Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 207 of 333
Found at i:67585705 original size:86 final size:85
Alignment explanation
Indices: 67585543--67585705 Score: 195
Period size: 86 Copynumber: 1.9 Consensus size: 85
67585533 AGCTCATACA
* * * * * *
67585543 ATGCCATATCCCAGATATGGTCTTACATGTTATCACATATCGATGCCACAGTCCCAGACAGGGTC
1 ATGCCATATCCCAGACATGGTCTTACACGTAATCACATATCAATGCCACAGTACCAAACAGGGTC
*
67585608 TTACACGTAATCGATTAATG
66 TTACACATAATCGATTAATG
* *
67585628 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA-ATACAATGCCA-ATGTACCAAACATG
1 ATGCC-ATATCCCAGACATGGTCTTACACGTAATCACATAT-CAATGCCACA-GTACCAAACAGG
*
67585691 GTCTTACATATAATC
63 GTCTTACACATAATC
67585706 TCATCTCTGT
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
85 8 0.12
86 57 0.88
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (85 bp):
ATGCCATATCCCAGACATGGTCTTACACGTAATCACATATCAATGCCACAGTACCAAACAGGGTC
TTACACATAATCGATTAATG
Found at i:67587783 original size:20 final size:22
Alignment explanation
Indices: 67587720--67587797 Score: 71
Period size: 19 Copynumber: 3.9 Consensus size: 22
67587710 GATATAAAAT
67587720 ATATATTATATAT--TATATTA
1 ATATATTATATATAATATATTA
* * *
67587740 AT-T-TAATATTTAA-GTATTA
1 ATATATTATATATAATATATTA
67587759 ATATA-TA-ATATAATATATTA
1 ATATATTATATATAATATATTA
*
67587779 TTATATTATATATAATATA
1 ATATATTATATATAATATA
67587798 ATATATAAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 12
0.70 0.11 0.19
Matches are distributed among these distances:
18 6 0.14
19 13 0.30
20 13 0.30
21 2 0.05
22 10 0.23
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (22 bp):
ATATATTATATATAATATATTA
Found at i:67587800 original size:39 final size:37
Alignment explanation
Indices: 67587711--67587805 Score: 95
Period size: 39 Copynumber: 2.5 Consensus size: 37
67587701 GATATTTTTG
* * *
67587711 ATATAAAAT-ATATATTATATATTATATTAATTTAAT
1 ATATAATATAATATATAATATAATATATTAATTTAAT
*
67587747 ATTTAAGTATTAATATATAATATAATATATT-ATTATATTAT
1 ATATAA-TA-TAATATATAATATAATATATTAATT-TA--AT
67587788 ATATAATATAATATATAA
1 ATATAATATAATATATAA
67587806 AACATAAAGT
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
36 5 0.10
37 1 0.02
38 4 0.08
39 29 0.60
40 2 0.04
41 7 0.15
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (37 bp):
ATATAATATAATATATAATATAATATATTAATTTAAT
Found at i:67587805 original size:7 final size:7
Alignment explanation
Indices: 67587711--67587805 Score: 60
Period size: 7 Copynumber: 14.1 Consensus size: 7
67587701 GATATTTTTG
*
67587711 ATATAAA
1 ATATATA
67587718 ATATATA
1 ATATATA
*
67587725 TTATATA
1 ATATATA
*
67587732 TTATATTA
1 ATATA-TA
67587740 AT-T-TA
1 ATATATA
*
67587745 ATATTTA
1 ATATATA
67587752 AGTAT-TA
1 A-TATATA
67587759 ATATAT-
1 ATATATA
67587765 A-ATATA
1 ATATATA
*
67587771 ATATATT
1 ATATATA
67587778 AT-TATA
1 ATATATA
*
67587784 TTATAT-
1 ATATATA
67587790 ATAATATA
1 AT-ATATA
67587798 ATATATA
1 ATATATA
67587805 A
1 A
67587806 AACATAAAGT
Statistics
Matches: 71, Mismatches: 7, Indels: 20
0.72 0.07 0.20
Matches are distributed among these distances:
5 8 0.11
6 11 0.15
7 44 0.62
8 8 0.11
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (7 bp):
ATATATA
Found at i:67589037 original size:22 final size:23
Alignment explanation
Indices: 67588985--67589040 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
67588975 TAGCACGTTA
* *
67588985 AGTGCTCTCTGTTTAGCACATCT
1 AGTGCTCTCTGTATAACACATCT
* *
67589008 -GTGTTCTCTGTATAACAC-TTT
1 AGTGCTCTCTGTATAACACATCT
67589029 AGTGCTCTCTGT
1 AGTGCTCTCTGT
67589041 TCGTTTGTGC
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
21 2 0.07
22 25 0.93
ACGTcount: A:0.16, C:0.23, G:0.18, T:0.43
Consensus pattern (23 bp):
AGTGCTCTCTGTATAACACATCT
Found at i:67598960 original size:49 final size:48
Alignment explanation
Indices: 67598868--67598960 Score: 114
Period size: 49 Copynumber: 1.9 Consensus size: 48
67598858 ACATAAAAGT
* * *
67598868 CGATGCTAGTCCCAGACAGGGCTTATACTGACTTTCATATATCGAGGC
1 CGATGCTAGTCCCAGACAAGGCTTACACTGACTCTCATATATCGAGGC
* * * *
67598916 CGATGCTGTGTCCCAGACAAGTCTTACACTGGCTCTCATCTATCG
1 CGATGCT-AGTCCCAGACAAGGCTTACACTGACTCTCATATATCG
67598961 GTGTCGATGC
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
48 7 0.19
49 30 0.81
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.28
Consensus pattern (48 bp):
CGATGCTAGTCCCAGACAAGGCTTACACTGACTCTCATATATCGAGGC
Found at i:67598969 original size:49 final size:48
Alignment explanation
Indices: 67598866--67598970 Score: 113
Period size: 49 Copynumber: 2.2 Consensus size: 48
67598856 TCACATAAAA
* * *
67598866 GTCGATGCTAGTCCCAGACAGGGCTTATACTGACTTTCATATATCGAG
1 GTCGATGCTAGTCCCAGACAAGGCTTACACTGACTCTCATATATCGAG
* * * * *
67598914 GCCGATGCTGTGTCCCAGACAAGTCTTACACTGGCTCTCATCTATCG-G
1 GTCGATGCT-AGTCCCAGACAAGGCTTACACTGACTCTCATATATCGAG
67598962 TGTCGATGC
1 -GTCGATGC
67598971 CATGTCTTAG
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
48 9 0.20
49 37 0.80
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.29
Consensus pattern (48 bp):
GTCGATGCTAGTCCCAGACAAGGCTTACACTGACTCTCATATATCGAG
Found at i:67599125 original size:46 final size:45
Alignment explanation
Indices: 67599056--67599181 Score: 159
Period size: 46 Copynumber: 2.8 Consensus size: 45
67599046 ATATCTCGAG
*
67599056 GCTGATGCATGTCCCAGATATGTCTTACACTAGCTCTTGTC-TCAAAGT
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTC---TCAT-AAAGT
* *
67599104 -C-GATGCATGTCCTAGACATGTCTTACACTAGCTCTCATAATGT
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAAGT
67599147 GGCTGATGCATGTCCCAGACATGTCTTACACTAGC
1 -GCTGATGCATGTCCCAGACATGTCTTACACTAGC
67599182 ACACATATCA
Statistics
Matches: 70, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
43 6 0.09
44 1 0.01
45 1 0.01
46 61 0.87
47 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (45 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAAGT
Found at i:67599847 original size:27 final size:27
Alignment explanation
Indices: 67599787--67599850 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
67599777 TGCTTTCATG
* *
67599787 GCAAAACACTAGACTCTCAACCATTTT
1 GCAAAATAGTAGACTCTCAACCATTTT
67599814 GCAAAATAGTAGACTCTCAACCATTTT
1 GCAAAATAGTAGACTCTCAACCATTTT
67599841 GCAAAATAGT
1 GCAAAATAGT
67599851 CCCTTCATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.39, C:0.23, G:0.11, T:0.27
Consensus pattern (27 bp):
GCAAAATAGTAGACTCTCAACCATTTT
Found at i:67600958 original size:44 final size:44
Alignment explanation
Indices: 67600895--67600983 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 44
67600885 TGTCTTTGGT
*
67600895 ACATCAGAGTCTCTAACTCGTAACCGGTAATAACCCGATCTCAA
1 ACATCAGAGTCTCTAACTCGTAACCAGTAATAACCCGATCTCAA
* *
67600939 ACATCAGAGTTTCTAACTCGTAACTAGTAATAACCCGATCTCAA
1 ACATCAGAGTCTCTAACTCGTAACCAGTAATAACCCGATCTCAA
67600983 A
1 A
67600984 TCTATTTTTG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.25
Consensus pattern (44 bp):
ACATCAGAGTCTCTAACTCGTAACCAGTAATAACCCGATCTCAA
Found at i:67609987 original size:37 final size:31
Alignment explanation
Indices: 67609919--67609979 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
67609909 ATATCCCAGA
67609919 CATGGTCTTACACGTAATCACAATACAATGT
1 CATGGTCTTACACGTAATCACAATACAATGT
67609950 CATGGTCTTACACGTAATCACAATACAATG
1 CATGGTCTTACACGTAATCACAATACAATG
67609980 CCAATGTCCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (31 bp):
CATGGTCTTACACGTAATCACAATACAATGT
Found at i:67615919 original size:34 final size:34
Alignment explanation
Indices: 67615881--67615996 Score: 151
Period size: 34 Copynumber: 3.4 Consensus size: 34
67615871 GTAGGATTTG
* *
67615881 TTCTGATATGATATATGTTTTTGAAAATATGACA
1 TTCTGATATGATATATGTTTCTGGAAATATGACA
* * *
67615915 TTCTGATCTGGTATATGCTTCTGGAAATATGACA
1 TTCTGATATGATATATGTTTCTGGAAATATGACA
* * * *
67615949 TTTTGATTTGATATATGTTTCTGGTAATGTGACA
1 TTCTGATATGATATATGTTTCTGGAAATATGACA
67615983 TTCTGATATGATAT
1 TTCTGATATGATAT
67615997 TTGTATATGT
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 69 1.00
ACGTcount: A:0.28, C:0.09, G:0.18, T:0.45
Consensus pattern (34 bp):
TTCTGATATGATATATGTTTCTGGAAATATGACA
Found at i:67617555 original size:27 final size:27
Alignment explanation
Indices: 67617503--67617555 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
67617493 TGCCATCGCT
* *
67617503 GCTGCCTCTACCTCCCTTACTGCTGCC
1 GCTGCCTCTACCTCCCTCACTACTGCC
* *
67617530 GCTGCCTCTGCCTCCCTCGCTACTGC
1 GCTGCCTCTACCTCCCTCACTACTGC
67617556 ATCTGCTCTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.06, C:0.49, G:0.17, T:0.28
Consensus pattern (27 bp):
GCTGCCTCTACCTCCCTCACTACTGCC
Found at i:67617561 original size:27 final size:27
Alignment explanation
Indices: 67617503--67617565 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 27
67617493 TGCCATCGCT
* * *
67617503 GCTGCCTCTACCTCCCTTACTGCTGCC
1 GCTGCCTCTACCTCCCTCACTACTGCA
* *
67617530 GCTGCCTCTGCCTCCCTCGCTACTGCA
1 GCTGCCTCTACCTCCCTCACTACTGCA
*
67617557 TCTG-CTCTA
1 GCTGCCTCTA
67617566 AGTTATTGCT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
26 4 0.14
27 25 0.86
ACGTcount: A:0.08, C:0.46, G:0.16, T:0.30
Consensus pattern (27 bp):
GCTGCCTCTACCTCCCTCACTACTGCA
Found at i:67617993 original size:13 final size:14
Alignment explanation
Indices: 67617967--67617998 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
67617957 ACTAACGACG
67617967 AATTAAACCATTAA
1 AATTAAACCATTAA
67617981 AATTAAA-CATTAA
1 AATTAAACCATTAA
67617994 AATTA
1 AATTA
67617999 TTTATAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.31
Consensus pattern (14 bp):
AATTAAACCATTAA
Found at i:67620122 original size:23 final size:23
Alignment explanation
Indices: 67620092--67620137 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
67620082 CTTTTTTATT
*
67620092 ATTATCAAATGAATTTTCTTAAC
1 ATTATCAAATAAATTTTCTTAAC
*
67620115 ATTATCAACTAAATTTTCTTAAC
1 ATTATCAAATAAATTTTCTTAAC
67620138 CAAATACTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.39, C:0.15, G:0.02, T:0.43
Consensus pattern (23 bp):
ATTATCAAATAAATTTTCTTAAC
Found at i:67620747 original size:25 final size:25
Alignment explanation
Indices: 67620719--67620786 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
67620709 CTAGAGAAGC
* *
67620719 AGCAGAGGGATGCCGACGGAGATGT
1 AGCAGAGGGATGCCGACGGAAATAT
*
67620744 AGCAGAGGGATGCCGAAGGAAATAT
1 AGCAGAGGGATGCCGACGGAAATAT
* *
67620769 AGCAGAGGGCTGTCGACG
1 AGCAGAGGGATGCCGACG
67620787 ACGATGCCAA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.31, C:0.16, G:0.41, T:0.12
Consensus pattern (25 bp):
AGCAGAGGGATGCCGACGGAAATAT
Found at i:67620916 original size:14 final size:14
Alignment explanation
Indices: 67620897--67620941 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 14
67620887 AACAACCCAA
67620897 GATATATGCATATT
1 GATATATGCATATT
67620911 GATATATG--TA-T
1 GATATATGCATATT
67620922 -ATATATGCATATT
1 GATATATGCATATT
67620935 GATATAT
1 GATATAT
67620942 ATATTACAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
10 7 0.26
11 1 0.04
12 4 0.15
13 1 0.04
14 14 0.52
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (14 bp):
GATATATGCATATT
Found at i:67624183 original size:40 final size:40
Alignment explanation
Indices: 67624089--67624189 Score: 130
Period size: 40 Copynumber: 2.5 Consensus size: 40
67624079 TAATTAAACT
*
67624089 TTTAGCGGCGTTTTTACAAAAGCGCCGCTAAATCTCAATC
1 TTTAGCGGCGTTTTTACAAAAGCGCCGCCAAATCTCAATC
* * * *
67624129 TTTTGCAGCGTTTTTACAAAAGCTCCGCCAATTCTCAATC
1 TTTAGCGGCGTTTTTACAAAAGCGCCGCCAAATCTCAATC
* * *
67624169 TTTAGTGGCATTTTTAGAAAA
1 TTTAGCGGCGTTTTTACAAAA
67624190 AGGCCGCTAA
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.35
Consensus pattern (40 bp):
TTTAGCGGCGTTTTTACAAAAGCGCCGCCAAATCTCAATC
Found at i:67625323 original size:38 final size:36
Alignment explanation
Indices: 67625253--67625329 Score: 111
Period size: 38 Copynumber: 2.1 Consensus size: 36
67625243 CCTGACCAAT
*
67625253 ACCATAAACTTAACATACTATACCATTGAACCCTAA
1 ACCATAAACTTAAAATACTATACCATTGAACCCTAA
67625289 ACCATAAACTTAAAATA-TATTCTACCATTGAACCCTAA
1 ACCATAAACTTAAAATACTA---TACCATTGAACCCTAA
67625327 ACC
1 ACC
67625330 CCAAAATAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
35 2 0.05
36 16 0.43
38 19 0.51
ACGTcount: A:0.44, C:0.27, G:0.03, T:0.26
Consensus pattern (36 bp):
ACCATAAACTTAAAATACTATACCATTGAACCCTAA
Found at i:67625451 original size:7 final size:7
Alignment explanation
Indices: 67625439--67625541 Score: 62
Period size: 7 Copynumber: 14.4 Consensus size: 7
67625429 TGATTTTTTG
67625439 GGGTTTA
1 GGGTTTA
67625446 GGGTTTTA
1 GGG-TTTA
**
67625454 AAGTTTA
1 GGGTTTA
* *
67625461 TGGATTA
1 GGGTTTA
*
67625468 GTGTTTA
1 GGGTTTA
67625475 GGGTTTA
1 GGGTTTA
***
67625482 TATTTTA
1 GGGTTTA
**
67625489 GAATTTA
1 GGGTTTA
67625496 GGGTTTA
1 GGGTTTA
*
67625503 GTGTTTA
1 GGGTTTA
67625510 GGGTTTA
1 GGGTTTA
**
67625517 ATGTTTA
1 GGGTTTA
*
67625524 GGATTTAA
1 GGGTTT-A
67625532 GGGTTTA
1 GGGTTTA
67625539 GGG
1 GGG
67625542 AAAGCCATGC
Statistics
Matches: 70, Mismatches: 24, Indels: 4
0.71 0.24 0.04
Matches are distributed among these distances:
7 59 0.84
8 11 0.16
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.47
Consensus pattern (7 bp):
GGGTTTA
Found at i:67625919 original size:41 final size:40
Alignment explanation
Indices: 67625822--67625948 Score: 155
Period size: 41 Copynumber: 3.1 Consensus size: 40
67625812 TTGCCTAACA
* * * *
67625822 TTTTGCGGCGTTTGGACCAAAAACGCCGTTGTAGATAAACTT
1 TTTTGCGGCGTTTGGACCAAAAACGCCGCTATTGATCAA--T
* *
67625864 TTTTGCGGCGTTTGGACCAAAAATGCCGCTATTGATCAGT
1 TTTTGCGGCGTTTGGACCAAAAACGCCGCTATTGATCAAT
* *
67625904 TTTTAGCGGCGTTTGGGCCAAAAACGCCGCTATTGTTCAAT
1 TTTT-GCGGCGTTTGGACCAAAAACGCCGCTATTGATCAAT
67625945 TTTT
1 TTTT
67625949 TGCGCGCCGC
Statistics
Matches: 74, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
40 5 0.07
41 36 0.49
42 33 0.45
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.34
Consensus pattern (40 bp):
TTTTGCGGCGTTTGGACCAAAAACGCCGCTATTGATCAAT
Found at i:67627303 original size:18 final size:18
Alignment explanation
Indices: 67627282--67627325 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
67627272 GACAATCTAG
67627282 AACAGTCAGTTATGCAAT
1 AACAGTCAGTTATGCAAT
* *
67627300 AACAGTCATTTATTCAAT
1 AACAGTCAGTTATGCAAT
67627318 AACAGTCA
1 AACAGTCA
67627326 ATTAATCCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (18 bp):
AACAGTCAGTTATGCAAT
Found at i:67627545 original size:48 final size:48
Alignment explanation
Indices: 67627470--67627578 Score: 155
Period size: 48 Copynumber: 2.3 Consensus size: 48
67627460 CCGTAACGGT
* * **
67627470 AACAGTCTCAGTCACGGTACACAAAGTACCTCATCGGAACGAATCCGG
1 AACAGTCACAGTCACGGTACACAAAGTACCTCATAGGAACGAATCCAA
* *
67627518 AACAGTCACAGTCACGTTACACTAAGTACCTCATAGGAACGAATCCAA
1 AACAGTCACAGTCACGGTACACAAAGTACCTCATAGGAACGAATCCAA
*
67627566 AATAGTCACAGTC
1 AACAGTCACAGTC
67627579 TGGCGACACT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.37, C:0.28, G:0.17, T:0.18
Consensus pattern (48 bp):
AACAGTCACAGTCACGGTACACAAAGTACCTCATAGGAACGAATCCAA
Found at i:67627874 original size:3 final size:3
Alignment explanation
Indices: 67627861--67627899 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
67627851 TTTCAATACC
* *
67627861 ATA ACA ATA ATA ATA ATA ATG ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
67627900 CTTACCATTC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:67628559 original size:16 final size:15
Alignment explanation
Indices: 67628537--67628575 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
67628527 CTTTTTCTCC
67628537 TTCTTTCTCCCCTGT
1 TTCTTTCTCCCCTGT
* *
67628552 TTCGTTTCTTCTCTGT
1 TTC-TTTCTCCCCTGT
67628568 TTCTTTCT
1 TTCTTTCT
67628576 ATTCTTTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.00, C:0.31, G:0.08, T:0.62
Consensus pattern (15 bp):
TTCTTTCTCCCCTGT
Found at i:67630131 original size:18 final size:18
Alignment explanation
Indices: 67630095--67630134 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
67630085 ATTTCATATA
*
67630095 TTTTATAATATTTTTAAT
1 TTTTATAATATTTTGAAT
67630113 TTTTAT-ATATTTTAGAAT
1 TTTTATAATATTTT-GAAT
67630131 TTTT
1 TTTT
67630135 TGTCAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (18 bp):
TTTTATAATATTTTGAAT
Found at i:67630382 original size:21 final size:22
Alignment explanation
Indices: 67630306--67630388 Score: 68
Period size: 19 Copynumber: 4.0 Consensus size: 22
67630296 TAAAAAAATA
*
67630306 TTTTTAAAATAGATTCC-A--T
1 TTTTTAAAATAAATTCCAAGTT
* *
67630325 GTTTTAAAATAAATACCAAGTT
1 TTTTTAAAATAAATTCCAAGTT
* * *
67630347 TTTTATAATACAAATTTC-AGTT
1 TTTT-TAAAATAAATTCCAAGTT
67630369 TTTTTAAAATAAATT-CAAGT
1 TTTTTAAAATAAATTCCAAGT
67630389 GGAAGGTAAA
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
19 14 0.29
20 2 0.04
21 12 0.24
22 12 0.24
23 9 0.18
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.45
Consensus pattern (22 bp):
TTTTTAAAATAAATTCCAAGTT
Found at i:67630659 original size:15 final size:16
Alignment explanation
Indices: 67630623--67630660 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
67630613 AAGAAAACCT
67630623 AAAAATATTTAATTTTC
1 AAAAATATTT-ATTTTC
67630640 AAAAATATTT-TTTTC
1 AAAAATATTTATTTTC
*
67630655 TAAAAT
1 AAAAAT
67630661 TTCTAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 10 0.50
17 10 0.50
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (16 bp):
AAAAATATTTATTTTC
Found at i:67630680 original size:23 final size:24
Alignment explanation
Indices: 67630636--67630683 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
67630626 AATATTTAAT
*
67630636 TTTCAAAAATATTTTTTTCTAAAA
1 TTTCAAAAATATTATTTTCTAAAA
*
67630660 TTTCTAAAAT-TTATTTTCTAAAA
1 TTTCAAAAATATTATTTTCTAAAA
67630683 T
1 T
67630684 AATTTTATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 13 0.59
24 9 0.41
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (24 bp):
TTTCAAAAATATTATTTTCTAAAA
Found at i:67631984 original size:18 final size:18
Alignment explanation
Indices: 67631961--67632006 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
67631951 CACACCGACG
* *
67631961 TGTGGGCCTACATGGGTA
1 TGTGGGCCCACACGGGTA
67631979 TGTGGGCCCACACGGGTA
1 TGTGGGCCCACACGGGTA
67631997 TGTGGGCCCA
1 TGTGGGCCCA
67632007 TTAATCTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.15, C:0.24, G:0.39, T:0.22
Consensus pattern (18 bp):
TGTGGGCCCACACGGGTA
Found at i:67633885 original size:105 final size:102
Alignment explanation
Indices: 67633775--67633972 Score: 249
Period size: 105 Copynumber: 1.9 Consensus size: 102
67633765 ACACTCGTAG
* * * *
67633775 TGCCATAACCTAGTTATGGTCTTATCATT-AGGATGCCGTAGCCCAGCTATGGTCATACACTTTT
1 TGCCATAACCTAGTTATAGTCTTATCATTGA-AATGCCATAGCCCAACTATGGT--TACACTTTT
67633839 -ACA-TATACTGCCATGGTCCAACCATGGTCTTACGTTCACGA
63 AACACT-T--TGCCATGGTCCAACCATGGTCTTACGTTCACGA
* **
67633880 TGCCATAACCTAGTTATAGTCTTTTCATTGAAATGCCATAGCCCAACTATGGTTTTACTTTTAAC
1 TGCCATAACCTAGTTATAGTCTTATCATTGAAATGCCATAGCCCAACTATGGTTACACTTTTAAC
*
67633945 ACTTTGGCATGGTCCAACCATGGTCTTA
66 ACTTTGCCATGGTCCAACCATGGTCTTA
67633973 TCCGTCAATT
Statistics
Matches: 82, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
102 23 0.28
103 7 0.09
104 4 0.05
105 47 0.57
106 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (102 bp):
TGCCATAACCTAGTTATAGTCTTATCATTGAAATGCCATAGCCCAACTATGGTTACACTTTTAAC
ACTTTGCCATGGTCCAACCATGGTCTTACGTTCACGA
Found at i:67648166 original size:12 final size:12
Alignment explanation
Indices: 67648144--67648172 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
67648134 GAAAATTAGT
67648144 AAATT-AAAATA
1 AAATTAAAAATA
67648155 AAATTAAAAATA
1 AAATTAAAAATA
67648167 AAATTA
1 AAATTA
67648173 GATTGCAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (12 bp):
AAATTAAAAATA
Found at i:67652977 original size:17 final size:17
Alignment explanation
Indices: 67652957--67652998 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
67652947 ATATTAACAT
67652957 TTGAAAAATCTTAAAAA
1 TTGAAAAATCTTAAAAA
* *
67652974 TTGAAATATTTTAAAAA
1 TTGAAAAATCTTAAAAA
67652991 TT-AAAAAT
1 TTGAAAAAT
67652999 ATTTAAAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (17 bp):
TTGAAAAATCTTAAAAA
Found at i:67653003 original size:17 final size:17
Alignment explanation
Indices: 67652967--67653007 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
67652957 TTGAAAAATC
*
67652967 TTAAAAATTGAAATATT
1 TTAAAAATTAAAATATT
67652984 TTAAAAATTAAAA-ATAT
1 TTAAAAATTAAAATAT-T
67653001 TTAAAAA
1 TTAAAAA
67653008 CTATTTAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 2 0.09
17 20 0.91
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (17 bp):
TTAAAAATTAAAATATT
Found at i:67653006 original size:10 final size:10
Alignment explanation
Indices: 67652977--67653017 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
67652967 TTAAAAATTG
*
67652977 AAATATTTTA
1 AAATATTTAA
67652987 AAA-A-TTAA
1 AAATATTTAA
67652995 AAATATTTAA
1 AAATATTTAA
67653005 AAACTATTTAA
1 AAA-TATTTAA
67653016 AA
1 AA
67653018 TAAAAAAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
8 6 0.22
9 2 0.07
10 10 0.37
11 9 0.33
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (10 bp):
AAATATTTAA
Found at i:67654356 original size:22 final size:23
Alignment explanation
Indices: 67654344--67654390 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 23
67654334 TTCTTTTTGA
67654344 TTTTTAGTTTTTTTCAGTTGGAT
1 TTTTTAGTTTTTTTCAGTTGGAT
*
67654367 TTTTTAG-TTTTTTGAGTTGGAT
1 TTTTTAGTTTTTTTCAGTTGGAT
67654389 TT
1 TT
67654391 GAATATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 16 0.70
23 7 0.30
ACGTcount: A:0.13, C:0.02, G:0.19, T:0.66
Consensus pattern (23 bp):
TTTTTAGTTTTTTTCAGTTGGAT
Found at i:67654400 original size:23 final size:22
Alignment explanation
Indices: 67654351--67654402 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
67654341 TGATTTTTAG
**
67654351 TTTTTTTCAGTTGGATTTTTTA
1 TTTTTTTCAGTTGGATTTAATA
* *
67654373 GTTTTTTGAGTTGGATTTGAATA
1 TTTTTTTCAGTTGGATTT-AATA
67654396 TTTTTTT
1 TTTTTTT
67654403 AAAAAACAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 16 0.67
23 8 0.33
ACGTcount: A:0.15, C:0.02, G:0.17, T:0.65
Consensus pattern (22 bp):
TTTTTTTCAGTTGGATTTAATA
Found at i:67656284 original size:17 final size:17
Alignment explanation
Indices: 67656264--67656314 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 17
67656254 CACTGCTAAC
67656264 AACAAACCATTGCTTAA
1 AACAAACCATTGCTTAA
67656281 AAC--A--A-TGC-TAA
1 AACAAACCATTGCTTAA
67656292 CAACAAACCATTGCTTAA
1 -AACAAACCATTGCTTAA
67656310 AACAA
1 AACAA
67656315 TCTCATATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 14
0.66 0.00 0.34
Matches are distributed among these distances:
11 3 0.11
12 6 0.22
13 1 0.04
14 1 0.04
15 1 0.04
16 1 0.04
17 11 0.41
18 3 0.11
ACGTcount: A:0.51, C:0.24, G:0.06, T:0.20
Consensus pattern (17 bp):
AACAAACCATTGCTTAA
Found at i:67656291 original size:29 final size:29
Alignment explanation
Indices: 67656257--67656315 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
67656247 AAAAGGTCAC
67656257 TGCTAACAACAAACCATTGCTTAAAACAA
1 TGCTAACAACAAACCATTGCTTAAAACAA
67656286 TGCTAACAACAAACCATTGCTTAAAACAA
1 TGCTAACAACAAACCATTGCTTAAAACAA
67656315 T
1 T
67656316 CTCATATTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.47, C:0.24, G:0.07, T:0.22
Consensus pattern (29 bp):
TGCTAACAACAAACCATTGCTTAAAACAA
Found at i:67660964 original size:25 final size:25
Alignment explanation
Indices: 67660891--67660972 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
67660881 TATAACGGGT
* *
67660891 AGCTCAAGAGAGCCAT-TAGTCGAAA
1 AGCTCATGAGAGCCATATA-TCGAGA
* *
67660916 AGCTCATAAGAGCCAAATATCGAGA
1 AGCTCATGAGAGCCATATATCGAGA
* *
67660941 AGCTCGTGAGAGCCATATAACGAGA
1 AGCTCATGAGAGCCATATATCGAGA
*
67660966 TGCTCAT
1 AGCTCAT
67660973 AAGATCTAAA
Statistics
Matches: 46, Mismatches: 10, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
25 44 0.96
26 2 0.04
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (25 bp):
AGCTCATGAGAGCCATATATCGAGA
Found at i:67661074 original size:15 final size:15
Alignment explanation
Indices: 67661054--67661084 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
67661044 CAAGTCCTTG
67661054 GTATTTGGTGGCTGT
1 GTATTTGGTGGCTGT
67661069 GTATTTGGTGGCTGT
1 GTATTTGGTGGCTGT
67661084 G
1 G
67661085 GTCTGAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.06, G:0.42, T:0.45
Consensus pattern (15 bp):
GTATTTGGTGGCTGT
Found at i:67668640 original size:29 final size:28
Alignment explanation
Indices: 67668608--67668684 Score: 95
Period size: 29 Copynumber: 2.8 Consensus size: 28
67668598 TTTTTAAAAC
67668608 TTTAAAAATTAAAAAATATATAA-ATTA
1 TTTAAAAATTAAAAAATATATAAGATTA
*
67668635 TTTTTAAAAATTAAAAAACAT-TAAGATTA
1 --TTTAAAAATTAAAAAATATATAAGATTA
* *
67668664 TTTAAAAAGTATAAAATATAT
1 TTTAAAAATTAAAAAATATAT
67668685 TTTCTTAATA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
27 16 0.38
28 4 0.10
29 22 0.52
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (28 bp):
TTTAAAAATTAAAAAATATATAAGATTA
Found at i:67672740 original size:6 final size:6
Alignment explanation
Indices: 67672729--67672756 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
67672719 AGATGAGATG
67672729 AAGGGA AAGGGA AAGGGA AAGGGA AAGG
1 AAGGGA AAGGGA AAGGGA AAGGGA AAGG
67672757 AAGAGCAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (6 bp):
AAGGGA
Found at i:67674025 original size:22 final size:24
Alignment explanation
Indices: 67673994--67674045 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
67673984 CTAATTTTAG
*
67673994 AAAAT-CATAAAA-TTT-TAATTA
1 AAAATACATAAAAGTTTAAAATTA
67674015 AAAATACATAAAAGTTTCAAAATTA
1 AAAATACATAAAAGTTT-AAAATTA
67674040 AAAATA
1 AAAATA
67674046 TTTAAAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 5 0.19
22 7 0.27
23 3 0.12
25 11 0.42
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.31
Consensus pattern (24 bp):
AAAATACATAAAAGTTTAAAATTA
Found at i:67681733 original size:3 final size:3
Alignment explanation
Indices: 67681725--67681765 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
67681715 ATTGAGTTTA
67681725 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
67681766 AGAAAACATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:67685807 original size:59 final size:60
Alignment explanation
Indices: 67685673--67685827 Score: 154
Period size: 59 Copynumber: 2.5 Consensus size: 60
67685663 GCCTCTCAAT
* * * **
67685673 TTTTTGAAAAAATTTTAGTTCTCTTGAAA-TTTTTAAACAAATTTAATTAGGTCCTTCAAAA
1 TTTTT-AAAAAATTTCATTTATCTT-AAATTTTTTAAACAAATTTAATTAGACCCTTCAAAA
* **
67685734 TTTTGAAATGATTTCATTTATCTTAAATTTTTTAAA-AAATTGTAATT-GACCCTTCAAAA
1 TTTTTAAAAAATTTCATTTATCTTAAATTTTTTAAACAAATT-TAATTAGACCCTTCAAAA
* *
67685793 TTTTTAAAAAATTTCTTTATATCTTTTAATTTTTT
1 TTTTTAAAAAATTTCATT-TATC-TTAAATTTTTT
67685828 TGAAAGTTAT
Statistics
Matches: 77, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
59 32 0.42
60 31 0.40
61 14 0.18
ACGTcount: A:0.35, C:0.09, G:0.06, T:0.50
Consensus pattern (60 bp):
TTTTTAAAAAATTTCATTTATCTTAAATTTTTTAAACAAATTTAATTAGACCCTTCAAAA
Found at i:67685817 original size:60 final size:60
Alignment explanation
Indices: 67685674--67685827 Score: 161
Period size: 60 Copynumber: 2.5 Consensus size: 60
67685664 CCTCTCAATT
* * * **
67685674 TTTTGAAAAAATTTTAGTTCTCTTGAAA-TTTTTAAACAAATTTAATTAGGTCCTTCAAAA
1 TTTTGAAAAAATTTCATTTATCTT-AAATTTTTTAAACAAATTTAATTAGACCCTTCAAAA
**
67685734 TTTTGAAATGATTTCATTTATCTTAAATTTTTTAAA-AAATTGTAATT-GACCCTTCAAAA
1 TTTTGAAAAAATTTCATTTATCTTAAATTTTTTAAACAAATT-TAATTAGACCCTTCAAAA
* * *
67685793 TTTTTAAAAAATTTCTTTATATCTTTTAATTTTTT
1 TTTTGAAAAAATTTCATT-TATC-TTAAATTTTTT
67685828 TGAAAGTTAT
Statistics
Matches: 78, Mismatches: 12, Indels: 7
0.80 0.12 0.07
Matches are distributed among these distances:
59 32 0.41
60 36 0.46
61 10 0.13
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.49
Consensus pattern (60 bp):
TTTTGAAAAAATTTCATTTATCTTAAATTTTTTAAACAAATTTAATTAGACCCTTCAAAA
Found at i:67691118 original size:30 final size:30
Alignment explanation
Indices: 67691082--67691141 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
67691072 TTCCTGAGCC
67691082 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
* *
67691112 TAGGGGCAAAAGTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
67691142 CGTATTAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGCAAAAGTT
Found at i:67691617 original size:46 final size:46
Alignment explanation
Indices: 67691567--67691692 Score: 216
Period size: 46 Copynumber: 2.7 Consensus size: 46
67691557 TGGTTGAGCA
*
67691567 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
67691613 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
67691659 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67691693 GGGGCAGGTT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:67702913 original size:37 final size:37
Alignment explanation
Indices: 67702863--67702941 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
67702853 TTATTACGAA
* * * *
67702863 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
*
67702900 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCAG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
67702937 GTCTT
1 GTCTT
67702942 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
Found at i:67703186 original size:47 final size:47
Alignment explanation
Indices: 67703060--67703540 Score: 782
Period size: 47 Copynumber: 10.1 Consensus size: 47
67703050 CCCTTCGGGA
* * * * * *
67703060 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
67703107 CCTGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67703156 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67703203 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67703250 CCTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67703297 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67703344 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67703391 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67703440 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67703487 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67703534 CTTATCA
1 CTTATCA
67703541 TCATTTCATA
Statistics
Matches: 408, Mismatches: 22, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 324 0.79
49 84 0.21
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67703475 original size:237 final size:236
Alignment explanation
Indices: 67703060--67703540 Score: 820
Period size: 237 Copynumber: 2.0 Consensus size: 236
67703050 CCCTTCGGGA
* * * *
67703060 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCACTAGGCCCTATCACA-ATATATAC
*
67703125 ACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
65 ACTTCCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACACTTTCACATTCATCACA
*
67703190 TCGGCCATTAGGCCTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGCCCTAT
130 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTAT
*
67703255 CACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
195 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67703297 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCCTATCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCACTAGGCCCTATCACAATATATACA
*
67703361 CTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCAC
66 CTTCCACATTCATCACATCGGCCATTAGGCCCTATCAC--ATATATACACTTTCACATTCATCAC
* *
67703426 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGCCTTA
129 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTA
67703491 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
194 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67703534 CTTATCA
1 CTTATCA
67703541 TCATTTCATA
Statistics
Matches: 230, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
235 45 0.20
237 185 0.80
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.31
Consensus pattern (236 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCACTAGGCCCTATCACAATATATACA
CTTCCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATC
ACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67706751 original size:27 final size:27
Alignment explanation
Indices: 67706694--67706751 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
67706684 AACAGTCGTG
* * *
67706694 CCATGTGCGCCTAGTCCAAAAGAGACC
1 CCATGTGCACCTAGTCCAAAAGACAAC
* * *
67706721 CCATGTGCACCTGGTCCAACAGACAAT
1 CCATGTGCACCTAGTCCAAAAGACAAC
67706748 CCAT
1 CCAT
67706752 TTGCGGCAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.29, C:0.34, G:0.19, T:0.17
Consensus pattern (27 bp):
CCATGTGCACCTAGTCCAAAAGACAAC
Found at i:67725187 original size:28 final size:28
Alignment explanation
Indices: 67725128--67725187 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
67725118 GCAGTGTTCA
** * *
67725128 CACATATAGGGTTTGCTCATGGGGTTTT
1 CACATATAGGGTTCACACATGGGGTTTG
67725156 CACATATAGGGTTCACACAT-GGGTTTCG
1 CACATATAGGGTTCACACATGGGGTTT-G
67725184 CACA
1 CACA
67725188 CCTAAGGTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 6 0.22
28 21 0.78
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (28 bp):
CACATATAGGGTTCACACATGGGGTTTG
Found at i:67728210 original size:9 final size:9
Alignment explanation
Indices: 67728196--67728232 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
67728186 TTATCAATTC
67728196 TCAATGTGT
1 TCAATGTGT
67728205 TCAATGTGT
1 TCAATGTGT
*
67728214 GCAATGTGT
1 TCAATGTGT
67728223 TCAATGTGT
1 TCAATGTGT
67728232 T
1 T
67728233 GGAAATTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.22, C:0.11, G:0.24, T:0.43
Consensus pattern (9 bp):
TCAATGTGT
Found at i:67737704 original size:34 final size:34
Alignment explanation
Indices: 67737658--67737755 Score: 99
Period size: 34 Copynumber: 2.9 Consensus size: 34
67737648 TTGAACAGTC
* * **
67737658 TGGGCCTAAGCCCATTTTAGTCGCAATATCAATG
1 TGGGCCTTAGCCCATTTCAGTAACAATATCAATG
* * * * *
67737692 TGGGCCTTAGCCCAATACAGTAACAGTATCAGTT
1 TGGGCCTTAGCCCATTTCAGTAACAATATCAATG
*
67737726 TGGGCCTTAGCCCATTTCAGT-ACAGTATCA
1 TGGGCCTTAGCCCATTTCAGTAACAATATCA
67737756 GAAATGCATA
Statistics
Matches: 53, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
33 9 0.17
34 44 0.83
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (34 bp):
TGGGCCTTAGCCCATTTCAGTAACAATATCAATG
Found at i:67740429 original size:46 final size:46
Alignment explanation
Indices: 67740379--67740564 Score: 149
Period size: 46 Copynumber: 3.8 Consensus size: 46
67740369 TGGTTGAGCA
*
67740379 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * * *
67740425 TCCGAACTCGTGATGACTCGTTGAGT-TGAGTCCAAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGT--TGA---GTTGAGTCCGAGTTC-ACTT-ATG-GATGCAA--A--CG
* * *
67740482 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
67740528 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67740565 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 18, Indels: 26
0.71 0.12 0.17
Matches are distributed among these distances:
46 45 0.41
48 4 0.04
50 10 0.09
51 12 0.11
52 11 0.10
53 12 0.11
55 4 0.04
57 11 0.10
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:67743504 original size:15 final size:15
Alignment explanation
Indices: 67743484--67743552 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
67743474 GTATCTTGAG
67743484 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
67743499 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
67743514 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
67743529 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
67743544 TTTCTTTAT
1 TTTCTTTAT
67743553 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:67743553 original size:30 final size:30
Alignment explanation
Indices: 67743475--67743562 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
67743465 CATAGTATCG
* * *
67743475 TATCTT-GAGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGA-TTTCTTTATTCTGGATTTCTC
*
67743505 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
67743535 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
67743563 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 8 0.16
30 39 0.78
31 3 0.06
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:67745995 original size:46 final size:46
Alignment explanation
Indices: 67745945--67746120 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
67745935 TGGTTGAGCA
*
67745945 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
67745991 TCCGAACTCGTTGAATTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
67746038 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
67746084 CCCGATCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67746121 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 63 0.58
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:67746103 original size:93 final size:93
Alignment explanation
Indices: 67745942--67746112 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
67745932 GGATGGTTGA
* * *
67745942 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAAT
67746007 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
67746035 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGATCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAAT
67746100 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
67746113 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAAT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67748616 original size:22 final size:22
Alignment explanation
Indices: 67748588--67748631 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
67748578 ACTTCTTTTA
67748588 TACTTCTTATACCTATAAATAG
1 TACTTCTTATACCTATAAATAG
67748610 TACTTCTTATACCTATAAATAG
1 TACTTCTTATACCTATAAATAG
67748632 AGACTTTGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.18, G:0.05, T:0.41
Consensus pattern (22 bp):
TACTTCTTATACCTATAAATAG
Found at i:67760964 original size:18 final size:16
Alignment explanation
Indices: 67760927--67760983 Score: 55
Period size: 18 Copynumber: 3.6 Consensus size: 16
67760917 TGTTTCGGCT
*
67760927 AGAGAAGAAAAGAAGG
1 AGAGAAGAAAAGAAGA
67760943 AGAGAAGAAAATAGAAGA
1 AGAGAAG-AAA-AGAAGA
* *
67760961 AGAGAGGAGAAG-AGA
1 AGAGAAGAAAAGAAGA
67760976 AG-GAAGAA
1 AGAGAAGAA
67760984 TTCAGCACTC
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
14 4 0.12
15 5 0.15
16 9 0.26
17 5 0.15
18 11 0.32
ACGTcount: A:0.61, C:0.00, G:0.37, T:0.02
Consensus pattern (16 bp):
AGAGAAGAAAAGAAGA
Found at i:67763067 original size:21 final size:21
Alignment explanation
Indices: 67763043--67763119 Score: 102
Period size: 21 Copynumber: 3.6 Consensus size: 21
67763033 GTCTCTGGCT
67763043 CACACGGGTGTGTGCCTTAGC
1 CACACGGGTGTGTGCCTTAGC
*
67763064 CACACGGATGTGTGCCTTAGC
1 CACACGGGTGTGTGCCTTAGC
* *
67763085 CACACGGCTGTGTGCCTCCT-CC
1 CACACGGGTGTGTGCCT--TAGC
67763107 CACACGGGTGTGT
1 CACACGGGTGTGT
67763120 TGACCCCTAC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
21 36 0.72
22 13 0.26
23 1 0.02
ACGTcount: A:0.14, C:0.32, G:0.30, T:0.23
Consensus pattern (21 bp):
CACACGGGTGTGTGCCTTAGC
Found at i:67775567 original size:41 final size:41
Alignment explanation
Indices: 67775510--67775592 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
67775500 CTATAACTGA
67775510 ATCATACCTCAAATTAGTGCCAAAAATAGGTAGATCGAGTT
1 ATCATACCTCAAATTAGTGCCAAAAATAGGTAGATCGAGTT
*
67775551 ATCATACCTCAAATTAGTGCCAGAAATAGGTAGATCGAGTT
1 ATCATACCTCAAATTAGTGCCAAAAATAGGTAGATCGAGTT
67775592 A
1 A
67775593 CGACTTAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.27
Consensus pattern (41 bp):
ATCATACCTCAAATTAGTGCCAAAAATAGGTAGATCGAGTT
Found at i:67783627 original size:40 final size:39
Alignment explanation
Indices: 67783467--67783665 Score: 267
Period size: 39 Copynumber: 5.1 Consensus size: 39
67783457 GACTAAGATC
*
67783467 TGTGCGAGATACTAATTCCAGGCTAAGCCCGAAGGCATT
1 TGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATT
* *
67783506 TGTGTGAGATACTAATTCCGGGCTAAGCCCGAAGGTATT
1 TGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATT
67783545 TGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATT
1 TGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATT
* * * *
67783584 TGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATT
* *
67783624 TGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TGTGCGAGA-TACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
67783664 TG
1 TG
67783666 AACGAGAAGC
Statistics
Matches: 142, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 97 0.68
40 45 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
TGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATT
Found at i:67783687 original size:79 final size:79
Alignment explanation
Indices: 67783467--67783698 Score: 224
Period size: 78 Copynumber: 2.9 Consensus size: 79
67783457 GACTAAGATC
* * *** * *
67783467 TGTGCGAGATACTAATTCCAGGCTAAGCCCGAAGGCATTTGTGTGAG-ATACTAATTCCGGGCTA
1 TGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTA-ACTAAATCCGGGTTA
*
67783531 AG-CCCGAAGGTATT
65 AGTCCCGAAGGCATT
* ** * *
67783545 TGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTATTAAATCCGGGTTAA
1 TGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTAACTAAATCCGGGTTAA
67783610 GTCCCGAAGGCATT
66 GTCCCGAAGGCATT
* *
67783624 TGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-AAGCTATATCC-GG
1 TGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTAA-CTAAATCCGGG
* *
67783685 TTAAATTCCGAAGG
62 TTAAGTCCCGAAGG
67783699 TACGTGATTT
Statistics
Matches: 132, Mismatches: 16, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
78 62 0.47
79 46 0.35
80 24 0.18
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
TGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTAACTAAATCCGGGTTAA
GTCCCGAAGGCATT
Found at i:67795374 original size:28 final size:27
Alignment explanation
Indices: 67795317--67795468 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
67795307 TAAATTGTGC
*
67795317 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
67795344 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
67795372 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
67795399 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
67795427 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
67795454 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67795469 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:67795381 original size:55 final size:55
Alignment explanation
Indices: 67795317--67795468 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
67795307 TAAATTGTGC
*
67795317 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
67795372 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
67795427 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
67795469 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:67797720 original size:5 final size:5
Alignment explanation
Indices: 67797710--67797775 Score: 87
Period size: 5 Copynumber: 12.4 Consensus size: 5
67797700 TTATTAAAAA
*
67797710 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATTCAG TATAAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TA-T-AT TAT-AT
67797763 TATAT TAATAT TA
1 TATAT T-ATAT TA
67797776 ATTGTAAAAA
Statistics
Matches: 55, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
5 41 0.75
6 11 0.20
7 3 0.05
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (5 bp):
TATAT
Found at i:67798252 original size:22 final size:22
Alignment explanation
Indices: 67798227--67798280 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
67798217 CATATACAAA
* *
67798227 AGTTCACATAAAGCATTTGTAG
1 AGTTCGCATAAAGCATTTATAG
* *
67798249 AGTTCGCACATAGCATTTATAG
1 AGTTCGCATAAAGCATTTATAG
*
67798271 GGTTCGCATA
1 AGTTCGCATA
67798281 GTTAAATATG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31
Consensus pattern (22 bp):
AGTTCGCATAAAGCATTTATAG
Found at i:67799028 original size:16 final size:17
Alignment explanation
Indices: 67799007--67799038 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
67798997 GATTTGACAA
67799007 AAAAAATAGAA-AAATT
1 AAAAAATAGAATAAATT
67799023 AAAAAATAGAATAAAT
1 AAAAAATAGAATAAAT
67799039 AATTTCAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (17 bp):
AAAAAATAGAATAAATT
Found at i:67799176 original size:3 final size:3
Alignment explanation
Indices: 67799168--67799247 Score: 60
Period size: 3 Copynumber: 27.3 Consensus size: 3
67799158 TGATCACCTA
* **
67799168 ATT ATT ATT ATT ATT ATT ATT ACT GCT -TT ATT ATT ATT -TCT -TCT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T AT-T
* * *
67799212 ATT ATT ATT ACT ACT -TT ATT ATC ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
67799248 CTATCGCAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
2 3 0.05
3 62 0.94
4 1 0.02
ACGTcount: A:0.29, C:0.09, G:0.01, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:67799205 original size:26 final size:26
Alignment explanation
Indices: 67799169--67799250 Score: 92
Period size: 26 Copynumber: 2.9 Consensus size: 26
67799159 GATCACCTAA
*
67799169 TTATTATTATTATTATTATTACTGCT
1 TTATTATTATTATTATTATTACTACT
67799195 TTATTATTATTTCTTCTATTATTATTACTACT
1 TTATTATTA-----T-TATTATTATTACTACT
*
67799227 TTATTATCATTATTATTATTACTA
1 TTATTATTATTATTATTATTACTA
67799251 TCGCAATTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 12
0.77 0.03 0.19
Matches are distributed among these distances:
26 23 0.48
27 1 0.02
31 1 0.02
32 23 0.48
ACGTcount: A:0.28, C:0.10, G:0.01, T:0.61
Consensus pattern (26 bp):
TTATTATTATTATTATTATTACTACT
Found at i:67799247 original size:32 final size:32
Alignment explanation
Indices: 67799171--67799247 Score: 104
Period size: 32 Copynumber: 2.4 Consensus size: 32
67799161 TCACCTAATT
* *
67799171 ATTATTATTATTATTATTACTGCTTTATTATT
1 ATTATTATTATTATTATTACTACTTTATTATC
67799203 ATT-TCT-TCTATTATTATTACTACTTTATTATC
1 ATTAT-TAT-TATTATTATTACTACTTTATTATC
67799235 ATTATTATTATTA
1 ATTATTATTATTA
67799248 CTATCGCAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
31 2 0.05
32 35 0.90
33 2 0.05
ACGTcount: A:0.29, C:0.09, G:0.01, T:0.61
Consensus pattern (32 bp):
ATTATTATTATTATTATTACTACTTTATTATC
Found at i:67806535 original size:23 final size:23
Alignment explanation
Indices: 67806509--67806554 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
67806499 TGAGGAAACT
*
67806509 TCATACCCATGATTTTACCATGC
1 TCATACCCATGATATTACCATGC
* * *
67806532 TCATTCTCATGATATTCCCATGC
1 TCATACCCATGATATTACCATGC
67806555 CAATATCTCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.24, C:0.30, G:0.09, T:0.37
Consensus pattern (23 bp):
TCATACCCATGATATTACCATGC
Found at i:67815704 original size:16 final size:16
Alignment explanation
Indices: 67815683--67815721 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
67815673 AGCATGGTTG
67815683 AATGGGAGGGAGATCA
1 AATGGGAGGGAGATCA
67815699 AATGGGAGGGAGATCA
1 AATGGGAGGGAGATCA
67815715 AATGGGA
1 AATGGGA
67815722 ACCAATGATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.38, C:0.05, G:0.44, T:0.13
Consensus pattern (16 bp):
AATGGGAGGGAGATCA
Found at i:67820784 original size:44 final size:44
Alignment explanation
Indices: 67820646--67821020 Score: 230
Period size: 44 Copynumber: 8.5 Consensus size: 44
67820636 CACGGCGGAT
* * * * * **
67820646 CTTATCTCCCTAAAGTTACAGTGGAACATG-TTAAAGTTGCAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCA-GATTAAAGCTACAAAC
* * * * *** * * *
67820690 CTTATCTCCCTCAAGTTGTAGTAGAGTAGACCGAAGATGCAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAAC
*
67820734 CTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCTACAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAAC
* * * * * * * **
67820778 CATATCTTCCTGAAGTTACAGTGGAGTAGGTTGAAGTTACAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAAC
* * * * * *
67820822 CTTATCTCCTTGAAGTTGTAGTGGAGCAGACTGAAGATAGCAAAA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-CAAAC
** * * * **
67820867 CTTATCTTTCTGAATTTGCAATAGAGCAGATTAAAGCTACAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAAC
* * * * * *
67820911 CTCATCTTCCTAAAGTTGCAGCGGAGCAGACTAAAGCCACAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAAC
* * * * **
67820955 CTTATCTCCTTGAAGTTGCAGTGGAGTAGGTTAAAGTTACAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAAC
* * *
67820999 CTTATCTTCCTGAGGTTACAGT
1 CTTATCTCCCTGAAGTTGCAGT
67821021 TAGTTAGAAT
Statistics
Matches: 249, Mismatches: 80, Indels: 4
0.75 0.24 0.01
Matches are distributed among these distances:
43 1 0.00
44 216 0.87
45 32 0.13
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAAC
Found at i:67820838 original size:132 final size:133
Alignment explanation
Indices: 67820648--67820908 Score: 362
Period size: 132 Copynumber: 2.0 Consensus size: 133
67820638 CGGCGGATCT
* *
67820648 TATCTCCCTAAAGTTACAGTGGAACATGTTAAAGTTGCAAGTCTTATCTCCCTCAAGTTGTAGTA
1 TATCTCCCTAAAGTTACAGTGGAACAGGTTAAAGTTACAAGTCTTATCTCCCTCAAGTTGTAGTA
* * *
67820713 GAGTAGACCGAAGAT-GCAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCTACAAA
66 GAGCAGACCGAAGATAGCAAAACTTATCTCCCTGAAGTTGCAATAGAGCAGATTAAAGCTACAAA
67820777 CCA
131 CCA
* * ** * * * *
67820780 TATCTTCCTGAAGTTACAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTCCTTGAAGTTGTAGTG
1 TATCTCCCTAAAGTTACAGTGGAACAGGTTAAAGTTACAAGTCTTATCTCCCTCAAGTTGTAGTA
* ** *
67820845 GAGCAGACTGAAGATAGCAAAACTTATCTTTCTGAATTTGCAATAGAGCAGATTAAAGCTACAA
66 GAGCAGACCGAAGATAGCAAAACTTATCTCCCTGAAGTTGCAATAGAGCAGATTAAAGCTACAA
67820909 GTCTCATCTT
Statistics
Matches: 111, Mismatches: 17, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
132 68 0.61
133 43 0.39
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (133 bp):
TATCTCCCTAAAGTTACAGTGGAACAGGTTAAAGTTACAAGTCTTATCTCCCTCAAGTTGTAGTA
GAGCAGACCGAAGATAGCAAAACTTATCTCCCTGAAGTTGCAATAGAGCAGATTAAAGCTACAAA
CCA
Found at i:67820918 original size:133 final size:132
Alignment explanation
Indices: 67820648--67820980 Score: 389
Period size: 133 Copynumber: 2.5 Consensus size: 132
67820638 CGGCGGATCT
* * * * * * *
67820648 TATCTCCCTAAAGTTACAGTGGAACATGTTAAAGTTGCAAGTCTTATCTCCCTCAAGTTGTAGTA
1 TATCTTCCTAAAGTTACAGTGGAGCAGGTTAAAGTTACAAGTCTTATCTCCTTGAAGTTGTAGTG
* * *
67820713 GAGTAGACCGAAGATGCAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCTACAAAC
66 GAGCAGACCGAAGATGCAAAACTTATCTCCCTGAAGTTGCAATAGAGCAGATTAAAGCTACAAAC
67820778 CA
131 CA
* * *
67820780 TATCTTCCTGAAGTTACAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTCCTTGAAGTTGTAGTG
1 TATCTTCCTAAAGTTACAGTGGAGCAGGTTAAAGTTACAAGTCTTATCTCCTTGAAGTTGTAGTG
* ** * *
67820845 GAGCAGACTGAAGATAGCAAAACTTATCTTTCTGAATTTGCAATAGAGCAGATTAAAGCTACAAG
66 GAGCAGACCGAAGAT-GCAAAACTTATCTCCCTGAAGTTGCAATAGAGCAGATTAAAGCTACAAA
*
67820910 TC-
130 CCA
* * ** ** ** *
67820912 TCATCTTCCTAAAGTTGCAGCGGAGCAGACTAAAGCCACAAACCTTATCTCCTTGAAGTTGCAGT
1 T-ATCTTCCTAAAGTTACAGTGGAGCAGGTTAAAGTTACAAGTCTTATCTCCTTGAAGTTGTAGT
67820977 GGAG
65 GGAG
67820981 TAGGTTAAAG
Statistics
Matches: 168, Mismatches: 31, Indels: 3
0.83 0.15 0.01
Matches are distributed among these distances:
132 69 0.41
133 99 0.59
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (132 bp):
TATCTTCCTAAAGTTACAGTGGAGCAGGTTAAAGTTACAAGTCTTATCTCCTTGAAGTTGTAGTG
GAGCAGACCGAAGATGCAAAACTTATCTCCCTGAAGTTGCAATAGAGCAGATTAAAGCTACAAAC
CA
Found at i:67828658 original size:49 final size:49
Alignment explanation
Indices: 67828570--67828691 Score: 118
Period size: 49 Copynumber: 2.5 Consensus size: 49
67828560 TGTTGTGTGT
* * * *
67828570 CAATGTAAGACCTGTCTGGGACATGGCATCGACAGCGATAGATGAGAGC
1 CAATGTAAGACCTGTCTGGGACACGACATCGACAGCGATAGATAAAAGC
* * * * ** * *
67828619 CAGTGTAAGACCTGTCTGGGATACGACATTGGCCTCGATATATAAAAGT
1 CAATGTAAGACCTGTCTGGGACACGACATCGACAGCGATAGATAAAAGC
*
67828668 CAATGTAAGACCATGTCTGAGACA
1 CAATGTAAGACC-TGTCTGGGACA
67828692 TGGCGTCAGC
Statistics
Matches: 57, Mismatches: 15, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
49 48 0.84
50 9 0.16
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (49 bp):
CAATGTAAGACCTGTCTGGGACACGACATCGACAGCGATAGATAAAAGC
Found at i:67835799 original size:9 final size:9
Alignment explanation
Indices: 67835785--67835811 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
67835775 CACACACTAA
67835785 TAATAATAG
1 TAATAATAG
67835794 TAATAATAG
1 TAATAATAG
67835803 TAATAATAG
1 TAATAATAG
67835812 AAAGATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.11, T:0.33
Consensus pattern (9 bp):
TAATAATAG
Found at i:67836196 original size:23 final size:22
Alignment explanation
Indices: 67836149--67836204 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 22
67836139 AACAATACTA
*
67836149 ATAT-TACATAAAGATATACCT
1 ATATATACATAAAGATATAACT
67836170 ATATATACATTAAAGATATATAC-
1 ATATATACA-TAAAGATATA-ACT
67836193 ATATATA-ATAAA
1 ATATATACATAAA
67836205 ATACATGAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
21 8 0.26
22 5 0.16
23 17 0.55
24 1 0.03
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.34
Consensus pattern (22 bp):
ATATATACATAAAGATATAACT
Found at i:67836224 original size:26 final size:24
Alignment explanation
Indices: 67836195--67836256 Score: 63
Period size: 28 Copynumber: 2.5 Consensus size: 24
67836185 ATATATACAT
67836195 ATATAATAAAATACATGAATAATATG
1 ATATAATAAAATACATG--TAATATG
* *
67836221 ATATTAAAAAAAATATATGTAATATG
1 ATA-T-AATAAAATACATGTAATATG
67836247 -TATAATAAAA
1 ATATAATAAAA
67836257 ATAATAATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
23 6 0.19
24 1 0.03
25 2 0.06
26 10 0.32
27 1 0.03
28 11 0.35
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (24 bp):
ATATAATAAAATACATGTAATATG
Found at i:67836453 original size:15 final size:15
Alignment explanation
Indices: 67836435--67836468 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
67836425 TAATAGTGAA
*
67836435 AATAATAGATATAAT
1 AATAATAGAAATAAT
*
67836450 AATAATAGAAATGAT
1 AATAATAGAAATAAT
67836465 AATA
1 AATA
67836469 CTGTATGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (15 bp):
AATAATAGAAATAAT
Found at i:67836649 original size:3 final size:3
Alignment explanation
Indices: 67836629--67836677 Score: 50
Period size: 3 Copynumber: 16.7 Consensus size: 3
67836619 AAATATACAC
*
67836629 TAA TATA TAA -AA -AA TAA TAA TAA TAAA TAA CAA TAA T-A TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA
67836673 TAA TA
1 TAA TA
67836678 GCAAAATTAC
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
2 6 0.15
3 28 0.70
4 6 0.15
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:67838856 original size:44 final size:45
Alignment explanation
Indices: 67838800--67838893 Score: 181
Period size: 44 Copynumber: 2.1 Consensus size: 45
67838790 AAGTCATGCC
67838800 TATGAGAATGATTTTGTGATGACCTTATGATTATAGGTCTATAAT
1 TATGAGAATGATTTTGTGATGACCTTATGATTATAGGTCTATAAT
67838845 TATGA-AATGATTTTGTGATGACCTTATGATTATAGGTCTATAAT
1 TATGAGAATGATTTTGTGATGACCTTATGATTATAGGTCTATAAT
67838889 TATGA
1 TATGA
67838894 TGTATAAACA
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 44 0.90
45 5 0.10
ACGTcount: A:0.32, C:0.06, G:0.19, T:0.43
Consensus pattern (45 bp):
TATGAGAATGATTTTGTGATGACCTTATGATTATAGGTCTATAAT
Found at i:67843841 original size:22 final size:22
Alignment explanation
Indices: 67843807--67843852 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
67843797 CAAATAACTT
** * *
67843807 TTTTTAATTATAATTAATATTA
1 TTTTTAAAAATAAATAATAATA
67843829 TTTTTAAAAATAAATAATAATA
1 TTTTTAAAAATAAATAATAATA
67843851 TT
1 TT
67843853 ATTGTAACTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TTTTTAAAAATAAATAATAATA
Found at i:67844201 original size:5 final size:5
Alignment explanation
Indices: 67844191--67844233 Score: 77
Period size: 5 Copynumber: 8.6 Consensus size: 5
67844181 TTACTAAACA
*
67844191 TATAT TATAT TGTAT TATAT TATAT TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TAT
67844234 TGTTGAAGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:67851423 original size:37 final size:37
Alignment explanation
Indices: 67851369--67851445 Score: 127
Period size: 37 Copynumber: 2.1 Consensus size: 37
67851359 CATAAATTAG
* *
67851369 AATATCTAAATTCGTATAATACATGGACAAAAATATT
1 AATATCTAAATTCGTATAATACAAGGACAAAAATAAT
*
67851406 AATATCTAAATTTGTATAATACAAGGACAAAAATAAT
1 AATATCTAAATTCGTATAATACAAGGACAAAAATAAT
67851443 AAT
1 AAT
67851446 TCAACTGGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.52, C:0.09, G:0.08, T:0.31
Consensus pattern (37 bp):
AATATCTAAATTCGTATAATACAAGGACAAAAATAAT
Found at i:67854063 original size:20 final size:19
Alignment explanation
Indices: 67854016--67854063 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
67854006 AAAAAGGAAC
*
67854016 CGAAGTGCAGACAGAGGCA
1 CGAAGTGCAAACAGAGGCA
*
67854035 CAAATGTGCAAACAGAGGCA
1 CGAA-GTGCAAACAGAGGCA
67854055 CTGAAGTGC
1 C-GAAGTGC
67854064 GATCCCGTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 3 0.12
20 19 0.79
21 2 0.08
ACGTcount: A:0.38, C:0.21, G:0.31, T:0.10
Consensus pattern (19 bp):
CGAAGTGCAAACAGAGGCA
Found at i:67858385 original size:27 final size:26
Alignment explanation
Indices: 67858351--67858469 Score: 125
Period size: 27 Copynumber: 4.4 Consensus size: 26
67858341 CCATAAAATA
* *
67858351 GGTAAAATGATCGTAATGCTCTTATAG
1 GGTAAAATGA-CGTAATGCCCTTGTAG
67858378 GGTAAAATGACTGTAATGCCCTTGTAG
1 GGTAAAATGAC-GTAATGCCCTTGTAG
*
67858405 GGTAAAATGACCGTAATGCCCATGTAG
1 GGTAAAATGA-CGTAATGCCCTTGTAG
* *
67858432 GGTAAAATAACCGTAACAT-CCC-TGTAT
1 GGTAAAATGA-CGT-A-ATGCCCTTGTAG
67858459 GGTAAAATGAC
1 GGTAAAATGAC
67858470 AATTATGCCC
Statistics
Matches: 82, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
26 2 0.02
27 73 0.89
28 5 0.06
29 2 0.02
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (26 bp):
GGTAAAATGACGTAATGCCCTTGTAG
Found at i:67858433 original size:54 final size:54
Alignment explanation
Indices: 67858351--67858469 Score: 143
Period size: 54 Copynumber: 2.2 Consensus size: 54
67858341 CCATAAAATA
* * * * *
67858351 GGTAAAATGATCGTAATGCTCTTATAGGGTAAAATGACTGT-A-ATGCCCTTGTAG
1 GGTAAAATGACCGTAATGCCCATATAGGGTAAAATAACCGTAACAT-CCC-TGTAG
* *
67858405 GGTAAAATGACCGTAATGCCCATGTAGGGTAAAATAACCGTAACATCCCTGTAT
1 GGTAAAATGACCGTAATGCCCATATAGGGTAAAATAACCGTAACATCCCTGTAG
67858459 GGTAAAATGAC
1 GGTAAAATGAC
67858470 AATTATGCCC
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
54 50 0.89
55 4 0.07
56 2 0.04
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (54 bp):
GGTAAAATGACCGTAATGCCCATATAGGGTAAAATAACCGTAACATCCCTGTAG
Found at i:67861859 original size:47 final size:47
Alignment explanation
Indices: 67861749--67862069 Score: 168
Period size: 47 Copynumber: 6.8 Consensus size: 47
67861739 ATGTTTGTGT
* * * *
67861749 GCTAGTGTAAGACATGTCTGGAACAT-GTATCGGCCA--AATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCAG-CATTAA-GATGAGA
* * *
67861795 GCCACTGTAAGACCATGTCTGGGACATGGCATCAGCATTAAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCAGCATTAAGATGAGA
* * * * *
67861843 GCTAGTGTAAGACATGTTTAGGACAT-TCATC-GACCTCT-TGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCAG-CAT-TAAGATG-AGA
* * ** * *
67861889 GCCAATGTAAGACATGTCTGGGACA-GGCATTGGC--T-ACATGATGT
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCAGCATTAAGATGA-GA
* * ** * *
67861933 G-TCAGTATAAGACCCTGTCTGGGACATGGCATCAGCACGGATACATGGGA
1 GCT-AGTGTAAGA-CATGTCTGGGACATGGCATCAGCA-TTA-AGATGAGA
* *
67861983 G-TCAGTGTAAGACTATGTGTGGGACATGGCATCAAC-TTAACG-TGAGA
1 GCT-AGTGTAAGAC-ATGTCTGGGACATGGCATCAGCATTAA-GATGAGA
67862030 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTA
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCAGCATTA
67862070 TACCCTATGT
Statistics
Matches: 208, Mismatches: 43, Indels: 46
0.70 0.14 0.15
Matches are distributed among these distances:
42 1 0.00
43 4 0.02
44 8 0.04
45 13 0.06
46 52 0.25
47 65 0.31
48 26 0.12
49 3 0.01
50 31 0.15
51 5 0.02
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCAGCATTAAGATGAGA
Found at i:67863641 original size:41 final size:41
Alignment explanation
Indices: 67863591--67863678 Score: 158
Period size: 41 Copynumber: 2.1 Consensus size: 41
67863581 GTGTGACGAC
*
67863591 TCCTGATAAGATAAATTGTGTTTTATTCATATAGTAAATGGA
1 TCCT-ATAAGATAAATTATGTTTTATTCATATAGTAAATGGA
67863633 TCCTATAAGATAAATTATGTTTTATTCATATAGTAAATGGA
1 TCCTATAAGATAAATTATGTTTTATTCATATAGTAAATGGA
67863674 TCCTA
1 TCCTA
67863679 ACGTAGCTAC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 41 0.91
42 4 0.09
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (41 bp):
TCCTATAAGATAAATTATGTTTTATTCATATAGTAAATGGA
Found at i:67869755 original size:47 final size:46
Alignment explanation
Indices: 67869591--67869764 Score: 147
Period size: 47 Copynumber: 3.7 Consensus size: 46
67869581 TCTTGATGTA
*
67869591 AGCCAATGTAAGA-CATGTCTGGGACAT-GCATCAACT-ACATGATG
1 AGCCAATGTAAGACCATGTCTGGGACATGGCATCGACTAACATGA-G
* * * * * * * *
67869635 TGTCAGTATAAGACCGTGTCTAGGACATGGCATCGGCACGGATACATGGG
1 AGCCAATGTAAGACCATGTCTGGGACATGGCATC-G-AC-TA-ACATGAG
* * * *
67869685 AGTCAGTGTAAAACCATGTCTGGGACATGGCATCGACTTAACGTGAG
1 AGCCAATGTAAGACCATGTCTGGGACATGGCATCGAC-TAACATGAG
*
67869732 AGCCAATGTAAGACCATGTCTGGGACATTGCAT
1 AGCCAATGTAAGACCATGTCTGGGACATGGCAT
67869765 TGGCATTATA
Statistics
Matches: 101, Mismatches: 22, Indels: 11
0.75 0.16 0.08
Matches are distributed among these distances:
44 9 0.09
45 12 0.12
46 5 0.05
47 34 0.34
48 5 0.05
49 1 0.01
50 30 0.30
51 5 0.05
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (46 bp):
AGCCAATGTAAGACCATGTCTGGGACATGGCATCGACTAACATGAG
Found at i:67876274 original size:20 final size:18
Alignment explanation
Indices: 67876233--67876274 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
67876223 TGAAAATAAG
*
67876233 CATTATTATTAGGTTTTA
1 CATTATTATTAGGATTTA
67876251 -ATTATTATTAGGAATTTA
1 CATTATTATTAGG-ATTTA
67876269 CCATTA
1 -CATTA
67876275 ATATACACAC
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
17 12 0.60
18 4 0.20
20 4 0.20
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.50
Consensus pattern (18 bp):
CATTATTATTAGGATTTA
Found at i:67878435 original size:14 final size:14
Alignment explanation
Indices: 67878416--67878443 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
67878406 CCTAACTTAA
67878416 AATTGATCAAAACT
1 AATTGATCAAAACT
67878430 AATTGATCAAAACT
1 AATTGATCAAAACT
67878444 TCTACTGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (14 bp):
AATTGATCAAAACT
Found at i:67887689 original size:27 final size:27
Alignment explanation
Indices: 67887658--67887834 Score: 160
Period size: 27 Copynumber: 6.5 Consensus size: 27
67887648 AAATTGTACA
* * * *
67887658 GCACTAAGGGTGCGACTCGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
67887685 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
67887712 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
67887739 GCACTAAGTGTGC-AAGTTGGACTATGTG
1 GCACTAAGTGTGCGAA-TT-GACTATGTG
* * * *
67887767 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAATTGACTATGTG
* * * *
67887794 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACTATGTG
*
67887821 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
67887835 GGCTCAATAA
Statistics
Matches: 126, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
26 2 0.02
27 100 0.79
28 23 0.18
29 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:67887798 original size:55 final size:54
Alignment explanation
Indices: 67887685--67887834 Score: 142
Period size: 55 Copynumber: 2.8 Consensus size: 54
67887675 CGACTATGTT
* * * *
67887685 GCACTAAGTGTGCGAA-ATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGC-AAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCA
* * * ** *
67887739 GCACTAAGTGTGCAAGTTGGACTATGTGGCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCAAGTT-GACTATATAGCACTAAGTGTGCGAATTGACCACGCA
* * *
67887794 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCAAGTTGACTATATAGCACTAAGTGTGCG
67887835 GGCTCAATAA
Statistics
Matches: 79, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
53 2 0.03
54 34 0.43
55 43 0.54
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.28
Consensus pattern (54 bp):
GCACTAAGTGTGCAAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCA
Found at i:67887825 original size:82 final size:82
Alignment explanation
Indices: 67887654--67887833 Score: 193
Period size: 82 Copynumber: 2.2 Consensus size: 82
67887644 GATTAAATTG
* * * * * *
67887654 TACAGCACTAAGGGTGCGA-CTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTA
1 TACAGCACTAAGTGTGCAAGTTGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTA
67887718 AGTGTGCGAATTGACCA
66 AGTGTGCGAATTGACCA
* * ** *
67887735 TGCGGCACTAAGTGTGCAAGTTGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCAAGTTGGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
67887799 AAGTGTGCGAGTTGATTA
65 AAGTGTGCGAATTGACCA
* *
67887817 TATAGCACTGAGTGTGC
1 TACAGCACTAAGTGTGC
67887834 GGGCTCAATA
Statistics
Matches: 79, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
81 16 0.20
82 63 0.80
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (82 bp):
TACAGCACTAAGTGTGCAAGTTGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTA
AGTGTGCGAATTGACCA
Found at i:67895666 original size:27 final size:27
Alignment explanation
Indices: 67895636--67895812 Score: 165
Period size: 27 Copynumber: 6.5 Consensus size: 27
67895626 AAATTGTACA
*
67895636 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTT
** * *
67895663 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGATTTGACTATGTT
* * **
67895690 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTT
*
67895717 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTT
* * * *
67895745 GCACTAAGTGTGCGATTTTATTACGTA
1 GCACTAAGTGTGCGATTTGACTATGTT
* * * * *
67895772 GCACTAAGTGTGTGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTT
*
67895799 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
67895813 GGCTCAACAT
Statistics
Matches: 125, Mismatches: 24, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
27 102 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTT
Found at i:67895803 original size:82 final size:81
Alignment explanation
Indices: 67895632--67895812 Score: 202
Period size: 82 Copynumber: 2.2 Consensus size: 81
67895622 GATTAAATTG
* * *
67895632 TACAGCACTAAGGGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
67895697 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** * *
67895713 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTTATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* * **
67895777 AAGTGTGTGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
67895795 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
67895813 GGCTCAACAT
Statistics
Matches: 81, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
81 17 0.21
82 64 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:67907464 original size:17 final size:17
Alignment explanation
Indices: 67907442--67907474 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
67907432 TGATGGTTGC
67907442 ATTTATTAATAACATGT
1 ATTTATTAATAACATGT
67907459 ATTTATTAATAACATG
1 ATTTATTAATAACATG
67907475 AAATTCTACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.45
Consensus pattern (17 bp):
ATTTATTAATAACATGT
Found at i:67916027 original size:30 final size:30
Alignment explanation
Indices: 67915991--67916078 Score: 131
Period size: 30 Copynumber: 2.9 Consensus size: 30
67915981 TCATCATATT
*
67915991 ACAAACTTTCAAGTATTTCGGGACCATAAC
1 ACAAACTTTCAAGTATTTCGGGATCATAAC
* * *
67916021 ACAAACTTTCAAGTATTTCAGGATTATATC
1 ACAAACTTTCAAGTATTTCGGGATCATAAC
*
67916051 ACAAACTTTCAATTATTTCGGGATCATA
1 ACAAACTTTCAAGTATTTCGGGATCATA
67916079 TAATTCATAT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.33
Consensus pattern (30 bp):
ACAAACTTTCAAGTATTTCGGGATCATAAC
Found at i:67916445 original size:23 final size:23
Alignment explanation
Indices: 67916405--67916450 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
67916395 GAGTTCAAGT
67916405 GAGCTATATCAGGAAGCCCATAA
1 GAGCTATATCAGGAAGCCCATAA
67916428 GAGCTTATATCAGG-AGCCCATAA
1 GAGC-TATATCAGGAAGCCCATAA
67916451 CAGATAACTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 13 0.59
24 9 0.41
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (23 bp):
GAGCTATATCAGGAAGCCCATAA
Found at i:67918011 original size:40 final size:40
Alignment explanation
Indices: 67917963--67918229 Score: 471
Period size: 40 Copynumber: 6.7 Consensus size: 40
67917953 GCAAACACAT
* *
67917963 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
67918003 TTGCCTTCGGGTCTTAGCCCGGATATATCATCCCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
67918043 TTGCCTTCGGGTCATAGCCCGGATATATCTACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
67918083 TTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
67918123 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
67918163 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
67918203 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
67918230 ATCCAATGTT
Statistics
Matches: 215, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 215 1.00
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:67926377 original size:40 final size:40
Alignment explanation
Indices: 67926329--67926595 Score: 462
Period size: 40 Copynumber: 6.7 Consensus size: 40
67926319 GCAAACACAT
* *
67926329 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
67926369 TTGCCTTCGGGTCTTAGCCCGGATATATCATCCCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
67926409 TTGCCTTCGGGTCATAGCCCGGATATATCTACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
67926449 TTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
67926489 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
67926529 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
67926569 TTGCCTTCGGGTCTTAGCTCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
67926596 ATCCAATGCT
Statistics
Matches: 214, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 214 1.00
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:67944625 original size:40 final size:40
Alignment explanation
Indices: 67944577--67944841 Score: 462
Period size: 40 Copynumber: 6.7 Consensus size: 40
67944567 GCAAACACAT
* *
67944577 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
67944617 TTGCCTTCGGGTCTTAGCCCGGATATATCATCCCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
67944657 TTGCCTTCGGGTCATAGCCCGGATATATC-ACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
67944696 TTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
67944736 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
67944776 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
67944816 TTGCCTTCGGGTCTTAG-CCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
67944842 ATCCAATGCT
Statistics
Matches: 214, Mismatches: 10, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
39 44 0.21
40 170 0.79
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:67944753 original size:119 final size:120
Alignment explanation
Indices: 67944577--67944841 Score: 462
Period size: 119 Copynumber: 2.2 Consensus size: 120
67944567 GCAAACACAT
* *
67944577 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
*
67944642 TATCATCCCGCATAATTGCCTTCGGGTCATAGCCCGGATATATC-ACTCGCATAA
66 TATCAACCCGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
*
67944696 TTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
* *
67944761 TATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
66 TATCAACCCGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
67944816 TTGCCTTCGGGTCTTAG-CCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
67944842 ATCCAATGCT
Statistics
Matches: 138, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
119 111 0.80
120 27 0.20
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.30
Consensus pattern (120 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
TATCAACCCGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
Found at i:67957172 original size:119 final size:120
Alignment explanation
Indices: 67956990--67957212 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
67956980 TCCTCGTTCA
*
67956990 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
67957055 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
67957110 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
67957172 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
67957213 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:67957212 original size:40 final size:40
Alignment explanation
Indices: 67956988--67957212 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
67956978 GCTCCTCGTT
* *
67956988 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
67957028 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
67957068 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
67957108 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
67957147 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
67957188 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67957213 CATCATTCAA
Statistics
Matches: 164, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 119 0.73
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:67962914 original size:27 final size:27
Alignment explanation
Indices: 67962883--67963060 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
67962873 TAAATTGTAC
67962883 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
67962910 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67962936 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
67962964 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
67962992 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
67963019 AGCACTAAGTGTGTGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
67963046 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67963061 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:67963051 original size:82 final size:81
Alignment explanation
Indices: 67962880--67963060 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
67962870 GATTAAATTG
* *
67962880 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
67962945 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
67962961 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* * **
67963025 AAGTGTGTGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
67963043 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
67963061 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:67968585 original size:119 final size:120
Alignment explanation
Indices: 67968403--67968625 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
67968393 TCCTCGTTCA
*
67968403 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
67968468 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
67968523 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
67968585 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
67968626 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:67968625 original size:40 final size:40
Alignment explanation
Indices: 67968401--67968625 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
67968391 GCTCCTCGTT
* *
67968401 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
67968441 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
67968481 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
67968521 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
67968560 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
67968601 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67968626 CATCATTCAA
Statistics
Matches: 164, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 119 0.73
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:67973102 original size:47 final size:48
Alignment explanation
Indices: 67972978--67973106 Score: 147
Period size: 49 Copynumber: 2.7 Consensus size: 48
67972968 CTCGCACACT
* * * *
67972978 AAGTGCCAATATCATGGCCCGAAGCCAACTCAATATATCTCGCATCCA
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATATAGCTCACACCCA
* * *
67973026 AAGTGCTAATATC-TGGGGCCCGAACCCAAATCAATGA-AGCTCACACCCG
1 AAGTGCCAATATCAT--GGCCCGAAGCCAAATCAAT-ATAGCTCACACCCA
67973075 AAGTGCCAATA-CATGGCCCGAAGCCAAATCAA
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAA
67973107 AGTATCCCCT
Statistics
Matches: 68, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
47 18 0.26
48 13 0.19
49 36 0.53
50 1 0.01
ACGTcount: A:0.35, C:0.30, G:0.18, T:0.17
Consensus pattern (48 bp):
AAGTGCCAATATCATGGCCCGAAGCCAAATCAATATAGCTCACACCCA
Found at i:67973691 original size:21 final size:22
Alignment explanation
Indices: 67973648--67973692 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
67973638 AACTTGTATA
* *
67973648 TCTATCAACAAGCATTCATAAC
1 TCTATCAACAAACATTCAAAAC
*
67973670 TCTATCAAGAAAC-TTCAAAAC
1 TCTATCAACAAACATTCAAAAC
67973691 TC
1 TC
67973693 ATGCTTATTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.42, C:0.27, G:0.04, T:0.27
Consensus pattern (22 bp):
TCTATCAACAAACATTCAAAAC
Found at i:67980519 original size:21 final size:21
Alignment explanation
Indices: 67980485--67980531 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
67980475 GTGGCTCAGA
* *
67980485 ACATGGCCGTGTGGCTACTCC
1 ACATGCCCGAGTGGCTACTCC
* *
67980506 ACATGCCCGAGTGGCTATTTC
1 ACATGCCCGAGTGGCTACTCC
67980527 ACATG
1 ACATG
67980532 TCTGTGTACT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.30, G:0.26, T:0.26
Consensus pattern (21 bp):
ACATGCCCGAGTGGCTACTCC
Done.