATAATATAA
Found at i:66085337 original size:17 final size:17
Alignment explanation
Indices: 66085300--66085337 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
66085290 ACAACTTCTA
*
66085300 TTAAATTATAATTATTT
1 TTAAATTATAATTATTC
66085317 TTAAATGTATAATTA-TC
1 TTAAAT-TATAATTATTC
66085334 TTAA
1 TTAA
66085338 CTTCTCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (17 bp):
TTAAATTATAATTATTC
Found at i:66087610 original size:29 final size:29
Alignment explanation
Indices: 66087573--66087631 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
66087563 TGGCCCAAAA
66087573 GAATGTTAATATTTAACAAAATTACATGT
1 GAATGTTAATATTTAACAAAATTACATGT
66087602 GAATGTTAATATTTAACAAAATTACATGT
1 GAATGTTAATATTTAACAAAATTACATGT
66087631 G
1 G
66087632 CAACTATGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (29 bp):
GAATGTTAATATTTAACAAAATTACATGT
Found at i:66092791 original size:35 final size:35
Alignment explanation
Indices: 66092742--66092992 Score: 233
Period size: 35 Copynumber: 7.2 Consensus size: 35
66092732 AGTGCCACGA
* * * *
66092742 TTCATAACTCAGTATGGTTAATACCATACCTACAT
1 TTCATAGCTTAGTATGGATAATACCATACCTACGT
* *
66092777 TTCATAGCTTAGTATGGACAATACCATACCTATGT
1 TTCATAGCTTAGTATGGATAATACCATACCTACGT
* * *
66092812 TTCACAACTTGGTATGGGA-AATACCATACCTACGT
1 TTCATAGCTTAGTAT-GGATAATACCATACCTACGT
** *
66092847 ATT-ATAGCTCGGTATGGATAATACCATACCTATGT
1 -TTCATAGCTTAGTATGGATAATACCATACCTACGT
*
66092882 TTCATAGCTTAGTATGGACAATACCATACCTACGT
1 TTCATAGCTTAGTATGGATAATACCATACCTACGT
* * * *
66092917 TTTACAAC-TCGCTATGGGA-AATACCATACCTACGT
1 TTCATAGCTTAG-TAT-GGATAATACCATACCTACGT
** *
66092952 ATT-ATAGCTCGGCATGGATAATACCATACCTACGT
1 -TTCATAGCTTAGTATGGATAATACCATACCTACGT
*
66092987 GTCATA
1 TTCATA
66092993 ACTTTACCAT
Statistics
Matches: 178, Mismatches: 28, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
34 11 0.06
35 156 0.88
36 11 0.06
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (35 bp):
TTCATAGCTTAGTATGGATAATACCATACCTACGT
Found at i:66092935 original size:105 final size:105
Alignment explanation
Indices: 66092753--66092992 Score: 399
Period size: 105 Copynumber: 2.3 Consensus size: 105
66092743 TCATAACTCA
* * *
66092753 GTATGGTTAATACCATACCTACATTTCATAGCTTAGTATGGACAATACCATACCTATGTTTCACA
1 GTATGGATAATACCATACCTACGTTTCATAGCTTAGTATGGACAATACCATACCTACGTTTCACA
* *
66092818 ACTTGGTATGGGAAATACCATACCTACGTATTATAGCTCG
66 ACTCGCTATGGGAAATACCATACCTACGTATTATAGCTCG
* *
66092858 GTATGGATAATACCATACCTATGTTTCATAGCTTAGTATGGACAATACCATACCTACGTTTTACA
1 GTATGGATAATACCATACCTACGTTTCATAGCTTAGTATGGACAATACCATACCTACGTTTCACA
66092923 ACTCGCTATGGGAAATACCATACCTACGTATTATAGCTCG
66 ACTCGCTATGGGAAATACCATACCTACGTATTATAGCTCG
* *
66092963 GCATGGATAATACCATACCTACGTGTCATA
1 GTATGGATAATACCATACCTACGTTTCATA
66092993 ACTTTACCAT
Statistics
Matches: 125, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
105 125 1.00
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (105 bp):
GTATGGATAATACCATACCTACGTTTCATAGCTTAGTATGGACAATACCATACCTACGTTTCACA
ACTCGCTATGGGAAATACCATACCTACGTATTATAGCTCG
Found at i:66094963 original size:41 final size:41
Alignment explanation
Indices: 66094917--66094999 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
66094907 ACTCAATTAA
* * *
66094917 CCTTTCAAATAAATAACCCATTTTGATTAGAATAACTGAGT
1 CCTTTCAAATAAATAACCCACTTCGATTAGAATAACTAAGT
66094958 CCTTTCAAATAAATAACCCACTTCGATTAGAATAACTAAGT
1 CCTTTCAAATAAATAACCCACTTCGATTAGAATAACTAAGT
66094999 C
1 C
66095000 GATTTTATCT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (41 bp):
CCTTTCAAATAAATAACCCACTTCGATTAGAATAACTAAGT
Found at i:66096039 original size:13 final size:13
Alignment explanation
Indices: 66096021--66096046 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
66096011 GATAAAAGAA
66096021 CATATAGAATACC
1 CATATAGAATACC
66096034 CATATAGAATACC
1 CATATAGAATACC
66096047 TAGAAGAGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.08, T:0.23
Consensus pattern (13 bp):
CATATAGAATACC
Found at i:66098036 original size:35 final size:35
Alignment explanation
Indices: 66097997--66098261 Score: 259
Period size: 35 Copynumber: 7.6 Consensus size: 35
66097987 ATATGGTTAG
**
66097997 TACCATACCTAAATTTCATAGCTCAGTATGGACAA
1 TACCATACCTACGTTTCATAGCTCAGTATGGACAA
* * *
66098032 TACCATACCTACGTTTCACAACTCGGTATGGGA-AA
1 TACCATACCTACGTTTCATAGCTCAGTAT-GGACAA
* * * *
66098067 TACCATACTTACGTATT-ATAGTTCGGTATGGATAA
1 TACCATACCTACGT-TTCATAGCTCAGTATGGACAA
* **
66098102 TATCATACCTACGTTTCATAGCTCAGTATAAACAA
1 TACCATACCTACGTTTCATAGCTCAGTATGGACAA
* * * *
66098137 TACCATACCTACATTTCACAACTCGGTATGGGA-AA
1 TACCATACCTACGTTTCATAGCTCAGTAT-GGACAA
* *
66098172 TACCATACCTACGTATT-ATAGCTCAATATGGATAA
1 TACCATACCTACGT-TTCATAGCTCAGTATGGACAA
* * * *
66098207 TATCATACCTACATGTCATAGCTCAATATGGACAA
1 TACCATACCTACGTTTCATAGCTCAGTATGGACAA
*
66098242 TACCATACCTACGTGTCATA
1 TACCATACCTACGTTTCATA
66098262 ACTTTGCCAT
Statistics
Matches: 188, Mismatches: 34, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
34 9 0.05
35 171 0.91
36 8 0.04
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.30
Consensus pattern (35 bp):
TACCATACCTACGTTTCATAGCTCAGTATGGACAA
Found at i:66098282 original size:105 final size:105
Alignment explanation
Indices: 66097983--66098264 Score: 420
Period size: 105 Copynumber: 2.7 Consensus size: 105
66097973 CGATTCACAA
* * * *
66097983 CTCAATATGGTTAGTACCATACCTAAATTTCATAGCTCAGTATGGACAATACCATACCTACGTTT
1 CTCAATATGGATAATATCATACCTACATTTCATAGCTCAGTATGGACAATACCATACCTACGTTT
*
66098048 CACAACTCGGTATGGGAAATACCATACTTACGTATTATAG
66 CACAACTCGGTATGGGAAATACCATACCTACGTATTATAG
* ** * ** *
66098088 TTCGGTATGGATAATATCATACCTACGTTTCATAGCTCAGTATAAACAATACCATACCTACATTT
1 CTCAATATGGATAATATCATACCTACATTTCATAGCTCAGTATGGACAATACCATACCTACGTTT
66098153 CACAACTCGGTATGGGAAATACCATACCTACGTATTATAG
66 CACAACTCGGTATGGGAAATACCATACCTACGTATTATAG
* * *
66098193 CTCAATATGGATAATATCATACCTACATGTCATAGCTCAATATGGACAATACCATACCTACGTGT
1 CTCAATATGGATAATATCATACCTACATTTCATAGCTCAGTATGGACAATACCATACCTACGTTT
*
66098258 CATAACT
66 CACAACT
66098265 TTGCCATGGA
Statistics
Matches: 154, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
105 154 1.00
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.30
Consensus pattern (105 bp):
CTCAATATGGATAATATCATACCTACATTTCATAGCTCAGTATGGACAATACCATACCTACGTTT
CACAACTCGGTATGGGAAATACCATACCTACGTATTATAG
Found at i:66104148 original size:10 final size:10
Alignment explanation
Indices: 66104042--66104173 Score: 71
Period size: 10 Copynumber: 13.6 Consensus size: 10
66104032 ATGAATAAAA
66104042 ATAAAAAA-T
1 ATAAAAAATT
*
66104051 AT-TAAAA-T
1 ATAAAAAATT
*
66104059 ATTAAAAATT
1 ATAAAAAATT
* *
66104069 GATATAAACTT
1 -ATAAAAAATT
66104080 ATAAAAAA-T
1 ATAAAAAATT
*
66104089 ATAAAAACTT
1 ATAAAAAATT
* *
66104099 A-CAAATATT
1 ATAAAAAATT
* * *
66104108 ATCACAAAGT
1 ATAAAAAATT
66104118 AT-AAAAA-T
1 ATAAAAAATT
* *
66104126 ATAATAAAGT
1 ATAAAAAATT
66104136 ATAAAAAATT
1 ATAAAAAATT
66104146 ATAAAAAAATT
1 AT-AAAAAATT
*
66104157 ATAAAAATTT
1 ATAAAAAATT
66104167 AATAAAA
1 -ATAAAA
66104174 CTTACTTGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
8 10 0.11
9 28 0.29
10 34 0.36
11 23 0.24
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (10 bp):
ATAAAAAATT
Found at i:66104152 original size:11 final size:11
Alignment explanation
Indices: 66104138--66104163 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
66104128 AATAAAGTAT
66104138 AAAAAATTATA
1 AAAAAATTATA
66104149 AAAAAATTATA
1 AAAAAATTATA
66104160 AAAA
1 AAAA
66104164 TTTAATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (11 bp):
AAAAAATTATA
Found at i:66104593 original size:9 final size:8
Alignment explanation
Indices: 66104567--66104591 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
66104557 TTTTGGTTTG
66104567 ATAAAAAA
1 ATAAAAAA
66104575 ATAAAAAA
1 ATAAAAAA
66104583 ATAAAAAA
1 ATAAAAAA
66104591 A
1 A
66104592 ATCATTTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
ATAAAAAA
Found at i:66104823 original size:22 final size:21
Alignment explanation
Indices: 66104782--66104839 Score: 50
Period size: 21 Copynumber: 2.8 Consensus size: 21
66104772 AATTTTTATT
*
66104782 ATTTTT-TAAGAATTAT-AATA
1 ATTTTTATAA-AATTTTAAATA
66104802 CATTTTTATAAAATTTTAAATA
1 -ATTTTTATAAAATTTTAAATA
* *
66104824 AGTTTTAT-TAATTTTA
1 ATTTTTATAAAATTTTA
66104840 CAATTTATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
20 7 0.22
21 18 0.56
22 7 0.22
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.53
Consensus pattern (21 bp):
ATTTTTATAAAATTTTAAATA
Found at i:66104941 original size:47 final size:46
Alignment explanation
Indices: 66104840--66104949 Score: 109
Period size: 46 Copynumber: 2.3 Consensus size: 46
66104830 ATTAATTTTA
**
66104840 CAATTTATTAGAATTTTTTATATTTTTATAATATTTATAAGTTTATAT
1 CAATTTA-TA-AATTTTAAATATTTTTATAATATTTATAAGTTTATAT
* *
66104888 CAATTTA-AATATTTTAAATATTTTTTTAATCTTTGATAA-TTATATAT
1 CAATTTATAA-ATTTTAAATATTTTTATAATATTT-ATAAGTT-TATAT
66104935 -ATATTTATAAATTTT
1 CA-ATTTATAAATTTT
66104950 CTGATTTTTT
Statistics
Matches: 53, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
45 1 0.02
46 24 0.45
47 19 0.36
48 9 0.17
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (46 bp):
CAATTTATAAATTTTAAATATTTTTATAATATTTATAAGTTTATAT
Found at i:66105512 original size:30 final size:30
Alignment explanation
Indices: 66105478--66105538 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
66105468 AATTTATCAT
66105478 TAATTTTGTTATTATTTTAAAGGCATTTGC
1 TAATTTTGTTATTATTTTAAAGGCATTTGC
* *
66105508 TAATTTTGTTATTATTTTAGAGGTATTTGC
1 TAATTTTGTTATTATTTTAAAGGCATTTGC
66105538 T
1 T
66105539 TGTTAAGTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.25, C:0.05, G:0.15, T:0.56
Consensus pattern (30 bp):
TAATTTTGTTATTATTTTAAAGGCATTTGC
Found at i:66109449 original size:22 final size:20
Alignment explanation
Indices: 66109411--66109450 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
66109401 AAATACTAAA
*
66109411 AAAAATTAAAAATATTTTCC
1 AAAAATTAAAAAAATTTTCC
66109431 AAAAATTGAAAATAAATTTT
1 AAAAATT-AAAA-AAATTTT
66109451 AAAAAATATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 4 0.24
22 6 0.35
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (20 bp):
AAAAATTAAAAAAATTTTCC
Found at i:66109455 original size:21 final size:20
Alignment explanation
Indices: 66109410--66109457 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
66109400 AAAATACTAA
*
66109410 AAAAAATTAAAAATATTTTC
1 AAAAAATTAAAAAAATTTTC
*
66109430 CAAAAATTGAAAATAAATTTT-
1 AAAAAATT-AAAA-AAATTTTC
66109451 AAAAAAT
1 AAAAAAT
66109458 ATGTAGACCT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 7 0.30
21 10 0.43
22 6 0.26
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.31
Consensus pattern (20 bp):
AAAAAATTAAAAAAATTTTC
Found at i:66109456 original size:22 final size:20
Alignment explanation
Indices: 66109409--66109456 Score: 51
Period size: 22 Copynumber: 2.3 Consensus size: 20
66109399 AAAAATACTA
*
66109409 AAAAAAATTAAAAATATTTT
1 AAAAAAATTAAAAAAATTTT
**
66109429 CCAAAAATTGAAAATAAATTTT
1 AAAAAAATT-AAAA-AAATTTT
66109451 AAAAAA
1 AAAAAA
66109457 TATGTAGACC
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
20 7 0.33
21 4 0.19
22 10 0.48
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (20 bp):
AAAAAAATTAAAAAAATTTT
Found at i:66109534 original size:30 final size:30
Alignment explanation
Indices: 66109500--66109559 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
66109490 ACTTAACAAG
*
66109500 CAAATACCTCTAAAATAATAATAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
* *
66109530 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
66109560 TAATAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.58, C:0.13, G:0.02, T:0.27
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:66116607 original size:13 final size:13
Alignment explanation
Indices: 66116586--66116618 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
66116576 AAAATTAAAT
66116586 AAAAGAAAAATAA
1 AAAAGAAAAATAA
*
66116599 AAAATAAAAAT-A
1 AAAAGAAAAATAA
66116611 AAAAGAAA
1 AAAAGAAA
66116619 TAAAATAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 8 0.44
13 10 0.56
ACGTcount: A:0.85, C:0.00, G:0.06, T:0.09
Consensus pattern (13 bp):
AAAAGAAAAATAA
Found at i:66117423 original size:121 final size:121
Alignment explanation
Indices: 66117246--66117486 Score: 410
Period size: 121 Copynumber: 2.0 Consensus size: 121
66117236 CCATGTGGCC
* * *
66117246 AGGCCGTGTGGTCCATACGGTCATGTCGCACGTCCGTGTGGCTCTACCGCAAGCCGTGTGGCTCG
1 AGGCCGTGTGGTCCACACGGTCATGTCGCACGCCCATGTGGCTCTACCGCAAGCCGTGTGGCTCG
66117311 ATGCTTGGGAATTTTTAGCCCTGTTTTCACACGGCCGTGGATACACCCGTGTGTCT
66 ATGCTTGGGAATTTTTAGCCCTGTTTTCACACGGCCGTGGATACACCCGTGTGTCT
* ** *
66117367 AGGCCGTGTGGTCCACACGGTCATGTCGCATGCCCATGTGGCTCTATTGCAGGCCGTGTGGCTCG
1 AGGCCGTGTGGTCCACACGGTCATGTCGCACGCCCATGTGGCTCTACCGCAAGCCGTGTGGCTCG
*
66117432 ATGCTTGGGAATTTTTAGCCCTGTTTTCACACGGCCGTGGATACATCCGTGTGTC
66 ATGCTTGGGAATTTTTAGCCCTGTTTTCACACGGCCGTGGATACACCCGTGTGTC
66117487 CATGCTGTGT
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
121 112 1.00
ACGTcount: A:0.14, C:0.27, G:0.30, T:0.29
Consensus pattern (121 bp):
AGGCCGTGTGGTCCACACGGTCATGTCGCACGCCCATGTGGCTCTACCGCAAGCCGTGTGGCTCG
ATGCTTGGGAATTTTTAGCCCTGTTTTCACACGGCCGTGGATACACCCGTGTGTCT
Found at i:66122387 original size:30 final size:31
Alignment explanation
Indices: 66122345--66122402 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
66122335 AGAGACTCAT
*
66122345 ACTTTGGTAAAATGACCATTTT-TCCCTTAA
1 ACTTTGGTAAAATGACAATTTTATCCCTTAA
*
66122375 ACTTT-GTAAAAATTACAATTTTATCCCT
1 ACTTTGGT-AAAATGACAATTTTATCCCT
66122403 AGGCCCGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 2 0.08
30 17 0.71
31 5 0.21
ACGTcount: A:0.33, C:0.19, G:0.07, T:0.41
Consensus pattern (31 bp):
ACTTTGGTAAAATGACAATTTTATCCCTTAA
Found at i:66130654 original size:15 final size:15
Alignment explanation
Indices: 66130619--66130670 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
66130609 TTAAGAATTT
*
66130619 TATTAAATTAT-ATA
1 TATTTAATTATAATA
66130633 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
66130647 TATTTAATAATAAT-
1 TATTTAATTATAATA
66130661 TATGTTAATT
1 TAT-TTAATT
66130671 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:66130724 original size:120 final size:120
Alignment explanation
Indices: 66130557--66130786 Score: 442
Period size: 120 Copynumber: 1.9 Consensus size: 120
66130547 TTTGAGTAAA
*
66130557 TTATAATATCATATATTATGATTTGAGTAAATTCATATAAGGATATTGATTATTAAGAATTTTAT
1 TTATAATATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
66130622 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATT
66 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATT
*
66130677 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
1 TTATAATATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
66130742 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
66 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
66130787 TAAATATGAT
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 108 1.00
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.50
Consensus pattern (120 bp):
TTATAATATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATT
Found at i:66130752 original size:61 final size:61
Alignment explanation
Indices: 66130567--66130754 Score: 199
Period size: 61 Copynumber: 3.1 Consensus size: 61
66130557 TTATAATATC
*
66130567 ATATATTATGATTTGAGTAAATTCATATAAGGATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
* * * * * * * * * *
66130628 ATATATTTTAATTAT-AATATATTTA-ATAATAAT-TATG-TTAATTTA-TATTTTA-TAGTATC
1 ATATATTATGATT-TGAGTAAATTCATATAAGAATAT-TGATT-ATTAAGAATTTTATTA-AATT
66130687 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
66130748 ATATATT
1 ATATATT
66130755 TTAATTATAA
Statistics
Matches: 96, Mismatches: 21, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 29 0.30
60 25 0.26
61 36 0.38
62 3 0.03
ACGTcount: A:0.41, C:0.02, G:0.08, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
Found at i:66130769 original size:16 final size:16
Alignment explanation
Indices: 66130748--66130789 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
66130738 TTATTAAATT
*
66130748 ATATATTTTAATTATA
1 ATATATTTTAATAATA
66130764 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
66130779 AT-TATGTTTAA
1 ATATAT-TTTAA
66130790 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:66130774 original size:15 final size:15
Alignment explanation
Indices: 66130739--66130780 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
66130729 TTAAGAATTT
*
66130739 TATTAAATTAT-ATA
1 TATTTAATTATAATA
66130753 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
66130767 TATTTAATAATAAT
1 TATTTAATTATAAT
66130781 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:66131015 original size:45 final size:43
Alignment explanation
Indices: 66130915--66131024 Score: 120
Period size: 45 Copynumber: 2.6 Consensus size: 43
66130905 TTTTCCATTA
66130915 TGCTATTACACCTCTATT-C---CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
* * ***
66130954 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCA-TACATTCAACCAAACACAAGA-T
66130999 TGCTATTACACCTCTATTCCAATACA
1 TGCTATTACACCTCTATTCC-ATACA
66131025 CCTCTAATCC
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 23 0.40
46 1 0.02
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (43 bp):
TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
Found at i:66131026 original size:16 final size:16
Alignment explanation
Indices: 66131005--66131056 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
66130995 GATTTGCTAT
*
66131005 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
*
66131021 TACACCTCTAATCCAT
1 TACACCTCTAATCCAA
66131037 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
66131053 TACA
1 TACA
66131057 GCGAACCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:66137394 original size:44 final size:44
Alignment explanation
Indices: 66137311--66137784 Score: 337
Period size: 44 Copynumber: 10.6 Consensus size: 44
66137301 AGCTACAAAT
* * *
66137311 TATAAATCTTATCTCCCTCAA-TTGCAGTGGAGAAAATTGAAGC
1 TATAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
* ** * *
66137354 CATAAATCTTATCTCATTGAAGTTGCAGTGGAGTAGATTGAAGA
1 TATAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
* * *
66137398 TAGAAAATCTTAT-TCCCCTGAAGTTGAAGTGG-GACAGGTTGAAGC
1 TA-TAAATCTTATCT-CCCTGAAGTTGCAGTGGAG-CAGATTGAAGC
* * * * * *
66137443 TATCATGGCCGATTTTATCTCCCTGAAGTTGTAGGGGAGTAGGTTGAAGC
1 TAT-A-----AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
* * * * *
66137493 CACT-AATCTTATCTCCCTGAAGTAGCAGTGGAACAGATTAAAGA
1 TA-TAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
* * * ** * * * *
66137537 TAGCAAATCTCATATCTATGAAGTTTCAGTAGAGCAGATTAAAAC
1 TA-TAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
* * * *
66137582 TATAAATCTTATATCCCTGAAGTTGTAGTGGAGCAGGTTGAAGT
1 TATAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
* * * * * *
66137626 TACAAGTCTTATCTCCCTGAAGTTGCGGTAGAGCATATTGAAGT
1 TATAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
* * *
66137670 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGT
1 TATAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
* * * *
66137714 TACAAATCTTATCTCCTTAAAGTTACAGTGGAGCAGATTGAAGC
1 TATAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
* * * *
66137758 AATAATTCCTATAC-CCCTAAAGTTGCA
1 TATAAATCTTAT-CTCCCTGAAGTTGCA
66137785 ATGGGTTAGA
Statistics
Matches: 336, Mismatches: 80, Indels: 29
0.76 0.18 0.07
Matches are distributed among these distances:
43 17 0.05
44 217 0.65
45 67 0.20
50 32 0.10
51 3 0.01
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (44 bp):
TATAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
Found at i:66138334 original size:22 final size:22
Alignment explanation
Indices: 66138287--66138336 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
66138277 CAACAGTGGC
*
66138287 TAAACAGTAGCGAAAATGAAAG
1 TAAACAATAGCGAAAATGAAAG
66138309 TAAACAATAG-GAAATAGTGAAA-
1 TAAACAATAGCGAAA-A-TGAAAG
66138331 TAAACA
1 TAAACA
66138337 GTGCAATATC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 4 0.16
22 16 0.64
23 5 0.20
ACGTcount: A:0.58, C:0.08, G:0.18, T:0.16
Consensus pattern (22 bp):
TAAACAATAGCGAAAATGAAAG
Found at i:66144787 original size:37 final size:37
Alignment explanation
Indices: 66144737--66144942 Score: 272
Period size: 37 Copynumber: 5.6 Consensus size: 37
66144727 ATACTCCTTG
*
66144737 ATTTGGCATGTTATCGGGTGGATTAGCTCTTATGAGC
1 ATTTGGCGTGTTATCGGGTGGATTAGCTCTTATGAGC
* *
66144774 ATTTGGCGTGTTATCGGGTGGATTAACTCTTATGAGT
1 ATTTGGCGTGTTATCGGGTGGATTAGCTCTTATGAGC
* ** *
66144811 ATTTGGTGTGTTATCGGGTATATTAGCTCTTATAAGC
1 ATTTGGCGTGTTATCGGGTGGATTAGCTCTTATGAGC
** *
66144848 ATTTGTTGTGTTATCGGGTGGATTAGCTTTTATGAGC
1 ATTTGGCGTGTTATCGGGTGGATTAGCTCTTATGAGC
* *
66144885 ATTTGGCGTGTTATCAGGTGGATTAGCTCTTACGAGC
1 ATTTGGCGTGTTATCGGGTGGATTAGCTCTTATGAGC
*
66144922 GA-TTGGCGTGTT-TCGGTTGGA
1 -ATTTGGCGTGTTATCGGGTGGA
66144943 ATATCTGCGT
Statistics
Matches: 147, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
36 7 0.05
37 139 0.95
38 1 0.01
ACGTcount: A:0.18, C:0.12, G:0.30, T:0.40
Consensus pattern (37 bp):
ATTTGGCGTGTTATCGGGTGGATTAGCTCTTATGAGC
Found at i:66146036 original size:42 final size:43
Alignment explanation
Indices: 66145966--66146046 Score: 112
Period size: 42 Copynumber: 1.9 Consensus size: 43
66145956 AAAGTTACAT
* *
66145966 GACTTGAGGCATTCCACACGGCTATGTGT-CCCTATTTTAAAA
1 GACTTGAGGCATTCCACAAGCCTATGTGTCCCCTATTTTAAAA
*
66146008 GACTTGGGGCATTCCACATAGCCT-TGTGTCCCCTATTTT
1 GACTTGAGGCATTCCACA-AGCCTATGTGTCCCCTATTTT
66146047 TTGAAATTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
42 22 0.65
43 12 0.35
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (43 bp):
GACTTGAGGCATTCCACAAGCCTATGTGTCCCCTATTTTAAAA
Found at i:66152693 original size:18 final size:19
Alignment explanation
Indices: 66152671--66152715 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
66152661 AAGAATGAAA
66152671 AAAAAATCAAG-A-AAAAG
1 AAAAAATCAAGAAGAAAAG
*
66152688 ACAAAAAGCAAGAAGAAAAG
1 A-AAAAATCAAGAAGAAAAG
66152708 AAAAAATC
1 AAAAAATC
66152716 TGAATGATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 1 0.04
18 9 0.39
19 7 0.30
20 6 0.26
ACGTcount: A:0.73, C:0.09, G:0.13, T:0.04
Consensus pattern (19 bp):
AAAAAATCAAGAAGAAAAG
Found at i:66153046 original size:17 final size:15
Alignment explanation
Indices: 66153013--66153053 Score: 55
Period size: 17 Copynumber: 2.6 Consensus size: 15
66153003 GGAAAGAAAG
*
66153013 AAAGAAAAAAGAATA
1 AAAGAAAAAAAAATA
66153028 AAAGAAATAAAAAATTA
1 AAAGAAA-AAAAAA-TA
66153045 AAAGAAAAA
1 AAAGAAAAA
66153054 TGCCATGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 7 0.30
16 7 0.30
17 9 0.39
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (15 bp):
AAAGAAAAAAAAATA
Found at i:66156431 original size:51 final size:51
Alignment explanation
Indices: 66156373--66156479 Score: 196
Period size: 51 Copynumber: 2.1 Consensus size: 51
66156363 ACTGATACAT
66156373 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
* *
66156424 TTATCACTTGTCACTGGTCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
66156475 TTATC
1 TTATC
66156480 GCTTATCGCT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
Found at i:66156486 original size:14 final size:14
Alignment explanation
Indices: 66156467--66156507 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
66156457 AAAGCTACCA
66156467 CTTATCACTTATCG
1 CTTATCACTTATCG
* *
66156481 CTTATCGCTTGTCG
1 CTTATCACTTATCG
*
66156495 CTTGTCACTTATC
1 CTTATCACTTATC
66156508 ACTGATAGAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.15, C:0.29, G:0.12, T:0.44
Consensus pattern (14 bp):
CTTATCACTTATCG
Found at i:66159946 original size:19 final size:19
Alignment explanation
Indices: 66159930--66159967 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
66159920 GGTGTTTTTC
66159930 CTTATTTTTCATGTTTTAT
1 CTTATTTTTCATGTTTTAT
66159949 CTTATTTTTCATGTTTTAT
1 CTTATTTTTCATGTTTTAT
66159968 TAACTTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.16, C:0.11, G:0.05, T:0.68
Consensus pattern (19 bp):
CTTATTTTTCATGTTTTAT
Done.