Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 210 of 333
Found at i:68892134 original size:16 final size:18
Alignment explanation
Indices: 68892102--68892138 Score: 60
Period size: 16 Copynumber: 2.2 Consensus size: 18
68892092 ATTTAATATT
68892102 TATCATAAATATAAATAA
1 TATCATAAATATAAATAA
68892120 TATCA-AAAT-TAAATAA
1 TATCATAAATATAAATAA
68892136 TAT
1 TAT
68892139 TTATCTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 10 0.53
17 4 0.21
18 5 0.26
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.35
Consensus pattern (18 bp):
TATCATAAATATAAATAA
Found at i:68892607 original size:26 final size:27
Alignment explanation
Indices: 68892578--68892629 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
68892568 TACAATATAG
* * *
68892578 AATATTTTATATTATTTTTAA-AATAC
1 AATATTTCATACTATTTATAATAATAC
68892604 AATATTTCATACTATTTATAATAATA
1 AATATTTCATACTATTTATAATAATA
68892630 AACATTTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (27 bp):
AATATTTCATACTATTTATAATAATAC
Found at i:68892636 original size:26 final size:26
Alignment explanation
Indices: 68892581--68892636 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
68892571 AATATAGAAT
* * * *
68892581 ATTTTATATTATTTTTAAAATACAAT
1 ATTTCATACTATTTATAAAATACAAC
68892607 ATTTCATACTATTTATAATAATA-AAC
1 ATTTCATACTATTTATAA-AATACAAC
68892633 ATTT
1 ATTT
68892637 ATTTAAAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (26 bp):
ATTTCATACTATTTATAAAATACAAC
Found at i:68898634 original size:11 final size:13
Alignment explanation
Indices: 68898605--68898635 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
68898595 CTAAAGTTGT
68898605 ATATATGGTTATA
1 ATATATGGTTATA
68898618 ATATATGGTTATA
1 ATATATGGTTATA
68898631 ATATA
1 ATATA
68898636 GCTTTAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (13 bp):
ATATATGGTTATA
Found at i:68900209 original size:105 final size:105
Alignment explanation
Indices: 68900027--68900236 Score: 377
Period size: 105 Copynumber: 2.0 Consensus size: 105
68900017 CCAAAATTTA
*
68900027 AAAATAAATATATGAGCTAATTGCACCTTATGACCCTCATTCTAAATTGATCCCTAAATTTCAAG
1 AAAATAAATATATGAGCTAATTGCACCTTATGACCCTCATTCTAAATTGATCCCGAAATTTCAAG
*
68900092 TCATTCTAATTACATCTCTAACTATCAAGGTCATATCAAT
66 TCATTCTAATTACATCTCCAACTATCAAGGTCATATCAAT
*
68900132 AAAATAAATATATG-GACTAATTGCACCTTATGACCCTCATTCTAAATTGGTCCCGAAATTTCAA
1 AAAATAAATATATGAG-CTAATTGCACCTTATGACCCTCATTCTAAATTGATCCCGAAATTTCAA
68900196 GTCATTCTAATTACATCTCCAACTATCAAGGTCATATCAAT
65 GTCATTCTAATTACATCTCCAACTATCAAGGTCATATCAAT
68900237 TAGGACATTT
Statistics
Matches: 101, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
104 1 0.01
105 100 0.99
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (105 bp):
AAAATAAATATATGAGCTAATTGCACCTTATGACCCTCATTCTAAATTGATCCCGAAATTTCAAG
TCATTCTAATTACATCTCCAACTATCAAGGTCATATCAAT
Found at i:68904367 original size:21 final size:20
Alignment explanation
Indices: 68904335--68904373 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
68904325 TATTAAAAGG
*
68904335 TTAATATAATAAATTAGTTA
1 TTAATATAATAAAATAGTTA
*
68904355 TTAATTATGATAAAATAGT
1 TTAA-TATAATAAAATAGT
68904374 AAAAAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.44
Consensus pattern (20 bp):
TTAATATAATAAAATAGTTA
Found at i:68905289 original size:26 final size:24
Alignment explanation
Indices: 68905251--68905328 Score: 77
Period size: 24 Copynumber: 3.2 Consensus size: 24
68905241 GACTCACCAT
* *
68905251 AGCTCGGATGAGCTTACCGATATATC
1 AGCTCGTAAGAGCTTACCG-T-TATC
* *
68905277 AGCTCGTAAGAGCTTACTGTTTTC
1 AGCTCGTAAGAGCTTACCGTTATC
* *
68905301 AGCTTGTTAGAGCTTACCGTT-TC
1 AGCTCGTAAGAGCTTACCGTTATC
68905324 AGCTC
1 AGCTC
68905329 AATAGAGCTT
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
23 6 0.14
24 21 0.48
25 1 0.02
26 16 0.36
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (24 bp):
AGCTCGTAAGAGCTTACCGTTATC
Found at i:68905312 original size:24 final size:24
Alignment explanation
Indices: 68905275--68905343 Score: 86
Period size: 23 Copynumber: 2.9 Consensus size: 24
68905265 TACCGATATA
*
68905275 TCAGCTCGTAAGAGCTTACTGTTT
1 TCAGCTCGTTAGAGCTTACTGTTT
* *
68905299 TCAGCTTGTTAGAGCTTACCG-TT
1 TCAGCTCGTTAGAGCTTACTGTTT
**
68905322 TCAGCTCAATAGAGCTTACTGT
1 TCAGCTCGTTAGAGCTTACTGT
68905344 CCATCAGCTC
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
23 19 0.51
24 18 0.49
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (24 bp):
TCAGCTCGTTAGAGCTTACTGTTT
Found at i:68908577 original size:14 final size:15
Alignment explanation
Indices: 68908553--68908582 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
68908543 TACAATACAT
68908553 AAAAAGAAAAAAGAA
1 AAAAAGAAAAAAGAA
68908568 AAAAAG-AAAAAGAA
1 AAAAAGAAAAAAGAA
68908582 A
1 A
68908583 CTAACTGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAAAGAA
Found at i:68911921 original size:197 final size:197
Alignment explanation
Indices: 68911579--68911974 Score: 783
Period size: 197 Copynumber: 2.0 Consensus size: 197
68911569 CTTCATGACC
68911579 TAGATTGTCGGATATCACAGTGATATCAACTGCATTCAAATAATAAACCACCACAAGATCCAGAT
1 TAGATTGTCGGATATCACAGTGATATCAACTGCATTCAAATAATAAACCACCACAAGATCCAGAT
68911644 TTACAAGCAAATATCTTCGAAATACTCCAAGAATACAAACAAGTATCATAGCTCATATGACATTT
66 TTACAAGCAAATATCTTCGAAATACTCCAAGAATACAAACAAGTATCATAGCTCATATGACATTT
68911709 GAACACCAAACTATGCCTAGTTATTGGTTGATGATTATTGTTAAGCATCCAGCCAAACACCAATT
131 GAACACCAAACTATGCCTAGTTATTGGTTGATGATTATTGTTAAGCATCCAGCCAAACACCAATT
68911774 GG
196 GG
68911776 TAGATTGTCGGATATCACAGTGATATCAACTGCATTCAAATAATAAACCACCACAAGATCCAGAT
1 TAGATTGTCGGATATCACAGTGATATCAACTGCATTCAAATAATAAACCACCACAAGATCCAGAT
68911841 TTACAAGCAAATATCTTCGAAATACTCCAAGAATACAAACAAGTATCATAGCTCATATGACATTT
66 TTACAAGCAAATATCTTCGAAATACTCCAAGAATACAAACAAGTATCATAGCTCATATGACATTT
*
68911906 GAACACCACACTATGCCTAGTTATTGGTTGATGATTATTGTTAAGCATCCAGCCAAACACCAATT
131 GAACACCAAACTATGCCTAGTTATTGGTTGATGATTATTGTTAAGCATCCAGCCAAACACCAATT
68911971 GG
196 GG
68911973 TA
1 TA
68911975 ATCTAGAGGC
Statistics
Matches: 198, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
197 198 1.00
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.27
Consensus pattern (197 bp):
TAGATTGTCGGATATCACAGTGATATCAACTGCATTCAAATAATAAACCACCACAAGATCCAGAT
TTACAAGCAAATATCTTCGAAATACTCCAAGAATACAAACAAGTATCATAGCTCATATGACATTT
GAACACCAAACTATGCCTAGTTATTGGTTGATGATTATTGTTAAGCATCCAGCCAAACACCAATT
GG
Found at i:68915403 original size:40 final size:40
Alignment explanation
Indices: 68915319--68915403 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
68915309 AAGTTAACTT
**** *
68915319 CATGTTTTTCTATAGAATTAGAGTGCACATAAAATGTTCT
1 CATGTTTTTCTATAGAATTAGAGTGCACATAAAACCCCCA
68915359 CATGTTCTTT-TATAGAATTAGAGTGCACATAAAACCCCCA
1 CATGTT-TTTCTATAGAATTAGAGTGCACATAAAACCCCCA
68915399 CATGT
1 CATGT
68915404 ACACACTCAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 36 0.92
41 3 0.08
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (40 bp):
CATGTTTTTCTATAGAATTAGAGTGCACATAAAACCCCCA
Found at i:68930875 original size:16 final size:16
Alignment explanation
Indices: 68930837--68930883 Score: 85
Period size: 17 Copynumber: 2.9 Consensus size: 16
68930827 AAGGCTGCGT
68930837 TTGGATTAGAGGTGTA
1 TTGGATTAGAGGTGTA
68930853 TTGGGATTAGAGGTGTA
1 TT-GGATTAGAGGTGTA
68930870 TTGGATTAGAGGTG
1 TTGGATTAGAGGTG
68930884 GAATAGCTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
16 14 0.47
17 16 0.53
ACGTcount: A:0.23, C:0.00, G:0.40, T:0.36
Consensus pattern (16 bp):
TTGGATTAGAGGTGTA
Found at i:68931084 original size:21 final size:19
Alignment explanation
Indices: 68931059--68931097 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
68931049 ATTTAAATTT
*
68931059 TAATAAGATTATTATAATCAG
1 TAATAA-ATAATT-TAATCAG
68931080 TAATAAATAATTTAATCA
1 TAATAAATAATTTAATCA
68931098 TATTTTAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 5 0.29
21 6 0.35
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.38
Consensus pattern (19 bp):
TAATAAATAATTTAATCAG
Found at i:68931142 original size:18 final size:19
Alignment explanation
Indices: 68931121--68931157 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
68931111 TTATTATTAA
68931121 ATAT-ATTT-TAATTAAAAT
1 ATATAATTTATAA-TAAAAT
68931139 ATATAATTTATAATAAAAT
1 ATATAATTTATAATAAAAT
68931158 TCTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.24
19 10 0.59
20 3 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATAATTTATAATAAAAT
Found at i:68931253 original size:122 final size:122
Alignment explanation
Indices: 68931101--68931391 Score: 462
Period size: 120 Copynumber: 2.4 Consensus size: 122
68931091 TTAATCATAT
68931101 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTATAATAAAATTCTTAATA
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTATAATAAAATTCTTAATA
* * *
68931166 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
66 ATAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* *
68931223 TTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGA-TT-TAATAAAATTCTTAAT
1 TTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTATAATAAAATTCTTAAT
* *
68931285 ATTAAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATAA
65 AATAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
** *
68931343 TTTAACATAATTATTATTAAATATAAGTTAATAAAAATATATAATTTAT
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAT
68931392 CATCATACTA
Statistics
Matches: 153, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
119 2 0.01
120 105 0.69
121 4 0.03
122 40 0.26
123 2 0.01
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (122 bp):
TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTATAATAAAATTCTTAATA
ATAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:68931265 original size:59 final size:58
Alignment explanation
Indices: 68931199--68931384 Score: 157
Period size: 59 Copynumber: 3.1 Consensus size: 58
68931189 CTCAAATCAT
* *
68931199 AATATATGATACTATAAAATATAATTTGAAATAATTAATATTAAATATATTTTAATTAA
1 AATATATGATACTATAAAATATAATTT-AAATAATTATTATTAAATATATTTTAATAAA
* * * * *
68931258 AATATATGAT-TTAATAAAATTCTTAATATTAAAT-ATTCTTATATGAAT-T-TTCTAA-AATCA
1 AATATATGATACT-ATAAAA-T-ATAAT-TTAAATAATTATTAT-TAAATATATTTTAATAA--A
* **
68931318 TAATATATAATACTATAAAATATAATTTAACATAATTATTATTAAATATAAGTTAATAAA
1 -AATATATGATACTATAAAATATAATTTAA-ATAATTATTATTAAATATATTTTAATAAA
68931378 AATATAT
1 AATATAT
68931385 AATTTATCAT
Statistics
Matches: 98, Mismatches: 15, Indels: 28
0.70 0.11 0.20
Matches are distributed among these distances:
58 6 0.06
59 38 0.39
60 19 0.19
61 30 0.31
62 5 0.05
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.42
Consensus pattern (58 bp):
AATATATGATACTATAAAATATAATTTAAATAATTATTATTAAATATATTTTAATAAA
Found at i:68937565 original size:56 final size:56
Alignment explanation
Indices: 68937487--68937598 Score: 197
Period size: 56 Copynumber: 2.0 Consensus size: 56
68937477 TACAAAATTA
*
68937487 AATAGATGGCTTACAATCAACAATTCTCTGGTGTAGTCCCTTCAACAAAATCACTT
1 AATAGATGGCTCACAATCAACAATTCTCTGGTGTAGTCCCTTCAACAAAATCACTT
* *
68937543 AATAGATGGCTCATAATTAACAATTCTCTGGTGTAGTCCCTTCAACAAAATCACTT
1 AATAGATGGCTCACAATCAACAATTCTCTGGTGTAGTCCCTTCAACAAAATCACTT
68937599 CCTTTAGTTA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.31
Consensus pattern (56 bp):
AATAGATGGCTCACAATCAACAATTCTCTGGTGTAGTCCCTTCAACAAAATCACTT
Found at i:68939405 original size:25 final size:25
Alignment explanation
Indices: 68939377--68939426 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
68939367 CACAATGAAA
68939377 AGGAAAAATCAAAGTTTTAAATTTG
1 AGGAAAAATCAAAGTTTTAAATTTG
68939402 AGGAAAAATCAAAGTTTTAAATTTG
1 AGGAAAAATCAAAGTTTTAAATTTG
68939427 TTTCCAAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.48, C:0.04, G:0.16, T:0.32
Consensus pattern (25 bp):
AGGAAAAATCAAAGTTTTAAATTTG
Found at i:68948907 original size:27 final size:27
Alignment explanation
Indices: 68948869--68948930 Score: 124
Period size: 27 Copynumber: 2.3 Consensus size: 27
68948859 TTACAGATTC
68948869 AGATACAGTTTAGGCCTTAGCCCATTT
1 AGATACAGTTTAGGCCTTAGCCCATTT
68948896 AGATACAGTTTAGGCCTTAGCCCATTT
1 AGATACAGTTTAGGCCTTAGCCCATTT
68948923 AGATACAG
1 AGATACAG
68948931 CTTCTGACAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (27 bp):
AGATACAGTTTAGGCCTTAGCCCATTT
Found at i:68954397 original size:68 final size:68
Alignment explanation
Indices: 68954260--68954416 Score: 192
Period size: 68 Copynumber: 2.3 Consensus size: 68
68954250 TTAACTGTGA
* * * *
68954260 AATC-AACAGATTCGGACAGCTACATTTACTAAATAAAACAACATATATGGTAGTGCATCGAACA
1 AATCTAACACATTCGGACAGCTACATTTACCAAATAAAACAACATAAATGATAGTGCATCGAACA
68954324 ATG
66 ATG
* * * * *
68954327 AATTTAACACATTCGGACAGCTACATTTACCAAATAAAACAGCATAAATGAT-GATGCTTTGAAT
1 AATCTAACACATTCGGACAGCTACATTTACCAAATAAAACAACATAAATGATAG-TGCATCGAAC
*
68954391 AGTG
65 AATG
*
68954395 AATCTAACACATTCGAACAGCT
1 AATCTAACACATTCGGACAGCT
68954417 TAATTTTAAG
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
67 4 0.05
68 72 0.95
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.25
Consensus pattern (68 bp):
AATCTAACACATTCGGACAGCTACATTTACCAAATAAAACAACATAAATGATAGTGCATCGAACA
ATG
Found at i:68961327 original size:47 final size:47
Alignment explanation
Indices: 68961273--68961561 Score: 398
Period size: 47 Copynumber: 6.1 Consensus size: 47
68961263 TTAGGATTTT
* * * *
68961273 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACGTGCATATATGTGATAAGGCCGAATGGCCA
*
68961320 ATGTGATGAATGTGAACCTGCATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACGTGC--ATATAT--GTGATAAGGCCGAATGGCCA
* * *
68961371 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACGTGCATATATGTGATAAGGCCGAATGGCCA
* * *
68961418 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACGTGCATATATGTGATAAGGCCGAATGGCCA
*
68961465 ATGTGATGAATGTGAACGTGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACGTGCATATATGTGATAAGGCCGAATGGCCA
* * * *
68961512 ATGTGATGAATGTGAACGTGTATATATGTGGTAAGGCTGAATGGCTA
1 ATGTGATGAATGTGAACGTGCATATATGTGATAAGGCCGAATGGCCA
68961559 ATG
1 ATG
68961562 CGAAACGTGT
Statistics
Matches: 221, Mismatches: 17, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
47 173 0.78
49 10 0.05
51 38 0.17
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACGTGCATATATGTGATAAGGCCGAATGGCCA
Found at i:68961398 original size:23 final size:23
Alignment explanation
Indices: 68961371--68961445 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
68961361 CGAATGGCCA
68961371 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
68961394 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
68961418 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
68961441 ATGTG
1 ATGTG
68961446 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:68961424 original size:22 final size:22
Alignment explanation
Indices: 68961397--68961518 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
68961387 CATGCGTATG
68961397 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * **
68961419 TGTGATGAATG-TGAACAT-GCGTA
1 TGTGAT-AAGGCCG-A-ATGGCCAA
68961442 TGTGTGATAAGGCCGAATGGCCAA
1 T--GTGATAAGGCCGAATGGCCAA
* * * *
68961466 TGTGATGAATG-TGAACGTGCATATA
1 TGTGAT-AAGGCCGAATG-GC-CA-A
*
68961491 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
68961513 TGTGAT
1 TGTGAT
68961519 GAATGTGAAC
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 22 0.31
23 16 0.23
24 16 0.23
25 16 0.23
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:68961595 original size:94 final size:93
Alignment explanation
Indices: 68961305--68961610 Score: 286
Period size: 94 Copynumber: 3.2 Consensus size: 93
68961295 TATATGAGAT
* *
68961305 AAGGCCGAATGGCAAATGTGATGAATGTGAACCTGCATATATATGCGTGATAAGGCCGAATGGCC
1 AAGGCCGAATGGCCAATGTGATGAATGTGAACATG--TATATAT--GTGATAAGGCCGAATGGCC
*
68961370 AATGTGATGAATGTGA-ACATGCG-TATGT-GTGA
62 AATGTGA-GAATGTGAGAGATG-GATATGTGGT-A
** *
68961402 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAAT
1 -AAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAAT
* *
68961467 GTGATGAATGTGA-ACG-TGCATATATGAG-A
65 GTGA-GAATGTGAGA-GATGGATATGTG-GTA
* * * *
68961496 TAAGGCCGAATGGCCAATGTGATGAATGTGAACGTGTATATATGTGGTAAGGCTGAATGGCTAAT
1 -AAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAAT
* *
68961561 GCGA-AACGTGTATGAGATGGATATGTGGTA
65 GTGAGAATGTG-A-GAGATGGATATGTGGTA
* *
68961591 AAGG-CAAATGGCTAATGTGA
1 AAGGCCGAATGGCCAATGTGA
68961611 GATATGTATG
Statistics
Matches: 178, Mismatches: 21, Indels: 23
0.80 0.09 0.10
Matches are distributed among these distances:
92 5 0.03
93 15 0.08
94 110 0.62
95 10 0.06
96 5 0.03
98 33 0.19
ACGTcount: A:0.32, C:0.12, G:0.31, T:0.25
Consensus pattern (93 bp):
AAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATG
TGAGAATGTGAGAGATGGATATGTGGTA
Found at i:68961601 original size:46 final size:46
Alignment explanation
Indices: 68961535--68961625 Score: 121
Period size: 46 Copynumber: 2.0 Consensus size: 46
68961525 GAACGTGTAT
* *
68961535 ATATGTGGTAAGGCTGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAGGCTAAATGGCTAATGCGAAACATGTATGAGATGG
* * *
68961581 ATATGTGGTAAAGGC-AAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGT-AAGGCTAAATGGCTAATGCGAAACATGTATGAGATG
68961626 TGTATATATA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
46 34 0.87
47 5 0.13
ACGTcount: A:0.33, C:0.07, G:0.33, T:0.27
Consensus pattern (46 bp):
ATATGTGGTAAGGCTAAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:68974178 original size:23 final size:23
Alignment explanation
Indices: 68974142--68974212 Score: 70
Period size: 23 Copynumber: 3.1 Consensus size: 23
68974132 GGACTCACCA
*
68974142 CAACTCGTATGAGCTTACTGATT
1 CAACTCGTAAGAGCTTACTGATT
* *
68974165 CAACTTGTAAGAGCTTACTGTTT
1 CAACTCGTAAGAGCTTACTGATT
* * ** *
68974188 CAGCTCATTGGAGCTTACCGATT
1 CAACTCGTAAGAGCTTACTGATT
68974211 CA
1 CA
68974213 GCTTAAAAGA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (23 bp):
CAACTCGTAAGAGCTTACTGATT
Found at i:68974224 original size:23 final size:23
Alignment explanation
Indices: 68974152--68974250 Score: 83
Period size: 23 Copynumber: 4.3 Consensus size: 23
68974142 CAACTCGTAT
* ***
68974152 GAGCTTACTGATTCAACTTGTAA
1 GAGCTTACTGATTCAGCTCAAAA
* ***
68974175 GAGCTTACTGTTTCAGCTCATTG
1 GAGCTTACTGATTCAGCTCAAAA
* *
68974198 GAGCTTACCGATTCAGCTTAAAA
1 GAGCTTACTGATTCAGCTCAAAA
* *
68974221 GAGCTTATTG-TTCAGCTCAATA
1 GAGCTTACTGATTCAGCTCAAAA
68974243 GAGCTTAC
1 GAGCTTAC
68974251 CATTTTCAGC
Statistics
Matches: 59, Mismatches: 17, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
22 17 0.29
23 42 0.71
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.33
Consensus pattern (23 bp):
GAGCTTACTGATTCAGCTCAAAA
Found at i:68974250 original size:45 final size:46
Alignment explanation
Indices: 68974152--68974251 Score: 130
Period size: 46 Copynumber: 2.2 Consensus size: 46
68974142 CAACTCGTAT
* ** * *
68974152 GAGCTTACTGATTCAACTTGTAAGAGCTTACTGTTTCAGCTCATTG
1 GAGCTTACCGATTCAACTTAAAAGAGCTTACTGTTTCAGCTCAATA
* *
68974198 GAGCTTACCGATTCAGCTTAAAAGAGCTTATTG-TTCAGCTCAATA
1 GAGCTTACCGATTCAACTTAAAAGAGCTTACTGTTTCAGCTCAATA
68974243 GAGCTTACC
1 GAGCTTACC
68974252 ATTTTCAGCT
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
45 19 0.40
46 28 0.60
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (46 bp):
GAGCTTACCGATTCAACTTAAAAGAGCTTACTGTTTCAGCTCAATA
Found at i:68974259 original size:46 final size:46
Alignment explanation
Indices: 68974173--68974271 Score: 121
Period size: 46 Copynumber: 2.2 Consensus size: 46
68974163 TTCAACTTGT
* * *
68974173 AAGAGCTTACTGTTTCAGCTCATTGGAGCTTACCGATTCAGCTTAA
1 AAGAGCTTACTGTTTCAGCTCAATAGAGCTTACCGATTCAGCTCAA
*
68974219 AAGAGCTTATTG-TTCAGCTCAATAGAGCTTACC-ATTTTCAGCTCAA
1 AAGAGCTTACTGTTTCAGCTCAATAGAGCTTACCGA--TTCAGCTCAA
*
68974265 TAGAGCT
1 AAGAGCT
68974272 ATTATTTATC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
44 1 0.02
45 19 0.41
46 26 0.57
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.32
Consensus pattern (46 bp):
AAGAGCTTACTGTTTCAGCTCAATAGAGCTTACCGATTCAGCTCAA
Found at i:68974285 original size:24 final size:24
Alignment explanation
Indices: 68974185--68974271 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
68974175 GAGCTTACTG
* *
68974185 TTTCAGCTCATTGGAGCTTACCGA-
1 TTTCAGCTCAATAGAGCTTACC-AT
* *
68974209 -TTCAGCTTAAAAGAGCTT---AT
1 TTTCAGCTCAATAGAGCTTACCAT
68974229 TGTTCAGCTCAATAGAGCTTACCAT
1 T-TTCAGCTCAATAGAGCTTACCAT
68974254 TTTCAGCTCAATAGAGCT
1 TTTCAGCTCAATAGAGCT
68974272 ATTATTTATC
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
19 1 0.02
22 16 0.31
23 14 0.27
24 17 0.33
25 3 0.06
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (24 bp):
TTTCAGCTCAATAGAGCTTACCAT
Found at i:68986659 original size:29 final size:28
Alignment explanation
Indices: 68986617--68986701 Score: 93
Period size: 29 Copynumber: 3.0 Consensus size: 28
68986607 ACATGGCTTG
* *
68986617 GAAT-TGATTCGGGCCGGATGGGCCATAT
1 GAATGTGATTTGGGCC-AATGGGCCATAT
68986645 GAATGTGATTTGGGCCTAATGGGCCATAT
1 GAATGTGATTTGGGCC-AATGGGCCATAT
* *
68986674 GAATGAGA-TTGGGCCTAGTGGGCCATAT
1 GAATGTGATTTGGGCC-AATGGGCCATAT
68986702 ACATGTATGT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 23 0.45
29 28 0.55
ACGTcount: A:0.24, C:0.15, G:0.34, T:0.27
Consensus pattern (28 bp):
GAATGTGATTTGGGCCAATGGGCCATAT
Found at i:68986695 original size:28 final size:29
Alignment explanation
Indices: 68986634--68986701 Score: 111
Period size: 28 Copynumber: 2.4 Consensus size: 29
68986624 TTCGGGCCGG
*
68986634 ATGGGCCATATGAATGTGATTTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCTA
68986663 ATGGGCCATATGAATGAGA-TTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCTA
*
68986691 GTGGGCCATAT
1 ATGGGCCATAT
68986702 ACATGTATGT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.28
Consensus pattern (29 bp):
ATGGGCCATATGAATGAGATTTGGGCCTA
Found at i:68987395 original size:11 final size:11
Alignment explanation
Indices: 68987379--68987404 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
68987369 ATTTCATGTA
68987379 TGATATTATTG
1 TGATATTATTG
68987390 TGATATTATTG
1 TGATATTATTG
68987401 TGAT
1 TGAT
68987405 GTGGGCTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:68988301 original size:22 final size:21
Alignment explanation
Indices: 68988276--68988317 Score: 50
Period size: 22 Copynumber: 1.9 Consensus size: 21
68988266 GTATTATGTA
68988276 ATTA-AGTTTAGGTTGATTGATT
1 ATTAGAGTTT-GG-TGATTGATT
68988298 ATTATGAGTTTGGTGATTGA
1 ATTA-GAGTTTGGTGATTGA
68988318 CATTTTGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
22 11 0.61
23 2 0.11
24 5 0.28
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.48
Consensus pattern (21 bp):
ATTAGAGTTTGGTGATTGATT
Found at i:68989410 original size:597 final size:595
Alignment explanation
Indices: 68988279--68989449 Score: 2153
Period size: 597 Copynumber: 2.0 Consensus size: 595
68988269 TTATGTAATT
*
68988279 AAGTTTAGGTTGATTGATTATTATGAGTTTGGTGATTGACATTTTGAAAACAACAAAAAGAAACG
1 AAGTTTAGGTTGATGGATTATTATGAGTTTGGTGATTGACATTTTGAAAACAACAAAAAGAAACG
68988344 TAAGAACAACAAATGTAAGAAGGAAGGAATTTCATTAAAGCAAGAAAGTAGGTACAAATACAAGA
66 TAAGAACAACAAATGTAAGAAGGAAGGAATTTCATTAAAGCAAGAAAGTAGGTACAAATACAAGA
68988409 AAAGTTAAACATCTTCTTTTACTGGCTGGTCTATAACCTCCTCTGTATCTGCCTCTCCCTCATTG
131 AAAGTTAAACATCTTCTTTTACTGGCTGGTCTATAACCTCCTCTGTATCTGCCTCTCCCTCATTG
*
68988474 CTAACTTCCTCAATAGGAGCGGGATGACTGGCTCTGGTTTTAGGGAGAAGAAGAGATTGTCAGAT
196 CTAACTTCCTCAATAGGAGCGGGATGACTGGCTCTAGTTTTAGGGAGAAGAAGAGATTGTCAGAT
*
68988539 TCTTGTCATTTCTTCTGAAATTCTTCCTATTCAGCCCAGATTAACGTTGGTGAGCTTGCGCATAC
261 TCTTGTCATTTCTTCTGAAATTCTTCCTATTCAGCCCAGATTAACGTTGGTGAGCTTGCACATAC
*
68988604 AGCTAAGTTTACTTGCCCAATATCAAATGGCCCCACAACGACTTGGGTGTGTAGAATGTGATTTG
326 AGCCAAGTTTACTTGCCCAATATCAAATGGCCCCACAACGACTTGGGTGTGTAGAATGTGATTTG
* *
68988669 ATCTTAGCTTGGGAATATAACCTTGTATCTTTGTCGTGGTTTCTAACTTATAACAATTCAAGTCT
391 ATCTCAGCTTGGGAATATAACCTTGTATCTTTGTCGTGGTTTCTAACTTATAACAATCCAAGTCT
* *
68988734 TCGTAGTTTTCCTTCTGCATCCTCTTTAAATCAGCCAACCGTCATTCCTACAAGTATTTGATAGA
456 TCGTAGTTTTCCTTCTGCATCCTCTTTAAATCAGCCAACCATCATTCCTACAAGGATTTGATAGA
*
68988799 TTAATAAGTGGCTTCCCCTTATTTTTAGGTTTGTCTTACTCTTTTTAACAATGGCTTCCCCTTAT
521 TTAATAAGTGGCTTCCCCTTATTTTTAGGTTTATCTTACTCTTTTTAACAATGGCTTCCCCTTAT
68988864 TTCAAATTTC
586 TTCAAATTTC
* * *
68988874 AAGTTTAGGTTGATGGGTTATTATGAGTTTGGTGATTGGCATTTTGAGAACAACAAAAAGAAACG
1 AAGTTTAGGTTGATGGATTATTATGAGTTTGGTGATTGACATTTTGAAAACAACAAAAAGAAACG
*
68988939 TAAGAACAACAAATGTAAGAAGGAAGGAAATTTCATTAAAGCAGGAAAGTAGGTACAAATACAAG
66 TAAGAACAACAAATGTAAGAAGGAAGG-AATTTCATTAAAGCAAGAAAGTAGGTACAAATACAAG
68989004 AAAAGTTAAACATCTTCTTTTACTGGCTGGTCTATAACCTCCTCTGTATCTGCCTCTCCCTCATT
130 AAAAGTTAAACATCTTCTTTTACTGGCTGGTCTATAACCTCCTCTGTATCTGCCTCTCCCTCATT
* * *
68989069 GCTAACTTCCTCAATAGGAGCGGGGATGGCTGGCTCTAGTTTTAGGGAGAAGAAGAGGTTGTTAG
195 GCTAACTTCCTCAATAGGAGC-GGGATGACTGGCTCTAGTTTTAGGGAGAAGAAGAGATTGTCAG
68989134 ATTCTTGTCATTTCTTCTGAAATTCTTCCTATTCAGCCCAGATTAACGTTGGTGAGCTTGCACAT
259 ATTCTTGTCATTTCTTCTGAAATTCTTCCTATTCAGCCCAGATTAACGTTGGTGAGCTTGCACAT
68989199 ACAGCCAAGTTTACTTGCCCAATATCAAATGGCCCCACAACGACTTGGGTGTGTAGAATGTGATT
324 ACAGCCAAGTTTACTTGCCCAATATCAAATGGCCCCACAACGACTTGGGTGTGTAGAATGTGATT
68989264 TGATCTCAGCTTGGGAATATAACCTTGTATCTTTGTCGTGGTTTCTAACTTATAACAATCCAAGT
389 TGATCTCAGCTTGGGAATATAACCTTGTATCTTTGTCGTGGTTTCTAACTTATAACAATCCAAGT
* * *
68989329 CTTCGTATTTTTCCTTCTGCATCCTCTTTAAATTAGCCAACCATCATTCCTCCAAGGATTTGATA
454 CTTCGTAGTTTTCCTTCTGCATCCTCTTTAAATCAGCCAACCATCATTCCTACAAGGATTTGATA
68989394 GATTAATAAGTGGCTTCCCCTTATTTTTAGGTTTATCTTACTCTTTTTAACAATGG
519 GATTAATAAGTGGCTTCCCCTTATTTTTAGGTTTATCTTACTCTTTTTAACAATGG
68989450 TTAATTTCAA
Statistics
Matches: 555, Mismatches: 19, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
595 88 0.16
596 122 0.22
597 345 0.62
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.34
Consensus pattern (595 bp):
AAGTTTAGGTTGATGGATTATTATGAGTTTGGTGATTGACATTTTGAAAACAACAAAAAGAAACG
TAAGAACAACAAATGTAAGAAGGAAGGAATTTCATTAAAGCAAGAAAGTAGGTACAAATACAAGA
AAAGTTAAACATCTTCTTTTACTGGCTGGTCTATAACCTCCTCTGTATCTGCCTCTCCCTCATTG
CTAACTTCCTCAATAGGAGCGGGATGACTGGCTCTAGTTTTAGGGAGAAGAAGAGATTGTCAGAT
TCTTGTCATTTCTTCTGAAATTCTTCCTATTCAGCCCAGATTAACGTTGGTGAGCTTGCACATAC
AGCCAAGTTTACTTGCCCAATATCAAATGGCCCCACAACGACTTGGGTGTGTAGAATGTGATTTG
ATCTCAGCTTGGGAATATAACCTTGTATCTTTGTCGTGGTTTCTAACTTATAACAATCCAAGTCT
TCGTAGTTTTCCTTCTGCATCCTCTTTAAATCAGCCAACCATCATTCCTACAAGGATTTGATAGA
TTAATAAGTGGCTTCCCCTTATTTTTAGGTTTATCTTACTCTTTTTAACAATGGCTTCCCCTTAT
TTCAAATTTC
Found at i:68993928 original size:25 final size:25
Alignment explanation
Indices: 68993886--68993933 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
68993876 ACTTTTTGCC
**
68993886 AATTTTTTTTATTTTTCT-TTAATT
1 AATTTTTTTTATAATTCTATTAATT
68993910 AATTTATTTTTATAATTCTATTAA
1 AATTT-TTTTTATAATTCTATTAA
68993934 AATTATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 5 0.25
25 11 0.55
26 4 0.20
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (25 bp):
AATTTTTTTTATAATTCTATTAATT
Found at i:69004696 original size:21 final size:21
Alignment explanation
Indices: 69004672--69004713 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
69004662 AATTCAAAAC
*
69004672 ATATCTTTCATATTTCATCAA
1 ATATATTTCATATTTCATCAA
69004693 ATATATTTCATATTTCATCAA
1 ATATATTTCATATTTCATCAA
69004714 CTAACATCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.17, G:0.00, T:0.48
Consensus pattern (21 bp):
ATATATTTCATATTTCATCAA
Found at i:69011527 original size:37 final size:36
Alignment explanation
Indices: 69011468--69011538 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 36
69011458 AGCTCAGATG
*
69011468 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGATA
1 AAATCTCCACACGAAGTCATCGGGTCTT-CCCGGATA
*
69011505 AAATCTCCACACGTAGTCATCGGGTCTTCCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTTCCCGGA
69011539 ATATATTTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
36 6 0.19
37 26 0.81
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.24
Consensus pattern (36 bp):
AAATCTCCACACGAAGTCATCGGGTCTTCCCGGATA
Found at i:69011804 original size:100 final size:99
Alignment explanation
Indices: 69011685--69011976 Score: 482
Period size: 100 Copynumber: 3.0 Consensus size: 99
69011675 ACACATCGCC
**
69011685 TACATATTTCACACAAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCACA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT-TATATATATTTCACA
69011750 TTAGCCATTCGGCTTTACCACATATACATATCTCA
65 TTAGCCATTCGGCTTTACCACATATACATATCTCA
*
69011785 TACATGTTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATCTATATATATTTCACA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT-TATATATATTTCACA
*
69011850 TTAGCCATTCGGCTTTGCCACATATACATATCTCA
65 TTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
69011885 TACATATTTCACATTAGCCATTTGGCTTTACCACATATACATATCTC---ATACATATTTCACAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATTATATATATTTCACAT
*
69011947 TAGCCATTCGGATTTACCACATATACATAT
66 TAGCCATTCGGCTTTACCACATATACATAT
69011977 ATTTATCTTG
Statistics
Matches: 182, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
96 42 0.23
100 140 0.77
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (99 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATTATATATATTTCACAT
TAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:69011814 original size:48 final size:48
Alignment explanation
Indices: 69011685--69011976 Score: 440
Period size: 48 Copynumber: 5.9 Consensus size: 48
69011675 ACACATCGCC
**
69011685 TACATATTTCACACAAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
*
69011737 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
69011785 TACATGTTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATCTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA--TC-TC-A
* *
69011837 TATATATTTCACATTAGCCATTCGGCTTTGCCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
69011885 TACATATTTCACATTAGCCATTTGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
69011933 TACATATTTCACATTAGCCATTCGGATTTACCACATATACATAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
69011977 ATTTATCTTG
Statistics
Matches: 223, Mismatches: 13, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
48 130 0.58
49 2 0.01
50 4 0.02
51 2 0.01
52 85 0.38
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:69011963 original size:148 final size:149
Alignment explanation
Indices: 69011688--69011976 Score: 481
Period size: 148 Copynumber: 1.9 Consensus size: 149
69011678 CATCGCCTAC
*
69011688 ATATTTCACACAAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCACATTA
1 ATATTTCACACAAGCCATTCGGCTTTACCACATATACATATCTC--A-ATACATATTTCACATTA
* *
69011753 GCCATTCGGCTTTACCACATATACATATCTCATACATGTTTCACATTAGCCATTCGGCTTTACCA
63 GCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCA
69011818 CATATACATATCTCATCTATAT
128 CATATACATATCTCATCTATAT
** *
69011840 ATATTTCACATTAGCCATTCGGCTTTGCCACATATACATATCTC-ATACATATTTCACATTAGCC
1 ATATTTCACACAAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTAGCC
*
69011904 ATTTGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCACAT
66 ATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCACAT
69011969 ATACATAT
131 ATACATAT
69011977 ATTTATCTTG
Statistics
Matches: 130, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
148 89 0.68
152 41 0.32
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.36
Consensus pattern (149 bp):
ATATTTCACACAAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTAGCC
ATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCACAT
ATACATATCTCATCTATAT
Found at i:69015294 original size:25 final size:25
Alignment explanation
Indices: 69015260--69015314 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
69015250 CGGTTAAAGA
69015260 ATTCGCACACACAGTGCCTCA-ATTC
1 ATTCGCACACACAGTG-CTCATATTC
* *
69015285 ATTCGCACACATAGTGCTTATATTC
1 ATTCGCACACACAGTGCTCATATTC
69015310 ATTCG
1 ATTCG
69015315 TTATTACACA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 3 0.11
25 24 0.89
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (25 bp):
ATTCGCACACACAGTGCTCATATTC
Found at i:69015543 original size:40 final size:40
Alignment explanation
Indices: 69015476--69015797 Score: 500
Period size: 40 Copynumber: 8.1 Consensus size: 40
69015466 CTGATTACAC
* * * * *
69015476 ATCACCGGCATGAATGCCCTTCAGGACTTAGCCCGGATGT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* *
69015516 AGCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAC
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
69015556 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* *
69015596 AACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAC
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* *
69015636 ATCACTAGCACGAATGCTCTTCGGGACATAGCCCGGATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
69015676 AACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* *
69015716 ATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
69015756 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
69015796 AT
1 AT
69015798 ATAACTCTCG
Statistics
Matches: 258, Mismatches: 24, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 258 1.00
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
Found at i:69017113 original size:37 final size:36
Alignment explanation
Indices: 69017054--69017124 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 36
69017044 AGCTCAGATG
*
69017054 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGATA
1 AAATCTCCACACGAAGTCATCGGGTCTT-CCCGGATA
*
69017091 AAATCTCCACACGTAGTCATCGGGTCTTCCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTTCCCGGA
69017125 ATATATTTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
36 6 0.19
37 26 0.81
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.24
Consensus pattern (36 bp):
AAATCTCCACACGAAGTCATCGGGTCTTCCCGGATA
Found at i:69017401 original size:48 final size:48
Alignment explanation
Indices: 69017271--69017607 Score: 550
Period size: 48 Copynumber: 6.9 Consensus size: 48
69017261 ACACATCGCC
*
69017271 TACATA-TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
69017320 TATATATTTTACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
69017368 TACATTTTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
69017416 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATGTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* *
69017468 TATATATTTCACATTAGCCATTCGGCTTTGCCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
69017516 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
69017564 TACATATTTCACATTAGCCATTCGGATTTACCACATATACATAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
69017608 ATTTATCTTG
Statistics
Matches: 271, Mismatches: 12, Indels: 11
0.92 0.04 0.04
Matches are distributed among these distances:
48 182 0.67
49 5 0.02
50 38 0.14
52 46 0.17
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:69017515 original size:148 final size:146
Alignment explanation
Indices: 69017271--69017607 Score: 604
Period size: 148 Copynumber: 2.3 Consensus size: 146
69017261 ACACATCGCC
* *
69017271 TACATA-TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTTACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
*
69017335 AGCCATTCGGCTTTACCACATATACATATCTCATACATTTTTCACATTAGCCATTCGGCTTTACC
66 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
69017400 ACATATACATATCTCA
131 ACATATACATATCTCA
69017416 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATGTATATATATTTCACA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA--TATATATATTTCACA
*
69017481 TTAGCCATTCGGCTTTGCCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
64 TTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
69017546 CCACATATACATATCTCA
129 CCACATATACATATCTCA
*
69017564 TACATATTTCACATTAGCCATTCGGATTTACCACATATACATAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
69017608 ATTTATCTTG
Statistics
Matches: 184, Mismatches: 5, Indels: 3
0.96 0.03 0.02
Matches are distributed among these distances:
145 6 0.03
146 40 0.22
148 138 0.75
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (146 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
ACATATACATATCTCA
Found at i:69021404 original size:46 final size:46
Alignment explanation
Indices: 69021344--69021571 Score: 323
Period size: 46 Copynumber: 5.0 Consensus size: 46
69021334 TTTGACATGA
* * * * * *
69021344 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * *
69021390 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
69021436 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
69021482 TGCCATGGTATCTTTCAACTATGGTCTTACACATTTCATATTAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
69021528 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
69021572 AGAGCACACT
Statistics
Matches: 166, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 162 0.98
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:69023863 original size:14 final size:15
Alignment explanation
Indices: 69023841--69023888 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 15
69023831 GTATATTTTA
69023841 TTTACTATACATTTGTC
1 TTTA-TATA-ATTTGTC
69023858 TTTATATTAATTTGTC
1 TTTATA-TAATTTGTC
69023874 TTTATATTAATTTGT
1 TTTATA-TAATTTGT
69023889 TTATCATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
16 24 0.80
17 6 0.20
ACGTcount: A:0.25, C:0.08, G:0.06, T:0.60
Consensus pattern (15 bp):
TTTATATAATTTGTC
Found at i:69023870 original size:16 final size:16
Alignment explanation
Indices: 69023851--69023888 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
69023841 TTTACTATAC
69023851 ATTTGTCTTTATATTA
1 ATTTGTCTTTATATTA
69023867 ATTTGTCTTTATATTA
1 ATTTGTCTTTATATTA
69023883 ATTTGT
1 ATTTGT
69023889 TTATCATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.24, C:0.05, G:0.08, T:0.63
Consensus pattern (16 bp):
ATTTGTCTTTATATTA
Found at i:69026783 original size:37 final size:37
Alignment explanation
Indices: 69026733--69026811 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
69026723 TTATTACGAA
* *
69026733 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
69026770 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
69026807 GTCTT
1 GTCTT
69026812 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:69027108 original size:51 final size:51
Alignment explanation
Indices: 69026985--69027234 Score: 417
Period size: 51 Copynumber: 5.1 Consensus size: 51
69026975 GCCCTGTCAC
69026985 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC----
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
*
69027032 ATATATACACTCTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
69027083 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC----
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
* *
69027130 ATATATACACTCTCACATTCATCACGTCGGCCATTAGGCCTTATCACATAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
69027181 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
69027232 ATA
1 ATA
69027235 CACTTTCACA
Statistics
Matches: 189, Mismatches: 6, Indels: 12
0.91 0.03 0.06
Matches are distributed among these distances:
47 91 0.48
51 98 0.52
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (51 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
Found at i:69027127 original size:98 final size:98
Alignment explanation
Indices: 69026930--69027246 Score: 516
Period size: 98 Copynumber: 3.3 Consensus size: 98
69026920 CCCTTCGGGA
* * * * * * * *
69026930 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC----ATATAT
1 CTTATCACATATATACACTCTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATAT
69026991 ACACTTTCACATTCATCACATCGGCCATTAGGC
66 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
69027024 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
1 CTTATCACATATATACACTCTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATAT
69027089 ACACTTTCACATTCATCACATCGGCCATTAGGC
66 ACACTTTCACATTCATCACATCGGCCATTAGGC
69027122 CTTATCACATATATACACTCTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATAT
1 CTTATCACATATATACACTCTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATAT
69027187 ACACTTTCACATTCATCACATCGGCCATTAGGC
66 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
69027220 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTCTCACATT
69027247 TATTCAAATA
Statistics
Matches: 208, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
94 46 0.22
98 162 0.78
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (98 bp):
CTTATCACATATATACACTCTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATAT
ACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69027232 original size:145 final size:141
Alignment explanation
Indices: 69026930--69027246 Score: 463
Period size: 145 Copynumber: 2.2 Consensus size: 141
69026920 CCCTTCGGGA
* * * * * *
69026930 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
69026995 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTCTCACATTCATCACATC
66 TCTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTCTCACATTCATCACATC
69027060 GGCCATTAGGC
131 GGCCATTAGGC
* *
69027071 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATAT
* *
69027136 ACACTCTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTC
62 ACACTCTCACATTCATCACATCGGCCATTAGGCCTTATCAC----ATATATACACTCTCACATTC
69027201 ATCACATCGGCCATTAGGC
123 ATCACATCGGCCATTAGGC
69027220 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
69027247 TATTCAAATA
Statistics
Matches: 157, Mismatches: 11, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
141 8 0.05
145 103 0.66
149 46 0.29
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TCTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTCTCACATTCATCACATC
GGCCATTAGGC
Found at i:69027252 original size:51 final size:47
Alignment explanation
Indices: 69026930--69027246 Score: 463
Period size: 47 Copynumber: 6.6 Consensus size: 47
69026920 CCCTTCGGGA
* * * * * *
69026930 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69026977 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69027024 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69027071 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69027122 CTTATCACATATATACACTCTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69027169 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69027220 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
69027247 TATTCAAATA
Statistics
Matches: 246, Mismatches: 16, Indels: 16
0.88 0.06 0.06
Matches are distributed among these distances:
47 155 0.63
51 91 0.37
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69033091 original size:23 final size:22
Alignment explanation
Indices: 69033046--69033091 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
69033036 CAACCAATCC
*
69033046 AATTCAACATATTTTCAAGATA
1 AATTCAACATATTTTCAAAATA
69033068 AATTCATACATATTTAT-AAAATA
1 AATTCA-ACATATTT-TCAAAATA
69033091 A
1 A
69033092 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.50, C:0.11, G:0.02, T:0.37
Consensus pattern (22 bp):
AATTCAACATATTTTCAAAATA
Found at i:69048211 original size:17 final size:17
Alignment explanation
Indices: 69048189--69048223 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
69048179 TATAGACTCG
*
69048189 TTTAGATATACTTAGTA
1 TTTAGATATAATTAGTA
69048206 TTTAGATATAATTAGTA
1 TTTAGATATAATTAGTA
69048223 T
1 T
69048224 AATATATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.03, G:0.11, T:0.49
Consensus pattern (17 bp):
TTTAGATATAATTAGTA
Found at i:69048501 original size:28 final size:29
Alignment explanation
Indices: 69048448--69048507 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 29
69048438 TTAATTAAAA
*
69048448 TTTTAAAATTTTAAAAAACATAAAAATTAT
1 TTTTAAAA-TTTAAAAAACATAAAAAATAT
* *
69048478 TTTTAAAA-TTAAAAATCATTAAAAATAT
1 TTTTAAAATTTAAAAAACATAAAAAATAT
69048506 TT
1 TT
69048508 ACGGGACAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 19 0.70
30 8 0.30
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (29 bp):
TTTTAAAATTTAAAAAACATAAAAAATAT
Found at i:69056950 original size:79 final size:78
Alignment explanation
Indices: 69056848--69057071 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
69056838 GCTCCTCGTT
* *
69056848 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
69056913 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
69056928 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
69056992 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * * *
69057006 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGAGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
69057070 GA
63 GA
69057072 CATCATTCAA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
78 36 0.29
79 55 0.44
80 34 0.27
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:69056965 original size:39 final size:40
Alignment explanation
Indices: 69056848--69057071 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
69056838 GCTCCTCGTT
* *
69056848 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
69056888 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
69056928 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
69056967 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
69057006 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
*
69057047 CAAA-GCCTTCGAGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69057072 CATCATTCAA
Statistics
Matches: 165, Mismatches: 12, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
38 2 0.01
39 74 0.45
40 77 0.47
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:69073605 original size:15 final size:15
Alignment explanation
Indices: 69073585--69073616 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
69073575 ATAGATTATT
69073585 TATGTGAAAGTGTAG
1 TATGTGAAAGTGTAG
69073600 TATGTGAAAGTGTAG
1 TATGTGAAAGTGTAG
69073615 TA
1 TA
69073617 AAGAAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (15 bp):
TATGTGAAAGTGTAG
Found at i:69077753 original size:22 final size:23
Alignment explanation
Indices: 69077705--69077763 Score: 77
Period size: 23 Copynumber: 2.6 Consensus size: 23
69077695 AACTCACCAT
* *
69077705 AGCTCGTATGAGCTTACTGATTC
1 AGCTCGAAAGAGCTTACTGATTC
69077728 AGCTCGAAAGAGCTTACTG-TTC
1 AGCTCGAAAGAGCTTACTGATTC
69077750 AGCTC-AAGAGAGCT
1 AGCTCGAA-AGAGCT
69077764 ATCCGTTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 2 0.06
22 14 0.42
23 17 0.52
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (23 bp):
AGCTCGAAAGAGCTTACTGATTC
Found at i:69082698 original size:14 final size:15
Alignment explanation
Indices: 69082679--69082711 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
69082669 CATTTCAACT
*
69082679 TAAACC-TAATTCCA
1 TAAACCTTAATTACA
69082693 TAAACCTTAATTACA
1 TAAACCTTAATTACA
69082708 TAAA
1 TAAA
69082712 TCCATAACCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAACCTTAATTACA
Found at i:69086404 original size:15 final size:17
Alignment explanation
Indices: 69086373--69086404 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
69086363 GTGGTGTGTC
69086373 CACAACACATGCAGGAT
1 CACAACACATGCAGGAT
69086390 CACAACA-AT-CAGGAT
1 CACAACACATGCAGGAT
69086405 GCTCTGAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 2 0.13
17 7 0.47
ACGTcount: A:0.44, C:0.28, G:0.16, T:0.12
Consensus pattern (17 bp):
CACAACACATGCAGGAT
Found at i:69094274 original size:5 final size:5
Alignment explanation
Indices: 69094266--69094308 Score: 50
Period size: 5 Copynumber: 7.8 Consensus size: 5
69094256 ATAAAAAATC
69094266 TTATT TTATTT TTATT TTATT TATCATT TTATT TTGATT TTAT
1 TTATT TTA-TT TTATT TTATT T-T-ATT TTATT TT-ATT TTAT
69094309 GTTAAATTAG
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
5 18 0.53
6 12 0.35
7 4 0.12
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (5 bp):
TTATT
Found at i:69094282 original size:11 final size:11
Alignment explanation
Indices: 69094266--69094308 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
69094256 ATAAAAAATC
69094266 TTATTTTATTT
1 TTATTTTATTT
69094277 TTATTTTATTT
1 TTATTTTATTT
*
69094288 ATCATTTTATTT
1 -TTATTTTATTT
*
69094300 TGATTTTAT
1 TTATTTTAT
69094309 GTTAAATTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
11 19 0.66
12 10 0.34
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (11 bp):
TTATTTTATTT
Found at i:69103573 original size:19 final size:20
Alignment explanation
Indices: 69103546--69103599 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 20
69103536 TTAGTTGTAA
*
69103546 TTAAACTTAATTA-TAT-AGT
1 TTAATCTTAATTATTATCA-T
69103565 TTAATCTTAATTAATTATCAT
1 TTAATCTTAATT-ATTATCAT
69103586 TTAATCTTTAATTA
1 TTAATC-TTAATTA
69103600 ACTAATGTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 11 0.37
20 1 0.03
21 11 0.37
22 7 0.23
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (20 bp):
TTAATCTTAATTATTATCAT
Found at i:69103611 original size:21 final size:20
Alignment explanation
Indices: 69103564--69103603 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
69103554 AATTATATAG
*
69103564 TTTAATCTTAATTAATTATCA
1 TTTAATCTTAATTAACTA-CA
69103585 TTTAATCTTTAATTAACTA
1 TTTAATC-TTAATTAACTA
69103604 ATGTTAATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTAATCTTAATTAACTACA
Found at i:69106310 original size:46 final size:47
Alignment explanation
Indices: 69106182--69106443 Score: 263
Period size: 46 Copynumber: 5.6 Consensus size: 47
69106172 AGGCCGACGC
* * * *
69106182 CATGTCCCAAACACGCTCTTACACTAGCTCTCACATATTCGT-GCCGATG
1 CATGTCCCAGACATG-TCTTACACTGGCTCT-ACAT-CTCGTAGCCGATG
* *
69106231 CCATGTCCCAGACATGGTCTTAGACT-G-AC-ACATCTCGTAGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTACATCTCGTAGCCGATG
*
69106277 CATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAAGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTACATCTCGTAGCCGATG
* * *
69106323 CATGTCCCAGACATGTCTTACACTAGCTCT-CATCTC-AATGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTACATCTCGTA-GCCGATG
* * *
69106369 ACATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCAATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTACAT-CTCGTAGCCGATG
69106417 CATGTCCCAGACATGTCTTACACTGGC
1 CATGTCCCAGACATGTCTTACACTGGC
69106444 ACACAAATAA
Statistics
Matches: 187, Mismatches: 14, Indels: 26
0.82 0.06 0.11
Matches are distributed among these distances:
44 9 0.05
45 21 0.11
46 79 0.42
47 29 0.16
48 26 0.14
49 2 0.01
50 20 0.11
51 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.26
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTACATCTCGTAGCCGATG
Found at i:69106390 original size:94 final size:90
Alignment explanation
Indices: 69106224--69106446 Score: 254
Period size: 94 Copynumber: 2.4 Consensus size: 90
69106214 ACATATTCGT
* * *
69106224 GCCGATGCCATGTCCCAGACATGGTCTTAGACTGACACATCTCGTAGCCGATGCATGTCCCAGAC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACACATCTCATAGCCAATGCATGTCCCAGAC
*
69106289 ATGTCTTACACTGGCT-TACAT-CTCGAA
64 ATGTCTTACACTGGCTCT-CATAAT-GAA
* *
69106316 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCA-ATGCCAATGACATGTCCCAG
1 GCCGATGCATGTCCCAGACATGTCTTACACT-G-ACACATCTCATA-GCCAATG-CATGTCCCAG
**
69106380 ACATGGTCTTACACTGGCTCTCATAATGTG
62 ACAT-GTCTTACACTGGCTCTCATAATGAA
* *
69106410 GCCAATGCATGTCCCAGACATGTCTTACACTGGCACA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGACACA
69106447 CAAATAACCC
Statistics
Matches: 113, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
90 9 0.08
91 16 0.14
92 23 0.20
93 15 0.13
94 48 0.42
95 2 0.02
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (90 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACACATCTCATAGCCAATGCATGTCCCAGACAT
GTCTTACACTGGCTCTCATAATGAA
Found at i:69106418 original size:140 final size:143
Alignment explanation
Indices: 69106075--69106443 Score: 393
Period size: 140 Copynumber: 2.6 Consensus size: 143
69106065 CATAGGGTAT
*
69106075 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT--CTATGCCATGT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-CAT-AAGTGCCAATG-CATGT
* * * *
69106138 CCTAGATATGGTCTTACACTGACTATCAAAATTGAGGCCGACGCCATGTCCCAAACACGCTCTTA
63 CCCAGACAT-GTCTTACACTGGCTAT-AAAATTGAAGCCGACGCCATGTCCCAAACACGCTCTTA
*
69106203 CACTAGCTCTCACATATTC
126 CACTAGCTCT-ACATACTC
* * * * * *
69106222 -GTGCCGATGCCATGTCCCAGACATGGTCTTAGACTGACACATC-T-CGTAGCCGATGCATGTCC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATAAGT-GCCAATGCATGTCC
* * * *
69106284 CAGACATGTCTTACACTGGCT-T-ACATCTCGAAGCCGATG-CATGTCCCAGACATG-TCTTACA
65 CAGACATGTCTTACACTGGCTATAAAAT-T-GAAGCCGACGCCATGTCCCAAACACGCTCTTACA
69106345 CTAGCTCT-CAT-CTC
128 CTAGCTCTACATACTC
* *
69106359 AATGCCAATGACATGTCCCAGACATGGTCTTACACTGGCTC-TCATAATGTGGCCAATGCATGTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATAA-GT-GCCAATGCATGTC
69106423 CCAGACATGTCTTACACTGGC
64 CCAGACATGTCTTACACTGGC
69106444 ACACAAATAA
Statistics
Matches: 189, Mismatches: 24, Indels: 25
0.79 0.10 0.11
Matches are distributed among these distances:
137 4 0.02
138 38 0.20
140 53 0.28
141 14 0.07
142 11 0.06
143 13 0.07
144 13 0.07
145 5 0.03
146 38 0.20
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (143 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATAAGTGCCAATGCATGTCCC
AGACATGTCTTACACTGGCTATAAAATTGAAGCCGACGCCATGTCCCAAACACGCTCTTACACTA
GCTCTACATACTC
Found at i:69110979 original size:6 final size:6
Alignment explanation
Indices: 69110948--69110996 Score: 53
Period size: 6 Copynumber: 8.0 Consensus size: 6
69110938 CATATTTGCT
* * * *
69110948 ATCTGA ATCTAA ATCCGA TATTTGA ATCTGA ATCTGA ATCTGA AACTGA
1 ATCTGA ATCTGA ATCTGA -ATCTGA ATCTGA ATCTGA ATCTGA ATCTGA
69110997 GCATGTATGT
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
6 31 0.89
7 4 0.11
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (6 bp):
ATCTGA
Found at i:69110979 original size:25 final size:26
Alignment explanation
Indices: 69110939--69110987 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
69110929 GGATTTTGGC
*
69110939 ATATTTGCTATCTGAATCTAAATCCG
1 ATATTTGCAATCTGAATCTAAATCCG
*
69110965 ATATTTG-AATCTGAATCTGAATC
1 ATATTTGCAATCTGAATCTAAATC
69110988 TGAAACTGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (26 bp):
ATATTTGCAATCTGAATCTAAATCCG
Found at i:69113039 original size:39 final size:39
Alignment explanation
Indices: 69112922--69113183 Score: 311
Period size: 39 Copynumber: 6.6 Consensus size: 39
69112912 GCTCCTCGTT
* * *
69112922 CAAATGCCTTCAGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTC-GGGCTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
69112962 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
69113002 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
69113041 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
*
69113080 CAAATGCCTTCAGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
69113119 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
69113160 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
69113184 CATCATTCAA
Statistics
Matches: 200, Mismatches: 14, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
39 132 0.66
40 57 0.28
41 11 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:69124919 original size:27 final size:28
Alignment explanation
Indices: 69124883--69124985 Score: 129
Period size: 27 Copynumber: 3.7 Consensus size: 28
69124873 ACCAAAAGTA
*
69124883 CCCTCCGATTTACAG-ATTACCATTCTAC
1 CCCT-CGATTTACAGAATTACCATTTTAC
*
69124911 CCCTCGATTTATAGAATTACCATTTTA-
1 CCCTCGATTTACAGAATTACCATTTTAC
* * *
69124938 CCCTCAATTTATAGAATTATCATTTTAC
1 CCCTCGATTTACAGAATTACCATTTTAC
*
69124966 CCCTCGATTTACAAAATTAC
1 CCCTCGATTTACAGAATTAC
69124986 TAAAATACCC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
27 34 0.52
28 31 0.48
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.37
Consensus pattern (28 bp):
CCCTCGATTTACAGAATTACCATTTTAC
Found at i:69124967 original size:55 final size:55
Alignment explanation
Indices: 69124881--69124985 Score: 140
Period size: 55 Copynumber: 1.9 Consensus size: 55
69124871 TTACCAAAAG
* * *
69124881 TACCCTCCGATTTACAGATTACCATTCTACCCCTCGATTTATAGAATTACCATTT
1 TACCCTCCAATTTACAGATTACCATTCTACCCCTCGATTTACAAAATTACCATTT
* * *
69124936 TACCCT-CAATTTATAGAATTATCATTTTACCCCTCGATTTACAAAATTAC
1 TACCCTCCAATTTACAG-ATTACCATTCTACCCCTCGATTTACAAAATTAC
69124986 TAAAATACCC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 8 0.19
55 35 0.81
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.37
Consensus pattern (55 bp):
TACCCTCCAATTTACAGATTACCATTCTACCCCTCGATTTACAAAATTACCATTT
Found at i:69124994 original size:28 final size:28
Alignment explanation
Indices: 69124963--69125095 Score: 123
Period size: 27 Copynumber: 4.9 Consensus size: 28
69124953 ATTATCATTT
*
69124963 TACCCCTCGATTTACAAAATTACTAAAA
1 TACCCCTCGATTTATAAAATTACTAAAA
* *
69124991 TACCCCTAG-TTTGTAAAATTACTAAAA
1 TACCCCTCGATTTATAAAATTACTAAAA
* * * *
69125018 TACCCCT-AACTTGTAAAATTACTGAAA
1 TACCCCTCGATTTATAAAATTACTAAAA
* *
69125045 TA-CCCTCGACTTGTA-AAAATTACCAAAG
1 TACCCCTCGA-TT-TATAAAATTACTAAAA
*
69125073 TA-CCCTCGATTTATAGAATTACT
1 TACCCCTCGATTTATAAAATTACT
69125096 GTTTTAACTC
Statistics
Matches: 86, Mismatches: 14, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
26 6 0.07
27 51 0.59
28 28 0.33
29 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.31
Consensus pattern (28 bp):
TACCCCTCGATTTATAAAATTACTAAAA
Found at i:69124995 original size:55 final size:55
Alignment explanation
Indices: 69124871--69124995 Score: 135
Period size: 55 Copynumber: 2.3 Consensus size: 55
69124861 GAATATTTAG
* * *
69124871 TTACCAAAAGTACCCTCCGATTTACAGATTACCATTCTACCCCTCGATTTATAGAA
1 TTACCAAAA-TACCCTCCAATTTACAGATTACCATTCTACCCCTCGATTTACAAAA
*** * * *
69124927 TTACCATTTTACCCT-CAATTTATAGAATTATCATTTTACCCCTCGATTTACAAAA
1 TTACCAAAATACCCTCCAATTTACAG-ATTACCATTCTACCCCTCGATTTACAAAA
*
69124982 TTACTAAAATACCC
1 TTACCAAAATACCC
69124996 CTAGTTTGTA
Statistics
Matches: 55, Mismatches: 13, Indels: 3
0.77 0.18 0.04
Matches are distributed among these distances:
54 8 0.15
55 41 0.75
56 6 0.11
ACGTcount: A:0.34, C:0.26, G:0.06, T:0.34
Consensus pattern (55 bp):
TTACCAAAATACCCTCCAATTTACAGATTACCATTCTACCCCTCGATTTACAAAA
Found at i:69125022 original size:55 final size:56
Alignment explanation
Indices: 69124963--69125095 Score: 139
Period size: 55 Copynumber: 2.4 Consensus size: 56
69124953 ATTATCATTT
* * *
69124963 TACCCCTCGATTTACAAAATTACTAAAATACCCCTAG-TTTGT-AAAATTACTAAAA
1 TACCCCTCGATTTATAAAATTACTAAAATA-CCCTAGACTTGTAAAAATTACCAAAA
* * * * * *
69125018 TACCCCT-AACTTGTAAAATTACTGAAATACCCTCGACTTGTAAAAATTACCAAAG
1 TACCCCTCGATTTATAAAATTACTAAAATACCCTAGACTTGTAAAAATTACCAAAA
*
69125073 TA-CCCTCGATTTATAGAATTACT
1 TACCCCTCGATTTATAAAATTACT
69125096 GTTTTAACTC
Statistics
Matches: 62, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
53 5 0.08
54 25 0.40
55 32 0.52
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.31
Consensus pattern (56 bp):
TACCCCTCGATTTATAAAATTACTAAAATACCCTAGACTTGTAAAAATTACCAAAA
Found at i:69125108 original size:28 final size:27
Alignment explanation
Indices: 69125073--69125167 Score: 118
Period size: 28 Copynumber: 3.4 Consensus size: 27
69125063 ATTACCAAAG
69125073 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* *
69125100 TAACTCTCGATTTATAGAATTACTATTTT
1 T-ACCCTCGATTTATAGAATTACT-GTTT
* * *
69125129 TACCCTTGATTTACAAAAATTACTGTTT
1 TACCCTCGATTTA-TAGAATTACTGTTT
69125157 TACCCTCGATT
1 TACCCTCGATT
69125168 GTGAATTACT
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
27 1 0.02
28 44 0.77
29 12 0.21
ACGTcount: A:0.28, C:0.19, G:0.08, T:0.44
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:69125326 original size:26 final size:25
Alignment explanation
Indices: 69125251--69125326 Score: 71
Period size: 26 Copynumber: 2.9 Consensus size: 25
69125241 CTGGTTTGTG
**
69125251 AAATTACCGAAATACCTTCAATTTGT
1 AAATTACCGAAATACCTT-AATTTAC
* * *
69125277 AAATTACCCAAATACCCCTGATTTAC
1 AAATTACCGAAATA-CCTTAATTTAC
*
69125303 AAATTACAGAAATACTCTTAATTT
1 AAATTACCGAAATAC-CTTAATTT
69125327 GTAGATTTAC
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
25 1 0.03
26 35 0.90
27 3 0.08
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.33
Consensus pattern (25 bp):
AAATTACCGAAATACCTTAATTTAC
Found at i:69126168 original size:19 final size:20
Alignment explanation
Indices: 69126128--69126213 Score: 131
Period size: 20 Copynumber: 4.3 Consensus size: 20
69126118 GATATAATAT
*
69126128 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
69126148 ACATGATATGTAT-AAATGC
1 ACATGATATGTATGAAATGC
69126167 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
*
69126187 ATATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
69126207 ACATGAT
1 ACATGAT
69126214 GTATTCATAA
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
19 18 0.30
20 41 0.67
21 2 0.03
ACGTcount: A:0.40, C:0.09, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:69126181 original size:39 final size:40
Alignment explanation
Indices: 69126128--69126213 Score: 131
Period size: 39 Copynumber: 2.2 Consensus size: 40
69126118 GATATAATAT
*
69126128 ACATGATTGATATGATATGCACATGATATGTAT-AAATGC
1 ACATGATTGATATGAAATGCACATGATATGTATGAAATGC
*
69126167 ACATGATATG-TATGAAATGCATATGATATGTATGAAATGC
1 ACATGAT-TGATATGAAATGCACATGATATGTATGAAATGC
69126207 ACATGAT
1 ACATGAT
69126214 GTATTCATAA
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
39 28 0.65
40 15 0.35
ACGTcount: A:0.40, C:0.09, G:0.19, T:0.33
Consensus pattern (40 bp):
ACATGATTGATATGAAATGCACATGATATGTATGAAATGC
Found at i:69126335 original size:25 final size:26
Alignment explanation
Indices: 69126262--69126350 Score: 135
Period size: 26 Copynumber: 3.5 Consensus size: 26
69126252 GAAGAAGTGC
69126262 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
69126288 AAAAGGGCTTATGCCCCAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
69126314 AAAAGGG-TTATGCTCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
69126339 AAAAGGGCTTAT
1 AAAAGGGCTTAT
69126351 CCAGTTTAGA
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
25 21 0.37
26 36 0.63
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:69127873 original size:40 final size:40
Alignment explanation
Indices: 69127829--69128050 Score: 226
Period size: 40 Copynumber: 5.6 Consensus size: 40
69127819 GCTCCTCGTT
*
69127829 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
69127869 CAAATGCCTTC-GGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
69127908 CAAATGCCATCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
69127948 CCAATGCCTTCGGG-CTTAG-CCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * * *
69127986 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
69128027 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
69128051 ACATCATTCA
Statistics
Matches: 156, Mismatches: 16, Indels: 20
0.81 0.08 0.10
Matches are distributed among these distances:
37 2 0.01
38 25 0.16
39 42 0.27
40 76 0.49
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:69127903 original size:39 final size:39
Alignment explanation
Indices: 69127829--69128004 Score: 230
Period size: 40 Copynumber: 4.5 Consensus size: 39
69127819 GCTCCTCGTT
* *
69127829 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAACCCGGATT-TAGTAACTCGCA
69127869 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
*
69127908 CAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
* * * * *
69127948 CCAATGCCTTCGGGCTT-AGCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
69127986 CAAATGCCTTCGGATCTTA
1 CAAATGCCTTCGGA-CTTA
69128005 GTCCGGATAT
Statistics
Matches: 121, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
38 30 0.25
39 41 0.34
40 50 0.41
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:69127932 original size:79 final size:78
Alignment explanation
Indices: 69127829--69127998 Score: 243
Period size: 79 Copynumber: 2.2 Consensus size: 78
69127819 GCTCCTCGTT
*
69127829 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGACTT-ACCCGG
*
69127893 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* * * * *
69127908 CAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCGGAA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGACTTACCCGGAA
*
69127973 TTAGTATCTCGCA
66 TTAGTAACTCGCA
69127986 CAAATGCCTTCGG
1 CAAATGCCTTCGG
69127999 ATCTTAGTCC
Statistics
Matches: 81, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
78 30 0.37
79 49 0.60
80 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (78 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGACTTACCCGGAA
TTAGTAACTCGCA
Found at i:69128035 original size:78 final size:78
Alignment explanation
Indices: 69127829--69128047 Score: 210
Period size: 79 Copynumber: 2.8 Consensus size: 78
69127819 GCTCCTCGTT
* * * * * * *
69127829 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA-CAAATGCCTTCGGACTTAACCCGG
1 CAAATGCCATCGGGACTTAACCCGGATATAGTAACTAGCACCAAA-GCCTTCGGGCTT-AGCCGG
*
69127893 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* * *
69127908 CAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCGGAA
1 CAAATGCCATCGGGACTTAACCCGGATATAGTAACTAGCACCAAAGCCTTCGGGCTTAGCCGGAA
*
69127973 TTAGTATCTCGCA
66 TTAGTAACTCGCA
* ** * * *
69127986 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGC-GCAAAGCCTTCGGGACTTAGCC
1 CAAATGCCATCGGGA-CTTAACCCGGATATAGTAAC-TAGCACCAAAGCCTTCGGG-CTTAGCC
69128048 CGGACATCAT
Statistics
Matches: 117, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
77 3 0.03
78 55 0.47
79 56 0.48
80 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCATCGGGACTTAACCCGGATATAGTAACTAGCACCAAAGCCTTCGGGCTTAGCCGGAA
TTAGTAACTCGCA
Found at i:69135751 original size:40 final size:40
Alignment explanation
Indices: 69135707--69135926 Score: 267
Period size: 40 Copynumber: 5.7 Consensus size: 40
69135697 GCTCCTCGTT
* *
69135707 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
69135747 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
69135787 CAAATGCCTTCGGG-CTTAGCCCGGAT-TAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
69135825 C-AATGCCTTC-GG-CTTAGCCCGGA-ATTGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
69135861 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
69135902 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69135927 CATCATTCAA
Statistics
Matches: 160, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
36 25 0.16
37 20 0.12
38 12 0.08
39 21 0.13
40 71 0.44
41 11 0.07
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:69135886 original size:114 final size:118
Alignment explanation
Indices: 69135709--69135926 Score: 286
Period size: 114 Copynumber: 1.9 Consensus size: 118
69135699 TCCTCGTTCA
*
69135709 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGTAATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
69135774 TTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGATTAGTATCTCGCAC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGATTAGTATCTCGCAC
* * * **
69135826 AATGCCTTC-GG-CTTAGCCCGG-AATTGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAGCCCGGTAATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
* *
69135887 TATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
65 TATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
69135927 CATCATTCAA
Statistics
Matches: 88, Mismatches: 10, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
113 3 0.03
114 46 0.52
115 28 0.32
116 2 0.02
117 9 0.10
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (118 bp):
AATGCCTTCGGGACATAGCCCGGTAATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGATTAGTATCTCGCAC
Found at i:69143747 original size:39 final size:40
Alignment explanation
Indices: 69143591--69143760 Score: 240
Period size: 40 Copynumber: 4.3 Consensus size: 40
69143581 GCTCCTCGTT
* *
69143591 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
69143631 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
69143671 CAAATGCCTTCGGG-CTTAG-CCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
69143709 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
69143748 CAAATGCCTTCGG
1 CAAATGCCTTCGG
69143761 ATCTTACAAA
Statistics
Matches: 121, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
38 35 0.29
39 35 0.29
40 49 0.40
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:69143771 original size:19 final size:19
Alignment explanation
Indices: 69143747--69143785 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
69143737 AGTATCTCGC
69143747 ACAAATGCCTTCGGATCTT
1 ACAAATGCCTTCGGATCTT
69143766 ACAAATGCCTTCGGATCTT
1 ACAAATGCCTTCGGATCTT
69143785 A
1 A
69143786 GTCCGGATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (19 bp):
ACAAATGCCTTCGGATCTT
Found at i:69146078 original size:102 final size:102
Alignment explanation
Indices: 69145902--69146103 Score: 370
Period size: 102 Copynumber: 2.0 Consensus size: 102
69145892 CTAGGGTAAA
*
69145902 ATTGTAAATTAGCCAAAATGAATGTGTTAGGCTAAATTGAATTGAATGAAAGTTTGAATGAGTTA
1 ATTGTAAATTAGCCAAAATGAATGTGTTAGGCTAAATTGAATTGAATGAAAGTTTGAATAAGTTA
69145967 ATTTGATATTATATAGATCAAGATAAGCAAATATCAG
66 ATTTGATATTATATAGATCAAGATAAGCAAATATCAG
*
69146004 ATTGTAAATTAGCCAAAATGAATGTGTTTA-GCTAATTTGAATTGAATGAAAGTTTGAATAAGTT
1 ATTGTAAATTAGCCAAAATGAATGTG-TTAGGCTAAATTGAATTGAATGAAAGTTTGAATAAGTT
69146068 AATTTGATATTATATAGATCAAGATAAGCAAATATC
65 AATTTGATATTATATAGATCAAGATAAGCAAATATC
69146104 GAAACTAGAT
Statistics
Matches: 97, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
102 94 0.97
103 3 0.03
ACGTcount: A:0.42, C:0.06, G:0.17, T:0.35
Consensus pattern (102 bp):
ATTGTAAATTAGCCAAAATGAATGTGTTAGGCTAAATTGAATTGAATGAAAGTTTGAATAAGTTA
ATTTGATATTATATAGATCAAGATAAGCAAATATCAG
Found at i:69146451 original size:22 final size:22
Alignment explanation
Indices: 69146410--69146493 Score: 100
Period size: 22 Copynumber: 3.7 Consensus size: 22
69146400 TTTAGCTCAT
69146410 TAGAGCTTACCGT-TTCAGCTCGA
1 TAGAGCTTA-C-TATTCAGCTCGA
69146433 TAGAGCTTACTATTCAGCTCGA
1 TAGAGCTTACTATTCAGCTCGA
*
69146455 TAGAGCTTACTGTTTCAGCTC-A
1 TAGAGCTTACT-ATTCAGCTCGA
*
69146477 TTAGAGTTTACTATTCA
1 -TAGAGCTTACTATTCA
69146494 TCAGCTCAGG
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
21 1 0.02
22 27 0.49
23 27 0.49
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (22 bp):
TAGAGCTTACTATTCAGCTCGA
Found at i:69146481 original size:23 final size:23
Alignment explanation
Indices: 69146378--69146515 Score: 120
Period size: 23 Copynumber: 5.9 Consensus size: 23
69146368 GGACTCACCA
* *
69146378 CAGCTCGTAAGAGCTTACTGTTTT
1 CAGCTCATTAGAGCTTACTG-TTT
* *
69146402 TAGCTCATTAGAGCTTACCGTTT
1 CAGCTCATTAGAGCTTACTGTTT
*
69146425 CAGCTCGA-TAGAGCTTACT-ATT
1 CAGCTC-ATTAGAGCTTACTGTTT
69146447 CAGCTCGA-TAGAGCTTACTGTTT
1 CAGCTC-ATTAGAGCTTACTGTTT
* *
69146470 CAGCTCATTAGAGTTTACTATTCAT
1 CAGCTCATTAGAGCTTACTGTT--T
**
69146495 CAGCTCAGGAGGAGCTTACTG
1 CAGCTCATTA-GAGCTTACTG
69146516 ATCATGGCTC
Statistics
Matches: 94, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
22 22 0.23
23 38 0.40
24 17 0.18
25 9 0.10
26 8 0.09
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (23 bp):
CAGCTCATTAGAGCTTACTGTTT
Found at i:69150608 original size:46 final size:46
Alignment explanation
Indices: 69150555--69150819 Score: 249
Period size: 46 Copynumber: 5.7 Consensus size: 46
69150545 TATTTGGGCA
*
69150555 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
69150601 TCCGAACTCGTT-AGTTGAGTCCGAGTTC-GTGA--GATGTAACTAAGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGAA-CG
*
69150647 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * *
69150693 TCCGAACTCATTGAGTTGAGTCCGACTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* * *
69150738 CATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
69150786 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
69150820 GGGGCGGGTT
Statistics
Matches: 176, Mismatches: 26, Indels: 34
0.75 0.11 0.14
Matches are distributed among these distances:
42 7 0.04
43 4 0.02
44 2 0.01
45 21 0.12
46 83 0.47
47 44 0.25
48 4 0.02
50 8 0.05
51 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:69150755 original size:93 final size:93
Alignment explanation
Indices: 69150551--69150810 Score: 432
Period size: 93 Copynumber: 2.8 Consensus size: 93
69150541 CAGATATTTG
* *
69150551 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTT-AG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
69150615 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGACTTCGTGAGATGTAACTA
* *
69150643 AGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
69150708 TTGAGTCCGACTTCGTGAGATGTAACTA
66 TTGAGTCCGACTTCGTGAGATGTAACTA
* ** *
69150736 GGCATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
69150801 TTGAGTCCGA
66 TTGAGTCCGA
69150811 GTTCACTTAG
Statistics
Matches: 156, Mismatches: 11, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
92 58 0.37
93 98 0.63
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGACTTCGTGAGATGTAACTA
Found at i:69156872 original size:23 final size:23
Alignment explanation
Indices: 69156790--69156873 Score: 66
Period size: 23 Copynumber: 3.7 Consensus size: 23
69156780 AACTGTTTTT
* *
69156790 AGCTCATTGGAGCTTACCGTTTC
1 AGCTCATTAGAGCTTATCGTTTC
* *
69156813 AGCTC-GTATGAGCTTATTG-TTC
1 AGCTCATTA-GAGCTTATCGTTTC
** *
69156835 AAATCGA-TAGAGCTTATCGTTTT
1 AGCTC-ATTAGAGCTTATCGTTTC
69156858 AGCTCATTAGAGCTTA
1 AGCTCATTAGAGCTTA
69156874 CTGTTCATCA
Statistics
Matches: 46, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
22 17 0.37
23 29 0.63
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (23 bp):
AGCTCATTAGAGCTTATCGTTTC
Found at i:69171460 original size:26 final size:26
Alignment explanation
Indices: 69171424--69171491 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
69171414 ACTCGAAAAA
69171424 GCTCACACGAGTTGTGAAATGAGCCT
1 GCTCACACGAGTTGTGAAATGAGCCT
*
69171450 GCTCACACGAGTTGTGAAATGGGCCT
1 GCTCACACGAGTTGTGAAATGAGCCT
69171476 GCTCACACGAGTTGTG
1 GCTCACACGAGTTGTG
69171492 GGTCAAAATG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (26 bp):
GCTCACACGAGTTGTGAAATGAGCCT
Found at i:69175073 original size:30 final size:30
Alignment explanation
Indices: 69175027--69175120 Score: 152
Period size: 30 Copynumber: 3.1 Consensus size: 30
69175017 TTTTATTATG
*
69175027 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
69175058 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
69175088 CCATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
69175118 CCA
1 CCA
69175121 TAAATATGGA
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
30 53 0.88
31 7 0.12
ACGTcount: A:0.26, C:0.26, G:0.06, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:69175082 original size:15 final size:15
Alignment explanation
Indices: 69175037--69175114 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
69175027 CCAATATCTC
69175037 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
69175052 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
69175067 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
69175082 GACTTTCCAT-TATTT
1 GA-TACCCATATCTTT
69175097 GATACCCATATCTTT
1 GATACCCATATCTTT
69175112 GAT
1 GAT
69175115 TTTCCATAAA
Statistics
Matches: 47, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
14 9 0.19
15 29 0.62
16 9 0.19
ACGTcount: A:0.26, C:0.23, G:0.08, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:69179736 original size:30 final size:30
Alignment explanation
Indices: 69179690--69179813 Score: 194
Period size: 30 Copynumber: 4.1 Consensus size: 30
69179680 TTTTATTATG
*
69179690 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
69179721 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
69179751 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
** * *
69179781 TTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
69179811 CCA
1 CCA
69179814 TAAATATGGA
Statistics
Matches: 86, Mismatches: 7, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
30 79 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.23, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:69179745 original size:15 final size:15
Alignment explanation
Indices: 69179700--69179807 Score: 69
Period size: 15 Copynumber: 7.2 Consensus size: 15
69179690 CCAATATCTC
69179700 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
69179715 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
69179730 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
69179745 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
69179760 GATACCCATATCTTT
1 GATACCCATATCTTT
**** *
69179775 GACTTTTTAT-TATTT
1 GA-TACCCATATCTTT
69179790 GATACCCATATCTTT
1 GATACCCATATCTTT
69179805 GAT
1 GAT
69179808 TTTCCATAAA
Statistics
Matches: 65, Mismatches: 22, Indels: 12
0.66 0.22 0.12
Matches are distributed among these distances:
14 11 0.17
15 43 0.66
16 11 0.17
ACGTcount: A:0.26, C:0.21, G:0.07, T:0.45
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:69180503 original size:27 final size:28
Alignment explanation
Indices: 69180459--69180517 Score: 93
Period size: 27 Copynumber: 2.1 Consensus size: 28
69180449 TTGTACTTTT
*
69180459 TTTAATTAATAACATTATTTTATTTTAA
1 TTTAATTAATAAAATTATTTTATTTTAA
*
69180487 TTTAATT-ATAAAATTATTTTATTTTAT
1 TTTAATTAATAAAATTATTTTATTTTAA
69180514 TTTA
1 TTTA
69180518 TGAAATTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 22 0.76
28 7 0.24
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (28 bp):
TTTAATTAATAAAATTATTTTATTTTAA
Found at i:69180506 original size:22 final size:22
Alignment explanation
Indices: 69180478--69180551 Score: 73
Period size: 22 Copynumber: 3.5 Consensus size: 22
69180468 TAACATTATT
69180478 TTATTTTAATTTAATTATAAAA
1 TTATTTTAATTTAATTATAAAA
* * *
69180500 TTATTTTATTTTATTTTATGAAA
1 TTATTTTAATTTA-ATTATAAAA
*
69180523 TTA-TTTAATTT-ATT-TTAAA
1 TTATTTTAATTTAATTATAAAA
*
69180542 TTATATTAAT
1 TTATTTTAAT
69180552 GTGGAGAGCT
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
19 7 0.16
20 7 0.16
22 19 0.44
23 10 0.23
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (22 bp):
TTATTTTAATTTAATTATAAAA
Found at i:69181129 original size:28 final size:28
Alignment explanation
Indices: 69181071--69181129 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
69181061 ATTATTAATG
** *
69181071 ATAAAATTATATTTTAATCTTTAAAATA
1 ATAAAATTATATTTTAATCGATAAAAAA
*
69181099 ATAAAATTATATTTTTA-CGATAATAAAA
1 ATAAAATTATATTTTAATCGATAA-AAAA
69181127 ATA
1 ATA
69181130 TATAATTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 4 0.15
28 22 0.85
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (28 bp):
ATAAAATTATATTTTAATCGATAAAAAA
Found at i:69181488 original size:4 final size:4
Alignment explanation
Indices: 69181479--69181505 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
69181469 TGCTCCAAGG
69181479 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
69181506 TGTTAATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:69187038 original size:19 final size:19
Alignment explanation
Indices: 69187014--69187050 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
69187004 CAAATTTAAC
*
69187014 AATTAAGCTTAATTAAATA
1 AATTAAGATTAATTAAATA
*
69187033 AATTAAGATTGATTAAAT
1 AATTAAGATTAATTAAAT
69187051 CTAAAACATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (19 bp):
AATTAAGATTAATTAAATA
Found at i:69187288 original size:13 final size:14
Alignment explanation
Indices: 69187258--69187291 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
69187248 AAAAGTAAGT
*
69187258 CATTTTCTAGAAAT
1 CATTTTCTAGAAAC
69187272 CATTTTCT-GAAAC
1 CATTTTCTAGAAAC
69187285 CATTTTC
1 CATTTTC
69187292 AGTGAAACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.29, C:0.21, G:0.06, T:0.44
Consensus pattern (14 bp):
CATTTTCTAGAAAC
Found at i:69192851 original size:144 final size:144
Alignment explanation
Indices: 69192477--69192855 Score: 508
Period size: 144 Copynumber: 2.6 Consensus size: 144
69192467 GTGAATTACC
* * * * *
69192477 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCTGATGCCATGTCCCAGAC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCTGATGCCATGTTCCAAAC
* * *** * *
69192542 ATGGTCTTACACTAGCTCTCGCCTCATTGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
66 ATGGTCTTACACTAGCACACATATCAATGTCGATGCCATGTCCCAAACATGGTCTTACACTAGCT
* ** *
69192607 CTCATAATGTGGCT
131 CTCACAACATCGCT
*
69192621 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATGCCATGTTCCAAA
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAT-ATCGTGGCTGATGCCATGTTCCAAA
* ** * *
69192685 CATGCTCTTACACTAGTGCACATATCAATGTCGATGCCATGTCCCAAATATGGTCTTACACTGGC
65 CATGGTCTTACACTAGCACACATATCAATGTCGATGCCATGTCCCAAACATGGTCTTACACTAGC
69192750 TCTCACAACATCGCT
130 TCTCACAACATCGCT
* *
69192765 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGTGGCTAATGCCATGTTCCAAAC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCTGATGCCATGTTCCAAAC
* *
69192830 ATGGTCTTAAACTGGCACACATATCA
66 ATGGTCTTACACTAGCACACATATCA
69192856 CCCAAATGTC
Statistics
Matches: 204, Mismatches: 29, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
143 2 0.01
144 201 0.99
145 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (144 bp):
GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCTGATGCCATGTTCCAAAC
ATGGTCTTACACTAGCACACATATCAATGTCGATGCCATGTCCCAAACATGGTCTTACACTAGCT
CTCACAACATCGCT
Found at i:69192854 original size:48 final size:48
Alignment explanation
Indices: 69192477--69192838 Score: 401
Period size: 48 Copynumber: 7.5 Consensus size: 48
69192467 GTGAATTACC
* * * *
69192477 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGTGGCT
* * *** * *
69192525 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGCCTCATTG-T
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGTGGCT
* *
69192572 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTGGCT
1 -GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCAT-ATCGTGGCT
* *
69192621 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCAT-ATCGTGGCT
* * * *
69192669 GATGCCATGTTCCAAACATGCTCTTACACTAG-TGCACATATCAATGTC-
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCT-CTCATATC-GTGGCT
* * * * * * *
69192717 GATGCCATGTCCCAAATATGGTCTTACACTGGCTCTCACAACATCGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGTGGCT
69192765 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGTGGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGTGGCT
*
69192813 AATGCCATGTTCCAAACATGGTCTTA
1 GATGCCATGTTCCAAACATGGTCTTA
69192839 AACTGGCACA
Statistics
Matches: 265, Mismatches: 41, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
47 7 0.03
48 252 0.95
49 6 0.02
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGTGGCT
Found at i:69195698 original size:20 final size:18
Alignment explanation
Indices: 69195668--69195711 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
69195658 TTTGTAACGT
*
69195668 TTGTAAAATAAGTTGTAAA
1 TTGTGAAATAAGTTG-AAA
*
69195687 TGTGTGAAATAATTTGAAA
1 T-TGTGAAATAAGTTGAAA
69195706 TTGTGA
1 TTGTGA
69195712 GTTACTATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 5 0.23
19 5 0.23
20 12 0.55
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.39
Consensus pattern (18 bp):
TTGTGAAATAAGTTGAAA
Found at i:69196401 original size:46 final size:46
Alignment explanation
Indices: 69196345--69196511 Score: 171
Period size: 46 Copynumber: 3.6 Consensus size: 46
69196335 TATGTGTGCT
69196345 AGTGTAAGACATGTCTGGGACATGCATCGACCACATATTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACATATTGAGAGCC
* * * * *
69196391 AGAGTAAGACATGTTTGGGACATGCATCGACCTCGAAATAT-ACAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCAC-ATAT-TGA-GAGCC
* * ** *
69196439 AGTGTAAGACATGTCTGGG-CATGTATC-AGCAC-TGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACAT-A-TTGAGAGCC
69196484 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
69196512 AGTCTCGAGA
Statistics
Matches: 98, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
45 23 0.23
46 42 0.43
47 11 0.11
48 22 0.22
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCACATATTGAGAGCC
Found at i:69196452 original size:48 final size:47
Alignment explanation
Indices: 69196345--69196555 Score: 184
Period size: 48 Copynumber: 4.5 Consensus size: 47
69196335 TATGTGTGCT
* * *
69196345 AGTGTAAGACATGTCTGGGACATGCATC-GAC-C-ACATATTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATA-T-AAAGCC
* * *
69196391 AGAGTAAGACATGTTTGGGACATGCATC-GACCTCGAAATATACAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CCTCGAGATATA-AAGCC
* ** * *
69196439 AGTGTAAGACATGTCTGGG-CATGTATCAGCACT-GAGA-CGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGC-CTCGAGATATAAAGCC
* *
69196484 AGTGTAAGACATGTCTGGGACATGCATCAGTCTCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATA-AAGCC
* *
69196532 AGTGTAAGACCTATCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
69196556 GCACCGACAC
Statistics
Matches: 135, Mismatches: 20, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
45 24 0.18
46 41 0.30
47 14 0.10
48 52 0.39
49 4 0.03
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATAAAGCC
Found at i:69196505 original size:93 final size:94
Alignment explanation
Indices: 69196345--69196555 Score: 259
Period size: 93 Copynumber: 2.3 Consensus size: 94
69196335 TATGTGTGCT
** *
69196345 AGTGTAAGACATGTCTGGGACATGCATCGACCACATATTGAGAGCCAGAGTAAGACATGTTTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACATAACGAGAGCCAGAGTAAGACATGTCTGGG
69196410 ACATGCATC-GACCTCGAAATATACAAGCC
66 ACATGCATCAG-CCTCGAAATATACAAGCC
* * * *
69196439 AGTGTAAGACATGTCTGGG-CATGTATC-AGCAC-TGAGACGAGAGCTAGTGTAAGACATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACAT-A-ACGAGAGCCAGAGTAAGACATGTCTG
* * *
69196501 GGACATGCATCAGTCTCGAGATATACAAGCT
64 GGACATGCATCAGCCTCGAAATATACAAGCC
* *
69196532 AGTGTAAGACCTATCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
69196556 GCACCGACAC
Statistics
Matches: 101, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
91 1 0.01
92 5 0.05
93 71 0.70
94 24 0.24
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCACATAACGAGAGCCAGAGTAAGACATGTCTGGG
ACATGCATCAGCCTCGAAATATACAAGCC
Found at i:69224708 original size:48 final size:48
Alignment explanation
Indices: 69224635--69225014 Score: 383
Period size: 48 Copynumber: 7.9 Consensus size: 48
69224625 TTTAAAATAA
* *
69224635 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGAGG
* * * * * * *
69224683 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTC-ATTG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGA-GG
* * * * *
69224731 CCGATGCCATGTCCCAGAGATGGTCTTACACTAGCTCTCATAAT-GTGG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAT-ATCGAGG
* *
69224779 CCGATGCCATGTTTCAAACATGGTCTTACACTGGCTCTCATAAT-GTGG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAT-ATCGAGG
* * * * * * *
69224827 CTGATGCCATGTTCCAAACATTGTCTTACACTAGCGCACATATCAATG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGAGG
* * * * *
69224875 CCGATGCCATG-TCCTAGACATGGGCTTACACTGGCTCTCACAAC-ATCG
1 CCGATGCCATGTTCC-AAACATGGTCTTACACTGGCTCTCATATCGA-GG
* *
69224923 CCGATGTCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGAGG
* * *
69224971 TCGATGCCATGTTCCAAACATGGTCTTACACTGGCACACATATC
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATC
69225015 ACCCAAATGT
Statistics
Matches: 275, Mismatches: 49, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
47 7 0.03
48 264 0.96
49 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGAGG
Found at i:69224903 original size:144 final size:144
Alignment explanation
Indices: 69224635--69225015 Score: 523
Period size: 144 Copynumber: 2.6 Consensus size: 144
69224625 TTTAAAATAA
* * * * *
69224635 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCTGATGCCATGTCCCAG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCTGATGCCATGTTCCAA
* * * * * * *
69224700 ACATGGTCTTACACTAGCTCTCGTCTCATTGCCGATGCCATGTCCCAGAGATGGTCTTACACTAG
66 ACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGACATGGGCTTACACTAG
* ** *
69224765 CTCTCATAATGTGG
131 CTCTCACAACATCG
*
69224779 CCGATGCCATGTTTCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGCTGATGCCATGTTCCA
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAT-ATCGTGGCTGATGCCATGTTCCA
* * * *
69224843 AACATTGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCTAGACATGGGCTTACACTG
65 AACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGACATGGGCTTACACTA
69224908 GCTCTCACAACATCG
130 GCTCTCACAACATCG
*
69224923 CCGATGTCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGG-TCGATGCCATGTTCCA
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCT-GATGCCATGTTCCA
*
69224987 AACATGGTCTTACACTGGCACACATATCA
65 AACATGGTCTTACACTAGCACACATATCA
69225016 CCCAAATGTC
Statistics
Matches: 209, Mismatches: 25, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
143 3 0.01
144 205 0.98
145 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (144 bp):
CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCTGATGCCATGTTCCAA
ACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGACATGGGCTTACACTAG
CTCTCACAACATCG
Found at i:69227778 original size:18 final size:17
Alignment explanation
Indices: 69227738--69227779 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
69227728 ATCATTTCAT
69227738 TTCTTTATCTTTCTTTC
1 TTCTTTATCTTTCTTTC
*
69227755 TCTCTTTATCTTTGTATTC
1 T-TCTTTATCTTTCT-TTC
69227774 TTCTTT
1 TTCTTT
69227780 TAGTTTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 1 0.05
18 17 0.77
19 4 0.18
ACGTcount: A:0.07, C:0.21, G:0.02, T:0.69
Consensus pattern (17 bp):
TTCTTTATCTTTCTTTC
Found at i:69247455 original size:27 final size:26
Alignment explanation
Indices: 69247420--69247470 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
69247410 AGCATGCATA
* *
69247420 AAACATATCTTTAAAATCATAGTTTAT
1 AAACATATCTTGAAAA-CAGAGTTTAT
69247447 AAACATATCTTGAAAACAGAGTTT
1 AAACATATCTTGAAAACAGAGTTT
69247471 CAGAACTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.45, C:0.12, G:0.08, T:0.35
Consensus pattern (26 bp):
AAACATATCTTGAAAACAGAGTTTAT
Found at i:69248933 original size:19 final size:17
Alignment explanation
Indices: 69248892--69248935 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 17
69248882 ATCCTTGTCA
69248892 AAAAATAATTAAATATT
1 AAAAATAATTAAATATT
69248909 ATAAAATAATTAAATTATGT
1 A-AAAATAATTAAA-TAT-T
69248929 AAAAATA
1 AAAAATA
69248936 TGAACATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 1 0.04
18 12 0.50
19 9 0.38
20 2 0.08
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (17 bp):
AAAAATAATTAAATATT
Found at i:69265304 original size:39 final size:40
Alignment explanation
Indices: 69265261--69265367 Score: 144
Period size: 39 Copynumber: 2.7 Consensus size: 40
69265251 TCCTCGTTCA
* * * **
69265261 AATGCCTTCGGGACATAGCCTGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAACAACTCACACG
*
69265300 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAACAACTCACACG
*
69265340 AATGCCTTCGGGACTTAACCCGGATTTA
1 AATGCCTTCGGGACATAACCCGGATTTA
69265368 CTATCTCGCA
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
39 33 0.55
40 27 0.45
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAACAACTCACACG
Done.