Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 209 of 333
Found at i:68424401 original size:27 final size:27
Alignment explanation
Indices: 68424371--68424430 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
68424361 AATTTGAATT
*
68424371 AAAGACTTGATTTTATGATTTTGAAAC
1 AAAGACTTGATTTTATAATTTTGAAAC
*
68424398 AAAGATTTGATTTTATAATTTTGAAAC
1 AAAGACTTGATTTTATAATTTTGAAAC
68424425 AAAGAC
1 AAAGAC
68424431 ATAAGTGTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.42, C:0.07, G:0.13, T:0.38
Consensus pattern (27 bp):
AAAGACTTGATTTTATAATTTTGAAAC
Found at i:68428576 original size:169 final size:169
Alignment explanation
Indices: 68428292--68428600 Score: 519
Period size: 169 Copynumber: 1.8 Consensus size: 169
68428282 AAAACAATAT
* * * * * *
68428292 CAAAGATGGTATCGATAAAAATATAGTAGGTATCGGTATTTTTTGAAAAGTATTGATACTTTTTG
1 CAAAAATGGTATCGATAAAAATACAATAGGTATCGATATTTTTTGAAAAGTATCGATACTTTTTA
* * *
68428357 TTTTTGTTCAATTTTTGTTTTAAGTCAATAAGCAAGTTTGGTATCAATCTTTAAATAGGTATCAA
66 CTTTTGTTCAATTTTTGTTTCAAGTCAATAAGCAAGTTTGGTATCAATCTTGAAATAGGTATCAA
68428422 TAAAAATTGTGATTGTTTAAAAATCATTAAGTCATAATG
131 TAAAAATTGTGATTGTTTAAAAATCATTAAGTCATAATG
68428461 CAAAAATGGTATCGATAAAAATACAATAGGTATCGATATTTTTTGAAAAGTATCGATACTTTTTA
1 CAAAAATGGTATCGATAAAAATACAATAGGTATCGATATTTTTTGAAAAGTATCGATACTTTTTA
* *
68428526 CTTTTGTTCAATTTTTGTTTCAAGTCAGTAAGTAAGTTTGGTATCAATCTTGAAATAGGTATCAA
66 CTTTTGTTCAATTTTTGTTTCAAGTCAATAAGCAAGTTTGGTATCAATCTTGAAATAGGTATCAA
68428591 TAAAAATTGT
131 TAAAAATTGT
68428601 ATGAGTATCA
Statistics
Matches: 129, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
169 129 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (169 bp):
CAAAAATGGTATCGATAAAAATACAATAGGTATCGATATTTTTTGAAAAGTATCGATACTTTTTA
CTTTTGTTCAATTTTTGTTTCAAGTCAATAAGCAAGTTTGGTATCAATCTTGAAATAGGTATCAA
TAAAAATTGTGATTGTTTAAAAATCATTAAGTCATAATG
Found at i:68438917 original size:22 final size:20
Alignment explanation
Indices: 68438892--68438940 Score: 53
Period size: 22 Copynumber: 2.3 Consensus size: 20
68438882 AAATTTCGTT
68438892 ATTTTTAATTAAGTTAAAATTA
1 ATTTTTAA-TAAGTTAAAA-TA
**
68438914 ATTTTTTAATATTTTAAAATA
1 A-TTTTTAATAAGTTAAAATA
68438935 ATTTTT
1 ATTTTT
68438941 TTGTCATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 5 0.21
21 3 0.12
22 9 0.38
23 7 0.29
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (20 bp):
ATTTTTAATAAGTTAAAATA
Found at i:68443142 original size:14 final size:14
Alignment explanation
Indices: 68443123--68443153 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
68443113 CCGATAACTA
68443123 ATATATGGCATGTC
1 ATATATGGCATGTC
68443137 ATATATGGCATGTC
1 ATATATGGCATGTC
68443151 ATA
1 ATA
68443154 CTCAACCAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.35
Consensus pattern (14 bp):
ATATATGGCATGTC
Found at i:68443919 original size:28 final size:28
Alignment explanation
Indices: 68443887--68443960 Score: 73
Period size: 28 Copynumber: 2.7 Consensus size: 28
68443877 TTCAGATTAC
68443887 GCCACAAAGGCGTT-CTATTCCAAAG-ATA
1 GCCACAAAGGCGTTCCT-TT-CAAAGTATA
* * * *
68443915 GCCACAGAGGTGTTCCTTTCAAAGTCTC
1 GCCACAAAGGCGTTCCTTTCAAAGTATA
68443943 GCCACAAAGGCG-TCCTTT
1 GCCACAAAGGCGTTCCTTT
68443961 GATAGAGATT
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
27 11 0.29
28 25 0.66
29 2 0.05
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (28 bp):
GCCACAAAGGCGTTCCTTTCAAAGTATA
Found at i:68444008 original size:29 final size:28
Alignment explanation
Indices: 68443944--68444010 Score: 80
Period size: 29 Copynumber: 2.4 Consensus size: 28
68443934 CAAAGTCTCG
* *
68443944 CCACAAAGGCGTCCTTTGATAGAGATTA
1 CCACAAAGGCGTCCTTTAATAGAGATCA
* *
68443972 CCATAAAGGCTTCCTTTTAATAGAGATCA
1 CCACAAAGGCGTCC-TTTAATAGAGATCA
*
68444001 CTACAAAGGC
1 CCACAAAGGC
68444011 ATCCATTCAG
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 12 0.38
29 20 0.62
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.25
Consensus pattern (28 bp):
CCACAAAGGCGTCCTTTAATAGAGATCA
Found at i:68444701 original size:27 final size:27
Alignment explanation
Indices: 68444641--68444692 Score: 88
Period size: 27 Copynumber: 1.9 Consensus size: 27
68444631 TTAACATTTT
68444641 GACCATTTGGATTAATATTGAGACCAG
1 GACCATTTGGATTAATATTGAGACCAG
68444668 GACCATTTGGATT-ATCATTGAGACC
1 GACCATTTGGATTAAT-ATTGAGACC
68444693 GAGATCATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 2 0.08
27 22 0.92
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (27 bp):
GACCATTTGGATTAATATTGAGACCAG
Found at i:68448062 original size:39 final size:40
Alignment explanation
Indices: 68447965--68448064 Score: 132
Period size: 40 Copynumber: 2.5 Consensus size: 40
68447955 CGGATGATAA
* * * *
68447965 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGTAGTTGAGCGAGTTACTATAT
68448005 CCGGGCTAAGTCCCGAAGGTAGTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGTAGTTGAGCGAGTTA-CTATAT
*
68448045 CC-GGCTAAATCCCGAAGGTA
1 CCGGGCTAAGTCCCGAAGGTA
68448065 CTTGGTTTGG
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
39 19 0.35
40 35 0.65
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGTAGTTGAGCGAGTTACTATAT
Found at i:68455964 original size:39 final size:40
Alignment explanation
Indices: 68455827--68455964 Score: 217
Period size: 40 Copynumber: 3.5 Consensus size: 40
68455817 CGGATGATAA
68455827 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
68455867 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
68455907 CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
68455947 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
68455965 TACTTGGTTT
Statistics
Matches: 92, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 17 0.18
40 75 0.82
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:68464894 original size:3 final size:3
Alignment explanation
Indices: 68464886--68464916 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
68464876 CTCTTAAAAC
68464886 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
68464917 CACTATGTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:68475814 original size:6 final size:6
Alignment explanation
Indices: 68475803--68475875 Score: 58
Period size: 6 Copynumber: 11.7 Consensus size: 6
68475793 TAATTTAGCC
* * * *
68475803 TTTTTA TTTTTA -TTTTA TTTTTT TGTTTTAA TTTTAA TTTTAA TTTTAA
1 TTTTTA TTTTTA TTTTTA TTTTTA T-TTTT-A TTTTTA TTTTTA TTTTTA
*
68475852 TTTTTA TATTTTAA TTTTTC TTTT
1 TTTTTA T-TTTT-A TTTTTA TTTT
68475876 GTTTGATTCT
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
5 5 0.09
6 34 0.60
7 15 0.26
8 3 0.05
ACGTcount: A:0.21, C:0.01, G:0.01, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:68475825 original size:19 final size:19
Alignment explanation
Indices: 68475803--68475869 Score: 73
Period size: 19 Copynumber: 3.5 Consensus size: 19
68475793 TAATTTAGCC
* * *
68475803 TTTTTATTTTTATTTTATT
1 TTTTAATTTTAATTTTATA
**
68475822 TTTTTGTTTTAATTTTA-A
1 TTTTAATTTTAATTTTATA
68475840 TTTTAATTTTAATTTTTATA
1 TTTTAATTTTAA-TTTTATA
68475860 TTTTAATTTT
1 TTTTAATTTT
68475870 TCTTTTGTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
18 10 0.24
19 20 0.49
20 11 0.27
ACGTcount: A:0.22, C:0.00, G:0.01, T:0.76
Consensus pattern (19 bp):
TTTTAATTTTAATTTTATA
Found at i:68475875 original size:20 final size:19
Alignment explanation
Indices: 68475828--68475869 Score: 68
Period size: 20 Copynumber: 2.2 Consensus size: 19
68475818 TATTTTTTTG
68475828 TTTTAA-TTTTAATTTTAA
1 TTTTAATTTTTAATTTTAA
68475846 TTTTAATTTTTATATTTTAA
1 TTTTAATTTTTA-ATTTTAA
68475866 TTTT
1 TTTT
68475870 TCTTTTGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 6 0.27
19 5 0.23
20 11 0.50
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTTAATTTTTAATTTTAA
Found at i:68480177 original size:45 final size:45
Alignment explanation
Indices: 68480128--68480317 Score: 172
Period size: 45 Copynumber: 4.2 Consensus size: 45
68480118 AGCAACAATT
* *
68480128 TTATTTATTTCTAGAAT-GATGCCATAGTGTCTTTCAACTATGGTC
1 TTATTCATTTCTAGTATAG-TGCCATAGTGTCTTTCAACTATGGTC
* * * *
68480173 TTATTCATTTCCT--TCATATTGCCATAATTTTTTTCAACTATGGTC
1 TTATTCATTT-CTAGT-ATAGTGCCATAGTGTCTTTCAACTATGGTC
* * * * *
68480218 TTATTTAATTCTAGTATAGTGACGTAGTCTCTTTCAACTATGGTC
1 TTATTCATTTCTAGTATAGTGCCATAGTGTCTTTCAACTATGGTC
* * * *
68480263 TTATTCATTT-TCGGTATAATGTCATAGTGACTTTCAACTATGGTC
1 TTATTCATTTCT-AGTATAGTGCCATAGTGTCTTTCAACTATGGTC
*
68480308 TTACTCATTT
1 TTATTCATTT
68480318 GATTTATGAT
Statistics
Matches: 116, Mismatches: 23, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
44 3 0.03
45 110 0.95
46 3 0.03
ACGTcount: A:0.24, C:0.17, G:0.13, T:0.47
Consensus pattern (45 bp):
TTATTCATTTCTAGTATAGTGCCATAGTGTCTTTCAACTATGGTC
Found at i:68481449 original size:18 final size:19
Alignment explanation
Indices: 68481419--68481456 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
68481409 ATCAAAGTGA
*
68481419 TTTTATTTAGTTTTTGTTT
1 TTTTATTTAGTTTTTATTT
68481438 TTTTATTT-GTTTTTATTT
1 TTTTATTTAGTTTTTATTT
68481456 T
1 T
68481457 ATTTTTCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.11, C:0.00, G:0.08, T:0.82
Consensus pattern (19 bp):
TTTTATTTAGTTTTTATTT
Found at i:68490073 original size:6 final size:6
Alignment explanation
Indices: 68490062--68490092 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
68490052 AACCCTGGAT
68490062 TCTTGG TCTTGG TCTTGG TCTTTGG TCTTGG
1 TCTTGG TCTTGG TCTTGG TC-TTGG TCTTGG
68490093 AATCACATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.00, C:0.16, G:0.32, T:0.52
Consensus pattern (6 bp):
TCTTGG
Found at i:68490088 original size:13 final size:12
Alignment explanation
Indices: 68490062--68490092 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
68490052 AACCCTGGAT
68490062 TCTTGGTCTTGG
1 TCTTGGTCTTGG
68490074 TCTTGGTCTTTGG
1 TCTTGGTC-TTGG
68490087 TCTTGG
1 TCTTGG
68490093 AATCACATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 8 0.44
13 10 0.56
ACGTcount: A:0.00, C:0.16, G:0.32, T:0.52
Consensus pattern (12 bp):
TCTTGGTCTTGG
Found at i:68498064 original size:18 final size:20
Alignment explanation
Indices: 68498018--68498065 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 20
68498008 GATAAAAGTT
68498018 TTTTATTTTTATAAAATAGTA
1 TTTTATTTTTATAAAATAG-A
* *
68498039 TATTATTTTTA-AAGATA-A
1 TTTTATTTTTATAAAATAGA
68498057 TTTTATTTT
1 TTTTATTTT
68498066 CACAAAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 9 0.38
20 5 0.21
21 10 0.42
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.60
Consensus pattern (20 bp):
TTTTATTTTTATAAAATAGA
Found at i:68500406 original size:3 final size:3
Alignment explanation
Indices: 68500398--68500436 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
68500388 CTTCTTTCTC
68500398 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
68500437 TAACCAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:68513308 original size:46 final size:46
Alignment explanation
Indices: 68513258--68513479 Score: 270
Period size: 46 Copynumber: 4.8 Consensus size: 46
68513248 TGGTTGAGCA
*
68513258 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
68513304 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
68513350 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* *
68513397 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
68513443 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68513480 GCGGGTTACA
Statistics
Matches: 151, Mismatches: 18, Indels: 14
0.83 0.10 0.08
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 1 0.01
46 109 0.72
47 33 0.22
48 1 0.01
49 2 0.01
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:68513427 original size:93 final size:93
Alignment explanation
Indices: 68513304--68513472 Score: 284
Period size: 93 Copynumber: 1.8 Consensus size: 93
68513294 GATGTGAATG
* * *
68513304 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTTGA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACGCCCGAACTCGTTGAGTTGA
68513369 GTCCGAGTTCGAGAGATGTAACTAGGCA
66 GTCCGAGTTCGAGAGATGTAACTAGGCA
* *
68513397 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAGCTCGTTGAGTTGA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACGCCCGAACTCGTTGAGTTGA
*
68513462 GTCTGAGTTCG
66 GTCCGAGTTCG
68513473 CTTATGGGCG
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACGCCCGAACTCGTTGAGTTGA
GTCCGAGTTCGAGAGATGTAACTAGGCA
Found at i:68516456 original size:15 final size:15
Alignment explanation
Indices: 68516417--68516496 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
68516407 GTATCTTGGT
*
68516417 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
68516432 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
68516447 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
68516462 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
68516477 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
68516491 TTTCTT
1 TTTCTT
68516497 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:68516486 original size:30 final size:30
Alignment explanation
Indices: 68516408--68516495 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
68516398 CATAGTATCG
* * *
68516408 TATCTTGGTTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
68516438 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
68516468 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
68516496 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.15, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:68518921 original size:46 final size:46
Alignment explanation
Indices: 68518871--68519092 Score: 270
Period size: 46 Copynumber: 4.8 Consensus size: 46
68518861 TGGTTGAGCA
68518871 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
68518917 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATCGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
68518963 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* * *
68519010 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGAATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
68519056 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68519093 GCGGGTTACA
Statistics
Matches: 150, Mismatches: 19, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 2 0.01
46 109 0.73
47 31 0.21
48 1 0.01
49 2 0.01
50 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:68519040 original size:93 final size:93
Alignment explanation
Indices: 68518917--68519085 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
68518907 GATGCGAATG
* * *
68518917 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATCG-ATGCAAATGTCCGAACTCGTTGAGTTG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTAT-GAATGCAAACGCCCGAACTCGTTGAGTTG
68518981 AGTCCGAGTTCGAGAGATGTAACTAGGCA
65 AGTCCGAGTTCGAGAGATGTAACTAGGCA
* *
68519010 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGAATGCGAACGCCCGAGCTCGTTGAGTTGA
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGAATGCAAACGCCCGAACTCGTTGAGTTGA
68519075 GTCCGAGTTCG
66 GTCCGAGTTCG
68519086 CTTATGGGCG
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 69 0.99
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGAATGCAAACGCCCGAACTCGTTGAGTTGA
GTCCGAGTTCGAGAGATGTAACTAGGCA
Found at i:68521409 original size:18 final size:18
Alignment explanation
Indices: 68521382--68521416 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
68521372 GATATGGTTG
*
68521382 GAGTTGATAAAAGACTAT
1 GAGTTAATAAAAGACTAT
*
68521400 GAGTTAATAATAGACTA
1 GAGTTAATAAAAGACTA
68521417 CCGCCCGGTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.06, G:0.20, T:0.29
Consensus pattern (18 bp):
GAGTTAATAAAAGACTAT
Found at i:68525515 original size:41 final size:40
Alignment explanation
Indices: 68525453--68525532 Score: 108
Period size: 40 Copynumber: 1.9 Consensus size: 40
68525443 AAGATTTTTA
*
68525453 GACACGGGCTAGGACACGGGC-GTGTCATGGCCGTGTGAGG
1 GACACGGGCCAGGACACGGGCGGTGTCA-GGCCGTGTGAGG
*
68525493 GACACGGGCCATGGACATGGGCGTGTGTCAGGCCGTGTGA
1 GACACGGGCCA-GGACACGGGCG-GTGTCAGGCCGTGTGA
68525533 AAAGCCTGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 10 0.29
41 9 0.26
42 10 0.29
43 6 0.17
ACGTcount: A:0.17, C:0.23, G:0.44, T:0.16
Consensus pattern (40 bp):
GACACGGGCCAGGACACGGGCGGTGTCAGGCCGTGTGAGG
Found at i:68532840 original size:48 final size:48
Alignment explanation
Indices: 68532784--68532985 Score: 175
Period size: 48 Copynumber: 4.3 Consensus size: 48
68532774 CCCGGATATA
*
68532784 GTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCTAGACATG
1 GTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATG
* * * * *
68532832 GTCTTACATGGGACCATAGATCAATGCCAATGCCATGTCCCAAACACT-
1 GTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA-TG
* ** * * *
68532880 GTCTTCCATAAGATCACATATTGATGCCGAT---A-G-CCCAG-CTATA
1 GTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGAC-ATG
* ** * * *
68532923 GTCTTACACGAAATTATATATCGATGCCAAAGCCATGTCCCAGACATG
1 GTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATG
68532971 GTCTTACATGGGATC
1 GTCTTACATGGGATC
68532986 GTACATGAAC
Statistics
Matches: 115, Mismatches: 30, Indels: 18
0.71 0.18 0.11
Matches are distributed among these distances:
42 2 0.02
43 27 0.23
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 80 0.70
49 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (48 bp):
GTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATG
Found at i:68540821 original size:16 final size:15
Alignment explanation
Indices: 68540796--68540829 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
68540786 AAAGTTGATA
*
68540796 ATAATTAATATATATT
1 ATAATAAATATA-ATT
68540812 ATAATAAATATAATT
1 ATAATAAATATAATT
68540827 ATA
1 ATA
68540830 TACTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:68551652 original size:31 final size:32
Alignment explanation
Indices: 68551590--68551656 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
68551580 TTGTTGTGGA
68551590 TTGAATTGGTTAGGTGTTTAAGTAAAATTTTT
1 TTGAATTGGTTAGGTGTTTAAGTAAAATTTTT
*
68551622 TTGAATTGGTTAGGTGTTTAAGTAAATTTTTT
1 TTGAATTGGTTAGGTGTTTAAGTAAAATTTTT
68551654 TTG
1 TTG
68551657 TTGCATTAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.25, C:0.00, G:0.22, T:0.52
Consensus pattern (32 bp):
TTGAATTGGTTAGGTGTTTAAGTAAAATTTTT
Found at i:68551669 original size:32 final size:31
Alignment explanation
Indices: 68551594--68551669 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 31
68551584 TGTGGATTGA
*
68551594 ATTGGTTAGGTGTTTAAGTAAAATTTTTTTG
1 ATTGATTAGGTGTTTAAGTAAAATTTTTTTG
* *
68551625 AATTGGTTAGGTGTTTAAGTAAATTTTTTTTG
1 -ATTGATTAGGTGTTTAAGTAAAATTTTTTTG
68551657 -TTGCATTAAGGTG
1 ATTG-ATT-AGGTG
68551670 CCATTTTGGC
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
30 3 0.08
31 2 0.05
32 35 0.88
ACGTcount: A:0.25, C:0.01, G:0.24, T:0.50
Consensus pattern (31 bp):
ATTGATTAGGTGTTTAAGTAAAATTTTTTTG
Found at i:68587425 original size:12 final size:12
Alignment explanation
Indices: 68587408--68587432 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
68587398 TACGAATTTG
68587408 GCCAAATGTATT
1 GCCAAATGTATT
68587420 GCCAAATGTATT
1 GCCAAATGTATT
68587432 G
1 G
68587433 GCTTATATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (12 bp):
GCCAAATGTATT
Found at i:68601893 original size:43 final size:43
Alignment explanation
Indices: 68601846--68601983 Score: 126
Period size: 42 Copynumber: 3.2 Consensus size: 43
68601836 TCCTAGATGT
68601846 GGTCTTACATGTAA-TCAAATATCG-ATGCC-ACTGTCCCAGACAG
1 GGTCTTACATGTAACTCAAATA--GAATGCCGA-TGTCCCAGACAG
*
68601889 GGTCTTACATG-AACTCAAATAGAATGCCGATGTCCCAGACAT
1 GGTCTTACATGTAACTCAAATAGAATGCCGATGTCCCAGACAG
* * * * *
68601931 GGTCTTACACGTAAATCTCAAATTG-ATGCCAATATCTCAGAC-G
1 GGTCTTACATGT-AA-CTCAAATAGAATGCCGATGTCCCAGACAG
68601974 TGGTCTTACA
1 -GGTCTTACA
68601984 CGAAATCACA
Statistics
Matches: 81, Mismatches: 7, Indels: 13
0.80 0.07 0.13
Matches are distributed among these distances:
41 1 0.01
42 28 0.35
43 19 0.23
44 25 0.31
45 8 0.10
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (43 bp):
GGTCTTACATGTAACTCAAATAGAATGCCGATGTCCCAGACAG
Found at i:68601972 original size:44 final size:45
Alignment explanation
Indices: 68601870--68601990 Score: 126
Period size: 44 Copynumber: 2.8 Consensus size: 45
68601860 TCAAATATCG
* * * *
68601870 ATGCCACTGTCCCAGACAGGGTCTTACA--TGAA-CTCAAATAGA
1 ATGCCAATATCCCAGACATGGTCTTACACGTAAATCTCAAATAGA
* * *
68601912 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCTCAAATTG-
1 ATGCCAATATCCCAGACATGGTCTTACACGTAAATCTCAAATAGA
* *
68601956 ATGCCAATATCTCAGACGTGGTCTTACACG-AAATC
1 ATGCCAATATCCCAGACATGGTCTTACACGTAAATC
68601991 ACATATCGGA
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
42 25 0.37
43 5 0.07
44 29 0.43
45 8 0.12
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (45 bp):
ATGCCAATATCCCAGACATGGTCTTACACGTAAATCTCAAATAGA
Found at i:68617049 original size:35 final size:35
Alignment explanation
Indices: 68617003--68617075 Score: 128
Period size: 35 Copynumber: 2.1 Consensus size: 35
68616993 TTGGTTCCTA
68617003 CTACTGTTCTTCTCCTTTCCATACAGAACGTTGCT
1 CTACTGTTCTTCTCCTTTCCATACAGAACGTTGCT
* *
68617038 CTACTGTTCTTCTCCTTTTCATACAGAACGTTGTT
1 CTACTGTTCTTCTCCTTTCCATACAGAACGTTGCT
68617073 CTA
1 CTA
68617076 TGTCTAGAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.18, C:0.29, G:0.11, T:0.42
Consensus pattern (35 bp):
CTACTGTTCTTCTCCTTTCCATACAGAACGTTGCT
Found at i:68620333 original size:46 final size:47
Alignment explanation
Indices: 68620276--68620502 Score: 182
Period size: 46 Copynumber: 4.9 Consensus size: 47
68620266 GCTGTTAAGT
* * *
68620276 GAGCCAGTGTAAGGCATGTCTGGGACATGCATC-GACATTGAGACG-A
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAG-CATCGAGACGTA
* *
68620322 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGACGTA
* *
68620369 -AGGTAGTGTAAGACATGTCTGGGACATGCATCCGC-TACGAGA--T-
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAT-CGAGACGTA
* * * * * *
68620412 GTGCTAGTGTAAGACATGCCTGAGACATGCATCGGCA-CAGATATGTGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCATC-GAGACGT-A
* * * * *
68620460 GAGCCAGTGTAAGACCATATTTGGGATATGGCATCGGCATCGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCATCGA
68620503 TATGTGTAAG
Statistics
Matches: 148, Mismatches: 20, Indels: 22
0.78 0.11 0.12
Matches are distributed among these distances:
43 1 0.01
44 34 0.23
45 1 0.01
46 77 0.52
47 2 0.01
48 12 0.08
49 9 0.06
50 11 0.07
51 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.22
Consensus pattern (47 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGACGTA
Found at i:68620439 original size:44 final size:45
Alignment explanation
Indices: 68620281--68620444 Score: 190
Period size: 46 Copynumber: 3.6 Consensus size: 45
68620271 TAAGTGAGCC
* * * * *
68620281 AGTGTAAGGCATGTCTGGGACATGCATC-GACATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CCTCGAGATG-TAGCT
*
68620327 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTAAGGT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGT-AGCT
*
68620373 AGTGTAAGACATGTCTGGGACATGCATCCG-CTACGAGATGT-GCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCT-CGAGATGTAGCT
* *
68620417 AGTGTAAGACATGCCTGAGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
68620445 GGCACAGATA
Statistics
Matches: 105, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
44 28 0.27
45 2 0.02
46 74 0.70
47 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTAGCT
Found at i:68620469 original size:92 final size:92
Alignment explanation
Indices: 68620276--68620474 Score: 221
Period size: 90 Copynumber: 2.2 Consensus size: 92
68620266 GCTGTTAAGT
* *
68620276 GAGCCAGTGTAAGGCATGTCTGGGACATGCATCGACATTGAGACGAGAGCTAGTGTAAGACATGT
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGACA-TGAGACGAGAGCTAGTGTAAGACATGC
* *
68620341 CTGGGACATGCATCAGCCTCGAGATGTA
65 CTGAGACATGCATCAGCCTAGAGATGTA
** *
68620369 -AGGTAGTGTAAGACATGTCTGGGACATGCATCCG-C-T-ACGA-GATGTGCTAGTGTAAGACAT
1 GAGCCAGTGTAAGACATGTCTGGGACATGCAT-CGACATGA-GACGA-GAGCTAGTGTAAGACAT
* *
68620429 GCCTGAGACATGCATCGGCAC-AGATATGTGA
63 GCCTGAGACATGCATCAGC-CTAGAGATGT-A
68620460 GAGCCAGTGTAAGAC
1 GAGCCAGTGTAAGAC
68620475 CATATTTGGG
Statistics
Matches: 89, Mismatches: 11, Indels: 13
0.79 0.10 0.12
Matches are distributed among these distances:
89 3 0.03
90 41 0.46
91 2 0.02
92 41 0.46
93 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.31, T:0.22
Consensus pattern (92 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGACATGAGACGAGAGCTAGTGTAAGACATGCC
TGAGACATGCATCAGCCTAGAGATGTA
Found at i:68624621 original size:31 final size:31
Alignment explanation
Indices: 68624581--68624692 Score: 208
Period size: 31 Copynumber: 3.6 Consensus size: 31
68624571 TTAGTCTTGA
*
68624581 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
68624611 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
68624642 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
68624673 CATATCACTGGGCCGAAGCC
1 CATATCACTGGGCCGAAGCC
68624693 GTTACTGTAA
Statistics
Matches: 80, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
30 5 0.06
31 75 0.94
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.26
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:68624766 original size:42 final size:42
Alignment explanation
Indices: 68624719--68624852 Score: 250
Period size: 42 Copynumber: 3.2 Consensus size: 42
68624709 TGGCCCTTAG
*
68624719 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
68624761 GCCCATTTCAATATTACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
68624803 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
68624845 GCCCATTT
1 GCCCATTT
68624853 GGGGAGACTA
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 89 1.00
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:68625028 original size:25 final size:25
Alignment explanation
Indices: 68625000--68625057 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 25
68624990 CTCTTTTAAT
68625000 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
* *
68625025 AACTGGGGCAAATCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
68625050 AACTGGGG
1 AACTGGGG
68625058 TAGAGCCCGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 26 0.87
26 4 0.13
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:68625909 original size:27 final size:27
Alignment explanation
Indices: 68625879--68625942 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
68625869 GGCATATTCC
68625879 TCATTTTACCATACAAGG-G-TATTACGG
1 TCATTTTACCATAC-AGGAGCT-TTACGG
*
68625906 TCATTTTACCTTACAGGAGCTTTACGG
1 TCATTTTACCATACAGGAGCTTTACGG
*
68625933 TCTTTTTACC
1 TCATTTTACC
68625943 TATTAGGGGT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 3 0.09
27 29 0.88
28 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (27 bp):
TCATTTTACCATACAGGAGCTTTACGG
Found at i:68626016 original size:27 final size:27
Alignment explanation
Indices: 68625986--68626037 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
68625976 GGGTGTTTTG
68625986 GTAAATCTATAAACCAAGGGTATTTCA
1 GTAAATCTATAAACCAAGGGTATTTCA
* * * *
68626013 GTAATTTTGTAAACCAATGGTATTT
1 GTAAATCTATAAACCAAGGGTATTT
68626038 TTATAATTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (27 bp):
GTAAATCTATAAACCAAGGGTATTTCA
Found at i:68626044 original size:27 final size:27
Alignment explanation
Indices: 68625995--68626103 Score: 89
Period size: 27 Copynumber: 4.0 Consensus size: 27
68625985 GGTAAATCTA
*
68625995 TAAACCAAGGGTA-TTTCAGTAATTTTG
1 TAAACCAAGGGTATTTTTA-TAATTTTG
*
68626022 TAAACCAATGGTATTTTTATAATTTT-
1 TAAACCAAGGGTATTTTTATAATTTTG
* *
68626048 TAGAAAGTCAAGGGTATTTCTATAATTTTG
1 T--AAA-CCAAGGGTATTTTTATAATTTTG
* **
68626078 TAAATC-AGGGTTATTTTGGTAATTTT
1 TAAACCAAGGG-TATTTTTATAATTTT
68626104 ACAAATTGAG
Statistics
Matches: 68, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
26 5 0.07
27 33 0.49
28 10 0.15
29 19 0.28
30 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.17, T:0.44
Consensus pattern (27 bp):
TAAACCAAGGGTATTTTTATAATTTTG
Found at i:68626109 original size:27 final size:27
Alignment explanation
Indices: 68626070--68626197 Score: 122
Period size: 27 Copynumber: 4.8 Consensus size: 27
68626060 GGTATTTCTA
**
68626070 TAATTTTGTAAATC-AGGGTTATTTTGG
1 TAATTTTACAAATCTAGGG-TATTTTGG
68626097 TAATTTTACAAAT-TGAGGGTATTTTGG
1 TAATTTTACAAATCT-AGGGTATTTTGG
* *
68626124 TAATTTCACAAA-CTAGTGGTATTTAGG
1 TAATTTTACAAATCTAG-GGTATTTTGG
*
68626151 TAATTTTACAAA-CTAGGGGTATTTTAG
1 TAATTTTACAAATCTA-GGGTATTTTGG
* *
68626178 TAATTTCAC-AATCGAGGGTA
1 TAATTTTACAAATCTAGGGTA
68626198 AAACGGTAAT
Statistics
Matches: 86, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
26 9 0.10
27 72 0.84
28 5 0.06
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
TAATTTTACAAATCTAGGGTATTTTGG
Found at i:68626217 original size:27 final size:27
Alignment explanation
Indices: 68626187--68626384 Score: 279
Period size: 27 Copynumber: 7.3 Consensus size: 27
68626177 GTAATTTCAC
68626187 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
68626214 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
68626241 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
68626268 AATCAAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
68626295 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
68626322 AATCGAGGGTGAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
68626349 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
68626376 AATCGAGGG
1 AATCGAGGG
68626385 CATTTCAATA
Statistics
Matches: 149, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 149 1.00
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:68626404 original size:81 final size:81
Alignment explanation
Indices: 68626187--68626384 Score: 360
Period size: 81 Copynumber: 2.4 Consensus size: 81
68626177 GTAATTTCAC
*
68626187 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTG
*
68626252 AAACGGTAATTCTATA
66 AAACGATAATTCTATA
*
68626268 AATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTG
68626333 AAACGATAATTCTATA
66 AAACGATAATTCTATA
*
68626349 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
68626385 CATTTCAATA
Statistics
Matches: 112, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 112 1.00
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTG
AAACGATAATTCTATA
Found at i:68628298 original size:19 final size:19
Alignment explanation
Indices: 68628274--68628313 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
68628264 CTCCAAAAAC
68628274 TTGTTCAACCGTCAGAGGT
1 TTGTTCAACCGTCAGAGGT
**
68628293 TTGTTCAAGTGTCAGAGGT
1 TTGTTCAACCGTCAGAGGT
68628312 TT
1 TT
68628314 CCCAGTCTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.20, C:0.15, G:0.28, T:0.38
Consensus pattern (19 bp):
TTGTTCAACCGTCAGAGGT
Found at i:68630077 original size:27 final size:27
Alignment explanation
Indices: 68630046--68630223 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
68630036 TAAATTGTAC
*
68630046 AGCACTAAGTGTGCGATTTGACTGTGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
68630073 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68630099 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
68630127 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
68630155 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68630182 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
68630209 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68630224 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:68630163 original size:82 final size:81
Alignment explanation
Indices: 68630047--68630202 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
68630037 AAATTGTACA
* * *
68630047 GCACTAAGTGTGCGATTTGACTGTGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
68630111 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
68630128 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
68630193 TGCGAGTTGA
65 TGCGAATTGA
68630203 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:68630214 original size:82 final size:81
Alignment explanation
Indices: 68630043--68630223 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
68630033 GATTAAATTG
* * *
68630043 TACAGCACTAAGTGTGCGATTTGACTGTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
68630108 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
68630124 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
68630188 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
68630206 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
68630224 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:68637615 original size:11 final size:10
Alignment explanation
Indices: 68637599--68637632 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 10
68637589 ACATATGCTC
68637599 TCTTTTTTTCT
1 TCTTTTTTT-T
68637610 TCTTTTTCTTT
1 TCTTTTT-TTT
68637621 TCTTTTTTTT
1 TCTTTTTTTT
68637631 TC
1 TC
68637633 ACTAGCATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 5 0.23
11 15 0.68
12 2 0.09
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (10 bp):
TCTTTTTTTT
Found at i:68638880 original size:3 final size:3
Alignment explanation
Indices: 68638872--68638945 Score: 85
Period size: 3 Copynumber: 24.7 Consensus size: 3
68638862 CTTTGGGATC
* * * * * * *
68638872 TTA TTA TTA TTA TTA TTA TTA TTA TTC TTT TTC TTC TTC TTC TTT TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
68638920 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
68638946 CTTCAAGATC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:68639896 original size:25 final size:25
Alignment explanation
Indices: 68639842--68639899 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
68639832 GAATAAGTGT
* *
68639842 AAAATATT-AATAATTCAATAATTTG
1 AAAAT-TTAAATAATTAAATAACTTG
68639867 AAAATTTAAATAATTAAATAAACTTG
1 AAAATTTAAATAATTAAAT-AACTTG
68639893 -AAATTTA
1 AAAATTTA
68639900 GGAGAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 2 0.07
25 22 0.76
26 5 0.17
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.38
Consensus pattern (25 bp):
AAAATTTAAATAATTAAATAACTTG
Found at i:68640712 original size:29 final size:30
Alignment explanation
Indices: 68640657--68640714 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
68640647 GCCTTTCGAA
* *
68640657 AATATTTACAAAAAGCGACATCTAATTTTT
1 AATATTTACAAAAAGCGACACCAAATTTTT
68640687 AATATTTACAAAAGAGC-A-ACCAAATTTT
1 AATATTTACAAAA-AGCGACACCAAATTTT
68640715 CAAAATAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 8 0.32
30 14 0.56
31 3 0.12
ACGTcount: A:0.47, C:0.14, G:0.07, T:0.33
Consensus pattern (30 bp):
AATATTTACAAAAAGCGACACCAAATTTTT
Found at i:68643632 original size:25 final size:25
Alignment explanation
Indices: 68643422--68643620 Score: 303
Period size: 25 Copynumber: 8.0 Consensus size: 25
68643412 GTTAACTTGC
68643422 TCTTAATAA-TTCTGGTTAAATTTGT
1 TCTTAATAATTTC-GGTTAAATTTGT
* *
68643447 TCTTAATAATTCCGGTTAAATTTGC
1 TCTTAATAATTTCGGTTAAATTTGT
* *
68643472 TCTTAATAATTCCGATTAAATTTGT
1 TCTTAATAATTTCGGTTAAATTTGT
68643497 TCTTAATAATTTCGGTTAAATTTGT
1 TCTTAATAATTTCGGTTAAATTTGT
*
68643522 TCTTAATAATTCCGGTTAAATTTGT
1 TCTTAATAATTTCGGTTAAATTTGT
68643547 TCTTAATAA-TTCTGGTTAAATTTGT
1 TCTTAATAATTTC-GGTTAAATTTGT
*
68643572 TCTTAATAATTTCGGTTAAATTTGC
1 TCTTAATAATTTCGGTTAAATTTGT
*
68643597 TCTTAATATTTTCGGTTAAATTTG
1 TCTTAATAATTTCGGTTAAATTTG
68643621 CCCTTATTAT
Statistics
Matches: 161, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
24 2 0.01
25 154 0.96
26 5 0.03
ACGTcount: A:0.28, C:0.11, G:0.12, T:0.50
Consensus pattern (25 bp):
TCTTAATAATTTCGGTTAAATTTGT
Found at i:68644503 original size:45 final size:45
Alignment explanation
Indices: 68644439--68644734 Score: 415
Period size: 45 Copynumber: 6.6 Consensus size: 45
68644429 TATCGTACAG
*
68644439 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGA
68644484 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC-AGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGA-TGAGA
* * *
68644529 TACTATTCGGGCCTTTGAGCTTCGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGA
*
68644574 TACTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCC-AGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGA-TGAGA
** *
68644619 TACTATTCGGGCCTTTGAGCCTATTAGGCTATAATGCCAATGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGA
* * *
68644664 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGTCGGTGA-A
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGA
*
68644708 TGA-TA-TCGGG-CTTCGAGCCTAGCAGGC
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGC
68644735 AAAATACCGG
Statistics
Matches: 229, Mismatches: 17, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
42 17 0.07
43 5 0.02
44 5 0.02
45 201 0.88
46 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGA
Found at i:68650235 original size:43 final size:44
Alignment explanation
Indices: 68650169--68650295 Score: 118
Period size: 45 Copynumber: 2.9 Consensus size: 44
68650159 ATTTCTCAAA
* * * *
68650169 TCACTGGCATT-TTGCCTGTTAGGCTCG-AGGCCCGATATCAG-T-
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCC-AAAT-AGATC
68650211 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCAAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCAAATAG-ATC
** * * *
68650256 TCACCGGCATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCAAATA
68650296 ATCAACTCAA
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
42 12 0.17
43 17 0.24
44 7 0.10
45 35 0.49
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCAAATAGATC
Found at i:68650660 original size:43 final size:43
Alignment explanation
Indices: 68650612--68650822 Score: 334
Period size: 43 Copynumber: 4.9 Consensus size: 43
68650602 ACATATCATT
* *
68650612 TCACCGGCATTACA-CCTGCTAGGCACGAAGGTCCGAATACACA
1 TCACCGGCACTA-AGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
68650655 TCACCGGCACGAAGGCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
*
68650698 TCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
** *
68650741 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCTTGAGTACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
68650784 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATA
68650823 TAATATCAGC
Statistics
Matches: 155, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
42 1 0.01
43 154 0.99
ACGTcount: A:0.29, C:0.33, G:0.25, T:0.13
Consensus pattern (43 bp):
TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
Found at i:68650872 original size:38 final size:38
Alignment explanation
Indices: 68650815--68650898 Score: 116
Period size: 38 Copynumber: 2.2 Consensus size: 38
68650805 GGCACGAAGG
* * *
68650815 CCCGAATATAATATCAGCACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATATCAGCACGAAGCCTGCGGGATTTAA
*
68650853 CCCGGATATAATA-CTAGCACGAAGCCTGCGGGATTTAA
1 CCCGAATATAATATC-AGCACGAAGCCTGCGGGATTTAA
68650891 CCCGAATA
1 CCCGAATA
68650899 CACATCAAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
37 1 0.03
38 39 0.98
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (38 bp):
CCCGAATATAATATCAGCACGAAGCCTGCGGGATTTAA
Found at i:68685593 original size:27 final size:25
Alignment explanation
Indices: 68685562--68685631 Score: 68
Period size: 25 Copynumber: 2.7 Consensus size: 25
68685552 TGTTTACATT
*
68685562 AATTTAAATATATAATTTTAATATTCA
1 AATTTAAATATATAATTTT--TATTAA
** *
68685589 AATTTACTTATATTATTTTTATTAA
1 AATTTAAATATATAATTTTTATTAA
**
68685614 AAAATAAATATATAATTT
1 AATTTAAATATATAATTT
68685632 AAAATGTAGT
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
25 18 0.53
27 16 0.47
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (25 bp):
AATTTAAATATATAATTTTTATTAA
Found at i:68685946 original size:13 final size:14
Alignment explanation
Indices: 68685924--68685955 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
68685914 TCAACTATTC
68685924 TAAA-ATTTTAAT-
1 TAAATATTTTAATG
68685936 TAAATATTTTAATG
1 TAAATATTTTAATG
68685950 TAAATA
1 TAAATA
68685956 AAAATTGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 4 0.22
13 8 0.44
14 6 0.33
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (14 bp):
TAAATATTTTAATG
Found at i:68686299 original size:14 final size:14
Alignment explanation
Indices: 68686280--68686326 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
68686270 TAAAACTTAA
68686280 AATTTTTTATTATT
1 AATTTTTTATTATT
*
68686294 AATTTTTTA-GA-T
1 AATTTTTTATTATT
68686306 -A-TTTTTATTATT
1 AATTTTTTATTATT
68686318 AATTTTTTA
1 AATTTTTTA
68686327 GAAAATATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
10 6 0.22
11 2 0.07
12 2 0.07
13 2 0.07
14 15 0.56
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (14 bp):
AATTTTTTATTATT
Found at i:68686310 original size:24 final size:24
Alignment explanation
Indices: 68686283--68686328 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
68686273 AACTTAAAAT
68686283 TTTTTATTATTAATTTTTTAGATA
1 TTTTTATTATTAATTTTTTAGATA
68686307 TTTTTATTATTAATTTTTTAGA
1 TTTTTATTATTAATTTTTTAGA
68686329 AAATATAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.67
Consensus pattern (24 bp):
TTTTTATTATTAATTTTTTAGATA
Found at i:68687712 original size:249 final size:251
Alignment explanation
Indices: 68687324--68687973 Score: 912
Period size: 249 Copynumber: 2.6 Consensus size: 251
68687314 TATAGTTAGT
*
68687324 AAAAGTACTGAAAAAAGCTCCTAGCTGGACGCTCTTTTTGTACAGTTGTTTCTGAAAAATAATTT
1 AAAAGTACTGAAAAAAGCTCCCAGCTGGACGCTCTTTTTGTACAGTTGTTTCTGAAAAATAATTT
* ** * *
68687389 TGAGAAGATGGTTCT-AAAAAAAAGGTTGAAAAACACTTCAAGCAGGATGCACTGTCAACAAAAG
66 TGAGAAGATGGTTCTGAAAAAATAGGTTGAAAAATGCTTCAAGCAGGATGCACTGTTAGCAAAAG
* * *
68687453 TACTAAAAAAAACTCTCAGCTGGACGCTCTTTTTGTACAGTTGTTTCTGAAAAAATAATTTTGAG
131 TACTAAAAAAAACTCCCAACTAGACGCTCTTTTTGTACAGTTGTTTCTGAAAAAATAATTTTGAG
* *
68687518 AAGATTGTTCTGAAAAAATAGGTTTAAAAACGCTCCAAGCAAGATCCACTATCAGC
196 AAGATGGTTCTGAAAAAATAGGTTAAAAAACGCTCCAAGCAAGATCCACTATCAGC
* * * * *
68687574 AAAAGTACT-CAAAAAGCTCCCAGTTGGACG-TTTTTTTGTACAATTGCTTCTGAAAAATAATTT
1 AAAAGTACTGAAAAAAGCTCCCAGCTGGACGCTCTTTTTGTACAGTTGTTTCTGAAAAATAATTT
* *
68687637 TGAGAAGATGGTTGTGAAAAAATAGGTTGAAAAATGCTTCAAGCAAGATGCACTGTTAGCAAAAG
66 TGAGAAGATGGTTCTGAAAAAATAGGTTGAAAAATGCTTCAAGCAGGATGCACTGTTAGCAAAAG
*
68687702 TACTAAAAAAAGCTCCCAACTAGACGCTCTTTTTGTACAGTTGTTTCTGAAAAAATAATTTTGAG
131 TACTAAAAAAAACTCCCAACTAGACGCTCTTTTTGTACAGTTGTTTCTGAAAAAATAATTTTGAG
* * * * * * *
68687767 ATGATGGTTTTGGAAAAATAGGTTAAAAAACGCTTCAAGCAGGATGCACTGTCAGC
196 AAGATGGTTCTGAAAAAATAGGTTAAAAAACGCTCCAAGCAAGATCCACTATCAGC
* * * * *
68687823 AAAAGTATTGAAAAAAGCTCCCAACTAGACGCTCTTTTTGTATAGTTGTTTCTAAAAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCAGCTGGACGCTCTTTTTGTACAGTTGTTTCT-GAAAAATAATT
* * * * *
68687888 TTGAGAAGATGGTTTTGAAAAAATAGGTTG-AAAATGCTTCAAGGAGGATGCACTATTAGTAGAA
65 TTGAGAAGATGGTTCTGAAAAAATAGGTTGAAAAATGCTTCAAGCAGGATGCACTGTTAGCAAAA
* * *
68687952 GTAATGAAAAAATCTCCCAACT
130 GTACTAAAAAAAACTCCCAACT
68687974 GGATGTTTTT
Statistics
Matches: 351, Mismatches: 45, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
248 44 0.13
249 177 0.50
250 26 0.07
251 65 0.19
252 39 0.11
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.29
Consensus pattern (251 bp):
AAAAGTACTGAAAAAAGCTCCCAGCTGGACGCTCTTTTTGTACAGTTGTTTCTGAAAAATAATTT
TGAGAAGATGGTTCTGAAAAAATAGGTTGAAAAATGCTTCAAGCAGGATGCACTGTTAGCAAAAG
TACTAAAAAAAACTCCCAACTAGACGCTCTTTTTGTACAGTTGTTTCTGAAAAAATAATTTTGAG
AAGATGGTTCTGAAAAAATAGGTTAAAAAACGCTCCAAGCAAGATCCACTATCAGC
Found at i:68687788 original size:126 final size:126
Alignment explanation
Indices: 68687324--68687976 Score: 868
Period size: 126 Copynumber: 5.2 Consensus size: 126
68687314 TATAGTTAGT
* *
68687324 AAAAGTACTGAAAAAAGCTCCTAGCTGGACGCTCTTTTTGTACAGTTGTTTCTG-AAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCAACTGGACGCTCTTTTTGTACAGTTGTTTCTGAAAAAATAATT
* * *
68687388 TTGAGAAGATGGTTCT-AAAAAAAAGGTTGAAAAACACTTCAAGCAGGATGCACTGTCAAC
66 TTGAGAAGATGGTTCTGAAAAAATAGGTTGAAAAACGCTTCAAGCAGGATGCACTGTCAGC
* * * *
68687448 AAAAGTACTAAAAAAAACTCTCAGCTGGACGCTCTTTTTGTACAGTTGTTTCTGAAAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCAACTGGACGCTCTTTTTGTACAGTTGTTTCTGAAAAAATAATT
* * * * * *
68687513 TTGAGAAGATTGTTCTGAAAAAATAGGTTTAAAAACGCTCCAAGCAAGATCCACTATCAGC
66 TTGAGAAGATGGTTCTGAAAAAATAGGTTGAAAAACGCTTCAAGCAGGATGCACTGTCAGC
* ** * * *
68687574 AAAAGTACT-CAAAAAGCTCCCAGTTGGACG-TTTTTTTGTACAATTGCTTCTG-AAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCAACTGGACGCTCTTTTTGTACAGTTGTTTCTGAAAAAATAATT
* * * *
68687636 TTGAGAAGATGGTTGTGAAAAAATAGGTTGAAAAATGCTTCAAGCAAGATGCACTGTTAGC
66 TTGAGAAGATGGTTCTGAAAAAATAGGTTGAAAAACGCTTCAAGCAGGATGCACTGTCAGC
* *
68687697 AAAAGTACTAAAAAAAGCTCCCAACTAGACGCTCTTTTTGTACAGTTGTTTCTGAAAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCAACTGGACGCTCTTTTTGTACAGTTGTTTCTGAAAAAATAATT
* * * *
68687762 TTGAGATGATGGTTTTGGAAAAATAGGTTAAAAAACGCTTCAAGCAGGATGCACTGTCAGC
66 TTGAGAAGATGGTTCTGAAAAAATAGGTTGAAAAACGCTTCAAGCAGGATGCACTGTCAGC
* * * *
68687823 AAAAGTATTGAAAAAAGCTCCCAACTAGACGCTCTTTTTGTATAGTTGTTTCTAAAAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCAACTGGACGCTCTTTTTGTACAGTTGTTTCTGAAAAAATAATT
* * * * * *
68687888 TTGAGAAGATGGTTTTGAAAAAATAGGTTG-AAAATGCTTCAAGGAGGATGCACTATTAGT
66 TTGAGAAGATGGTTCTGAAAAAATAGGTTGAAAAACGCTTCAAGCAGGATGCACTGTCAGC
* * *
68687948 AGAAGTAATGAAAAAATCTCCCAACTGGA
1 AAAAGTACTGAAAAAAGCTCCCAACTGGA
68687977 TGTTTTTTTC
Statistics
Matches: 466, Mismatches: 58, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
123 72 0.15
124 86 0.18
125 111 0.24
126 197 0.42
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (126 bp):
AAAAGTACTGAAAAAAGCTCCCAACTGGACGCTCTTTTTGTACAGTTGTTTCTGAAAAAATAATT
TTGAGAAGATGGTTCTGAAAAAATAGGTTGAAAAACGCTTCAAGCAGGATGCACTGTCAGC
Found at i:68694461 original size:37 final size:37
Alignment explanation
Indices: 68694411--68694487 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
68694401 TTCTGTGGGA
68694411 TTACACACTGAGTTTACGTAAACTCACCCTTTTTTGT
1 TTACACACTGAGTTTACGTAAACTCACCCTTTTTTGT
68694448 TTACACACTGAGTTTACGTAAACTCACCCTTTTTTGT
1 TTACACACTGAGTTTACGTAAACTCACCCTTTTTTGT
68694485 TTA
1 TTA
68694488 TTGTGCATGG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.25, C:0.23, G:0.10, T:0.42
Consensus pattern (37 bp):
TTACACACTGAGTTTACGTAAACTCACCCTTTTTTGT
Found at i:68697004 original size:15 final size:15
Alignment explanation
Indices: 68696986--68697028 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
68696976 TTTAAATAAC
68696986 GAATTATACAATATT
1 GAATTATACAATATT
68697001 GAATTATACTAAT-TT
1 GAATTATAC-AATATT
68697016 G-ATCTATACAATA
1 GAAT-TATACAATA
68697029 AATTGCAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 5 0.20
15 17 0.68
16 3 0.12
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (15 bp):
GAATTATACAATATT
Found at i:68720966 original size:21 final size:20
Alignment explanation
Indices: 68720940--68720983 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 20
68720930 TAAAGCCTTA
68720940 TTTTGGATTAT-GGTTTGAGGT
1 TTTTGGATT-TGGGTTTG-GGT
68720961 TTTTGGATTTGGGTTTGGGT
1 TTTTGGATTTGGGTTTGGGT
68720981 TTT
1 TTT
68720984 ATGCATGCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.09, C:0.00, G:0.34, T:0.57
Consensus pattern (20 bp):
TTTTGGATTTGGGTTTGGGT
Found at i:68743014 original size:42 final size:42
Alignment explanation
Indices: 68742895--68743014 Score: 141
Period size: 43 Copynumber: 2.8 Consensus size: 42
68742885 TACCATACCA
* * **
68742895 ATGCCATATCCTAGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * * *
68742937 ATGCCAATAGCCCAGCTATGGTCTTATACAAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* *
68742980 ATTCCATATCCCAGATATGGTCTTACACGTAATCT
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCT
68743015 TAACTCACCC
Statistics
Matches: 63, Mismatches: 14, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
42 30 0.48
43 33 0.52
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:68752878 original size:41 final size:41
Alignment explanation
Indices: 68752833--68752914 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
68752823 CCAGAGGAGG
68752833 TAACCACAGCAGCAGCAGAGACAAAGAAGGAAATAACTAAA
1 TAACCACAGCAGCAGCAGAGACAAAGAAGGAAATAACTAAA
68752874 TAACCACAGCAGCAGCAGAGACAAAGAAGGAAATAACTAAA
1 TAACCACAGCAGCAGCAGAGACAAAGAAGGAAATAACTAAA
68752915 GATTCTGCCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.54, C:0.20, G:0.20, T:0.07
Consensus pattern (41 bp):
TAACCACAGCAGCAGCAGAGACAAAGAAGGAAATAACTAAA
Found at i:68754340 original size:6 final size:6
Alignment explanation
Indices: 68754329--68754370 Score: 75
Period size: 6 Copynumber: 6.8 Consensus size: 6
68754319 AAATGGTCAT
68754329 CTTTTG CTTTTG CTTTTG CTTTTG CTTTTG CTTTTTG CTTTT
1 CTTTTG CTTTTG CTTTTG CTTTTG CTTTTG C-TTTTG CTTTT
68754371 TTTTAGGTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
6 29 0.83
7 6 0.17
ACGTcount: A:0.00, C:0.17, G:0.14, T:0.69
Consensus pattern (6 bp):
CTTTTG
Found at i:68756049 original size:16 final size:15
Alignment explanation
Indices: 68756023--68756055 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
68756013 GAAGGTTTGT
68756023 TTTAAAATTTTTACG
1 TTTAAAATTTTTACG
68756038 TTTAAAATTTTTACG
1 TTTAAAATTTTTACG
68756053 TTT
1 TTT
68756056 CTTTTTTACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (15 bp):
TTTAAAATTTTTACG
Found at i:68763527 original size:25 final size:25
Alignment explanation
Indices: 68763499--68763566 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
68763489 CTTGTACTTG
*
68763499 TATGCTCACACGAGCTGTAAAACGA
1 TATGCTCTCACGAGCTGTAAAACGA
** *
68763524 TATGCTCTCACGAGCTGTAAGTCGG
1 TATGCTCTCACGAGCTGTAAAACGA
68763549 TATGCTCTCACGAGCTGT
1 TATGCTCTCACGAGCTGT
68763567 GGGTCAAAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (25 bp):
TATGCTCTCACGAGCTGTAAAACGA
Found at i:68764861 original size:15 final size:15
Alignment explanation
Indices: 68764841--68764894 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
68764831 GACTTATGGC
68764841 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
68764856 ATATTTATAATTATAAT
1 ATATTTATTA-T-TAAT
*
68764873 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
68764890 ATATT
1 ATATT
68764895 AATATTGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 14 0.44
16 1 0.03
17 7 0.22
18 1 0.03
19 9 0.28
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:68764880 original size:19 final size:19
Alignment explanation
Indices: 68764856--68764892 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
68764846 TATTATTAAT
*
68764856 ATATTTATAATTATAATAA
1 ATATTTATAATTAAAATAA
*
68764875 ATATTTATTATTAAAATA
1 ATATTTATAATTAAAATA
68764893 TTAATATTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:68765012 original size:21 final size:20
Alignment explanation
Indices: 68764987--68765030 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
68764977 ATATTAAATA
68764987 ATTTATTAAAATAATAATTAT
1 ATTTATTAAAATAATAATT-T
* *
68765008 ATTTATTATATTAATAATTT
1 ATTTATTAAAATAATAATTT
68765028 ATT
1 ATT
68765031 ATAAGACTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
ATTTATTAAAATAATAATTT
Found at i:68765559 original size:36 final size:36
Alignment explanation
Indices: 68765512--68765584 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
68765502 TGAACAAAGG
68765512 TTAAAAGATGATAACTTTAACTTTTGTTTTATTTAA
1 TTAAAAGATGATAACTTTAACTTTTGTTTTATTTAA
68765548 TTAAAAGATGATAACTTTAACTTTTGTTTTATTTAA
1 TTAAAAGATGATAACTTTAACTTTTGTTTTATTTAA
68765584 T
1 T
68765585 ATTAACATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.36, C:0.05, G:0.08, T:0.51
Consensus pattern (36 bp):
TTAAAAGATGATAACTTTAACTTTTGTTTTATTTAA
Found at i:68779296 original size:40 final size:40
Alignment explanation
Indices: 68779212--68779435 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
68779202 TTGAATGATG
* * * *
68779212 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
68779252 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68779292 TCCGGGCTAAG-CCCGAAGGCA-TGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68779330 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68779370 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
68779411 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
68779436 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 24 0.15
39 19 0.12
40 110 0.67
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:68779347 original size:78 final size:79
Alignment explanation
Indices: 68779212--68779435 Score: 283
Period size: 78 Copynumber: 2.8 Consensus size: 79
68779202 TTGAATGATG
* * * * * *
68779212 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCATT
*
68779276 TGTGCGAGATACTAAT
64 TGTGCGAGATACTAAA
* *
68779292 TCCGGGCTAAG-CCCGAAGGCATGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
*
68779356 TGCGAGTTACTAAA
66 TGCGAGATACTAAA
* *
68779370 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
68779434 TG
64 TG
68779436 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
77 1 0.01
78 51 0.40
79 24 0.19
80 48 0.38
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:68779400 original size:118 final size:119
Alignment explanation
Indices: 68779212--68779432 Score: 297
Period size: 118 Copynumber: 1.9 Consensus size: 119
68779202 TTGAATGATG
*
68779212 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
68779277 GTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATGGTGCGAGTTACTAAA
66 GTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCATGGTGCGAGTTACTAAA
* * * * **
68779330 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* *
68779393 TTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCAT
64 TTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCAT
68779433 TTGAACGAGG
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
117 1 0.01
118 69 0.78
119 19 0.21
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATGGTGCGAGTTACTAAA
Found at i:68787354 original size:40 final size:40
Alignment explanation
Indices: 68787270--68787494 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
68787260 TTGAATGATG
* * * *
68787270 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
68787310 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68787350 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68787389 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68787429 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
68787470 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
68787495 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:68787516 original size:119 final size:119
Alignment explanation
Indices: 68787270--68787527 Score: 283
Period size: 119 Copynumber: 2.2 Consensus size: 119
68787260 TTGAATGATG
* *
68787270 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
68787335 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
68787389 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
68787452 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
68787509 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
68787528 TACGTGATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:68793123 original size:46 final size:44
Alignment explanation
Indices: 68792992--68793160 Score: 153
Period size: 46 Copynumber: 3.7 Consensus size: 44
68792982 ATTGTGAGCT
* * * *
68792992 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAAATGA-GTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCG--A-GACGTGCC
* *
68793040 AGTGTAAGGCATGTTTGGGACATGCATCGGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGT--GCC
* **
68793086 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGTGTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGTGCC
68793130 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
68793161 ACACAGATAT
Statistics
Matches: 104, Mismatches: 11, Indels: 14
0.81 0.09 0.11
Matches are distributed among these distances:
43 2 0.02
44 13 0.12
45 16 0.15
46 52 0.50
47 13 0.12
48 8 0.08
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTGCC
Found at i:68793341 original size:45 final size:45
Alignment explanation
Indices: 68793277--68793369 Score: 186
Period size: 45 Copynumber: 2.1 Consensus size: 45
68793267 AACGGTGAAA
68793277 GTATGATTTCAAGTTAACAAGGAAACTATAACCGTGTTATGAGTG
1 GTATGATTTCAAGTTAACAAGGAAACTATAACCGTGTTATGAGTG
68793322 GTATGATTTCAAGTTAACAAGGAAACTATAACCGTGTTATGAGTG
1 GTATGATTTCAAGTTAACAAGGAAACTATAACCGTGTTATGAGTG
68793367 GTA
1 GTA
68793370 CAGGTACCTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.23, T:0.31
Consensus pattern (45 bp):
GTATGATTTCAAGTTAACAAGGAAACTATAACCGTGTTATGAGTG
Found at i:68800435 original size:46 final size:42
Alignment explanation
Indices: 68800348--68800465 Score: 121
Period size: 46 Copynumber: 2.6 Consensus size: 42
68800338 TTGAAAAAAG
* * *
68800348 TGCTAGTGTAAGGCATGTCTAGGACATACATCAGCCTCGAGACA
1 TGCTAGTGTAAGACATGTCTGGGACATACATCAGCCACGAG--A
*
68800392 TAAGCTAGTGTAAGACATGTCTGGGACATACAT-TGCCCACGAGA
1 T--GCTAGTGTAAGACATGTCTGGGACATACATCAG-CCACGAGA
68800436 TGTCTCAGTGTAAGACCATGTCTGGGACAT
1 TG-CT-AGTGTAAGA-CATGTCTGGGACAT
68800466 TGCATCGGCA
Statistics
Matches: 64, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
42 1 0.02
43 2 0.03
44 12 0.19
45 15 0.23
46 34 0.53
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (42 bp):
TGCTAGTGTAAGACATGTCTGGGACATACATCAGCCACGAGA
Found at i:68810548 original size:47 final size:47
Alignment explanation
Indices: 68810479--68810651 Score: 210
Period size: 47 Copynumber: 3.7 Consensus size: 47
68810469 GGGTAAGGTT
*
68810479 TCGATGCCATGTCCCAGACATGGTTTTACACTGGCTTATATCTCAAG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATATCTCAAG
* *
68810526 TCGATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCATCTCGTAG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTAT-ATCTC-AAG
* * * **
68810574 CCGATG-CATGTCTCAGACAT-GTCTTACACTAGCTCT-CGTCTCAATG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TATATCTCAA-G
68810620 TCGATGCCATGTCCCAGACATGGTCTTACACT
1 TCGATGCCATGTCCCAGACATGGTCTTACACT
68810652 AGCTCTCATA
Statistics
Matches: 107, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
45 1 0.01
46 24 0.22
47 64 0.60
48 18 0.17
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (47 bp):
TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATATCTCAAG
Found at i:68810647 original size:94 final size:93
Alignment explanation
Indices: 68810486--68810700 Score: 283
Period size: 94 Copynumber: 2.3 Consensus size: 93
68810476 GTTTCGATGC
* * **
68810486 CATGTCCCAGACATGGTTTTACACTGGCT-TATATCTCAAGTCGATGCCATGTCCCAGACATGGT
1 CATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCTCAAGTCGATGCCATGTCCCAGACATGGT
* *
68810550 CTTACACT-GACTATCAT-CTCGTAGCCGATG
64 CTTACACTAG-CTATCATAAT-GTAGCCGATA
*
68810580 CATGTCTCAGACATGTCTTACACTAGCTCTCGTCTCAATGTCGATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAA-GTCGATGCCATGTCCCAGACATGGTC
* *
68810645 TTACACTAGCTCTCATAATGTGGCCGATA
65 TTACACTAGCTATCATAATGTAGCCGATA
68810674 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
68810701 CAACCATAAC
Statistics
Matches: 107, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
93 18 0.17
94 87 0.81
95 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAGTCGATGCCATGTCCCAGACATGGTCT
TACACTAGCTATCATAATGTAGCCGATA
Found at i:68810678 original size:47 final size:45
Alignment explanation
Indices: 68810533--68810700 Score: 164
Period size: 47 Copynumber: 3.6 Consensus size: 45
68810523 AAGTCGATGC
* * *
68810533 CATGTCCCAGACATGGTCTTACACT-GACTATCAT-CTCGTAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAG-CTCTCATAAT-GT-GCCGATA
* * *
68810580 CATGTCTCAGACATGTCTTACACTAGCTCTCGTCTCAATGT--CGATGC
1 CATGTCCCAGACATGTCTTACACTAGCTCTC--AT-AATGTGCCGAT-A
68810627 CATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATA
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGT-GCCGATA
68810674 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
68810701 CAACCATAAC
Statistics
Matches: 103, Mismatches: 8, Indels: 21
0.78 0.06 0.16
Matches are distributed among these distances:
45 5 0.05
46 32 0.31
47 41 0.40
48 22 0.21
49 2 0.02
50 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATAATGTGCCGATA
Found at i:68813318 original size:14 final size:14
Alignment explanation
Indices: 68813299--68813340 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
68813289 TATCGTTATT
68813299 TTTAATTATATATA
1 TTTAATTATATATA
68813313 TTTAA-TATATTATA
1 TTTAATTATA-TATA
**
68813327 TAAAATTATATATA
1 TTTAATTATATATA
68813341 AATATCATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 4 0.17
14 16 0.67
15 4 0.17
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTAATTATATATA
Found at i:68813397 original size:20 final size:20
Alignment explanation
Indices: 68813374--68813412 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
68813364 AAAATTTTAA
68813374 ATATAAAATATTAATTAATT
1 ATATAAAATATTAATTAATT
*
68813394 ATATAAAATATTATTTAAT
1 ATATAAAATATTAATTAAT
68813413 AAATTTTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
ATATAAAATATTAATTAATT
Found at i:68818784 original size:25 final size:25
Alignment explanation
Indices: 68818756--68818806 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
68818746 TAATTATATA
68818756 GCAAGAACTTAGAAATCTATGATAG
1 GCAAGAACTTAGAAATCTATGATAG
68818781 GCAAGAACTTAGAAATCTATGATAG
1 GCAAGAACTTAGAAATCTATGATAG
68818806 G
1 G
68818807 AACAATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.43, C:0.12, G:0.22, T:0.24
Consensus pattern (25 bp):
GCAAGAACTTAGAAATCTATGATAG
Found at i:68824359 original size:12 final size:12
Alignment explanation
Indices: 68824344--68824368 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
68824334 AAACTGAGCC
68824344 ATAAATATTTAT
1 ATAAATATTTAT
68824356 ATAAATATTTAT
1 ATAAATATTTAT
68824368 A
1 A
68824369 GAGTGTCAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATAAATATTTAT
Found at i:68829942 original size:63 final size:63
Alignment explanation
Indices: 68829864--68829990 Score: 254
Period size: 63 Copynumber: 2.0 Consensus size: 63
68829854 TAGATAAATG
68829864 ACTACTGTGAGCTTCACTCAGAATTATTTGAATTAATTCTGTATTTCTCGGAACACAAATTCA
1 ACTACTGTGAGCTTCACTCAGAATTATTTGAATTAATTCTGTATTTCTCGGAACACAAATTCA
68829927 ACTACTGTGAGCTTCACTCAGAATTATTTGAATTAATTCTGTATTTCTCGGAACACAAATTCA
1 ACTACTGTGAGCTTCACTCAGAATTATTTGAATTAATTCTGTATTTCTCGGAACACAAATTCA
68829990 A
1 A
68829991 TCTCGAAATC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (63 bp):
ACTACTGTGAGCTTCACTCAGAATTATTTGAATTAATTCTGTATTTCTCGGAACACAAATTCA
Found at i:68836811 original size:64 final size:64
Alignment explanation
Indices: 68836707--68836836 Score: 224
Period size: 64 Copynumber: 2.0 Consensus size: 64
68836697 TTCATATCAT
68836707 AAACTAATCATAATCAATCATATTGTCCATTATGTAAGCCCTAGAGGTCCAAAACACGCATTAG
1 AAACTAATCATAATCAATCATATTGTCCATTATGTAAGCCCTAGAGGTCCAAAACACGCATTAG
* * * *
68836771 AAACTAATCATAATCAATCATATTGTCTATTATGTGAGCCCTCGCGGTCCAAAACACGCATTAG
1 AAACTAATCATAATCAATCATATTGTCCATTATGTAAGCCCTAGAGGTCCAAAACACGCATTAG
68836835 AA
1 AA
68836837 TTAAGTCGGG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.38, C:0.22, G:0.13, T:0.27
Consensus pattern (64 bp):
AAACTAATCATAATCAATCATATTGTCCATTATGTAAGCCCTAGAGGTCCAAAACACGCATTAG
Found at i:68849930 original size:125 final size:130
Alignment explanation
Indices: 68849689--68850355 Score: 522
Period size: 140 Copynumber: 4.9 Consensus size: 130
68849679 ATCAAATTTA
* * * *
68849689 AGTGTTGGACAAAACCGACTCTTATTTAAGTGTTGTCTTAGGCATGCATATCCCGACCCTTATGC
1 AGTGTTGGAC-AAAGCGACTCTTATTTAAGTGTTGCCTTAGGCATGCATATCCCAACCC-TATAC
* *
68849754 AAAGAGTTGGCCAAAGCGTATGTCGGCAAGTCTATTCCAACACTTAGGAAAGTGTCGG-C-A-T-
64 AAAGAGTTGGCCAAAGCATATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGGCCAAGTG
68849815 A-
129 AT
* *
68849816 A-TGTTGGACAAAGGCGATTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTATACA
1 AGTGTTGGACAAA-GCGACTCTTATTTAAGTGTTGCCTTAGGCATGCATATCCCAACCCTATACA
** *
68849880 AAGAGTTATCCAAAGCATATGTCGGCAAGTCTATCCCAACACTTAAGAAAGTGTCGGCCCAAAAG
65 AAGAGTTGGCCAAAGCATATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGG-CC--AA-
68849945 CGTTGGCAT
126 -G-T-G-AT
* * * *
68849954 AGTGTTCGACAAAGCTGACTCTTATTTAAGTGTTGCCCTAGGCATGCATATCCCAACGCTTATAA
1 AGTGTTGGACAAAGC-GACTCTTATTTAAGTGTTGCCTTAGGCATGCATATCCCAAC-CCTATAC
* * * * *
68850019 AAAGGGATGGCCAAAGCATATGTCAGCAAGTCTATCCCAACACTTAGGAAATTGCCGGCCCAAAA
64 AAAGAGTTGGCCAAAGCATATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGG-CC--AA
68850084 GTGTCGGTAT
126 --GT--G-AT
* ** *
68850094 AGTGTTGGAGAAATTTGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATAC
1 AGTGTTGGACAAA-GCGACTCTTATTTAAGTGTTGCCTTAGGCATGCATATCCCAACCC-TATAC
* * * * ** * * **
68850159 AAAGGGTTTGCCAAA-CTGTGTGTCAACAAGTCTATCCCTACACTTGGGAAAGTGTCTACCCAAA
64 AAAGAGTTGGCCAAAGC-ATATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTGTC-GGCC--A
*
68850223 AGTGTCGGCAC
125 A--GT--G-AT
* * * ** * * * *
68850234 AGTGTTGGGCAAAGCCAACTCTTATGTAAGCT-TTGCCTTAGATATGAACATCTCAAACCTTATA
1 AGTGTTGGACAAAG-CGACTCTTATTTAAG-TGTTGCCTTAGGCATGCATATC-CCAACCCTATA
* * * * *
68850298 CAAAGTGTAGTCCAAAGCATATGTTGGCAAGCCTATCCCAACACTTAGGAAAGTGTCG
63 CAAAGAGTTGGCCAAAGCATATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTGTCG
68850356 CCCCAAAAGT
Statistics
Matches: 440, Mismatches: 74, Indels: 40
0.79 0.13 0.07
Matches are distributed among these distances:
125 60 0.14
126 48 0.11
127 2 0.00
130 1 0.00
134 1 0.00
137 1 0.00
138 3 0.01
139 51 0.12
140 267 0.61
141 6 0.01
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (130 bp):
AGTGTTGGACAAAGCGACTCTTATTTAAGTGTTGCCTTAGGCATGCATATCCCAACCCTATACAA
AGAGTTGGCCAAAGCATATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGGCCAAGTGAT
Found at i:68850096 original size:140 final size:139
Alignment explanation
Indices: 68849802--68850369 Score: 654
Period size: 140 Copynumber: 4.1 Consensus size: 139
68849792 AACACTTAGG
* *
68849802 AAAGTGTCGGCATAATGTTGGACAAAGGC-GATTCTTATTTAAGCGTTGCCTTAGGCATGCATAT
1 AAAGTGTCGGCATAGTGTTGGACAAA-GCTGACTCTTATTTAAGCGTTGCCTTAGGCATGCATAT
* * ** * *
68849866 CCCAACCCTATACAAAGAGTTATCCAAAGCATATGTCGGCAAGTCTATCCCAACACTTAAGAAAG
65 CCCAACCTTATACAAAGGGTTGGCCAAAGCATATGTCAGCAAGTCTATCCCAACACTTAGGAAAG
68849931 TGTCGGCCCA
130 TGTCGGCCCA
* * * * *
68849941 AAAGCGTTGGCATAGTGTTCGACAAAGCTGACTCTTATTTAAGTGTTGCCCTAGGCATGCATATC
1 AAAGTGTCGGCATAGTGTTGGACAAAGCTGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATC
* * *
68850006 CCAACGCTTATAAAAAGGGATGGCCAAAGCATATGTCAGCAAGTCTATCCCAACACTTAGGAAAT
66 CCAAC-CTTATACAAAGGGTTGGCCAAAGCATATGTCAGCAAGTCTATCCCAACACTTAGGAAAG
*
68850071 TGCCGGCCCA
130 TGTCGGCCCA
* * **
68850081 AAAGTGTCGGTATAGTGTTGGAGAAATTTGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATC
1 AAAGTGTCGGCATAGTGTTGGACAAAGCTGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATC
* * * * * *
68850146 CCAACCCTTATACAAAGGGTTTGCCAAA-CTGTGTGTCAACAAGTCTATCCCTACACTTGGGAAA
66 CCAA-CCTTATACAAAGGGTTGGCCAAAGC-ATATGTCAGCAAGTCTATCCCAACACTTAGGAAA
**
68850210 GTGTCTACCCA
129 GTGTCGGCCCA
* * ** * * ** * *
68850221 AAAGTGTCGGCACAGTGTTGGGCAAAGCCAACTCTTATGTAAGCTTTGCCTTAGATATGAACATC
1 AAAGTGTCGGCATAGTGTTGGACAAAGCTGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATC
* * * * ** *
68850286 TCAAACCTTATACAAAGTGTAGTCCAAAGCATATGTTGGCAAGCCTATCCCAACACTTAGGAAAG
66 -CCAACCTTATACAAAGGGTTGGCCAAAGCATATGTCAGCAAGTCTATCCCAACACTTAGGAAAG
*
68850351 TGTCGCCCCA
130 TGTCGGCCCA
68850361 AAAGTGTCG
1 AAAGTGTCG
68850370 TCTCAGTACT
Statistics
Matches: 356, Mismatches: 67, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
138 2 0.01
139 61 0.17
140 288 0.81
141 5 0.01
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (139 bp):
AAAGTGTCGGCATAGTGTTGGACAAAGCTGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATC
CCAACCTTATACAAAGGGTTGGCCAAAGCATATGTCAGCAAGTCTATCCCAACACTTAGGAAAGT
GTCGGCCCA
Found at i:68851145 original size:20 final size:20
Alignment explanation
Indices: 68851108--68851145 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
68851098 ATGAATATGC
*
68851108 TAAAAATTAGAAATTTGTGG
1 TAAAAATTAGAAAGTTGTGG
68851128 TAAAAATT-GAAAAGTTGT
1 TAAAAATTAG-AAAGTTGT
68851146 TGATAGATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 1 0.06
20 15 0.94
ACGTcount: A:0.47, C:0.00, G:0.18, T:0.34
Consensus pattern (20 bp):
TAAAAATTAGAAAGTTGTGG
Found at i:68852011 original size:24 final size:24
Alignment explanation
Indices: 68851957--68852012 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
68851947 TGGCTATTCA
*
68851957 GAGCTTCCCGATGTTGTTCTTTGT
1 GAGCTTCCCGATGTTGCTCTTTGT
*
68851981 GAACTTCCCGAT-TATAGCTCTTT-T
1 GAGCTTCCCGATGT-T-GCTCTTTGT
68852005 GAGCTTCC
1 GAGCTTCC
68852013 TATTATATAG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 1 0.04
24 20 0.74
25 6 0.22
ACGTcount: A:0.14, C:0.25, G:0.20, T:0.41
Consensus pattern (24 bp):
GAGCTTCCCGATGTTGCTCTTTGT
Found at i:68853920 original size:53 final size:54
Alignment explanation
Indices: 68853852--68854058 Score: 211
Period size: 53 Copynumber: 3.8 Consensus size: 54
68853842 TTCCTTTTTA
*
68853852 AACTTACCATTGCCATGCCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
68853905 AACTCACCATTGCCATGCCTTGGCATGGCCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * ** * *
68853959 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATAATTTCCTTGCCTTGTAG
1 -AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
68854014 AACTTACCAATT-CCATGCCTTGGCATGATCTTACTTGTTATCCTT
1 AACTTACC-ATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
68854059 AAACCCTAAT
Statistics
Matches: 120, Mismatches: 31, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
53 46 0.38
54 32 0.27
55 42 0.35
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (54 bp):
AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:68860199 original size:30 final size:30
Alignment explanation
Indices: 68860163--68860221 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
68860153 AGTCTTACAG
68860163 AAATTTAAATATCTCATAATATAGACTTAT
1 AAATTTAAATATCTCATAATATAGACTTAT
68860193 AAATTTAAATATCTCATAATATAGACTTA
1 AAATTTAAATATCTCATAATATAGACTTA
68860222 CTTTGCTTGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.47, C:0.10, G:0.03, T:0.39
Consensus pattern (30 bp):
AAATTTAAATATCTCATAATATAGACTTAT
Found at i:68860917 original size:53 final size:54
Alignment explanation
Indices: 68860859--68861054 Score: 207
Period size: 55 Copynumber: 3.6 Consensus size: 54
68860849 ACTTACCATG
* * *
68860859 GCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCATT
1 GCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAAT
* * * ** * *
68860912 GCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAGTTTATCAAT
1 GCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG-AACTCACCAAT
* * * * *
68860967 GCCATGTCTTGACATGGTCTTCCATGATTTCCTTGCCTTGTAGAACTTC-CCAAT
1 GCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAC-TCACCAAT
* *
68861021 GCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 GCCATGCCTTGACATGGTCTTACATGGTATCCTT
68861055 AAACCCTAAT
Statistics
Matches: 112, Mismatches: 28, Indels: 5
0.77 0.19 0.03
Matches are distributed among these distances:
53 36 0.32
54 34 0.30
55 42 0.38
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.37
Consensus pattern (54 bp):
GCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAAT
Found at i:68861003 original size:55 final size:54
Alignment explanation
Indices: 68860848--68861054 Score: 220
Period size: 53 Copynumber: 3.8 Consensus size: 54
68860838 TTCCTTTTTA
* *
68860848 AACTTACC-ATGGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAAT-GCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
68860901 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * *
68860955 TAGTTTATCAATGCCATGTCTTGACATGGTCTTCCATGATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
68861010 AACTTCCCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
68861055 AAACCCTAAT
Statistics
Matches: 121, Mismatches: 30, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 43 0.36
54 37 0.31
55 41 0.34
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:68874584 original size:37 final size:37
Alignment explanation
Indices: 68874527--68874625 Score: 94
Period size: 35 Copynumber: 2.7 Consensus size: 37
68874517 GTATGTACAT
* * * * *
68874527 ATGTGATGATGTATTCAACTTATATATATTTGGCCAC
1 ATGTGATGTTATATTAAACTTATATATATTCGACCAC
* * *
68874564 ATGTGATGTTATATTAAACTT-GA-ATATTCGACTAT
1 ATGTGATGTTATATTAAACTTATATATATTCGACCAC
* *
68874599 ATGTGATGTTTTATTGAACTTATATAT
1 ATGTGATGTTATATTAAACTTATATAT
68874626 TCGGTCATAT
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
35 27 0.55
36 2 0.04
37 20 0.41
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.44
Consensus pattern (37 bp):
ATGTGATGTTATATTAAACTTATATATATTCGACCAC
Found at i:68874603 original size:35 final size:34
Alignment explanation
Indices: 68874564--68874687 Score: 115
Period size: 35 Copynumber: 3.6 Consensus size: 34
68874554 ATTTGGCCAC
* *
68874564 ATGTGATGTTATATTAAACTTGAATATTCGACTAT
1 ATGTGATGATATATTGAACTTGAATATTCG-CTAT
* * *
68874599 ATGTGATGTTTTATTGAACTT-ATATATTCGGTCAT
1 ATGTGATGATATATTGAACTTGA-ATATTCGCT-AT
* * * *
68874634 ATATGATGATATATTGTACTTGTATATTCGGCCAT
1 ATGTGATGATATATTGAACTTGAATATTC-GCTAT
*
68874669 ATGTGATGATATAATGAAC
1 ATGTGATGATATATTGAAC
68874688 CATGTGTATT
Statistics
Matches: 72, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
34 2 0.03
35 69 0.96
36 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.43
Consensus pattern (34 bp):
ATGTGATGATATATTGAACTTGAATATTCGCTAT
Found at i:68874687 original size:70 final size:72
Alignment explanation
Indices: 68874524--68874687 Score: 179
Period size: 70 Copynumber: 2.3 Consensus size: 72
68874514 TAGGTATGTA
* * * * *
68874524 CATATGTGATGATGTATTCAACTTATATATATTTGGCCACATGTGATGTTATATTAAACTTGAAT
1 CATATGTGATGATATATTGAACTTATATATATTCGGCCACATATGATGATATATTAAACTTGAAT
68874589 ATTCGAC
66 ATTCGAC
* * * * * ** *
68874596 TATATGTGATGTTTTATTGAAC-T-TATATATTCGGTCATATATGATGATATATTGTACTTGTAT
1 CATATGTGATGATATATTGAACTTATATATATTCGGCCACATATGATGATATATTAAACTTGAAT
*
68874659 ATTCGGC
66 ATTCGAC
*
68874666 CATATGTGATGATATAATGAAC
1 CATATGTGATGATATATTGAAC
68874688 CATGTGTATT
Statistics
Matches: 75, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
70 56 0.75
71 1 0.01
72 18 0.24
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.42
Consensus pattern (72 bp):
CATATGTGATGATATATTGAACTTATATATATTCGGCCACATATGATGATATATTAAACTTGAAT
ATTCGAC
Found at i:68874705 original size:36 final size:35
Alignment explanation
Indices: 68874621--68874705 Score: 107
Period size: 35 Copynumber: 2.4 Consensus size: 35
68874611 ATTGAACTTA
* * * *
68874621 TATATTCGGTCATATATGATGATATATTGTACTTG
1 TATATTCGGCCATATATGATGATATAATGAACATG
*
68874656 TATATTCGGCCATATGTGATGATATAATGAACCATG
1 TATATTCGGCCATATATGATGATATAATGAA-CATG
*
68874692 TGTATTCGGCCATA
1 TATATTCGGCCATA
68874706 CAAGTAAGTA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
35 27 0.63
36 16 0.37
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.39
Consensus pattern (35 bp):
TATATTCGGCCATATATGATGATATAATGAACATG
Found at i:68876993 original size:36 final size:36
Alignment explanation
Indices: 68876952--68877024 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
68876942 AATTTCGATG
*
68876952 TAAAAGCCACCACGAGACTCCCAGAATCTAAAATAA
1 TAAAAGCCACCACGAGACTCCCAAAATCTAAAATAA
68876988 TAAAAGCCACCACGAGACTCCCAAAATCTAAAATAA
1 TAAAAGCCACCACGAGACTCCCAAAATCTAAAATAA
68877024 T
1 T
68877025 CATATAACAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.48, C:0.27, G:0.10, T:0.15
Consensus pattern (36 bp):
TAAAAGCCACCACGAGACTCCCAAAATCTAAAATAA
Found at i:68881832 original size:21 final size:22
Alignment explanation
Indices: 68881803--68881849 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
68881793 CAGAAGGAGT
*
68881803 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
68881825 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
68881846 GAGT
1 GAGT
68881850 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:68884215 original size:22 final size:22
Alignment explanation
Indices: 68884176--68884222 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
68884166 TTTATTGTGC
68884176 TTAGGGTTTTAAGGTTAATTAGA
1 TTAGGGTTTTAAGGTTAATTA-A
68884199 TTAGGG-TTT-AGGATTAATTAA
1 TTAGGGTTTTAAGG-TTAATTAA
68884220 TTA
1 TTA
68884223 AATTAACTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 7 0.30
22 10 0.43
23 6 0.26
ACGTcount: A:0.32, C:0.00, G:0.23, T:0.45
Consensus pattern (22 bp):
TTAGGGTTTTAAGGTTAATTAA
Found at i:68884240 original size:21 final size:20
Alignment explanation
Indices: 68884211--68884249 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
68884201 AGGGTTTAGG
**
68884211 ATTAATTAATTAAATTAACT
1 ATTAATTAAAAAAATTAACT
68884231 ATTAATTTAAAAAAATTAA
1 ATTAA-TTAAAAAAATTAA
68884250 TTAAATTAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (20 bp):
ATTAATTAAAAAAATTAACT
Found at i:68884436 original size:15 final size:15
Alignment explanation
Indices: 68884416--68884491 Score: 62
Period size: 15 Copynumber: 4.5 Consensus size: 15
68884406 ATCAATTAAA
68884416 TTAGGGTTTAAGGTT
1 TTAGGGTTTAAGGTT
68884431 TTAGGGTTTAAGATTAGTAT
1 TTAGGGTTTAAG----GT-T
68884451 ATTAGGGTTTAAGGTT
1 -TTAGGGTTTAAGGTT
* *
68884467 TTATTGTGTTTATGGTT
1 TTA--GGGTTTAAGGTT
68884484 TTAGGGTT
1 TTAGGGTT
68884492 AATTAAATTA
Statistics
Matches: 50, Mismatches: 3, Indels: 16
0.72 0.04 0.23
Matches are distributed among these distances:
15 19 0.38
16 1 0.02
17 15 0.30
19 2 0.04
20 1 0.02
21 12 0.24
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (15 bp):
TTAGGGTTTAAGGTT
Found at i:68884477 original size:140 final size:139
Alignment explanation
Indices: 68884317--68884577 Score: 436
Period size: 140 Copynumber: 1.9 Consensus size: 139
68884307 GGCTTTAAGA
* *
68884317 GTTTATGGTTTTATTGTGTTTATGGTTTTAGGGTTAACTAAATT-AGAGTTTAGGGTTAATTAAT
1 GTTTAAGGTTTTATTGTGTTTATGGTTTTAGGGTTAACTAAATTAAG-GTTTAAGGTTAATTAAT
68884381 TAAATTAACTATTAATTTTAAAAAAATCAATTAAATTAGGGTTTA-AGGTTTTAGGGTTTAAGAT
65 TAAATTAACTATTAA-TTT-AAAAAATCAATTAAATTAGGGTTTAGAGGTTTTAGGGTTTAAGAT
68884445 TAGTATATTAGG
128 TAGTATATTAGG
*
68884457 GTTTAAGGTTTTATTGTGTTTATGGTTTTAGGGTTAATTAAATTAAGGTTTAAGGTTAATTAATT
1 GTTTAAGGTTTTATTGTGTTTATGGTTTTAGGGTTAACTAAATTAAGGTTTAAGGTTAATTAATT
* *
68884522 AAATTAACTATTAATTTAAAAAATTAATTAAATTAGGGTTTAGAGTTTTTAGGGTT
66 AAATTAACTATTAATTTAAAAAATCAATTAAATTAGGGTTTAGAGGTTTTAGGGTT
68884578 AATTAATTAA
Statistics
Matches: 114, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
138 24 0.21
139 15 0.13
140 73 0.64
141 2 0.02
ACGTcount: A:0.34, C:0.02, G:0.19, T:0.46
Consensus pattern (139 bp):
GTTTAAGGTTTTATTGTGTTTATGGTTTTAGGGTTAACTAAATTAAGGTTTAAGGTTAATTAATT
AAATTAACTATTAATTTAAAAAATCAATTAAATTAGGGTTTAGAGGTTTTAGGGTTTAAGATTAG
TATATTAGG
Found at i:68884513 original size:22 final size:21
Alignment explanation
Indices: 68884483--68884523 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
68884473 TGTTTATGGT
*
68884483 TTTAGGGTTAATTAAATTAAGG
1 TTTAAGGTTAATT-AATTAAGG
68884505 TTTAAGGTTAATTAATTAA
1 TTTAAGGTTAATTAATTAA
68884524 ATTAACTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.39, C:0.00, G:0.17, T:0.44
Consensus pattern (21 bp):
TTTAAGGTTAATTAATTAAGG
Found at i:68884889 original size:126 final size:126
Alignment explanation
Indices: 68884591--68885159 Score: 843
Period size: 126 Copynumber: 4.5 Consensus size: 126
68884581 TAATTAAATT
* * * * ****
68884591 AGGATGCACTATCAACAAAAGTACTGAAAAAAGCTTTTGCGTGGACGCTCTTTTGCTACAGTAGT
1 AGGATGCACTGTCAGCAAAATTACTAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGT
*
68884656 ATCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCCAAAACGCTTCAAGT
66 ATCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCCAAAACGCTTCAAGC
*
68884717 AGGATGCACTATCAGCAAAATTACTAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGT
1 AGGATGCACTGTCAGCAAAATTACTAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGT
* *
68884782 ATTTG-AAAAATAATTTTAAGAAGACGTTTCTGAACAAATAGTGTCCAAAACGCTTCAAGC
66 ATCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCCAAAACGCTTCAAGC
** * *
68884842 AGGATGCACTGTCAATAAAATTACTAAAAAAAAACTCTCACGTGGACGCTCTTTTGCTACAGTAG
1 AGGATGCACTGTCAGCAAAATTACT-AAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAG
* *
68884907 TATCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCCAAAACACTTCAAGC
65 TATCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCCAAAACGCTTCAAGC
* * *
68884969 AGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCTCACGTGGGCGCTCTTTTGCTACAGTAGT
1 AGGATGCACTGTCAGCAAAATTACTAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGT
* * * * * **
68885034 ATCTAAAAAAATAATTTTGAGAAGACGTTTCTAAAAAAATAGTGTCCAAAATGCTTTAAAT
66 ATCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCCAAAACGCTTCAAGC
* * *
68885095 AGGATGCACTGTCAGCAAATTTATTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGT
1 AGGATGCACTGTCAGCAAAATTACTAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGT
68885160 TCCTATTTGG
Statistics
Matches: 404, Mismatches: 37, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
125 75 0.19
126 254 0.63
127 75 0.19
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (126 bp):
AGGATGCACTGTCAGCAAAATTACTAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGT
ATCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCCAAAACGCTTCAAGC
Found at i:68888762 original size:18 final size:18
Alignment explanation
Indices: 68888731--68888765 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
68888721 AAAGGAAACA
**
68888731 TATAAGGGTTAGGATACT
1 TATAAGGGCCAGGATACT
68888749 TATAAGGGCCAGGATAC
1 TATAAGGGCCAGGATAC
68888766 GCACGTGGCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (18 bp):
TATAAGGGCCAGGATACT
Found at i:68888859 original size:30 final size:30
Alignment explanation
Indices: 68888825--68888886 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
68888815 GTGTTGGGTT
68888825 CGGTGACTGTGT-GGTCGCTGTTGATAGGCC
1 CGGTGACTGTGTAGG-CGCTGTTGATAGGCC
* * *
68888855 CGGTGATTGTGTAGGCGTTGTTGATGGGCC
1 CGGTGACTGTGTAGGCGCTGTTGATAGGCC
68888885 CG
1 CG
68888887 CATTGTCATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 26 0.93
31 2 0.07
ACGTcount: A:0.10, C:0.18, G:0.42, T:0.31
Consensus pattern (30 bp):
CGGTGACTGTGTAGGCGCTGTTGATAGGCC
Found at i:68889393 original size:7 final size:7
Alignment explanation
Indices: 68889383--68889408 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
68889373 TTATATACAT
68889383 AATACTA
1 AATACTA
68889390 AATACTA
1 AATACTA
68889397 AATACTA
1 AATACTA
68889404 AATAC
1 AATAC
68889409 GAAACGATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:68890599 original size:9 final size:10
Alignment explanation
Indices: 68890551--68890612 Score: 61
Period size: 11 Copynumber: 5.8 Consensus size: 10
68890541 TAAAGAGAGT
*
68890551 TTTGAGAAAA
1 TTTGAGAGAA
* *
68890561 TATGAAAGAAA
1 TTTGAGAG-AA
68890572 TTTGAGAGAA
1 TTTGAGAGAA
68890582 TTTGGAGAGAA
1 TTT-GAGAGAA
68890593 TTTAGAGAGAA
1 TTT-GAGAGAA
68890604 TTATGAGAG
1 TT-TGAGAG
68890613 GACTTTTGTG
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
10 10 0.23
11 32 0.74
12 1 0.02
ACGTcount: A:0.45, C:0.00, G:0.27, T:0.27
Consensus pattern (10 bp):
TTTGAGAGAA
Found at i:68892122 original size:22 final size:20
Alignment explanation
Indices: 68892095--68892143 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 20
68892085 AAACATAATT
68892095 TAATATTTATCATAAATATAAA
1 TAATATTTATCA-AAAT-TAAA
68892117 T-A-A--TATCAAAATTAAA
1 TAATATTTATCAAAATTAAA
68892133 TAATATTTATC
1 TAATATTTATC
68892144 TTAATATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 10
0.70 0.00 0.30
Matches are distributed among these distances:
16 5 0.22
17 5 0.22
18 6 0.26
20 5 0.22
21 1 0.04
22 1 0.04
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (20 bp):
TAATATTTATCAAAATTAAA
Done.