Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 208 of 333
Found at i:67983869 original size:12 final size:14
Alignment explanation
Indices: 67983852--67983883 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
67983842 ATGAGAACAC
67983852 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
67983864 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
67983878 ATGTGT
1 ATGTGT
67983884 TTAAGATAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:67984154 original size:100 final size:100
Alignment explanation
Indices: 67983905--67984231 Score: 422
Period size: 100 Copynumber: 3.3 Consensus size: 100
67983895 TTAGGTTATG
* * * *
67983905 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
* * * * * * ***
67983970 GCGGGCTACTATGCGTACCCGATAGTTTCA-ATCATG
66 GCAGGCTACTATGTGTACCAGATTG-AT-AGGTCGCA
* *
67984006 TGTGTAGTACTAAGTGTAGGCTACTACATGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
67984071 GCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
66 GCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
* * * *
67984106 TATGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAGTCACGTGTGTAGTACTAAAT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
* * *
67984171 GTAGGCTACTACGTGTACCAGATTGATAGGTTGCA
66 GCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
*
67984206 TGTGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
67984232 TACGTACCAG
Statistics
Matches: 199, Mismatches: 26, Indels: 3
0.87 0.11 0.01
Matches are distributed among these distances:
99 1 0.01
100 118 0.59
101 80 0.40
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (100 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
GCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
Found at i:67984242 original size:50 final size:50
Alignment explanation
Indices: 67983905--67984231 Score: 368
Period size: 50 Copynumber: 6.5 Consensus size: 50
67983895 TTAGGTTATG
*
67983905 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
* * * * * * * ***
67983955 TGTGTAGTACTAAGTGCGGGCTACTATGCGTACCCGATAGTTTCA-ATCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-AT-AGGTCGCA
* * * * * * *
67984006 TGTGTAGTACTAAGTGTAGGCTACTACATGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
*
67984056 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
* * * * * *
67984106 TATGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
* * *
67984156 TGTGTAGTACTAAATGTAGGCTACTACGTGTACCAGATTGATAGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
*
67984206 TGTGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
67984232 TACGTACCAG
Statistics
Matches: 230, Mismatches: 44, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
49 1 0.00
50 192 0.83
51 36 0.16
52 1 0.00
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
Found at i:67985376 original size:17 final size:17
Alignment explanation
Indices: 67985354--67985397 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
67985344 GTGAAATTAT
67985354 GAATGCCTAATTGTAAC
1 GAATGCCTAATTGTAAC
67985371 GAATGCCTAATTGTAAC
1 GAATGCCTAATTGTAAC
* *
67985388 TAATGACTAA
1 GAATGCCTAA
67985398 ATGAGCACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.30
Consensus pattern (17 bp):
GAATGCCTAATTGTAAC
Found at i:67985817 original size:94 final size:95
Alignment explanation
Indices: 67985699--67985919 Score: 250
Period size: 94 Copynumber: 2.4 Consensus size: 95
67985689 TTTATGTGAG
* * * * *
67985699 AGCCAGTGTAAGACCATGTTTGGGACCTAGCATCGACATTGAGACAAGGGCTAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATAGCATCGACATAGAAACAAGGGCCAGTGTAAGACGTG
* *
67985764 TCTGGGACATGTATCAGCCAC-ATTATGAT
66 TCTGGGACATGCATCAGCCACAATGATGAT
* * * * * ** *
67985793 AGCCAGTGCAAGACCATGTCTGGGATATGGCATCGGCGTAGAAATGAGTGCCAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATAGCATCGACATAGAAACAAGGGCCAGTGTAAGACGTG
* *
67985858 TCTGGGACATGCATCAGCCTCAATGATGGT
66 TCTGGGACATGCATCAGCCACAATGATGAT
**
67985888 AGCCAGTGTAAGA-TGTGTCTGGGACATA-CATC
1 AGCCAGTGTAAGACCATGTCTGGGACATAGCATC
67985920 AGTTAAGCTT
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
93 4 0.04
94 82 0.79
95 18 0.17
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (95 bp):
AGCCAGTGTAAGACCATGTCTGGGACATAGCATCGACATAGAAACAAGGGCCAGTGTAAGACGTG
TCTGGGACATGCATCAGCCACAATGATGAT
Found at i:67985860 original size:47 final size:46
Alignment explanation
Indices: 67985751--67985921 Score: 159
Period size: 47 Copynumber: 3.7 Consensus size: 46
67985741 GACAAGGGCT
* * * *
67985751 AGTGTAAGACGTGTCTGGGACATGTATCAGCC-ACATTATGATAGCC
1 AGTGTAAGACGTGTCTGGGACATGCATCAGCCTAAATGA-GGTAGCC
* * * * *
67985797 AGTGCAAGACCATGTCTGGGATATGGCATCGGCGTAGAAATGA-GT-GCC
1 AGTGTAAGA-CGTGTCTGGGACAT-GCATCAGCCT--AAATGAGGTAGCC
*
67985845 AGTGTAAGACGTGTCTGGGACATGCATCAGCCTCAATGATGGTAGCC
1 AGTGTAAGACGTGTCTGGGACATGCATCAGCCTAAATGA-GGTAGCC
* *
67985892 AGTGTAAGATGTGTCTGGGACATACATCAG
1 AGTGTAAGACGTGTCTGGGACATGCATCAG
67985922 TTAAGCTTCG
Statistics
Matches: 100, Mismatches: 17, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
44 5 0.05
46 18 0.18
47 55 0.55
48 17 0.17
49 1 0.01
51 4 0.04
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACGTGTCTGGGACATGCATCAGCCTAAATGAGGTAGCC
Found at i:67989492 original size:46 final size:46
Alignment explanation
Indices: 67989425--67989594 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
67989415 AACCCGCCCC
* *
67989425 TAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGTATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCATTCGTATCCA
* * *
67989471 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGCCTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCATTCGTA--TCCA
* * * *
67989517 TCTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCATTCGTATCCA
* *
67989564 TAGGTGAACTCAGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
67989595 GGATGCTCAA
Statistics
Matches: 101, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
44 4 0.04
45 3 0.03
46 58 0.57
47 29 0.29
48 3 0.03
49 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCATTCGTATCCA
Found at i:67989542 original size:93 final size:93
Alignment explanation
Indices: 67989430--67989600 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
67989420 GCCCCTAAGT
* * * *
67989430 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
67989495 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
67989523 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAGGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
67989588 CGAGTTCGGATGC
66 CGAGTTCGGATGC
67989601 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67990052 original size:30 final size:30
Alignment explanation
Indices: 67990018--67990077 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
67990008 ATTTAATACG
67990018 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * * *
67990048 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
67990078 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:67990283 original size:24 final size:25
Alignment explanation
Indices: 67990250--67990308 Score: 86
Period size: 24 Copynumber: 2.4 Consensus size: 25
67990240 GCACAAGTTG
*
67990250 TCTAACATAATTTAAAA-TCTCATAT
1 TCTATCATAATTTAAAACT-TCATAT
67990275 TCTAT-ATAATTTAAAACTTCATAT
1 TCTATCATAATTTAAAACTTCATAT
67990299 TCTATCATAA
1 TCTATCATAA
67990309 AACATAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 22 0.71
25 9 0.29
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (25 bp):
TCTATCATAATTTAAAACTTCATAT
Found at i:67994283 original size:22 final size:24
Alignment explanation
Indices: 67994243--67994299 Score: 100
Period size: 22 Copynumber: 2.5 Consensus size: 24
67994233 GAATGAGTCT
67994243 AGCAATAACATCGGGATCAATCAA
1 AGCAATAACATCGGGATCAATCAA
67994267 AGCAATAAC-T-GGGATCAATCAA
1 AGCAATAACATCGGGATCAATCAA
67994289 AGCAATAACAT
1 AGCAATAACAT
67994300 TAGTATCATA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
22 21 0.66
23 2 0.06
24 9 0.28
ACGTcount: A:0.47, C:0.19, G:0.16, T:0.18
Consensus pattern (24 bp):
AGCAATAACATCGGGATCAATCAA
Found at i:67997179 original size:93 final size:93
Alignment explanation
Indices: 67997072--67997242 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
67997062 GCCCCTAAGT
****
67997072 GAACTCGGACTCAACTCAACAAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
67997137 CAAGTTTGGATGCCTAGTTACATCTCAC
66 CAAGTTCGGATGCCTAGTTACATCTCAC
* * *
67997165 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
67997230 CGAGTTCGGATGC
66 CAAGTTCGGATGC
67997243 TCAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67997694 original size:29 final size:30
Alignment explanation
Indices: 67997662--67997720 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
67997652 ATTTAATACG
67997662 AACTTTGGAAAAATTACAC-TTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
67997691 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
67997721 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:68002897 original size:47 final size:46
Alignment explanation
Indices: 68002783--68002911 Score: 149
Period size: 47 Copynumber: 2.8 Consensus size: 46
68002773 GTTATGTGAA
68002783 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAAATTGAGACG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAAATTGAGACG
* * *
68002829 AGGGCTAGTGTAAGA-CGTGTCTGGGACAT-GCATCAGCCACATT-ACGAC-
1 A--GCCAGTGTAAGACCATGTCTGGGACATGGCATC-G--AAATTGA-GACG
68002877 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
68002912 GCGTAGAGAT
Statistics
Matches: 70, Mismatches: 5, Indels: 15
0.78 0.06 0.17
Matches are distributed among these distances:
46 17 0.24
47 28 0.40
48 18 0.26
49 7 0.10
ACGTcount: A:0.28, C:0.22, G:0.30, T:0.20
Consensus pattern (46 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAAATTGAGACG
Found at i:68002933 original size:48 final size:47
Alignment explanation
Indices: 68002783--68002938 Score: 133
Period size: 48 Copynumber: 3.3 Consensus size: 47
68002773 GTTATGTGAA
** *
68002783 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAAATTGAG--ACG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCG-GCTAGAGATACG
* * * * * *
68002829 AGGGCTAGTGTAAGA-CGTGTCTGGGACAT-GCATCAGCCACA-TTACG
1 A--GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAGAGATACG
68002875 ACAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTAGAGATACG
1 --AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TAGAGATACG
*
68002925 TGCCAGTGTAAGAC
1 AGCCAGTGTAAGAC
68002939 GTGGCTAGGA
Statistics
Matches: 85, Mismatches: 15, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
45 1 0.01
46 20 0.24
47 26 0.31
48 32 0.38
49 2 0.02
50 4 0.05
ACGTcount: A:0.28, C:0.21, G:0.31, T:0.20
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAGAGATACG
Found at i:68002950 original size:94 final size:94
Alignment explanation
Indices: 68002783--68002955 Score: 249
Period size: 94 Copynumber: 1.8 Consensus size: 94
68002773 GTTATGTGAA
* *
68002783 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAAATTGAGACGAGGGCTAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAAATAGAGACGAGGGCCAGTGTAAGACGTG
* *
68002848 TCTGGGACATGCATCAGCCACATTACGAC
66 GCTAGGACATGCATCAGCCACATTACGAC
*** * *
68002877 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTAGAGA-TACGTGCCAGTGTAAGACGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAAATAGAGACGA-GGGCCAGTGTAAGACGT
68002941 GGCTAGGACATGCAT
65 GGCTAGGACATGCAT
68002956 TGGCCTTAAT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
93 1 0.01
94 68 0.99
ACGTcount: A:0.28, C:0.21, G:0.31, T:0.20
Consensus pattern (94 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAAATAGAGACGAGGGCCAGTGTAAGACGTG
GCTAGGACATGCATCAGCCACATTACGAC
Found at i:68019693 original size:40 final size:40
Alignment explanation
Indices: 68019646--68019830 Score: 309
Period size: 40 Copynumber: 4.6 Consensus size: 40
68019636 ACTACTTGCT
*
68019646 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
68019686 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
68019726 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
68019766 CAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
68019806 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
68019831 TTATCATCCG
Statistics
Matches: 137, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 1 0.01
40 136 0.99
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:68026088 original size:50 final size:50
Alignment explanation
Indices: 68025965--68026403 Score: 389
Period size: 50 Copynumber: 8.7 Consensus size: 50
68025955 GAGAACATAT
* * *
68025965 TGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGTCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGTTAGGTCACGTG
* * *
68026017 TGTAGTACGAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTG
* * * * * * * * *
68026067 TGTAATACTAAGCGCACGCTACTATGCGTACCTGATAGTTTCGATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGTCACGTG
* * * *
68026118 TGTAGTACTAAGTGCAGGCTACGATGTGTATCAGATGGTTAGGTCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTG
* * * *
68026168 TGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGATAGGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTG
* * * * * * *
68026218 TGTAGTACTAAGTGTAGGCTATTATGCGTACCA-ATTAACTTCGATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAGGTCACGTG
* * * * *
68026269 TGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAGCCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTG
* * * * *
68026319 TGTAGTACTAAGTGCAGGCTACTACATCTACCAGATTGATAGGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTG
* * * * *
68026369 TGCAGTACAAAGTACAGGCTACTATGCGTACCAGA
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
68026404 GAGCTTCGGT
Statistics
Matches: 307, Mismatches: 74, Indels: 14
0.78 0.19 0.04
Matches are distributed among these distances:
48 3 0.01
49 6 0.02
50 198 0.64
51 73 0.24
52 27 0.09
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTG
Found at i:68026147 original size:101 final size:99
Alignment explanation
Indices: 68026009--68026403 Score: 369
Period size: 101 Copynumber: 3.9 Consensus size: 99
68025999 ACAGTTTTAG
* * *
68026009 GTCACGTGTGTAGTACGAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAATA
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTA
* * * * *
68026074 CTAAGCGCACGCTACTATGCGTACCTGATAGTTTC
66 CTAAGTGCAGGCTACTACGCGTACCAGATAG-TTA
* * * * *
68026109 GATCACGTGTGTAGTACTAAGTGCAGGCTACGATGTGTATCAGATGGTTAGGTCACGTGTGTAGT
1 G-TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGT
* * * *
68026174 ACTAAGTGCAGGCTACTACGTGTACCGGATTGATA
65 ACTAAGTGCAGGCTACTACGCGTACCAGATAGTTA
* * * * * * * * * *
68026209 GGTCGCATGTGTAGTACTAAGTGTAGGCTATTATGCGTACCA-ATTAACTTCGATCACGTGTGTA
1 -GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAGGTCACATGTGTA
* * * *
68026273 GTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAA
63 GTACTAAGTGCAGGCTACTACGCGTACCAGATAG-TTA
* * * * * *
68026311 GCCACGTGTGTAGTACTAAGTGCAGGCTACTACATCTACCAGATTGATAGGTCGCATGTGCAGTA
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTA
* * *
68026376 CAAAGTACAGGCTACTATGCGTACCAGA
66 CTAAGTGCAGGCTACTACGCGTACCAGA
68026404 GAGCTTCGGT
Statistics
Matches: 236, Mismatches: 53, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
99 2 0.01
100 71 0.30
101 159 0.67
102 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (99 bp):
GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTA
CTAAGTGCAGGCTACTACGCGTACCAGATAGTTA
Found at i:68026244 original size:151 final size:151
Alignment explanation
Indices: 68025965--68026401 Score: 606
Period size: 151 Copynumber: 2.9 Consensus size: 151
68025955 GAGAACATAT
* * * * * *
68025965 TGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAGTTTTAGGTCACGTGTGTAGTACGAAGT
1 TGTAGTACTAAGTGCAGGCTACTATGTGTATCAGA-TG-GTTAGGTCACGTGTGTAGTACTAAGT
* * * *
68026030 GCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAATACTAAGCGCACGCTACTATGCG
64 GCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
* **
68026095 TACCTGA-TAGTTTCGATCACGTG
129 TACC-AATTAACTTCGATCACGTG
*
68026118 TGTAGTACTAAGTGCAGGCTACGATGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGC
1 TGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGC
* * *
68026183 AGGCTACTACGTGTACCGGATTGATAGGTCGCATGTGTAGTACTAAGTGTAGGCTATTATGCGTA
66 AGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA
68026248 CCAATTAACTTCGATCACGTG
131 CCAATTAACTTCGATCACGTG
* * * *
68026269 TGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAGCCACGTGTGTAGTACTAAGTGC
1 TGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGC
* * * * *
68026334 AGGCTACTACATCTACCAGATTGATAGGTCGCATGTGCAGTACAAAGTACAGGCTACTATGCGTA
66 AGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA
68026399 CCA
131 CCA
68026402 GAGAGCTTCG
Statistics
Matches: 253, Mismatches: 30, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
150 1 0.00
151 220 0.87
152 1 0.00
153 31 0.12
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (151 bp):
TGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGC
AGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA
CCAATTAACTTCGATCACGTG
Found at i:68034546 original size:43 final size:43
Alignment explanation
Indices: 68034498--68034595 Score: 126
Period size: 43 Copynumber: 2.3 Consensus size: 43
68034488 CTTACATGTT
*
68034498 ATCACATATCGATGCCACTGTCCCACACAGGGTCTTACACGAA
1 ATCACATATCGATGCCAATGTCCCACACAGGGTCTTACACGAA
* * * * *
68034541 ATCACA-ATACAATGCCAATGTCCCAGACATGGTCTTACATGTA
1 ATCACATAT-CGATGCCAATGTCCCACACAGGGTCTTACACGAA
68034584 ATCACATATCGA
1 ATCACATATCGA
68034596 GTCGATGCCA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
42 2 0.04
43 42 0.91
44 2 0.04
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.23
Consensus pattern (43 bp):
ATCACATATCGATGCCAATGTCCCACACAGGGTCTTACACGAA
Found at i:68034707 original size:95 final size:97
Alignment explanation
Indices: 68034552--68034728 Score: 272
Period size: 95 Copynumber: 1.8 Consensus size: 97
68034542 TCACAATACA
*
68034552 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCGAGTCGATGCCATGTCCCAGACA
1 ATGCCAATGTCCCAGACATGGTCTTACATG-AATCACATATCAAGTCGATGCCATGTCCCAGACA
*
68034617 TGGTCTTACACTGGCTCTCCTCTTTCCGTGCCG
65 TGGTCTTACACTAGCTCTCCTCTTTCCGTGCCG
68034650 ATGCC-ATGTCCCAGACATGGTCTTACACTG-A-CACATATCAAG-CTGATGCCATGTCCCAGAC
1 ATGCCAATGTCCCAGACATGGTCTTACA-TGAATCACATATCAAGTC-GATGCCATGTCCCAGAC
*
68034711 ATGGTTTTACACTAGCTC
64 ATGGTCTTACACTAGCTC
68034729 ACATGTATTG
Statistics
Matches: 74, Mismatches: 3, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
94 1 0.01
95 43 0.58
96 1 0.01
97 22 0.30
98 7 0.09
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (97 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGAATCACATATCAAGTCGATGCCATGTCCCAGACAT
GGTCTTACACTAGCTCTCCTCTTTCCGTGCCG
Found at i:68034713 original size:45 final size:46
Alignment explanation
Indices: 68034552--68034723 Score: 170
Period size: 50 Copynumber: 3.6 Consensus size: 46
68034542 TCACAATACA
68034552 ATGCCAATGTCCCAGACATGGTCTTACA-TGTAATCACATATCGAG-TCG
1 ATGCC-ATGTCCCAGACATGGTCTTACACTG-AA-CACATATCGAGCT-G
** * * * * *
68034600 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCCTCTTTCCGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-GAAC-AC-ATAT-CGAGCTG
*
68034650 ATGCCATGTCCCAGACATGGTCTTACACTG-ACACATATCAAGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGAACACATATCGAGCTG
*
68034695 ATGCCATGTCCCAGACATGGTTTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
68034724 AGCTCACATG
Statistics
Matches: 103, Mismatches: 15, Indels: 15
0.77 0.11 0.11
Matches are distributed among these distances:
45 32 0.31
46 2 0.02
47 24 0.23
48 8 0.08
49 4 0.04
50 33 0.32
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGAACACATATCGAGCTG
Found at i:68037709 original size:18 final size:18
Alignment explanation
Indices: 68037697--68037732 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
68037687 CAAAATTGAT
68037697 ATTTTTGCTAAAATTCAC
1 ATTTTTGCTAAAATTCAC
68037715 ATTTTTGCTAAAATTCAC
1 ATTTTTGCTAAAATTCAC
68037733 TTAACAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.06, T:0.44
Consensus pattern (18 bp):
ATTTTTGCTAAAATTCAC
Found at i:68043060 original size:82 final size:79
Alignment explanation
Indices: 68042899--68043062 Score: 274
Period size: 82 Copynumber: 2.0 Consensus size: 79
68042889 ATCATCATAA
* *
68042899 CAATTCCTCACCACATATTATAGTTATCAAGATTTGGCATATTAGTACATTTGGAGAACCATACC
1 CAATTCCTCACCACATATTATAGTTATCAAGATTTGGCATATTAGTACATTTGAAGAACCATACA
68042964 ATCAAGACATTTTC
66 ATCAAGACATTTTC
*
68042978 CAATTCCTCACCACATATTATAGTTGATTAAGATTTGGCATATTAGTACATTTATGAAGAACCAT
1 CAATTCCTCACCACATATTATAGTT-ATCAAGATTTGGCATATTAGTACA-TT-TGAAGAACCAT
68043043 ACAATCAAGACATTTTC
63 ACAATCAAGACATTTTC
68043060 CAA
1 CAA
68043063 ACCAAAGTAA
Statistics
Matches: 79, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
79 25 0.32
80 23 0.29
81 2 0.03
82 29 0.37
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.33
Consensus pattern (79 bp):
CAATTCCTCACCACATATTATAGTTATCAAGATTTGGCATATTAGTACATTTGAAGAACCATACA
ATCAAGACATTTTC
Found at i:68044350 original size:99 final size:104
Alignment explanation
Indices: 68044112--68044369 Score: 305
Period size: 112 Copynumber: 2.4 Consensus size: 104
68044102 ATGTTTAAAA
* *
68044112 CAAAAAACGTGTTATTTGTTTCTTGAATGGTAAAATGTCTATATAAAATTTTAAGAAACTTATTT
1 CAAAAAA-GTGTTATTTGCTTCTTGAATGGTAAAATGTCTATCTAAAATTTTAAGAAACTTATTT
68044177 AAAATTCAACAAAACTATAAATATATAAAAAGTTTCAAAAACT
65 AAAATT--AC-AAACTATAAATATATAAAAAGTTTCAAAAACT
68044220 CAAAAAAAAAATGTGTTATTTGCTTCTTGAATGGTAAAATGTCTATCTAAAATTTTAAGAAA-TT
1 C----AAAAAA-GTGTTATTTGCTTCTTGAATGGTAAAATGTCTATCTAAAATTTTAAGAAACTT
***
68044284 CATTTAAAAGTT-C-AA-TA-AAAT-TATAAAAAGTTTCAAATGTT
61 -ATTTAAAA-TTACAAACTATAAATATATAAAAAGTTTCAAAAACT
* *
68044325 CAAAAAA-TGTTAGTTGCTTCTTGAATGATAAAATGTCTATCTAAA
1 CAAAAAAGTGTTATTTGCTTCTTGAATGGTAAAATGTCTATCTAAA
68044370 GTTTGAAGGA
Statistics
Matches: 136, Mismatches: 8, Indels: 21
0.82 0.05 0.13
Matches are distributed among these distances:
99 36 0.26
101 6 0.04
105 18 0.13
106 4 0.03
107 2 0.01
108 3 0.02
110 1 0.01
111 2 0.01
112 62 0.46
113 2 0.01
ACGTcount: A:0.45, C:0.09, G:0.10, T:0.36
Consensus pattern (104 bp):
CAAAAAAGTGTTATTTGCTTCTTGAATGGTAAAATGTCTATCTAAAATTTTAAGAAACTTATTTA
AAATTACAAACTATAAATATATAAAAAGTTTCAAAAACT
Found at i:68050429 original size:21 final size:19
Alignment explanation
Indices: 68050403--68050442 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
68050393 TTATTATTTT
68050403 CAATTAAATTATATATTATAA
1 CAATT-AATT-TATATTATAA
*
68050424 CAATTAATTTTTATTATAA
1 CAATTAATTTATATTATAA
68050443 TTATTTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 4 0.22
21 5 0.28
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (19 bp):
CAATTAATTTATATTATAA
Found at i:68051248 original size:17 final size:17
Alignment explanation
Indices: 68051226--68051264 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
68051216 ATCATCAAAA
68051226 TAATAATAATAA-ATATT
1 TAATAA-AATAATATATT
68051243 TAATAAAATAATATATT
1 TAATAAAATAATATATT
*
68051260 AAATA
1 TAATA
68051265 TTTTTTAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TAATAAAATAATATATT
Found at i:68052188 original size:77 final size:77
Alignment explanation
Indices: 68052096--68052250 Score: 310
Period size: 77 Copynumber: 2.0 Consensus size: 77
68052086 AAACTTAGAA
68052096 AATAAGTTGAGGATGTTTGTGGGAATTAACCTTATTTTTTGTTTTCTTTTTTGGTAAGTAATATT
1 AATAAGTTGAGGATGTTTGTGGGAATTAACCTTATTTTTTGTTTTCTTTTTTGGTAAGTAATATT
68052161 CATCAATCAAAT
66 CATCAATCAAAT
68052173 AATAAGTTGAGGATGTTTGTGGGAATTAACCTTATTTTTTGTTTTCTTTTTTGGTAAGTAATATT
1 AATAAGTTGAGGATGTTTGTGGGAATTAACCTTATTTTTTGTTTTCTTTTTTGGTAAGTAATATT
68052238 CATCAATCAAAT
66 CATCAATCAAAT
68052250 A
1 A
68052251 TGTTGAAGAG
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 78 1.00
ACGTcount: A:0.29, C:0.08, G:0.17, T:0.46
Consensus pattern (77 bp):
AATAAGTTGAGGATGTTTGTGGGAATTAACCTTATTTTTTGTTTTCTTTTTTGGTAAGTAATATT
CATCAATCAAAT
Found at i:68074757 original size:21 final size:22
Alignment explanation
Indices: 68074717--68074761 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
68074707 TCGAGACCTG
68074717 GTAAAAGGTATCAATACTTTTT
1 GTAAAAGGTATCAATACTTTTT
* *
68074739 GTAAAA-GTATCGATGCTTTTT
1 GTAAAAGGTATCAATACTTTTT
68074760 GT
1 GT
68074762 GTAATCTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (22 bp):
GTAAAAGGTATCAATACTTTTT
Found at i:68077291 original size:45 final size:45
Alignment explanation
Indices: 68077231--68077438 Score: 197
Period size: 45 Copynumber: 4.6 Consensus size: 45
68077221 GCAGATAAGC
* *
68077231 TGCTAGTACGGTGTGGATAAACCACTCATTGGTGTAGATAAAAAT
1 TGCTAATACGGTGTGGATAAACCACTCATTGATGTAGATAAAAAT
* ** **
68077276 TGCTAGTACAATGTGGATAAACCACTCATTGATGTAGATAAATGCT
1 TGCTAATACGGTGTGGATAAACCACTCATTGATGTAGATAAA-AAT
* * ** * **
68077322 T-TTAATATGGTGTGGATAAACCACTCATTGATACATATAAAAGC
1 TGCTAATACGGTGTGGATAAACCACTCATTGATGTAGATAAAAAT
* **
68077366 TGCTAATACGGTGTGGATAAACCACTCATTGGTGTTA-ATAAAAGC
1 TGCTAATACGGTGTGGATAAACCACTCATTGATG-TAGATAAAAAT
* * *
68077411 TAC-AATACAGTATGGATAAACCACTCAT
1 TGCTAATACGGTGTGGATAAACCACTCAT
68077439 CCATATAGAT
Statistics
Matches: 136, Mismatches: 24, Indels: 7
0.81 0.14 0.04
Matches are distributed among these distances:
44 24 0.18
45 109 0.80
46 3 0.02
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.29
Consensus pattern (45 bp):
TGCTAATACGGTGTGGATAAACCACTCATTGATGTAGATAAAAAT
Found at i:68077407 original size:90 final size:89
Alignment explanation
Indices: 68077237--68077456 Score: 235
Period size: 90 Copynumber: 2.4 Consensus size: 89
68077227 AAGCTGCTAG
* ** * *
68077237 TACGGTGTGGATAAACCACTCATTGGTGTAGATAAAAATTGCTAGTACAATGTGGATAAACCACT
1 TACGGTGTGGATAAACCACTCATTGATACAGATAAAAACTGCTAATACAATGTGGATAAACCACT
* **
68077302 CATTGATGTAGATAAATGCTTTTAA
66 CATTGATGTAGATAAAAGC-TACAA
* * * **
68077327 TATGGTGTGGATAAACCACTCATTGATACATATAAAAGCTGCTAATACGGTGTGGATAAACCACT
1 TACGGTGTGGATAAACCACTCATTGATACAGATAAAAACTGCTAATACAATGTGGATAAACCACT
*
68077392 CATTGGTGTTA-ATAAAAGCTACAA
66 CATTGATG-TAGATAAAAGCTACAA
* * ** *
68077416 TACAGTATGGATAAACCACTCATCCATATAGATAAACAACT
1 TACGGTGTGGATAAACCACTCATTGATACAGATAAA-AACT
68077457 TATATGGTGT
Statistics
Matches: 106, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
89 32 0.30
90 72 0.68
91 2 0.02
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.29
Consensus pattern (89 bp):
TACGGTGTGGATAAACCACTCATTGATACAGATAAAAACTGCTAATACAATGTGGATAAACCACT
CATTGATGTAGATAAAAGCTACAA
Found at i:68077588 original size:34 final size:34
Alignment explanation
Indices: 68077531--68077627 Score: 106
Period size: 34 Copynumber: 2.9 Consensus size: 34
68077521 ATCCCCGCCC
* **
68077531 ATACAATA-CAATATGACATGCTTATAGTAGATCA
1 ATACAGTAGCAATA-GACATGCTTATAACAGATCA
* * *
68077565 ATACGGTAGTAATAGACATGCTTATAACATATCA
1 ATACAGTAGCAATAGACATGCTTATAACAGATCA
* *
68077599 ATACAGTAGCAATAAACATGCTTACAACA
1 ATACAGTAGCAATAGACATGCTTATAACA
68077628 AGTTAGTACG
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
34 48 0.92
35 4 0.08
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.27
Consensus pattern (34 bp):
ATACAGTAGCAATAGACATGCTTATAACAGATCA
Found at i:68077904 original size:14 final size:14
Alignment explanation
Indices: 68077885--68077911 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
68077875 TAGAACAATT
68077885 CTCAAAATTATGGA
1 CTCAAAATTATGGA
68077899 CTCAAAATTATGG
1 CTCAAAATTATGG
68077912 GCAAAACTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (14 bp):
CTCAAAATTATGGA
Found at i:68080580 original size:16 final size:16
Alignment explanation
Indices: 68080559--68080590 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
68080549 TCGAGTTGAG
*
68080559 AAAATTATTTAATTTA
1 AAAATTAATTAATTTA
68080575 AAAATTAATTAATTTA
1 AAAATTAATTAATTTA
68080591 TGATGTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
AAAATTAATTAATTTA
Found at i:68083996 original size:5 final size:5
Alignment explanation
Indices: 68083986--68084021 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
68083976 GATACCAACC
68083986 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA A
68084022 GTTTTGGCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:68086090 original size:43 final size:43
Alignment explanation
Indices: 68086021--68086183 Score: 227
Period size: 43 Copynumber: 3.8 Consensus size: 43
68086011 CTAAAGGCCA
* ** *
68086021 TTCCCACAAACGCAGCTAAAGGTCATGGCCTTTAGCGGCGCTT
1 TTCCCACAAACGCCGCTAAAAATCATGGCCTTTAGCGGCGTTT
* * *
68086064 TTCCCACAAACGTCGCCAAAAATCATGGCCTTTAGCGGCATTT
1 TTCCCACAAACGCCGCTAAAAATCATGGCCTTTAGCGGCGTTT
* * *
68086107 TTCCCATAAACGCCGCTAAAAATCATGACATTTAGCGGCGTTT
1 TTCCCACAAACGCCGCTAAAAATCATGGCCTTTAGCGGCGTTT
*
68086150 TTCCCACAAACGCCGCTAAAAATCATAGCCTTTA
1 TTCCCACAAACGCCGCTAAAAATCATGGCCTTTA
68086184 AAAAAATATT
Statistics
Matches: 103, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 103 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (43 bp):
TTCCCACAAACGCCGCTAAAAATCATGGCCTTTAGCGGCGTTT
Found at i:68086495 original size:31 final size:31
Alignment explanation
Indices: 68086419--68086492 Score: 100
Period size: 31 Copynumber: 2.4 Consensus size: 31
68086409 TCAAGTTATC
68086419 TTAAATATTAAAATAAAAATAAAAATTTAGAA
1 TTAAATA-TAAAATAAAAATAAAAATTTAGAA
68086451 TTAAA-ACTAAAATAAATAATAAAAA-TTAG-A
1 TTAAATA-TAAAATAAA-AATAAAAATTTAGAA
68086481 TTAAATATAAAA
1 TTAAATATAAAA
68086493 ATATCAATAA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
30 11 0.28
31 15 0.38
32 13 0.33
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (31 bp):
TTAAATATAAAATAAAAATAAAAATTTAGAA
Found at i:68091533 original size:14 final size:14
Alignment explanation
Indices: 68091496--68091533 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
68091486 CCCAAACACC
68091496 AAACCTTAAATCCT
1 AAACCTTAAATCCT
* *
68091510 AAATCATAAATCCT
1 AAACCTTAAATCCT
68091524 AAACCTTAAA
1 AAACCTTAAA
68091534 ATAATAAATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (14 bp):
AAACCTTAAATCCT
Found at i:68092080 original size:7 final size:7
Alignment explanation
Indices: 68092068--68092099 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
68092058 ATTTATCTCT
68092068 AAACCCC
1 AAACCCC
68092075 AAACCCC
1 AAACCCC
68092082 AAACCCC
1 AAACCCC
*
68092089 AAACCCT
1 AAACCCC
68092096 AAAC
1 AAAC
68092100 TCTAGGCCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.47, C:0.50, G:0.00, T:0.03
Consensus pattern (7 bp):
AAACCCC
Found at i:68092198 original size:41 final size:41
Alignment explanation
Indices: 68092153--68092337 Score: 257
Period size: 41 Copynumber: 4.5 Consensus size: 41
68092143 TTTTTTGCGG
* * *
68092153 CGTTTTTCAAAAAGCGCAGCTAAAACCTCGATTTATAGTGA
1 CGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATAGTGA
* *
68092194 CGTTTTTCCAAAAGCGCCGCTAAAACCT-GATCTATAGCGG
1 CGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATAGTGA
* * * *
68092234 CGTTTTTCGAAAAGCGCCACTAAAACCTCAATCTATAG-AA
1 CGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATAGTGA
*
68092274 GCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATAGTGG
1 -CGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATAGTGA
68092316 CGTTTTTCCAAAAGCGCCGCTA
1 CGTTTTTCCAAAAGCGCCGCTA
68092338 TTGTTCAGTT
Statistics
Matches: 126, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
40 35 0.28
41 91 0.72
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (41 bp):
CGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATAGTGA
Found at i:68092284 original size:81 final size:83
Alignment explanation
Indices: 68092149--68092337 Score: 280
Period size: 81 Copynumber: 2.3 Consensus size: 83
68092139 TTACTTTTTT
* * *
68092149 GCGGCGTTTTTCAAAAAGCG-CAGCTAAAACCTCGATTTATAGTGACGTTTTTCCAAAAGCGCCG
1 GCGGCGTTTTTCAAAAAGCGCCAGCTAAAACCTCAATCTATAGAGACGTTTTTCCAAAAGCGCCG
68092213 CTAAAACCT-GATCTATA
66 CTAAAACCTCGATCTATA
*
68092230 GCGGCGTTTTTCGAAAAGCGCCA-CTAAAACCTCAATCTATAGA-AGCGTTTTTCCAAAAGCGCC
1 GCGGCGTTTTTCAAAAAGCGCCAGCTAAAACCTCAATCTATAGAGA-CGTTTTTCCAAAAGCGCC
68092293 GCTAAAACCTCGATCTATA
65 GCTAAAACCTCGATCTATA
* *
68092312 GTGGCGTTTTTCCAAAAGCGCC-GCTA
1 GCGGCGTTTTTCAAAAAGCGCCAGCTA
68092338 TTGTTCAGTT
Statistics
Matches: 98, Mismatches: 6, Indels: 7
0.88 0.05 0.06
Matches are distributed among these distances:
80 1 0.01
81 64 0.65
82 33 0.34
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (83 bp):
GCGGCGTTTTTCAAAAAGCGCCAGCTAAAACCTCAATCTATAGAGACGTTTTTCCAAAAGCGCCG
CTAAAACCTCGATCTATA
Found at i:68105739 original size:48 final size:51
Alignment explanation
Indices: 68105665--68105802 Score: 176
Period size: 52 Copynumber: 2.7 Consensus size: 51
68105655 TTCACACCTT
*
68105665 AAGTGCCAATATCATGGTCCGAAGCCAACTCAATA-A-ATCA-T-GCACCCG
1 AAGTGCCAATATCATGG-CCGAAGCCAACTCAATATATATAACTCGCACCCG
* * *
68105713 AAGTGCAAATATCATGGCCTGTAGCCAACTCAATATATATAACTCGCACTCG
1 AAGTGCCAATATCATGGCC-GAAGCCAACTCAATATATATAACTCGCACCCG
*
68105765 AAGTGCCAATATCATGGCCCGAAGCCAACTTAATATAT
1 AAGTGCCAATATCATGG-CCGAAGCCAACTCAATATAT
68105803 GTCCCAATGA
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
47 2 0.03
48 30 0.39
49 1 0.01
50 3 0.04
51 1 0.01
52 38 0.49
53 2 0.03
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.22
Consensus pattern (51 bp):
AAGTGCCAATATCATGGCCGAAGCCAACTCAATATATATAACTCGCACCCG
Found at i:68109290 original size:21 final size:21
Alignment explanation
Indices: 68109249--68109292 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
68109239 TCTGAGTTAT
*
68109249 AAAATGTAAATTACTAAGCTA
1 AAAATGTAAAATACTAAGCTA
*
68109270 AAAATGCTAAAATA-TATGCTA
1 AAAATG-TAAAATACTAAGCTA
68109291 AA
1 AA
68109293 GATAACTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.55, C:0.09, G:0.09, T:0.27
Consensus pattern (21 bp):
AAAATGTAAAATACTAAGCTA
Found at i:68111915 original size:150 final size:147
Alignment explanation
Indices: 68111507--68111948 Score: 563
Period size: 150 Copynumber: 3.0 Consensus size: 147
68111497 CATAGGGTAA
* * * * *
68111507 GGTGCCGACGCTATGTCCCGGACATGGTCTTACACTGGCTCACACATTAAAGTCGATGCCATGTC
1 GGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATTCAAGT-GATGCCATGTC
* * * *
68111572 CCAGACATGGTCTTACACT-GACTCTCGTATATCGAGG-CAATGCCATGTCCCATACATGATCTT
65 CCAGACATGGTCTTACACTAG-CTCTCATATCTCGAGGCCAATGCCATGTCCCAGACATGGTCTT
* * *
68111635 ACACTGGCTCTCATCTATC
129 ACACTAGCTCTCATATCTC
* * * *
68111654 GGTGCCGATGCCATGTCCCAAACATGGTCTTACA-TTG-ACACATA-TCAAGCCGATGCCATGTC
1 GGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATTCAAG-TGATGCCATGTC
* **
68111716 CCAGACATGGTCTTACACTATCTCTCATATCTCGAGGCTGATGCCATGTCCCAGACATGGTCTTA
65 CCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCCAATGCCATGTCCCAGACATGGTCTTA
68111781 CACTAGCTCTCATATCTC
130 CACTAGCTCTCATATCTC
* *
68111799 GAG-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCTCGAGGATGATGCCAT
1 G-GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAT-TC-AAG-TGATGCCAT
* *
68111863 GTCCCAGTCATGGTCTTACACTAGCTCTCATATCTCAAGGCCAATGCCATGTCCCAGACATGGTC
62 GTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCCAATGCCATGTCCCAGACATGGTC
*
68111928 TTACACTAGCTTTCATATCTC
127 TTACACTAGCTCTCATATCTC
68111949 CCTAGCATCA
Statistics
Matches: 254, Mismatches: 32, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
144 48 0.19
145 74 0.29
146 5 0.02
147 35 0.14
149 2 0.01
150 90 0.35
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (147 bp):
GGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATTCAAGTGATGCCATGTCC
CAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCCAATGCCATGTCCCAGACATGGTCTTAC
ACTAGCTCTCATATCTC
Found at i:68111946 original size:50 final size:50
Alignment explanation
Indices: 68111510--68111948 Score: 511
Period size: 50 Copynumber: 8.9 Consensus size: 50
68111500 AGGGTAAGGT
* * * * * * * *
68111510 GCCGACGCTATGTCCCGGACATGGTCTTACACTGGCTCACACAT-T-AAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAG
* * *
68111558 GTCGATGCCATGTCCCAGACATGGTCTTACACT-GACTCTCGTATATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCATATCTCGAG
* * * * * *
68111608 G-CAATGCCATGTCCCATACATGATCTTACACTGGCTCTCATCTATCG-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAG
* * * * *
68111656 TGCCGATGCCATGTCCCAAACATGGTCTTACA-TTG-ACACATA--TC-AA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAG
*
68111702 GCCGATGCCATGTCCCAGACATGGTCTTACACTATCTCTCATATCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAG
*
68111752 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAG
*
68111802 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAG
** * *
68111852 GATGATGCCATGTCCCAGTCATGGTCTTACACTAGCTCTCATATCTCAAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAG
* *
68111902 GCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCATATCTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTC
68111949 CCTAGCATCA
Statistics
Matches: 337, Mismatches: 42, Indels: 22
0.84 0.10 0.05
Matches are distributed among these distances:
45 30 0.09
46 3 0.01
47 6 0.02
48 40 0.12
49 45 0.13
50 213 0.63
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (50 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAG
Found at i:68115307 original size:47 final size:46
Alignment explanation
Indices: 68115253--68115419 Score: 146
Period size: 47 Copynumber: 3.6 Consensus size: 46
68115243 AACTTAGCCA
*
68115253 ATGCATGTTCCAGACAGGTCTTACACTGGCTAACATCATCAAGGCTG
1 ATGCATGTCCCAGACAGGTCTTACACTGGCTAACATCATC-AGGCTG
* * * *
68115300 ATGCATGTTCCAGACATGTCTTACACTGGC--AC-TCACCTCTACGCCG
1 ATGCATGTCCCAGACAGGTCTTACACTGGCTAACATCA--TC-AGGCTG
* * * *
68115346 ATGCCATGTCCCAGA-ATGGTCTGACACAGGCTATCATGATGC-GGCTG
1 ATG-CATGTCCCAGACA-GGTCTTACACTGGCTAACATCAT-CAGGCTG
*
68115393 ATGCATGTCCCAGACATGTCTTACACT
1 ATGCATGTCCCAGACAGGTCTTACACT
68115420 ATCCCTCGTC
Statistics
Matches: 96, Mismatches: 15, Indels: 19
0.74 0.12 0.15
Matches are distributed among these distances:
44 3 0.03
45 2 0.02
46 29 0.30
47 57 0.59
48 1 0.01
49 2 0.02
50 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.26
Consensus pattern (46 bp):
ATGCATGTCCCAGACAGGTCTTACACTGGCTAACATCATCAGGCTG
Found at i:68115408 original size:93 final size:93
Alignment explanation
Indices: 68115206--68115461 Score: 274
Period size: 93 Copynumber: 2.8 Consensus size: 93
68115196 GTGTATACGT
* * *
68115206 GCTGATGCATGTCCCAGACATG-CTTACACTAGCA-TGAAACT-TAGCCAATG-CATGTTCCAGA
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACT-CAACTCTAGCCGATGCCATGTCCCAGA
* *
68115267 CA-GGTCTTACACTGGCTAACATCATCAAG
65 CATGGTCTGACACAGGCTAACATCATC-AG
* * *
68115296 GCTGATGCATGTTCCAGACATGTCTTACACTGGCACTCACCTCTACGCCGATGCCATGTCCCAGA
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACTCAACTCTA-GCCGATGCCATGTCCCAGA
* *
68115361 -ATGGTCTGACACAGGCTATCATGATGC-G
65 CATGGTCTGACACAGGCTAACATCAT-CAG
* * ** * *
68115389 GCTGATGCATGTCCCAGACATGTCTTACACTATCCCTCGTCTCAATGTCGATGCCATGTCCCAGA
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACTCAACTCTA-GCCGATGCCATGTCCCAGA
68115454 CATGGTCT
65 CATGGTCT
68115462 TATACTGGCT
Statistics
Matches: 139, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
90 21 0.15
91 14 0.10
92 3 0.02
93 64 0.46
94 36 0.26
95 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (93 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCACTCAACTCTAGCCGATGCCATGTCCCAGAC
ATGGTCTGACACAGGCTAACATCATCAG
Found at i:68122422 original size:44 final size:47
Alignment explanation
Indices: 68122372--68122495 Score: 150
Period size: 44 Copynumber: 2.7 Consensus size: 47
68122362 TACACGTGCT
*
68122372 GATGCATGTCCCAGACATGTCTTACACTAGCACGA-AAC-T-TA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCAC-ACAACATCGAGGCC
* * *
68122416 GATGCATGTCCCAGACACGTCTTACACTGGCTA-ACATCATCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGC-ACACAACATCGAGGCC
*
68122463 GATGCATGTCCCAAACATGTCTTACACTAGCAC
1 GATGCATGTCCCAGACATGTCTTACACTAGCAC
68122496 TCACCTCTAC
Statistics
Matches: 67, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
43 1 0.01
44 31 0.46
45 2 0.03
46 2 0.03
47 31 0.46
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.23
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACACAACATCGAGGCC
Found at i:68131696 original size:48 final size:48
Alignment explanation
Indices: 68131637--68131955 Score: 290
Period size: 48 Copynumber: 6.6 Consensus size: 48
68131627 TATGTGCGCT
*
68131637 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCACGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCC
* * * *** * * *
68131685 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATTTTGTGAGCGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCC
* ** * * * * *
68131733 AGTGTAAGACCACGTCTGGGACATGAAATCAG-CATTGATATGTGCGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCC
68131781 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGA-TATGAGAGCC
* * *
68131829 AGTTTAAGACCATGTCTGGGACATGGCATCGG-AATTCAGA-A-GAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA--C-GATATGAGAGCC
* * * *
68131877 AGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGACAT-ATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGA-GAGCC
* * *
68131925 AATGTAAGACCATGTTTGGAACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
68131956 AAAATTCACC
Statistics
Matches: 219, Mismatches: 41, Indels: 22
0.78 0.15 0.08
Matches are distributed among these distances:
46 2 0.01
47 6 0.03
48 206 0.94
49 4 0.02
51 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCC
Found at i:68131805 original size:96 final size:98
Alignment explanation
Indices: 68131632--68131955 Score: 344
Period size: 96 Copynumber: 3.4 Consensus size: 98
68131622 GGTGATATGT
* * *
68131632 GCGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCA-CGATATGAGAGCCAGTGTAAGACC
1 GCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGATATGAGAGCTAGTGTAAGACC
* * *
68131696 ATGTTTGGAACATGGCATCGG-CA-ATTTTGTGA
65 ATGTTTGGGACATGGCATCGGCCACATTATGAGA
* ** * * *
68131728 GCGCTAGTGTAAGACCACGTCTGGGACATGAAATCAGCATTGATATGTGCGCTAGTGTAAGACCA
1 GCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCA
*
68131793 TGTCTGGGACATGGCATCGGCCACATTATGAGA
66 TGTTTGGGACATGGCATCGGCCACATTATGAGA
* * * * *
68131826 GC-C-AGTTTAAGACCATGTCTGGGACATGGCATCGGAATTCAGAAGAGAGCTAGTGTAAGACCA
1 GCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCA
*
68131889 TGTTTGGGACATGGCATCAGCCTCGACA-TAT--GA
66 TGTTTGGGACATGGCATC-GGC-C-ACATTATGAGA
* * *
68131922 GC-C-AATGTAAGACCATGTTTGGAACATGGCATCG
1 GCGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
68131956 AAAATTCACC
Statistics
Matches: 192, Mismatches: 30, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
95 2 0.01
96 169 0.88
97 5 0.03
98 13 0.07
99 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (98 bp):
GCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCA
TGTTTGGGACATGGCATCGGCCACATTATGAGA
Found at i:68131884 original size:144 final size:144
Alignment explanation
Indices: 68131624--68131955 Score: 443
Period size: 144 Copynumber: 2.3 Consensus size: 144
68131614 GACATTTGGG
*
68131624 TGATATGTGCGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACGATATGAGAGCCAGTG
1 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTG
* ** * *
68131689 TAAGACCATGTTTGGAACATGGCATCGGCAATTTTGTGAGCGCTAGTGTAAGACCACGTCTGGGA
66 TAAGACCATGTCTGGAACATGGCATCGGCAATTCAGAGAGAGCTAGTGTAAGACCACGTCTGGGA
68131754 CATGAAATCAGCAT
131 CATGAAATCAGCAT
68131768 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-ATTATGAGAGCCAGT
1 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGA-TATGAGAGCCAGT
* * * *
68131832 TTAAGACCATGTCTGGGACATGGCATCGG-AATTCAGAAGAGAGCTAGTGTAAGACCATGTTTGG
65 GTAAGACCATGTCTGGAACATGGCATCGGCAATTCAG-AGAGAGCTAGTGTAAGACCACGTCTGG
** *
68131896 GACATGGCATCAGCCT
129 GACATGAAATCAGCAT
* * * * * * * *
68131912 CGACATATGAGCCAATGTAAGACCATGTTTGGAACATGGCATCG
1 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
68131956 AAAATTCACC
Statistics
Matches: 165, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
143 6 0.04
144 159 0.96
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (144 bp):
TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTG
TAAGACCATGTCTGGAACATGGCATCGGCAATTCAGAGAGAGCTAGTGTAAGACCACGTCTGGGA
CATGAAATCAGCAT
Found at i:68139588 original size:144 final size:144
Alignment explanation
Indices: 68139318--68139648 Score: 414
Period size: 144 Copynumber: 2.3 Consensus size: 144
68139308 GACATTTGGG
*
68139318 TGATATGTGCGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACGATATGAGAGCCAGTG
1 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTG
* * ** * * * *
68139383 TAAGACCATGTTTGGAACATGGCATCGGCAATTTTGTGAGCGGTAGTGTAAGACCACGTTTGGGA
66 TAAGACCATGTCTGGAACATGGCATCGACAATTGAGCGAGAGCTAGTGTAAAACCACGTTTGGGA
*
68139448 CATGATATCAGCAT
131 CATGACATCAGCAT
68139462 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-ATTATGAGAGCCAGT
1 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGA-TATGAGAGCCAGT
* * * *
68139526 GTAAGACCATGTCTGGGACATGGTATCGAC-ATTGAGACGAGAGCTTGTGTAAAACCATGTTTGG
65 GTAAGACCATGTCTGGAACATGGCATCGACAATTGAG-CGAGAGCTAGTGTAAAACCACGTTTGG
* * *
68139590 GATATGGCATCAGCGT
129 GACATGACATCAGCAT
* * * * * * *
68139606 CGACATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATC
1 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATC
68139649 AGAAATTCAC
Statistics
Matches: 161, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
143 5 0.03
144 156 0.97
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (144 bp):
TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTG
TAAGACCATGTCTGGAACATGGCATCGACAATTGAGCGAGAGCTAGTGTAAAACCACGTTTGGGA
CATGACATCAGCAT
Found at i:68139649 original size:48 final size:48
Alignment explanation
Indices: 68139331--68139650 Score: 254
Period size: 48 Copynumber: 6.7 Consensus size: 48
68139321 TATGTGCGCT
* * *
68139331 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCA-CGATATGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCAG-CATCGATATGAGAGCC
* * ** * * **
68139379 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAAT-TTTGTGAGCGGT
1 AGTGTAAGACCATGTTTGGGACATGGCATCAGC-ATCGATATGAGAGCC
* ** * * * *
68139427 AGTGTAAGACCACGTTTGGGACATGATATCAGCATTGATATGTGCGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCAGCATCGATATGAGAGCC
* *
68139475 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-C-ATTATGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCAG-CATCGA-TATGAGAGCC
* * * * * *
68139523 AGTGTAAGACCATGTCTGGGACATGGTATC-GACATTGAGACGAGAGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCAG-CATCGATATGAGAGCC
* * * * * *
68139571 TGTGTAAAACCATGTTTGGGATATGGCATCAGCGTCGACATGTGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCAGCATCGATATGAGAGCC
* *
68139619 AATGTAAGACCATGTTTGGAACATGGCATCAG
1 AGTGTAAGACCATGTTTGGGACATGGCATCAG
68139651 AAATTCACCC
Statistics
Matches: 214, Mismatches: 50, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
47 7 0.03
48 203 0.95
49 4 0.02
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCAGCATCGATATGAGAGCC
Found at i:68154907 original size:21 final size:20
Alignment explanation
Indices: 68154870--68154908 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
68154860 TTAATATTTT
*
68154870 ATTAATTTAATATTAATGTG
1 ATTAATTTAATACTAATGTG
*
68154890 ATTAATTCTAATCCTAATG
1 ATTAATT-TAATACTAATG
68154909 GAACTCTCTC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (20 bp):
ATTAATTTAATACTAATGTG
Found at i:68157571 original size:20 final size:22
Alignment explanation
Indices: 68157531--68157573 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
68157521 TAATAAAATC
68157531 ATTATAATTATTTTAGTTTTAT
1 ATTATAATTATTTTAGTTTTAT
*
68157553 ATTAT-ATTA-TTTGGTTTTAT
1 ATTATAATTATTTTAGTTTTAT
68157573 A
1 A
68157574 GATTTTAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 11 0.55
21 4 0.20
22 5 0.25
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (22 bp):
ATTATAATTATTTTAGTTTTAT
Found at i:68157632 original size:3 final size:3
Alignment explanation
Indices: 68157624--68157656 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
68157614 TGGTAAAGTA
68157624 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
68157657 CAAATCGCAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:68162697 original size:22 final size:22
Alignment explanation
Indices: 68162666--68162707 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
68162656 TCCCCATAGG
*
68162666 AAGTGTAGGGATAGATGGAGGC
1 AAGTGCAGGGATAGATGGAGGC
* *
68162688 AAGTGCAGGGTTGGATGGAG
1 AAGTGCAGGGATAGATGGAG
68162708 TTATCATGCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.29, C:0.05, G:0.48, T:0.19
Consensus pattern (22 bp):
AAGTGCAGGGATAGATGGAGGC
Found at i:68162773 original size:20 final size:20
Alignment explanation
Indices: 68162748--68162785 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
68162738 TGTTATGGGG
68162748 CAACTGTATTGAAATGGGCC
1 CAACTGTATTGAAATGGGCC
* *
68162768 CAACTGTGTTGATATGGG
1 CAACTGTATTGAAATGGG
68162786 TTAAGGCCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (20 bp):
CAACTGTATTGAAATGGGCC
Found at i:68163858 original size:43 final size:42
Alignment explanation
Indices: 68163793--68163922 Score: 154
Period size: 43 Copynumber: 3.0 Consensus size: 42
68163783 AACTTGTACA
* * *
68163793 ATGCCATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCATGTCCCAGACATGGTCTTACATGTAATCACATATCG
* * * *
68163835 ATGCCACTGTCCCAGACAGGGTCTTACACGTAATCTCA-ATACA
1 ATGCCA-TGTCCCAGACATGGTCTTACATGTAATCACATAT-CG
*
68163878 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATCTCG
1 ATGCC-ATGTCCCAGACATGGTCTTACATGTAATCACATATCG
68163921 AT
1 AT
68163923 AACCTAAAGT
Statistics
Matches: 72, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
42 8 0.11
43 62 0.86
44 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.28
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACATGTAATCACATATCG
Found at i:68174601 original size:17 final size:17
Alignment explanation
Indices: 68174579--68174611 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
68174569 ACATGAAATA
68174579 AAAGGATTAGGAGCATT
1 AAAGGATTAGGAGCATT
68174596 AAAGGATTAGGAGCAT
1 AAAGGATTAGGAGCAT
68174612 CGAATTCACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.30, T:0.21
Consensus pattern (17 bp):
AAAGGATTAGGAGCATT
Found at i:68177324 original size:48 final size:48
Alignment explanation
Indices: 68177271--68177366 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
68177261 TTTTAACTAG
68177271 TCAAACAAATCATCAATTCGAAGTAGAGGATATTTGTTCTTGATCGTC
1 TCAAACAAATCATCAATTCGAAGTAGAGGATATTTGTTCTTGATCGTC
*
68177319 TCAAACAAATCATCAATTTGAAGTAGAGGATATTTGTTCTTGATCGTC
1 TCAAACAAATCATCAATTCGAAGTAGAGGATATTTGTTCTTGATCGTC
68177367 ACTTTGTTAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (48 bp):
TCAAACAAATCATCAATTCGAAGTAGAGGATATTTGTTCTTGATCGTC
Found at i:68177759 original size:43 final size:43
Alignment explanation
Indices: 68177698--68177783 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
68177688 GTATCAAGCA
68177698 CATAAGCAAAATAAGCTTCGCAACCCTTTCTCACATATTTCTG
1 CATAAGCAAAATAAGCTTCGCAACCCTTTCTCACATATTTCTG
68177741 CATAAGCAAAATAAGCTTCGCAACCCTTTCTCACATATTTCTG
1 CATAAGCAAAATAAGCTTCGCAACCCTTTCTCACATATTTCTG
68177784 AGCTAACATC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.33, C:0.28, G:0.09, T:0.30
Consensus pattern (43 bp):
CATAAGCAAAATAAGCTTCGCAACCCTTTCTCACATATTTCTG
Found at i:68184566 original size:29 final size:30
Alignment explanation
Indices: 68184508--68184570 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 30
68184498 GCCAAAATTG
**
68184508 GAAATAAAGAAAAATGGCTAAATTGGAAAA
1 GAAATAAAGAAAAATGGCTAAATTAAAAAA
68184538 GAAAT-AAGAAAAGA-GGCTAAATTAAAAAA
1 GAAATAAAGAAAA-ATGGCTAAATTAAAAAA
68184567 -AAAT
1 GAAAT
68184571 TATAGGATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 4 0.13
29 20 0.67
30 6 0.20
ACGTcount: A:0.63, C:0.03, G:0.17, T:0.16
Consensus pattern (30 bp):
GAAATAAAGAAAAATGGCTAAATTAAAAAA
Found at i:68186558 original size:47 final size:44
Alignment explanation
Indices: 68186394--68186557 Score: 170
Period size: 46 Copynumber: 3.6 Consensus size: 44
68186384 GTGCCTATGA
* *
68186394 CATGTCCCAGACATGGTCTTACACTA-ACACATCTCATAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGACTCGTCTCATA-CCGATG
* * **
68186439 CATGTCCCATACATGTCTTACA-TTGACTTACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGAC-T-CGTCTC-ATACCGATG
* *
68186485 CATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAATACTGATG
1 CATGTCCCAGACATGTCTTACACTAG-ACTCGTCTC-ATACCGATG
68186531 CCATGTCCCAGACATGTCTTACACTAG
1 -CATGTCCCAGACATGTCTTACACTAG
68186558 CTGACAATAA
Statistics
Matches: 98, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 10 0.10
45 13 0.13
46 43 0.44
47 29 0.30
48 2 0.02
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTAGACTCGTCTCATACCGATG
Found at i:68194206 original size:46 final size:46
Alignment explanation
Indices: 68194081--68194206 Score: 146
Period size: 47 Copynumber: 2.7 Consensus size: 46
68194071 CTCGAGGTCA
* * * * * *
68194081 ATGCATGTCCCAAACATGTCTTACACTAGCACTCGTCTTAATGCTG
1 ATGCATGTCCTAGACATGTCTTACACTAGCTCTCATCATAATGCCG
* *
68194127 ATGCCATGTCCTAGACATTGTCTTACACTAGCTCTCATGAT-GTGGCCG
1 ATG-CATGTCCTAGACA-TGTCTTACACTAGCTCTCATCATAAT-GCCG
68194175 ATGCATGTCCTAGACATGTCTTACACTAGCTC
1 ATGCATGTCCTAGACATGTCTTACACTAGCTC
68194207 ACAATAACAC
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
46 19 0.28
47 25 0.36
48 25 0.36
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (46 bp):
ATGCATGTCCTAGACATGTCTTACACTAGCTCTCATCATAATGCCG
Found at i:68194659 original size:34 final size:33
Alignment explanation
Indices: 68194614--68194682 Score: 129
Period size: 34 Copynumber: 2.1 Consensus size: 33
68194604 TTTTATCACA
68194614 TTTTTTCATATCTTAAGCCTAGCCGAACCATTT
1 TTTTTTCATATCTTAAGCCTAGCCGAACCATTT
68194647 TTTTCTTCATATCTTAAGCCTAGCCGAACCATTT
1 TTTT-TTCATATCTTAAGCCTAGCCGAACCATTT
68194681 TT
1 TT
68194683 ACTCTTATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 4 0.11
34 31 0.89
ACGTcount: A:0.23, C:0.25, G:0.09, T:0.43
Consensus pattern (33 bp):
TTTTTTCATATCTTAAGCCTAGCCGAACCATTT
Found at i:68194693 original size:34 final size:34
Alignment explanation
Indices: 68194618--68194693 Score: 127
Period size: 34 Copynumber: 2.2 Consensus size: 34
68194608 ATCACATTTT
*
68194618 TTCATATCTTAAGCCTAGCCGAACCATTTTTTTC
1 TTCATATCTTAAGCCTAGCCGAACCATTTTTCTC
68194652 TTCATATCTTAAGCCTAGCCGAACCATTTTTACTC
1 TTCATATCTTAAGCCTAGCCGAACCATTTTT-CTC
68194687 TT-ATATC
1 TTCATATC
68194694 AACTCCAAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
34 36 0.90
35 4 0.10
ACGTcount: A:0.25, C:0.26, G:0.08, T:0.41
Consensus pattern (34 bp):
TTCATATCTTAAGCCTAGCCGAACCATTTTTCTC
Found at i:68197233 original size:29 final size:30
Alignment explanation
Indices: 68197160--68197238 Score: 87
Period size: 29 Copynumber: 2.8 Consensus size: 30
68197150 AGGTTGCCAA
* *
68197160 ATAT-TGTGACGAAGTCACCAGATACAGAT
1 ATATATGTGGCGAAGCCACCAGATACAGAT
* *
68197189 AT-TA--TGGCTAAGCCACCAGA-ACATAT
1 ATATATGTGGCGAAGCCACCAGATACAGAT
68197215 ATATATGTGGCGAAGCCACCAGAT
1 ATATATGTGGCGAAGCCACCAGAT
68197239 TGCAGCGAGG
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
26 7 0.17
27 15 0.38
28 1 0.03
29 17 0.43
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (30 bp):
ATATATGTGGCGAAGCCACCAGATACAGAT
Found at i:68204652 original size:27 final size:26
Alignment explanation
Indices: 68204604--68204663 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
68204594 GCGAGGCTGC
*
68204604 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
68204631 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
68204657 CAGATAT
1 CAGATAT
68204664 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:68215008 original size:27 final size:27
Alignment explanation
Indices: 68214978--68215155 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
68214968 ATATTGAGTC
* *
68214978 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
68215005 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
68215032 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
68215060 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
68215087 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
68215114 TGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
68215141 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68215156 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:68235451 original size:14 final size:14
Alignment explanation
Indices: 68235432--68235461 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
68235422 GTCATTTAGG
68235432 CCAACCAAACTGGC
1 CCAACCAAACTGGC
68235446 CCAACCAAACTGGC
1 CCAACCAAACTGGC
68235460 CC
1 CC
68235462 GGTGATTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.47, G:0.13, T:0.07
Consensus pattern (14 bp):
CCAACCAAACTGGC
Found at i:68236872 original size:42 final size:42
Alignment explanation
Indices: 68236768--68236975 Score: 169
Period size: 42 Copynumber: 4.9 Consensus size: 42
68236758 GAGCCTCCAT
*
68236768 CACCTTGGTGGC-TCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCAT-GGATGTGCGGGAGCCTCGAG-CACCATCGG
* * *
68236811 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
68236854 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** * *
68236896 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCATGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
68236938 CACCTCGGTGCTAT-GATGTGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGC-ATGGATGTGCGGGAGCC-TCGAGCACCA
68236976 AAGCTAAAGT
Statistics
Matches: 132, Mismatches: 22, Indels: 22
0.75 0.12 0.12
Matches are distributed among these distances:
41 14 0.11
42 64 0.48
43 43 0.33
44 11 0.08
ACGTcount: A:0.18, C:0.28, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:68237211 original size:24 final size:24
Alignment explanation
Indices: 68237184--68237262 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
68237174 CCGGTTAGGT
*
68237184 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
68237208 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
68237232 TCCC-GTCGGTGCTCCGGTGAACCG
1 TCCCGGT-GGTGCTCCGGCGAACCG
*
68237256 TTCCGGT
1 TCCCGGT
68237263 AGCATAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.06, C:0.38, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGAACCG
Found at i:68237344 original size:42 final size:43
Alignment explanation
Indices: 68237280--68238139 Score: 729
Period size: 43 Copynumber: 20.2 Consensus size: 43
68237270 GCCCTTGGTC
* *
68237280 GTGCGGGAGCCTCGGGCACCATCGGCACCCT-GGTGCTAGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * * **
68237322 GTGCAGGAGCCCCGGACACCATCGGCAAACTAAGCCCTTGGTAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGG-AT
* * * *
68237366 -TGCAGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
**
68237407 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
*
68237449 CGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTAT-GAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCT-TGGAT
* * ** **
68237492 GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
68237534 CGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * * **
68237577 GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * **
68237619 CGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
** **
68237662 CGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * *
68237705 CGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * ** *
68237748 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTTG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * *
68237790 CGTGCGGGAGCCTCGTGCACCATCGAC-ACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * ***
68237833 GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * ** **
68237875 CGTGCGAGAGGCTCGGGCACCATCGGCAAAATAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * **
68237918 CGTGCGGGGGCCTCGGCCACCATCGGC-ACCTCGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
68237960 CGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTCGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGT-GCTTGGAT
* * * *
68238004 GTGCGGGAGCCTCGGGCAGCATCGGC-ACCTCGGTGGCTAGGAG
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGT-GCTTGGAT
* *
68238047 GTGCGGGAGCCTCGGACACCATCGGCAA-CTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
68238089 GTGCGGGAGCCTCGGGCACCCATCGGC-ACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGGCA-CCATCGGCAACCTAGGTG-CTTGGAT
68238133 GTGCGGG
1 GTGCGGG
68238140 CTAAAGAAGA
Statistics
Matches: 671, Mismatches: 122, Indels: 48
0.80 0.15 0.06
Matches are distributed among these distances:
41 2 0.00
42 257 0.38
43 395 0.59
44 17 0.03
ACGTcount: A:0.16, C:0.32, G:0.35, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
Found at i:68237416 original size:85 final size:85
Alignment explanation
Indices: 68237267--68238116 Score: 992
Period size: 85 Copynumber: 10.0 Consensus size: 85
68237257 TCCGGTAGCA
* *
68237267 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCT-GGTGCTAGGATGTGCAGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA-CCTAGGTGCTTGGATGTGCGGGAG
* * *
68237331 CCCCGGACACCATCGGCAAAC
65 CCTCGGGCACCATCGGCAACC
* ** * * * *
68237352 TAAGCCCTTGGTATTGCAGGAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGC
68237417 CTCGGGCACCATCGGCAACC
66 CTCGGGCACCATCGGCAACC
* *
68237437 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTAT-GATGGGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCT-TGGATGTGCGGGAG
* **
68237501 CCTCGGACACTGTCGGCAACC
65 CCTCGGGCACCATCGGCAACC
* * * * *
68237522 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGC
* *
68237587 CTCGCGCACCATCGACAACC
66 CTCGGGCACCATCGGCAACC
* * * * **
68237607 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG-TCGTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGA
**
68237671 GCCTCGGGCACCATCGGCAAAA
64 GCCTCGGGCACCATCGGCAACC
* * *
68237693 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCTCCTAGGTGCTGGGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGC
* *
68237758 CTCGGACACCATCGGCAAAC
66 CTCGGGCACCATCGGCAACC
* * * * * *
68237778 TAGGCCCTTTGTCGTGCGGGAGCCTCGTGCACCATCGACACCTTGGTGCTTGGATGTGCCGGAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGC
68237843 CTCGGGCACCATCGGCAACC
66 CTCGGGCACCATCGGCAACC
* * * ** ** *
68237863 TAGACCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAATAGGCCCTTGG-TCGTGCGGGG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGA
*
68237927 GCCTCGGCCACCATCGGC-ACC
64 GCCTCGGGCACCATCGGCAACC
* * *
68237948 TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGT-GCTTGGATGTGCGGGAG
*
68238013 CCTCGGGCAGCATCGGC-ACC
65 CCTCGGGCACCATCGGCAACC
* ** * ** * * *
68238033 TCGGTGGCTAGGAGGTGCGGGAGCCTCGGACACCATCGGCAACTTGGTGCTTGGATGTGCGGGAG
1 TAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAG
68238098 CCTCGGGCACCCATCGGCA
65 CCTCGGGCA-CCATCGGCA
68238117 CCTTGGTGCC
Statistics
Matches: 647, Mismatches: 105, Indels: 24
0.83 0.14 0.03
Matches are distributed among these distances:
84 8 0.01
85 494 0.76
86 145 0.22
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (85 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGC
CTCGGGCACCATCGGCAACC
Found at i:68237764 original size:256 final size:254
Alignment explanation
Indices: 68237267--68238116 Score: 1075
Period size: 256 Copynumber: 3.3 Consensus size: 254
68237257 TCCGGTAGCA
* * * *
68237267 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTGGTGCTAGGATGTGC-AGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCACCTTGGTGCTTGGATGTCCGA-GAA
* * * * ** * * *
68237331 CCCCGGACACCATCGGCAAACTAAGCCCTTGGTATTGC-AGGAGCCTCGGGCGCCATCGGC-ACC
64 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAGGCTCGGGCACCATCGGCAAAC
* ** *
68237394 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
128 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * * *
68237458 GCCTCGGGCACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACC
192 GCCTCGGGCACCATCGGCACCTAGGTGCTAGGATGTGCGGGAGCCTCGGACAC-ATCGGCAACC
68237522 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCG-GCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAAC
* *
68237587 CTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTA
65 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTA
* **
68237652 AGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCC
130 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCC
* * * *
68237717 TCGGCCACCATCGGCTCCTAGGTGCTGGGATGTGCGGGAGCCTCGGACACCATCGGCAAAC
195 TCGGGCACCATCGGCACCTAGGTGCTAGGATGTGCGGGAGCCTCGGACA-CATCGGCAACC
* *
68237778 TAGGCCCTTTGTCGTGCGGGAGCCTCGTGCACCATCGACACCTTGGTGCTTGGATGTGCCG-GAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCG-GCACCATCGGCACCTTGGTGCTTGGATGT-CCGAGAA
* *
68237842 CCTCGGGCACCATCGGCAACCTAGACCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAAT
64 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACT
* * *
68237907 AGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGGC-ACCTCGGCCCTTGGTCGTGCGGGAGC
129 AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * *
68237971 CTCGGGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGGGCAGCATCGGC-ACC
194 CTCGGGCACCATCGGCACCTAGGT-GCTAGGATGTGCGGGAGCCTCGGACA-CATCGGCAACC
* ** * ** * * * *
68238033 TCGGTGGCTAGGAGGTGCGGGAGCCTCGGACACCATCGGCAACTTGGTGCTTGGATGTGCGGGAG
1 TAGG-CCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCACCTTGGTGCTTGGATGTCCGAGAA
68238098 CCTCGGGCACCCATCGGCA
64 CCTCGGGCA-CCATCGGCA
68238117 CCTTGGTGCC
Statistics
Matches: 522, Mismatches: 61, Indels: 22
0.86 0.10 0.04
Matches are distributed among these distances:
254 1 0.00
255 158 0.30
256 350 0.67
257 13 0.02
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (254 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACC
TCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAG
GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCT
CGGGCACCATCGGCACCTAGGTGCTAGGATGTGCGGGAGCCTCGGACACATCGGCAACC
Found at i:68246144 original size:42 final size:42
Alignment explanation
Indices: 68246040--68246247 Score: 169
Period size: 42 Copynumber: 4.9 Consensus size: 42
68246030 GAGCCTCCAT
*
68246040 CACCTTGGTGGC-TCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCAT-GGATGTGCGGGAGCCTCGAG-CACCATCGG
* * *
68246083 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
68246126 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** * *
68246168 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCATGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
68246210 CACCTCGGTGCTAT-GATGTGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGC-ATGGATGTGCGGGAGCC-TCGAGCACCA
68246248 AAGCTAAAGT
Statistics
Matches: 132, Mismatches: 22, Indels: 22
0.75 0.12 0.12
Matches are distributed among these distances:
41 14 0.11
42 64 0.48
43 43 0.33
44 11 0.08
ACGTcount: A:0.18, C:0.28, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:68246484 original size:24 final size:24
Alignment explanation
Indices: 68246457--68246535 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
68246447 CCGGTTAGGT
*
68246457 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
68246481 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
68246505 TCCC-GTCGGTGCTCCGGTGAACCG
1 TCCCGGT-GGTGCTCCGGCGAACCG
*
68246529 TTCCGGT
1 TCCCGGT
68246536 AGCATAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.06, C:0.38, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGAACCG
Found at i:68246617 original size:42 final size:43
Alignment explanation
Indices: 68246553--68247412 Score: 729
Period size: 43 Copynumber: 20.2 Consensus size: 43
68246543 GCCCTTGGTC
* *
68246553 GTGCGGGAGCCTCGGGCACCATCGGCACCCT-GGTGCTAGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * * **
68246595 GTGCAGGAGCCCCGGACACCATCGGCAAACTAAGCCCTTGGTAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGG-AT
* * * *
68246639 -TGCAGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
**
68246680 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
*
68246722 CGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTAT-GAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCT-TGGAT
* * ** **
68246765 GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
68246807 CGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * * **
68246850 GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * **
68246892 CGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
** **
68246935 CGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * *
68246978 CGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * ** *
68247021 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTTG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * *
68247063 CGTGCGGGAGCCTCGTGCACCATCGAC-ACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * ***
68247106 GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * ** **
68247148 CGTGCGAGAGGCTCGGGCACCATCGGCAAAATAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * **
68247191 CGTGCGGGGGCCTCGGCCACCATCGGC-ACCTCGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
68247233 CGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTCGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGT-GCTTGGAT
* * * *
68247277 GTGCGGGAGCCTCGGGCAGCATCGGC-ACCTCGGTGGCTAGGAG
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGT-GCTTGGAT
* *
68247320 GTGCGGGAGCCTCGGACACCATCGGCAA-CTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
68247362 GTGCGGGAGCCTCGGGCACCCATCGGC-ACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGGCA-CCATCGGCAACCTAGGTG-CTTGGAT
68247406 GTGCGGG
1 GTGCGGG
68247413 CTAAAGAAGA
Statistics
Matches: 671, Mismatches: 122, Indels: 48
0.80 0.15 0.06
Matches are distributed among these distances:
41 2 0.00
42 257 0.38
43 395 0.59
44 17 0.03
ACGTcount: A:0.16, C:0.32, G:0.35, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
Found at i:68246689 original size:85 final size:85
Alignment explanation
Indices: 68246540--68247389 Score: 992
Period size: 85 Copynumber: 10.0 Consensus size: 85
68246530 TCCGGTAGCA
* *
68246540 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCT-GGTGCTAGGATGTGCAGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA-CCTAGGTGCTTGGATGTGCGGGAG
* * *
68246604 CCCCGGACACCATCGGCAAAC
65 CCTCGGGCACCATCGGCAACC
* ** * * * *
68246625 TAAGCCCTTGGTATTGCAGGAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGC
68246690 CTCGGGCACCATCGGCAACC
66 CTCGGGCACCATCGGCAACC
* *
68246710 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTAT-GATGGGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCT-TGGATGTGCGGGAG
* **
68246774 CCTCGGACACTGTCGGCAACC
65 CCTCGGGCACCATCGGCAACC
* * * * *
68246795 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGC
* *
68246860 CTCGCGCACCATCGACAACC
66 CTCGGGCACCATCGGCAACC
* * * * **
68246880 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG-TCGTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGA
**
68246944 GCCTCGGGCACCATCGGCAAAA
64 GCCTCGGGCACCATCGGCAACC
* * *
68246966 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCTCCTAGGTGCTGGGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGC
* *
68247031 CTCGGACACCATCGGCAAAC
66 CTCGGGCACCATCGGCAACC
* * * * * *
68247051 TAGGCCCTTTGTCGTGCGGGAGCCTCGTGCACCATCGACACCTTGGTGCTTGGATGTGCCGGAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGC
68247116 CTCGGGCACCATCGGCAACC
66 CTCGGGCACCATCGGCAACC
* * * ** ** *
68247136 TAGACCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAATAGGCCCTTGG-TCGTGCGGGG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGA
*
68247200 GCCTCGGCCACCATCGGC-ACC
64 GCCTCGGGCACCATCGGCAACC
* * *
68247221 TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGT-GCTTGGATGTGCGGGAG
*
68247286 CCTCGGGCAGCATCGGC-ACC
65 CCTCGGGCACCATCGGCAACC
* ** * ** * * *
68247306 TCGGTGGCTAGGAGGTGCGGGAGCCTCGGACACCATCGGCAACTTGGTGCTTGGATGTGCGGGAG
1 TAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAG
68247371 CCTCGGGCACCCATCGGCA
65 CCTCGGGCA-CCATCGGCA
68247390 CCTTGGTGCC
Statistics
Matches: 647, Mismatches: 105, Indels: 24
0.83 0.14 0.03
Matches are distributed among these distances:
84 8 0.01
85 494 0.76
86 145 0.22
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (85 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGC
CTCGGGCACCATCGGCAACC
Found at i:68247037 original size:256 final size:254
Alignment explanation
Indices: 68246540--68247389 Score: 1075
Period size: 256 Copynumber: 3.3 Consensus size: 254
68246530 TCCGGTAGCA
* * * *
68246540 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTGGTGCTAGGATGTGC-AGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCACCTTGGTGCTTGGATGTCCGA-GAA
* * * * ** * * *
68246604 CCCCGGACACCATCGGCAAACTAAGCCCTTGGTATTGC-AGGAGCCTCGGGCGCCATCGGC-ACC
64 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAGGCTCGGGCACCATCGGCAAAC
* ** *
68246667 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
128 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * * *
68246731 GCCTCGGGCACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACC
192 GCCTCGGGCACCATCGGCACCTAGGTGCTAGGATGTGCGGGAGCCTCGGACAC-ATCGGCAACC
68246795 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCG-GCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAAC
* *
68246860 CTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTA
65 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTA
* **
68246925 AGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCC
130 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCC
* * * *
68246990 TCGGCCACCATCGGCTCCTAGGTGCTGGGATGTGCGGGAGCCTCGGACACCATCGGCAAAC
195 TCGGGCACCATCGGCACCTAGGTGCTAGGATGTGCGGGAGCCTCGGACA-CATCGGCAACC
* *
68247051 TAGGCCCTTTGTCGTGCGGGAGCCTCGTGCACCATCGACACCTTGGTGCTTGGATGTGCCG-GAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCG-GCACCATCGGCACCTTGGTGCTTGGATGT-CCGAGAA
* *
68247115 CCTCGGGCACCATCGGCAACCTAGACCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAAT
64 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACT
* * *
68247180 AGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGGC-ACCTCGGCCCTTGGTCGTGCGGGAGC
129 AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * *
68247244 CTCGGGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGGGCAGCATCGGC-ACC
194 CTCGGGCACCATCGGCACCTAGGT-GCTAGGATGTGCGGGAGCCTCGGACA-CATCGGCAACC
* ** * ** * * * *
68247306 TCGGTGGCTAGGAGGTGCGGGAGCCTCGGACACCATCGGCAACTTGGTGCTTGGATGTGCGGGAG
1 TAGG-CCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCACCTTGGTGCTTGGATGTCCGAGAA
68247371 CCTCGGGCACCCATCGGCA
64 CCTCGGGCA-CCATCGGCA
68247390 CCTTGGTGCC
Statistics
Matches: 522, Mismatches: 61, Indels: 22
0.86 0.10 0.04
Matches are distributed among these distances:
254 1 0.00
255 158 0.30
256 350 0.67
257 13 0.02
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (254 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACC
TCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAG
GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCT
CGGGCACCATCGGCACCTAGGTGCTAGGATGTGCGGGAGCCTCGGACACATCGGCAACC
Found at i:68264696 original size:27 final size:27
Alignment explanation
Indices: 68264664--68264841 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
68264654 ATATTGAGTC
* *
68264664 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
68264691 CACACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
68264718 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
68264746 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
** **
68264773 CGCACACTTAGTGC-ATCATGTTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
68264800 CGCACACTTAGTGC-ATCATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACT
68264827 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68264842 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:68264824 original size:54 final size:54
Alignment explanation
Indices: 68264664--68264841 Score: 184
Period size: 54 Copynumber: 3.3 Consensus size: 54
68264654 ATATTGAGTC
* * * * * *
68264664 CGCACACTCAGTGCTATATAATC-AACTCACACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCT-CATAGTCAAAT
* * *
68264718 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTG-CTCATAGTCAAAT
**
68264773 CGCACACTTAGTGC-ATCAT-GTTC-ATTTCGCACACTTAGTGCATCATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAG-TCAAACTCGCACACTTAGTGC-TCATAGTCAAAT
68264827 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68264842 GTACAATTTA
Statistics
Matches: 104, Mismatches: 14, Indels: 11
0.81 0.11 0.09
Matches are distributed among these distances:
53 1 0.01
54 60 0.58
55 42 0.40
56 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTCATAGTCAAAT
Found at i:68269695 original size:50 final size:50
Alignment explanation
Indices: 68269586--68269795 Score: 201
Period size: 50 Copynumber: 4.2 Consensus size: 50
68269576 GCTAAATGAC
* * * * * * *
68269586 CTTGTATATTCAACCACATAGGTATGTACATATGTGATGTTGTA-TTAGGT
1 CTTGTATATTCAGCCATATAGGTAAGCACATATGTGATATTATATTTA-AT
* * * *
68269636 CTTGAATATTCAGCCATGA-AGGTATGCACAAATGCGATATTATATTTAAAT
1 CTTGTATATTCAGCCAT-ATAGGTAAGCACATATGTGATATTATATTT-AAT
* * * * * *
68269687 -TTGTATATTCGGCCATATAAGTAAGTACATATGTGATGTTAAATTTGAT
1 CTTGTATATTCAGCCATATAGGTAAGCACATATGTGATATTATATTTAAT
* *
68269736 CTTGCATATTCAGTCATATAGGTAAGCACATATGTGATATTATATTTAAT
1 CTTGTATATTCAGCCATATAGGTAAGCACATATGTGATATTATATTTAAT
68269786 CTTGTATATT
1 CTTGTATATT
68269796 TGGCCAAATG
Statistics
Matches: 127, Mismatches: 28, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
49 3 0.02
50 119 0.94
51 4 0.03
52 1 0.01
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (50 bp):
CTTGTATATTCAGCCATATAGGTAAGCACATATGTGATATTATATTTAAT
Found at i:68269765 original size:100 final size:100
Alignment explanation
Indices: 68269586--68269801 Score: 265
Period size: 100 Copynumber: 2.2 Consensus size: 100
68269576 GCTAAATGAC
** * * ** *
68269586 CTTGTATATTCAACCACATAGGTATGTACATATGTGATGTTGTATTAGGTCTTGAATATTCAGCC
1 CTTGTATATTCGGCCACATAAGTAAGTACATATGTGATGTTAAATTAGATCTTGAATATTCAGCC
*
68269651 ATGAAGGTATGCACAAATGCGATATTATATTTAAAT
66 ATGAAGGTAAGCACAAATGCGATATTATATTT-AAT
* * * *
68269687 -TTGTATATTCGGCCATATAAGTAAGTACATATGTGATGTTAAATTTGATCTTGCATATTCAGTC
1 CTTGTATATTCGGCCACATAAGTAAGTACATATGTGATGTTAAATTAGATCTTGAATATTCAGCC
* *
68269751 AT-ATAGGTAAGCACATATGTGATATTATATTTAAT
66 ATGA-AGGTAAGCACAAATGCGATATTATATTTAAT
*
68269786 CTTGTATATTTGGCCA
1 CTTGTATATTCGGCCA
68269802 AATGAGTGAT
Statistics
Matches: 98, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
99 4 0.04
100 94 0.96
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.39
Consensus pattern (100 bp):
CTTGTATATTCGGCCACATAAGTAAGTACATATGTGATGTTAAATTAGATCTTGAATATTCAGCC
ATGAAGGTAAGCACAAATGCGATATTATATTTAAT
Found at i:68278909 original size:93 final size:93
Alignment explanation
Indices: 68278795--68278964 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
68278785 CCCATAAGCA
* * * *
68278795 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGCGAACTCGGACTCAACTCAAT
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGCGAACTCGAACTCAACTCAAC
*
68278860 GAGTTCGGATGCCTAGTTACATCTCACG
66 GAATTCGGATGCCTAGTTACATCTCACG
* *
68278888 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGCGAACTCGAACTCAACTCAAC
68278953 GAATTCGGATGC
66 GAATTCGGATGC
68278965 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGCGAACTCGAACTCAACTCAAC
GAATTCGGATGCCTAGTTACATCTCACG
Found at i:68278961 original size:46 final size:46
Alignment explanation
Indices: 68278786--68278961 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
68278776 TGTAACCCGC
* * * *
68278786 CCATAAGCAAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
68278832 CCATAAGCGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
68278882 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
68278925 CCATAAGTGAACTCGAACTCAACTCAACGAATTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
68278962 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:68278980 original size:46 final size:45
Alignment explanation
Indices: 68278887--68278972 Score: 111
Period size: 46 Copynumber: 1.9 Consensus size: 45
68278877 TACATCTCAC
* * * *
68278887 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGAACTCAACTCAACGAATTCGGA-ATGCGCAACCATAAGT
*
68278933 GAACTCGAACTCAACTCAACGAATTCGG-ATGCTCAACCAT
1 GAACTCGAACTCAACTCAACGAATTCGGAATGCGCAACCAT
68278973 CCTAGTGACA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 9 0.26
46 26 0.74
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.21
Consensus pattern (45 bp):
GAACTCGAACTCAACTCAACGAATTCGGAATGCGCAACCATAAGT
Found at i:68285208 original size:25 final size:25
Alignment explanation
Indices: 68285180--68285231 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
68285170 TTTGGCTTGA
*
68285180 CATTTACTAAGAAATATCGAATATT
1 CATTTACTAAGAAATATCAAATATT
* * *
68285205 CATTTATTAGGCAATATCAAATATT
1 CATTTACTAAGAAATATCAAATATT
68285230 CA
1 CA
68285232 AATTACTCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.42, C:0.13, G:0.08, T:0.37
Consensus pattern (25 bp):
CATTTACTAAGAAATATCAAATATT
Found at i:68299930 original size:21 final size:22
Alignment explanation
Indices: 68299891--68299931 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
68299881 TCGAATTAGT
*
68299891 CACACGGGCGTGTTGCCCCTCC
1 CACACAGGCGTGTTGCCCCTCC
68299913 CACACAGGCGTG-TGCCCCT
1 CACACAGGCGTGTTGCCCCT
68299932 GTGTCTAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.12, C:0.44, G:0.27, T:0.17
Consensus pattern (22 bp):
CACACAGGCGTGTTGCCCCTCC
Found at i:68301359 original size:48 final size:47
Alignment explanation
Indices: 68301284--68301558 Score: 210
Period size: 48 Copynumber: 5.7 Consensus size: 47
68301274 TGATATGTGT
* *
68301284 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCACATCATGAGA
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCAT-ATGAGA
* * * * * *
68301332 GCCAGTGTAACACCATGTCTGGGACATGGCATTGGCGTTGATATGTA-C
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGC-CTCATATG-AGA
* * * * * * * * *
68301380 GCTAGTGTAAGACCATGTCTGGGACATAGCATCGACGTTGATGTGTGG
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGC-CTCATATGAGA
* * * * * * * *
68301428 GCTAGTGTAAGACCATGTTTGGAACATGGCATTGGCAATTAGACGACA
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGC-CTCATATGAGA
* * * *
68301476 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGA
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTC-ATATGAGA
* *
68301524 GCCAGTGTAAGACCATGTTTGGAACATGGTATCGG
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGG
68301559 TAATTCACCC
Statistics
Matches: 180, Mismatches: 43, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
47 1 0.01
48 176 0.98
49 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.25
Consensus pattern (47 bp):
GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCATATGAGA
Found at i:68301396 original size:96 final size:96
Alignment explanation
Indices: 68301287--68301552 Score: 315
Period size: 96 Copynumber: 2.8 Consensus size: 96
68301277 TATGTGTGCC
* * * * * *
68301287 AGTGTAAGACCATGTTTGGAACATGGCATCGGCCACATCATGAGAGCCAGTGTAACACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCATCATGTGAGCCAGTGTAAGACCATGTTT
* * * *
68301352 GGGACATGGCATTGGC-GTTGATATGTAC-GCT
66 GGAACATGGCATTGGCAATT-AGACG-ACAGCT
* * * * * * *
68301383 AGTGTAAGACCATGTCTGGGACATAGCATCGACGTTGAT-GTGTGGGCTAGTGTAAGACCATGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCATCATGTGAGCCAGTGTAAGACCATGTT
68301447 TGGAACATGGCATTGGCAATTAGACGACAGCT
65 TGGAACATGGCATTGGCAATTAGACGACAGCT
68301479 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-CATGTGAGCCAGTGTAAGACCATGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC-ATCATGTGAGCCAGTGTAAGACCATGTT
68301543 TGGAACATGG
65 TGGAACATGG
68301553 TATCGGTAAT
Statistics
Matches: 141, Mismatches: 24, Indels: 10
0.81 0.14 0.06
Matches are distributed among these distances:
95 3 0.02
96 134 0.95
97 4 0.03
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCATCATGTGAGCCAGTGTAAGACCATGTTT
GGAACATGGCATTGGCAATTAGACGACAGCT
Found at i:68308988 original size:41 final size:41
Alignment explanation
Indices: 68308940--68309159 Score: 273
Period size: 41 Copynumber: 5.3 Consensus size: 41
68308930 TATTCGGGCT
*
68308940 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAATCGGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAATCAGGC
* *
68308981 TTATTGCCTAGCAGGCTTTGTGCCGATGTATTAAATTAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAATCAGGC
* * * *
68309022 TTATTACCTAGCAGGCTTTGTGTCGGTGTATTATATCAAGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAATCAGGC
* * *
68309063 TTATTGCCTAGCAGGCTTTATATGCCTGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGC-TT-TGTGCCGGTGTATTAAATCAGGC
* * *
68309106 TTATTGTCTAGCAGGCTTTGTGCCGGTGTTTTATA-CTAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAATC-AGGC
68309147 TT-TATGCCTAGCA
1 TTAT-TGCCTAGCA
68309160 AATTTTATGT
Statistics
Matches: 156, Mismatches: 19, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
40 2 0.01
41 116 0.74
42 4 0.03
43 34 0.22
ACGTcount: A:0.20, C:0.18, G:0.24, T:0.38
Consensus pattern (41 bp):
TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAATCAGGC
Found at i:68309167 original size:84 final size:84
Alignment explanation
Indices: 68308940--68309160 Score: 272
Period size: 84 Copynumber: 2.7 Consensus size: 84
68308930 TATTCGGGCT
* * * *
68308940 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAATCGGGCTTATTGCCTAGCAGGC-TT-TGTG
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAAGCTTTATATG
*
68309003 CCGATGTATTAAATTAGGC
66 CCGATGTATTAAATCAGGC
* * * *
68309022 TTATTACCTAGCAGGCTTTGTGTCGGTGTATTATATCAAGCTTATTGCCTAGCAGGCTTTATATG
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAAGCTTTATATG
*
68309087 CCTG-TGTATTATATCAGGC
66 CC-GATGTATTAAATCAGGC
* *
68309106 TTATTGTCTAGCAGGCTTTGTGCCGGTGTTTTATA-CTAGGCTT-TATGCCTAGCAA
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATC-AGGCTTAT-TGCCTAGCAA
68309161 ATTTTATGTG
Statistics
Matches: 120, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
82 52 0.43
83 4 0.03
84 63 0.52
85 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.24, T:0.38
Consensus pattern (84 bp):
TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAAGCTTTATATG
CCGATGTATTAAATCAGGC
Found at i:68311655 original size:48 final size:48
Alignment explanation
Indices: 68311580--68311804 Score: 172
Period size: 48 Copynumber: 4.7 Consensus size: 48
68311570 TGATATGCGT
*
68311580 GCCAGTGTAAGACCATGT-TCGGAACATGGCATCGGCCACATCATGAGA
1 GCCAGTGTAAGACCATGTCT-GGGACATGGCATCGGCCACATCATGAGA
* *** * *
68311628 GCCAGTGTAAGAGCATGTCTGGGACATGGCATCGGCGTTGAT-ATGTGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CACATCATGAGA
* * * * * *
68311676 GCTAGTGTAAGACCATGTCTGGGACATAGCATC-G-AAAATGAGACGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAT--CATGAGA
* * ** * *
68311724 GCTAGTGTAAAACCATGTCTAAGACATGGCATCGGCCTCGA-CATGTGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-ATCATGAGA
* * *
68311772 ACCAGTGTAAGACCATGTTTGGAACATGGCATC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
68311805 AGCAATTCAC
Statistics
Matches: 136, Mismatches: 33, Indels: 16
0.74 0.18 0.09
Matches are distributed among these distances:
45 2 0.01
47 1 0.01
48 128 0.94
49 4 0.03
51 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATCATGAGA
Found at i:68311741 original size:96 final size:96
Alignment explanation
Indices: 68311624--68311804 Score: 236
Period size: 96 Copynumber: 1.9 Consensus size: 96
68311614 GCCACATCAT
* * ** * * * ** *
68311624 GAGAGCCAGTGTAAGAGCATGTCTGGGACATGGCATCGGCGTTGATATGTGCGCTAGTGTAAGAC
1 GAGAGCCAGTGTAAAACCATGTCTAAGACATGGCATCGGCCTCGACATGTGAACCAGTGTAAGAC
*
68311689 CATGTCTGGGACATAGCATCGAAAATGAGAC
66 CATGTCTGGAACATAGCATCGAAAATGAGAC
*
68311720 GAGAGCTAGTGTAAAACCATGTCTAAGACATGGCATCGGCCTCGACATGTGAACCAGTGTAAGAC
1 GAGAGCCAGTGTAAAACCATGTCTAAGACATGGCATCGGCCTCGACATGTGAACCAGTGTAAGAC
* *
68311785 CATGTTTGGAACATGGCATC
66 CATGTCTGGAACATAGCATC
68311805 AGCAATTCAC
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
96 71 1.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.22
Consensus pattern (96 bp):
GAGAGCCAGTGTAAAACCATGTCTAAGACATGGCATCGGCCTCGACATGTGAACCAGTGTAAGAC
CATGTCTGGAACATAGCATCGAAAATGAGAC
Found at i:68316128 original size:48 final size:49
Alignment explanation
Indices: 68316073--68316256 Score: 221
Period size: 48 Copynumber: 3.8 Consensus size: 49
68316063 CATGAGCCAA
68316073 TGTAAGACCATGTTTGGAACATGGCATCGGCAT-TTACATGAGAGCTAG
1 TGTAAGACCATGTTTGGAACATGGCATCGGCATCTTACATGAGAGCTAG
* * * * * * *
68316121 TGTAAGACCATGTATGGGACATGGCATCAGCCTCGT-CATGTGGGCTAG
1 TGTAAGACCATGTTTGGAACATGGCATCGGCATCTTACATGAGAGCTAG
* * *
68316169 TGTAAGACCATGTTTGGAACATGGCATCGGCA-CTGATATATGAGAACCAG
1 TGTAAGACCATGTTTGGAACATGGCATCGGCATCT--TACATGAGAGCTAG
* *
68316219 TGTAAGACCATGTCTGGGACATGGCATCGGCATCTTAC
1 TGTAAGACCATGTTTGGAACATGGCATCGGCATCTTAC
68316257 CCTTTTGTAT
Statistics
Matches: 111, Mismatches: 20, Indels: 9
0.79 0.14 0.06
Matches are distributed among these distances:
47 1 0.01
48 67 0.60
49 4 0.04
50 37 0.33
51 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (49 bp):
TGTAAGACCATGTTTGGAACATGGCATCGGCATCTTACATGAGAGCTAG
Found at i:68317218 original size:81 final size:81
Alignment explanation
Indices: 68317125--68317286 Score: 315
Period size: 81 Copynumber: 2.0 Consensus size: 81
68317115 ATTTGGCAAA
*
68317125 CAGAATACCCAGTAGTAACCATACAGGTGGAGACATGGCTGTCTGTCTTAACCGTGTAGAGGACA
1 CAGAATACCCAGTAGTAACCATACAGGTGGAGACATGGCTGTCTGTCTTAACCATGTAGAGGACA
68317190 CGACCTAGCACACGGG
66 CGACCTAGCACACGGG
68317206 CAGAATACCCAGTAGTAACCATACAGGTGGAGACATGGCTGTCTGTCTTAACCATGTAGAGGACA
1 CAGAATACCCAGTAGTAACCATACAGGTGGAGACATGGCTGTCTGTCTTAACCATGTAGAGGACA
68317271 CGACCTAGCACACGGG
66 CGACCTAGCACACGGG
68317287 AGTGTGCCTT
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.30, C:0.25, G:0.27, T:0.19
Consensus pattern (81 bp):
CAGAATACCCAGTAGTAACCATACAGGTGGAGACATGGCTGTCTGTCTTAACCATGTAGAGGACA
CGACCTAGCACACGGG
Found at i:68320640 original size:14 final size:16
Alignment explanation
Indices: 68320621--68320664 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 16
68320611 AGCAACCCAT
68320621 ATTTATTT-ATTTT-A
1 ATTTATTTAATTTTGA
68320635 ATTTATTTAATTTTGA
1 ATTTATTTAATTTTGA
*
68320651 ATTAAGTTTAATTT
1 ATTTA-TTTAATTT
68320665 ATGTTGAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 8 0.31
15 5 0.19
16 5 0.19
17 8 0.31
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.64
Consensus pattern (16 bp):
ATTTATTTAATTTTGA
Found at i:68334047 original size:30 final size:30
Alignment explanation
Indices: 68334013--68334096 Score: 141
Period size: 30 Copynumber: 2.8 Consensus size: 30
68334003 ATTTTCAGAC
*
68334013 CTAGGGGTAAAATGGTCATTTTGCAAAAGT
1 CTAGGGGAAAAATGGTCATTTTGCAAAAGT
* *
68334043 CTAGGGGCAAAATGGTCATTTTGTAAAAGT
1 CTAGGGGAAAAATGGTCATTTTGCAAAAGT
68334073 CTAGGGGAAAAATGGTCATTTTGC
1 CTAGGGGAAAAATGGTCATTTTGC
68334097 CCAATTTTTA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.30
Consensus pattern (30 bp):
CTAGGGGAAAAATGGTCATTTTGCAAAAGT
Found at i:68334619 original size:94 final size:93
Alignment explanation
Indices: 68334431--68334655 Score: 258
Period size: 94 Copynumber: 2.4 Consensus size: 93
68334421 TCATTTGTGT
* * * *
68334431 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGGGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACTACATGAT-GGAGCCAGTGTAAGACCATATC
* **
68334496 TGGGACATGGCATCGGCATTGAGACGAGA
65 TGGGACATGGCATCAGCACGGAGACGAGA
* *
68334525 GCTAGTGTAAGACATGTCTGGGACATGCATCGACTACATGAT-GTGCTAG-GATAAGACCATATC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACTACATGATGGAGCCAGTG-TAAGACCATATC
*
68334588 TGGGACATGGCATCAGCACGGATACGTGAGA
65 TGGGACATGGCATCAGCACGGAGAC--GAGA
* *
68334619 G-TCAGTGTAAGACCATGTCTAGGACATGGCATTGACT
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGACT
68334656 TAACGTAAGA
Statistics
Matches: 113, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
91 1 0.01
92 37 0.33
93 1 0.01
94 53 0.47
95 13 0.12
96 8 0.07
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACTACATGATGGAGCCAGTGTAAGACCATATCT
GGGACATGGCATCAGCACGGAGACGAGA
Found at i:68340417 original size:30 final size:31
Alignment explanation
Indices: 68340354--68340418 Score: 80
Period size: 30 Copynumber: 2.1 Consensus size: 31
68340344 AATATTTTTT
* *
68340354 AATAATAATTATTCCTATTTATTTATGTTTA
1 AATAATAATTATTACTATTTATTTATGTATA
*
68340385 AATAA-AATTATTAGTATTTATTTAT-TAATA
1 AATAATAATTATTACTATTTATTTATGT-ATA
68340415 AATA
1 AATA
68340419 CATTATACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 1 0.03
30 24 0.80
31 5 0.17
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (31 bp):
AATAATAATTATTACTATTTATTTATGTATA
Found at i:68346802 original size:5 final size:5
Alignment explanation
Indices: 68346773--68346854 Score: 67
Period size: 5 Copynumber: 15.6 Consensus size: 5
68346763 TTAAGATTTT
* * * *
68346773 TATTA TAATA TATTG TTTTA TTATTA TATTAA TATTA CATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA -TATTA TATT-A TATTA TATTA TATTA TATTA
*
68346825 TATTA TTATATA TTATTA TGTTA TA-TA TAT
1 TATTA -TAT-TA -TATTA TATTA TATTA TAT
68346855 AAAACAAAGA
Statistics
Matches: 62, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
4 4 0.06
5 38 0.61
6 14 0.23
7 6 0.10
ACGTcount: A:0.38, C:0.01, G:0.02, T:0.59
Consensus pattern (5 bp):
TATTA
Found at i:68346834 original size:18 final size:18
Alignment explanation
Indices: 68346772--68346854 Score: 64
Period size: 18 Copynumber: 4.5 Consensus size: 18
68346762 GTTAAGATTT
* * *
68346772 TTATTATAATATATTGTT
1 TTATTATATTATATTATA
68346790 TTA-T-TATTATATTAATA
1 TTATTATATTATATT-ATA
68346807 TTACATTATATTATATTATA
1 TT--ATTATATTATATTATA
*
68346827 TTATTATA-TATTATTATG
1 TTATTATATTA-TATTATA
68346845 TTATATATAT
1 TTAT-TATAT
68346855 AAAACAAAGA
Statistics
Matches: 53, Mismatches: 4, Indels: 14
0.75 0.06 0.20
Matches are distributed among these distances:
16 8 0.15
17 6 0.11
18 19 0.36
19 5 0.09
20 6 0.11
21 9 0.17
ACGTcount: A:0.37, C:0.01, G:0.02, T:0.59
Consensus pattern (18 bp):
TTATTATATTATATTATA
Found at i:68353148 original size:46 final size:46
Alignment explanation
Indices: 68353013--68353148 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
68353003 TTTGACATGA
* * * *
68353013 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTGTCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGT
**
68353059 TGCCATGGTGTCTTTCAACCATGGTCTTGTTCATTTCATATCAGGT
1 TGCCATGGTGTCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *
68353105 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTGTCTTTCAACCATGGTCTTACTCATTTCATATCAG
68353149 AGAGCACACT
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
45 4 0.05
46 75 0.95
ACGTcount: A:0.20, C:0.23, G:0.16, T:0.41
Consensus pattern (46 bp):
TGCCATGGTGTCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
Found at i:68358204 original size:46 final size:45
Alignment explanation
Indices: 68358145--68358326 Score: 229
Period size: 46 Copynumber: 4.0 Consensus size: 45
68358135 TTTGACATGA
* * * * *
68358145 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCATTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATTCAGGT
* * ***
68358191 TTCCATGGTGTCTTTCAACCATGGTCTTGTTCATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT-TCAGGT
*
68358237 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAAATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-ATTCAGGT
68358283 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT-TCAG
68358327 AGAGCACACT
Statistics
Matches: 120, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
45 7 0.06
46 112 0.93
47 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (45 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATTCAGGT
Found at i:68366809 original size:17 final size:17
Alignment explanation
Indices: 68366787--68366819 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
68366777 CAGTATGATT
68366787 ATATGTGATT-ATTTGAA
1 ATATGT-ATTGATTTGAA
68366804 ATATGTATTGATTTGA
1 ATATGTATTGATTTGA
68366820 TGTTGAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.48
Consensus pattern (17 bp):
ATATGTATTGATTTGAA
Found at i:68375920 original size:43 final size:43
Alignment explanation
Indices: 68375849--68375944 Score: 133
Period size: 43 Copynumber: 2.3 Consensus size: 43
68375839 GGATTATGTG
**
68375849 TAAGACCATA-TCTGGGATATGGCATCGATATGAGATTTCATA
1 TAAGACCATAGTCTGGGATATGGCATCGATATGAGATCCCATA
* *
68375891 TAAGACCATAGT-TGGGCTATTGGCATCGATATGAGATCCCATG
1 TAAGACCATAGTCTGGGATA-TGGCATCGATATGAGATCCCATA
68375934 TAAGACCATAG
1 TAAGACCATAG
68375945 AATATGGCAT
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
42 16 0.33
43 32 0.67
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (43 bp):
TAAGACCATAGTCTGGGATATGGCATCGATATGAGATCCCATA
Found at i:68378160 original size:22 final size:23
Alignment explanation
Indices: 68378134--68378179 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
68378124 CAACCAAACC
68378134 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
68378156 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
68378179 A
1 A
68378180 CGTTATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:68381422 original size:30 final size:30
Alignment explanation
Indices: 68381386--68381448 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
68381376 ACTTATTTTA
68381386 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
68381416 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
68381446 TTG
1 TTG
68381449 CTTATTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:68381602 original size:12 final size:12
Alignment explanation
Indices: 68381572--68381604 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
68381562 TATATATTTT
68381572 AAAATT-ATATA
1 AAAATTAATATA
68381583 AAAA-TAATATA
1 AAAATTAATATA
68381594 AAAATTAATAT
1 AAAATTAATAT
68381605 GGGCGGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:68384106 original size:3 final size:3
Alignment explanation
Indices: 68384100--68384157 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
68384090 ACTTTTTATT
68384100 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
68384148 ATA ATA ATA A
1 ATA ATA ATA A
68384158 AACTTTAAAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:68386702 original size:35 final size:35
Alignment explanation
Indices: 68386656--68386725 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
68386646 TTGCATGTTC
*
68386656 AATTTTGTTTTTTAGATTTCAATATCAATTACAGG
1 AATTTTGTTTTTGAGATTTCAATATCAATTACAGG
68386691 AATTTTGTTTTTGAGATTTCAATATCAATTACAGG
1 AATTTTGTTTTTGAGATTTCAATATCAATTACAGG
68386726 TGGAGCATGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.47
Consensus pattern (35 bp):
AATTTTGTTTTTGAGATTTCAATATCAATTACAGG
Found at i:68389084 original size:149 final size:149
Alignment explanation
Indices: 68388814--68389113 Score: 600
Period size: 149 Copynumber: 2.0 Consensus size: 149
68388804 TTCGACCTAA
68388814 TTGTATACCTTAACAAATGTTTTACCTATTCACTATACTTGAATTCTTACCTTTTCATGAGAAAG
1 TTGTATACCTTAACAAATGTTTTACCTATTCACTATACTTGAATTCTTACCTTTTCATGAGAAAG
68388879 TATAACTTTTACAATCTCTATCTTTTTCACAAGGTTGAAATAGAATCTTCCTTAGCTTTTGTAGC
66 TATAACTTTTACAATCTCTATCTTTTTCACAAGGTTGAAATAGAATCTTCCTTAGCTTTTGTAGC
68388944 TAAACTTGAAGCCTCTAGC
131 TAAACTTGAAGCCTCTAGC
68388963 TTGTATACCTTAACAAATGTTTTACCTATTCACTATACTTGAATTCTTACCTTTTCATGAGAAAG
1 TTGTATACCTTAACAAATGTTTTACCTATTCACTATACTTGAATTCTTACCTTTTCATGAGAAAG
68389028 TATAACTTTTACAATCTCTATCTTTTTCACAAGGTTGAAATAGAATCTTCCTTAGCTTTTGTAGC
66 TATAACTTTTACAATCTCTATCTTTTTCACAAGGTTGAAATAGAATCTTCCTTAGCTTTTGTAGC
68389093 TAAACTTGAAGCCTCTAGC
131 TAAACTTGAAGCCTCTAGC
68389112 TT
1 TT
68389114 TTACAAGGCT
Statistics
Matches: 151, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
149 151 1.00
ACGTcount: A:0.29, C:0.19, G:0.11, T:0.41
Consensus pattern (149 bp):
TTGTATACCTTAACAAATGTTTTACCTATTCACTATACTTGAATTCTTACCTTTTCATGAGAAAG
TATAACTTTTACAATCTCTATCTTTTTCACAAGGTTGAAATAGAATCTTCCTTAGCTTTTGTAGC
TAAACTTGAAGCCTCTAGC
Found at i:68390048 original size:61 final size:61
Alignment explanation
Indices: 68389945--68390073 Score: 206
Period size: 61 Copynumber: 2.1 Consensus size: 61
68389935 AATAAAAATT
* *
68389945 TTCAAGCACAAATACTTAAACAAGACATAAACATATTGAATTTCAACAAGAGATATGACAA
1 TTCAAGCACAAATACTTAAACAAAACATAAACATATTAAATTTCAACAAGAGATATGACAA
* * *
68390006 TTCAAGCACAAATACTTATACAAAACATAAACATGTTAAATTTCAACAAGAGTTATGACAA
1 TTCAAGCACAAATACTTAAACAAAACATAAACATATTAAATTTCAACAAGAGATATGACAA
68390067 TT-AAGCA
1 TTCAAGCA
68390074 TTGGAGAAGT
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
60 5 0.08
61 58 0.92
ACGTcount: A:0.50, C:0.16, G:0.09, T:0.25
Consensus pattern (61 bp):
TTCAAGCACAAATACTTAAACAAAACATAAACATATTAAATTTCAACAAGAGATATGACAA
Found at i:68391142 original size:13 final size:13
Alignment explanation
Indices: 68391110--68391148 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
68391100 CTAACCTATT
68391110 AACTTAAGTT-TA
1 AACTTAAGTTCTA
*
68391122 ATCTTAAGTTCTA
1 AACTTAAGTTCTA
68391135 AACTTAAGTTCTA
1 AACTTAAGTTCTA
68391148 A
1 A
68391149 GTTTTAATCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 9 0.38
13 15 0.62
ACGTcount: A:0.38, C:0.13, G:0.08, T:0.41
Consensus pattern (13 bp):
AACTTAAGTTCTA
Found at i:68392064 original size:14 final size:14
Alignment explanation
Indices: 68392045--68392076 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
68392035 TCCAATCACC
68392045 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
68392059 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
68392073 GGGC
1 GGGC
68392077 TAAATGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:68396903 original size:14 final size:14
Alignment explanation
Indices: 68396884--68396915 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
68396874 TCCAATCACC
68396884 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
68396898 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
68396912 GGGC
1 GGGC
68396916 TAAATGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:68410204 original size:13 final size:13
Alignment explanation
Indices: 68410188--68410212 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68410178 TTCATTTTAG
68410188 TTTTTTTTTTTCT
1 TTTTTTTTTTTCT
68410201 TTTTTTTTTTTC
1 TTTTTTTTTTTC
68410213 CTTCTATGCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (13 bp):
TTTTTTTTTTTCT
Done.