Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 212 of 333
Found at i:69580938 original size:84 final size:84
Alignment explanation
Indices: 69580807--69581262 Score: 566
Period size: 84 Copynumber: 5.4 Consensus size: 84
69580797 CAATGCCAAC
* * * *
69580807 GTCCCAGACGTGGTCTTACATGTGATTACATATCGATGCC-ACTGTCCCAG--GTAGGGTCTTAC
1 GTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAAC-GTCCCAGACGT--GGTCTTAC
69580869 TCGAATCAAATATGATGCTGAT
63 TCGAATCAAATATGATGCTGAT
* * * * * *
69580891 GTCTCAGATATGGTCTTACATGTAATCACATATC-ATTTCCAACGTCCCAAACGTGGTCTTACAC
1 GTCCCAGACATGGTCTTACACGTAATCACATATCGA-TGCCAACGTCCCAGACGTGGTCTTACTC
*
69580955 GAATCAAATATAATGCTGAT
65 GAATCAAATATGATGCTGAT
* * *
69580975 GTCCCAGACATGGTCTTACACGTAATCACATATCGATGACAACGTCCTAGACGAT-ATCTTACAT
1 GTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACG-TGGTCTTAC-T
* **
69581039 -GAATCAAAAATGATGCCAAT
64 CGAATCAAATATGATGCTGAT
*
69581059 GTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAACGCCCCAGACGTGGTCTTACAT-
1 GTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACGTGGTCTTAC-TC
*
69581123 GAATCAAATACGATGCTGAT
65 GAATCAAATATGATGCTGAT
** * *
69581143 GTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAAAATCCTAGACGTGGTCTTACACG
1 GTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACTCG
* *
69581208 AATCAAATACGATGTTGAT
66 AATCAAATATGATGCTGAT
*
69581227 GTCCTAGACATGGTCTTACACGTAATCACATATCGA
1 GTCCCAGACATGGTCTTACACGTAATCACATATCGA
69581263 AAATCCTATG
Statistics
Matches: 326, Mismatches: 37, Indels: 18
0.86 0.10 0.05
Matches are distributed among these distances:
83 2 0.01
84 318 0.98
85 4 0.01
86 2 0.01
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (84 bp):
GTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACTCG
AATCAAATATGATGCTGAT
Found at i:69581244 original size:252 final size:251
Alignment explanation
Indices: 69580799--69581262 Score: 675
Period size: 252 Copynumber: 1.8 Consensus size: 251
69580789 ATATCATACA
* * * * *
69580799 ATGCCAACGTCCCAGACGTGGTCTTACATGTGATTACATATCGATGCCACTGTCCCAGGTAGGGT
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCACTGCCCCAGGTA-GGT
* * * * *
69580864 CTTACTCGAATCAAATATGATGCTGATGTCTCAGATATGGTCTTACATGTAATCACATATCATTT
65 CTTACTCGAATCAAATACGATGCTGATGTCCCAGACATGGTCTTACACGTAATCACATATCATTG
** *
69580929 CCAACGTCCCAAACGTGGTCTTACACGAATCAAATATAATGCTGATGTCCCAGACATGGTCTTAC
130 CCAAAATCCCAAACGTGGTCTTACACGAATCAAATACAATGCTGATGTCCCAGACATGGTCTTAC
69580994 ACGTAATCACATATCGATGACAACGTCCTAGACGATATCTTACATGAATCAAAAATG
195 ACGTAATCACATATCGATGACAACGTCCTAGACGATATCTTACATGAATCAAAAATG
*
69581051 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAAC-GCCCCAGACGT-G
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCC-ACTGCCCCAG--GTAG
69581114 GTCTTACAT-GAATCAAATACGATGCTGATGTCCCAGACATGGTCTTACACGTAATCACATATCG
63 GTCTTAC-TCGAATCAAATACGATGCTGATGTCCCAGACATGGTCTTACACGTAATCACATATC-
* * * * *
69581178 A-TGCCAAAATCCTAGACGTGGTCTTACACGAATCAAATACGATGTTGATGTCCTAGACATGGTC
126 ATTGCCAAAATCCCAAACGTGGTCTTACACGAATCAAATACAATGCTGATGTCCCAGACATGGTC
69581242 TTACACGTAATCACATATCGA
191 TTACACGTAATCACATATCGA
69581263 AAATCCTATG
Statistics
Matches: 188, Mismatches: 19, Indels: 10
0.87 0.09 0.05
Matches are distributed among these distances:
252 182 0.97
253 4 0.02
254 2 0.01
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (251 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCACTGCCCCAGGTAGGTC
TTACTCGAATCAAATACGATGCTGATGTCCCAGACATGGTCTTACACGTAATCACATATCATTGC
CAAAATCCCAAACGTGGTCTTACACGAATCAAATACAATGCTGATGTCCCAGACATGGTCTTACA
CGTAATCACATATCGATGACAACGTCCTAGACGATATCTTACATGAATCAAAAATG
Found at i:69583932 original size:28 final size:26
Alignment explanation
Indices: 69583900--69583965 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 26
69583890 TTGGAGGAAG
69583900 TACTGTATTAGTGGCTTTGCCACGTAAT
1 TACTGTATTAGTGGCTTTGCCACGT--T
* *
69583928 TACTGCT-CTGGTGGCTTTGCCACGTT
1 TACTG-TATTAGTGGCTTTGCCACGTT
69583954 TACTGTCATTAG
1 TACTGT-ATTAG
69583966 CAGCCTTGCT
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
25 1 0.03
26 6 0.19
27 2 0.06
28 21 0.68
29 1 0.03
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.39
Consensus pattern (26 bp):
TACTGTATTAGTGGCTTTGCCACGTT
Found at i:69599937 original size:44 final size:43
Alignment explanation
Indices: 69599843--69599952 Score: 123
Period size: 44 Copynumber: 2.5 Consensus size: 43
69599833 ACAATGCCGA
** * *
69599843 TGTCCCAGACGTGGTCTTACATGTAATTCAATATCGATGCCTC
1 TGTCCCAGACACGGTCTTACACGTAATTCAATATCGAGGCCTC
* * *
69599886 TGTCCCAGATAGGGTCTTACACGTAAATCTCAA-ATCGAGGCCTG
1 TGTCCCAGACACGGTCTTACACGT-AAT-TCAATATCGAGGCCTC
*
69599930 TGTCCCAGACACAGTCTTACACG
1 TGTCCCAGACACGGTCTTACACG
69599953 ATATTTCAGA
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
43 20 0.36
44 32 0.57
45 4 0.07
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (43 bp):
TGTCCCAGACACGGTCTTACACGTAATTCAATATCGAGGCCTC
Found at i:69603947 original size:12 final size:12
Alignment explanation
Indices: 69603930--69603955 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
69603920 ACCGAGTACT
69603930 AATTCAATGCCA
1 AATTCAATGCCA
69603942 AATTCAATGCCA
1 AATTCAATGCCA
69603954 AA
1 AA
69603956 CTCAGCTTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.23, G:0.08, T:0.23
Consensus pattern (12 bp):
AATTCAATGCCA
Found at i:69610950 original size:42 final size:43
Alignment explanation
Indices: 69610871--69610980 Score: 127
Period size: 42 Copynumber: 2.6 Consensus size: 43
69610861 CAATGTCGAC
* * * **
69610871 GTCCCAAACGTGGTCTTACATGTAATTCAGTATCGATGCCTCT
1 GTCCCAGACATGGTCTTACACGTAATTCAGTATCGATGCCGAT
*
69610914 GTCTCAGACA-GTGTCTTACACG-AATTCAG-ATACGATGCCGAT
1 GTCCCAGACATG-GTCTTACACGTAATTCAGTAT-CGATGCCGAT
69610956 GTCCCAGACATGGTCTTACACGTAA
1 GTCCCAGACATGGTCTTACACGTAA
69610981 ATCTCAAATC
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
41 2 0.04
42 35 0.62
43 19 0.34
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGTAATTCAGTATCGATGCCGAT
Found at i:69612624 original size:48 final size:48
Alignment explanation
Indices: 69612502--69612778 Score: 168
Period size: 48 Copynumber: 5.7 Consensus size: 48
69612492 ATGAGATCTT
* * * * *
69612502 ATGTAAGACCATGTCTGGGACATGGCATCGGCATCCGAGATGAGAGCCA
1 ATGTAAGACCATGTCTGAGATATGGCATCGGCAT-CAATATGAGTGCCA
* * * * * * * *
69612551 GTGTAAAACCATGTCTGGGAAATGGCATTGGCGTTAATATGTGTGCCA
1 ATGTAAGACCATGTCTGAGATATGGCATCGGCATCAATATGAGTGCCA
* ** **
69612599 ATGTAAGACCATGTCTGAGATATGGCATCGGCGTTGATATGTTTGCCA
1 ATGTAAGACCATGTCTGAGATATGGCATCGGCATCAATATGAGTGCCA
* * * * * *
69612647 GTGTAAGACTATAT-TTAGGATATGGCATCGGCATCAGTATGAGAT-CCC
1 ATGTAAGACCATGTCTGA-GATATGGCATCGGCATCAATATGAG-TGCCA
* * **
69612695 ATGTAAGACCATATCT-AGGATATGGCATTGGCATCGCTATGAG-GTCC-
1 ATGTAAGACCATGTCTGA-GATATGGCATCGGCATCAATATGAGTG-CCA
* * * *
69612742 ATTTACAAGACCATGTCTGGGACATGGCATCGACATC
1 ATGT--AAGACCATGTCTGAGATATGGCATCGGCATC
69612779 GACATGAGAC
Statistics
Matches: 181, Mismatches: 39, Indels: 16
0.77 0.17 0.07
Matches are distributed among these distances:
47 5 0.03
48 120 0.66
49 56 0.31
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (48 bp):
ATGTAAGACCATGTCTGAGATATGGCATCGGCATCAATATGAGTGCCA
Found at i:69620534 original size:48 final size:48
Alignment explanation
Indices: 69620425--69620644 Score: 237
Period size: 48 Copynumber: 4.6 Consensus size: 48
69620415 TGAGATCTCA
* * * * * * *
69620425 TGTAAAACCATGTCTGGGACATGGAATTGGCA-TCTGAGATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGG-AGT-TAATATGTGTGCCAG
* *
69620474 TGCAAGACCATGTCTGAGACATGGCATCGGAGTTAATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGAGTTAATATGTGTGCCAG
*
69620522 TGTAAGACCATGTTTGGGACATGGCATCGGCA-TTAATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGG-AGTTAATATGTGTGCCAG
* * * * *
69620570 TGTAAGACCATGTCTGGAACATGGCATCGGCGTTGATATGTGTACTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGAGTTAATATGTGTGCCAG
* * *
69620618 TGTAAGACTATATCTGGGATATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
69620645 TAGCATCAGT
Statistics
Matches: 146, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
48 119 0.82
49 27 0.18
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGAGTTAATATGTGTGCCAG
Found at i:69620594 original size:96 final size:97
Alignment explanation
Indices: 69620425--69620644 Score: 273
Period size: 96 Copynumber: 2.3 Consensus size: 97
69620415 TGAGATCTCA
* * * *
69620425 TGTAAAACCATGTCTGGGACATGGAATTGGCATCTGAGATGAGAGCCAGTGCAAGACCATGTCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCTAAGATGAGAGCCAGTGCAAGACCATGTCTG
*
69620490 AGACATGGCATCGGAGTTAATATGTGTGCCAG
66 AGACATGGCATCGGAGTTAATATGTGTACCAG
* * * * *
69620522 TGTAAGACCATGTTTGGGACATGGCATCGGCAT-TAATATGTGTGCCAGTGTAAGACCATGTCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCTAAGATGAGAGCCAGTGCAAGACCATGTCTG
* * *
69620586 -GAACATGGCATCGGCGTTGATATGTGTACTAG
66 AG-ACATGGCATCGGAGTTAATATGTGTACCAG
* * *
69620618 TGTAAGACTATATCTGGGATATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
69620645 TAGCATCAGT
Statistics
Matches: 105, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
95 1 0.01
96 75 0.71
97 29 0.28
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (97 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATCTAAGATGAGAGCCAGTGCAAGACCATGTCTG
AGACATGGCATCGGAGTTAATATGTGTACCAG
Found at i:69620690 original size:96 final size:95
Alignment explanation
Indices: 69620425--69620692 Score: 259
Period size: 96 Copynumber: 2.8 Consensus size: 95
69620415 TGAGATCTCA
* * * ** * * * *
69620425 TGTAAAACCATGTCTGGGACATGGAATTGGCATCTGAGATGAGAGCCAGTGCAAGACCATGTCTG
1 TGTAAGACCATATCTGGGACATGGCATCAGCATC-AATATGAGTGCCAGTGTAAGACCATGTCTG
*
69620490 AGACATGGCATCGGAGTTAATATGTGTGCCAG
65 -GACATGGCATCGGAGTTAATATGTGTACCAG
* * * * *
69620522 TGTAAGACCATGTTTGGGACATGGCATCGGCATTAATATGTGTGCCAGTGTAAGACCATGTCTGG
1 TGTAAGACCATATCTGGGACATGGCATCAGCATCAATATGAGTGCCAGTGTAAGACCATGTCTGG
* * *
69620587 AACATGGCATCGGCGTTGATATGTGTACTAG
66 -ACATGGCATCGGAGTTAATATGTGTACCAG
* * * * * *
69620618 TGTAAGACTATATCTGGGATATGGCATTAGCATCAGTATGAGATTCCA-TGTAAGACCATATCTA
1 TGTAAGACCATATCTGGGACATGGCATCAGCATCAATATGAG-TGCCAGTGTAAGACCATGTCT-
*
69620682 GGATATGGCAT
64 GGACATGGCAT
69620693 TGCCATCGCT
Statistics
Matches: 142, Mismatches: 26, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
95 1 0.01
96 106 0.75
97 35 0.25
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (95 bp):
TGTAAGACCATATCTGGGACATGGCATCAGCATCAATATGAGTGCCAGTGTAAGACCATGTCTGG
ACATGGCATCGGAGTTAATATGTGTACCAG
Found at i:69620718 original size:48 final size:48
Alignment explanation
Indices: 69620617--69620740 Score: 135
Period size: 48 Copynumber: 2.6 Consensus size: 48
69620607 ATGTGTACTA
* **
69620617 GTGTAAGACTATATCTGGGATATGGCATTAGCATCAGTATGAGATTCC
1 GTGTAAGACCATATCTGGGATATGGCATTAGCATCAGTATGAGAGCCC
* * *
69620665 ATGTAAGACCATATCTAGGATATGGCATT-GCCATC-GCTATGAGGGCCC
1 GTGTAAGACCATATCTGGGATATGGCATTAG-CATCAG-TATGAGAGCCC
* * *
69620713 GTGTAAGACCGTGTCTGGGACATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
69620741 CGGCACCGAC
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
47 2 0.03
48 61 0.97
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATATCTGGGATATGGCATTAGCATCAGTATGAGAGCCC
Found at i:69622714 original size:18 final size:18
Alignment explanation
Indices: 69622691--69622727 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
69622681 TTTTTTCGTG
*
69622691 TCACAATGTAATTTTTTT
1 TCACAATGCAATTTTTTT
69622709 TCACAATGCAATTTTTTT
1 TCACAATGCAATTTTTTT
69622727 T
1 T
69622728 TTACTTTGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.27, C:0.14, G:0.05, T:0.54
Consensus pattern (18 bp):
TCACAATGCAATTTTTTT
Found at i:69629717 original size:19 final size:19
Alignment explanation
Indices: 69629693--69629730 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
69629683 ATTTATAGAG
* *
69629693 ATGTGAATGAATTTTTGTT
1 ATGTGAATAAATATTTGTT
69629712 ATGTGAATAAATATTTGTT
1 ATGTGAATAAATATTTGTT
69629731 TGATGATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.18, T:0.50
Consensus pattern (19 bp):
ATGTGAATAAATATTTGTT
Found at i:69631272 original size:47 final size:47
Alignment explanation
Indices: 69631218--69631364 Score: 195
Period size: 47 Copynumber: 3.1 Consensus size: 47
69631208 TTAGGATTTT
** *
69631218 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * *
69631265 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * * * *
69631312 ATGTGGTGAATATGAACATGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
69631359 ATGTGA
1 ATGTGA
69631365 AATATGTATG
Statistics
Matches: 85, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 85 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:69631320 original size:25 final size:25
Alignment explanation
Indices: 69631247--69631320 Score: 59
Period size: 23 Copynumber: 3.1 Consensus size: 25
69631237 GTATATATGA
*
69631247 GATAAGGCCGAATGGCCAATGTGAT
1 GATAAGGCCGAATGGCCAATGTGGT
* * *
69631272 GA-ATGTG-AGCAT-G-CATATGT-GT
1 GATAAG-GCCGAATGGCCA-ATGTGGT
69631294 GATAAGGCCGAATGGCCAATGTGGT
1 GATAAGGCCGAATGGCCAATGTGGT
69631319 GA
1 GA
69631321 ATATGAACAT
Statistics
Matches: 35, Mismatches: 7, Indels: 14
0.62 0.12 0.25
Matches are distributed among these distances:
22 6 0.17
23 10 0.29
24 10 0.29
25 9 0.26
ACGTcount: A:0.30, C:0.14, G:0.34, T:0.23
Consensus pattern (25 bp):
GATAAGGCCGAATGGCCAATGTGGT
Found at i:69631397 original size:48 final size:48
Alignment explanation
Indices: 69631334--69631616 Score: 478
Period size: 48 Copynumber: 5.8 Consensus size: 48
69631324 TGAACATGTA
69631334 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
69631382 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
69631430 CATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
69631478 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
69631526 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-ATATGTATGAGATATG
*
69631578 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
69631617 GGCGATGTGC
Statistics
Matches: 222, Mismatches: 7, Indels: 12
0.92 0.03 0.05
Matches are distributed among these distances:
47 1 0.00
48 175 0.79
49 1 0.00
50 2 0.01
51 1 0.00
52 41 0.18
53 1 0.00
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:69631871 original size:37 final size:37
Alignment explanation
Indices: 69631763--69631871 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
69631753 GGAAATATAT
*
69631763 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
69631800 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
69631837 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
69631872 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:69633152 original size:15 final size:15
Alignment explanation
Indices: 69633132--69633183 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
69633122 ACAACAAAAA
69633132 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
69633147 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
69633166 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
69633181 ATT
1 ATT
69633184 AATTTTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:69633240 original size:16 final size:16
Alignment explanation
Indices: 69633216--69633252 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
69633206 ATGTGAATAA
69633216 TATTATTTAAATTTAT
1 TATTATTTAAATTTAT
*
69633232 TATTTTTTAAATTTAT
1 TATTATTTAAATTTAT
69633248 TATTA
1 TATTA
69633253 AAATAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TATTATTTAAATTTAT
Found at i:69633302 original size:22 final size:22
Alignment explanation
Indices: 69633276--69633319 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
69633266 ATATTAAATA
69633276 ATTTATTAAAATAATAATTTAT
1 ATTTATTAAAATAATAATTTAT
* *
69633298 ATTTATTATATTAATAATTTAT
1 ATTTATTAAAATAATAATTTAT
69633320 TATAAGACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
ATTTATTAAAATAATAATTTAT
Found at i:69633305 original size:34 final size:33
Alignment explanation
Indices: 69633224--69633305 Score: 80
Period size: 31 Copynumber: 2.5 Consensus size: 33
69633214 AATATTATTT
* *
69633224 AAATTTATTATTTTTTAAATTTATTATTAAAATA
1 AAATTTA-TATTTATTAAATATATTATTAAAATA
* *
69633258 AAATTGA-A-ATATTAAATA-ATTTATTAAAATA
1 AAATTTATATTTATTAAATATA-TTATTAAAATA
69633289 ATAATTTATATTTATTA
1 A-AATTTATATTTATTA
69633306 TATTAATAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
30 1 0.03
31 19 0.50
32 6 0.16
33 1 0.03
34 11 0.29
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (33 bp):
AAATTTATATTTATTAAATATATTATTAAAATA
Found at i:69639523 original size:90 final size:90
Alignment explanation
Indices: 69639395--69639623 Score: 381
Period size: 90 Copynumber: 2.6 Consensus size: 90
69639385 TATGGATTAA
* *
69639395 ATTAAATTTACAGATA-CAAAAAATACAAACATTCTAAGAAATTAATACATGAAAATATAAAAAT
1 ATTAAATTTACAGATATAAAAAAATACAAACATTCTAAGAAATTAATACACGAAAATATAAAAAT
*
69639459 GAGACCTTAAATCCTAAACAACTAT
66 GAGACCTTAAATCCTAAACAACTAC
69639484 ATTAAATTTACAGATATAAAAAAATACAAACATTCTAAGAAATTAATACACGAAAATATAAAAAT
1 ATTAAATTTACAGATATAAAAAAATACAAACATTCTAAGAAATTAATACACGAAAATATAAAAAT
*
69639549 GATACCTTAAATCCTAAACAACTAC
66 GAGACCTTAAATCCTAAACAACTAC
* *
69639574 ATTAAATTTACAGGTATAAAAAAATACAAACATTTTAATGAAA-TAATACA
1 ATTAAATTTACAGATATAAAAAAATACAAACATTCTAA-GAAATTAATACA
69639624 ATTATTTTGA
Statistics
Matches: 132, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
89 16 0.12
90 112 0.85
91 4 0.03
ACGTcount: A:0.55, C:0.13, G:0.05, T:0.27
Consensus pattern (90 bp):
ATTAAATTTACAGATATAAAAAAATACAAACATTCTAAGAAATTAATACACGAAAATATAAAAAT
GAGACCTTAAATCCTAAACAACTAC
Found at i:69641906 original size:56 final size:56
Alignment explanation
Indices: 69641798--69642040 Score: 266
Period size: 56 Copynumber: 4.4 Consensus size: 56
69641788 TTACTGCTCG
** * *
69641798 CATGCTGTCACAAATTGAATTAAAGCTGTTGTTTTGATTGTTTCAAATTGAGCATTTT
1 CATGCTGTCTTAAATTGAATT-AAGCTGCTGTTTT-AGTGTTTCAAATTGAGCATTTT
* * *
69641856 CATACTGTCTTAAATTGAATCAAGCTGCTGTTTTAGTGTTTCAAAGTGAGCATTTT
1 CATGCTGTCTTAAATTGAATTAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATTTT
* * * *
69641912 CATGCTGTCATAAATTGAATTAA-----AG-TTTAGTGTATCAAATTTAGCATTTT
1 CATGCTGTCTTAAATTGAATTAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATTTT
* * *
69641962 CATGCTGTCTTAAATTAAATTAAGCTGCTGTTTTAATGTTTCAAATTGAGTATTATT
1 CATGCTGTCTTAAATTGAATTAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATT-TT
* *
69642019 -ATGCTGTCCTAAATTAAATTAA
1 CATGCTGTCTTAAATTGAATTAA
69642041 AGTGTTGCTT
Statistics
Matches: 156, Mismatches: 22, Indels: 16
0.80 0.11 0.08
Matches are distributed among these distances:
50 43 0.28
51 1 0.01
55 1 0.01
56 80 0.51
57 14 0.09
58 17 0.11
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.42
Consensus pattern (56 bp):
CATGCTGTCTTAAATTGAATTAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATTTT
Found at i:69641962 original size:50 final size:50
Alignment explanation
Indices: 69641887--69641984 Score: 151
Period size: 50 Copynumber: 2.0 Consensus size: 50
69641877 AAGCTGCTGT
* *
69641887 TTTAGTGTTTCAAAGTGAGCATTTTCATGCTGTCATAAATTGAATTAAAG
1 TTTAGTGTATCAAAGTGAGCATTTTCATGCTGTCATAAATTAAATTAAAG
* * *
69641937 TTTAGTGTATCAAATTTAGCATTTTCATGCTGTCTTAAATTAAATTAA
1 TTTAGTGTATCAAAGTGAGCATTTTCATGCTGTCATAAATTAAATTAA
69641985 GCTGCTGTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (50 bp):
TTTAGTGTATCAAAGTGAGCATTTTCATGCTGTCATAAATTAAATTAAAG
Found at i:69642025 original size:106 final size:106
Alignment explanation
Indices: 69641840--69642043 Score: 311
Period size: 106 Copynumber: 1.9 Consensus size: 106
69641830 TTTGATTGTT
* *
69641840 TCAAATTGAGCATTTTCATACTGTCTTAAATTGAATCAAGCTGCTGTTTTAGTGTTTCAAAGTGA
1 TCAAATTGAGCATTTTCATACTGTCTTAAATTAAATCAAGCTGCTGTTTTAATGTTTCAAAGTGA
*
69641905 GCATTTTCATGCTGTCATAAATTGAATTAAAGTTTAGTGTA
66 GCATTTTCATGCTGTCATAAATTAAATTAAAGTTTAGTGTA
* * * *
69641946 TCAAATTTAGCATTTTCATGCTGTCTTAAATTAAATTAAGCTGCTGTTTTAATGTTTCAAATTGA
1 TCAAATTGAGCATTTTCATACTGTCTTAAATTAAATCAAGCTGCTGTTTTAATGTTTCAAAGTGA
* *
69642011 GTATTATT-ATGCTGTCCTAAATTAAATTAAAGT
66 GCATT-TTCATGCTGTCATAAATTAAATTAAAGT
69642044 GTTGCTTCAA
Statistics
Matches: 88, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
106 86 0.98
107 2 0.02
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.42
Consensus pattern (106 bp):
TCAAATTGAGCATTTTCATACTGTCTTAAATTAAATCAAGCTGCTGTTTTAATGTTTCAAAGTGA
GCATTTTCATGCTGTCATAAATTAAATTAAAGTTTAGTGTA
Found at i:69642056 original size:56 final size:57
Alignment explanation
Indices: 69641946--69642079 Score: 150
Period size: 56 Copynumber: 2.4 Consensus size: 57
69641936 GTTTAGTGTA
* * * *
69641946 TCAAATTTAGCATT-TTCATGCTGTCTTAAATTAAATTAAGCTGCTGTTTTAATGT-T
1 TCAAATTAAGCATTATT-ATGCTGTCCTAAATTAAATTAAGCTGCTGCTTCAATGTCT
* * *
69642002 TCAAATTGAGTATTATTATGCTGTCCTAAATTAAATTAAAG-TGTTGCTTCAATGTCT
1 TCAAATTAAGCATTATTATGCTGTCCTAAATTAAATT-AAGCTGCTGCTTCAATGTCT
*
69642059 T-AAAGTAAGCATTATTATGCT
1 TCAAATTAAGCATTATTATGCT
69642080 ATTGAAAAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
56 59 0.89
57 7 0.11
ACGTcount: A:0.31, C:0.12, G:0.13, T:0.43
Consensus pattern (57 bp):
TCAAATTAAGCATTATTATGCTGTCCTAAATTAAATTAAGCTGCTGCTTCAATGTCT
Found at i:69643930 original size:15 final size:16
Alignment explanation
Indices: 69643910--69643942 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
69643900 ATATATTTTT
69643910 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
69643925 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
69643942 T
1 T
69643943 ATAACCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:69650656 original size:27 final size:27
Alignment explanation
Indices: 69650625--69650802 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
69650615 TAAATTGTAC
69650625 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
69650652 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
69650678 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
69650706 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
69650734 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
69650761 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
69650788 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
69650803 GACTCGATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:69650739 original size:82 final size:81
Alignment explanation
Indices: 69650626--69650781 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
69650616 AAATTGTACA
*
69650626 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
69650690 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
69650707 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
69650772 TGCGAGTTGA
65 TGCGAATTGA
69650782 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:69650793 original size:82 final size:81
Alignment explanation
Indices: 69650622--69650802 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
69650612 GATTAAATTG
*
69650622 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
69650687 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
69650703 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
69650767 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
69650785 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
69650803 GACTCGATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:69669490 original size:16 final size:16
Alignment explanation
Indices: 69669469--69669525 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
69669459 TTTGGTTCGC
*
69669469 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
*
69669485 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
*
69669501 TGTAATGGAATAGAGG
1 TGTAATGGATTAGAGG
69669517 TGTAATGGA
1 TGTAATGGA
69669526 AAAGCTGTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.30, C:0.00, G:0.37, T:0.33
Consensus pattern (16 bp):
TGTAATGGATTAGAGG
Found at i:69669792 original size:18 final size:17
Alignment explanation
Indices: 69669771--69669805 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
69669761 TTATTATTAA
*
69669771 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
69669789 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
69669806 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:69669942 original size:16 final size:16
Alignment explanation
Indices: 69669905--69669946 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
69669895 TTAATCATAT
*
69669905 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
69669921 TT-AAATATATTATAA
1 TTAAAATATATTATAA
69669936 TTAAAATATAT
1 TTAAAATATAT
69669947 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:69669944 original size:154 final size:156
Alignment explanation
Indices: 69669658--69669971 Score: 569
Period size: 154 Copynumber: 2.0 Consensus size: 156
69669648 TAGAATACCC
69669658 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTA-TA
*
69669723 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
65 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
*
69669788 TATATAATTTAATAAAATTCTTAATAA
130 TATATAATTTAATAAAATTCTTAAAAA
* *
69669815 TTAGCATAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTA-A-
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATAT
69669878 TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
66 TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
69669943 ATATAATTTAATAAAATTCTTAAAAA
131 ATATAATTTAATAAAATTCTTAAAAA
69669969 TTA
1 TTA
69669972 ATATTCTTAT
Statistics
Matches: 153, Mismatches: 4, Indels: 3
0.96 0.03 0.02
Matches are distributed among these distances:
154 92 0.60
155 1 0.01
157 60 0.39
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (156 bp):
TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATAT
TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
ATATAATTTAATAAAATTCTTAAAAA
Found at i:69669953 original size:14 final size:15
Alignment explanation
Indices: 69669914--69669955 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
69669904 TTTAAACATA
*
69669914 ATTATTATTAAATAT
1 ATTATAATTAAATAT
69669929 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
69669943 A-TATAATTTAATA
1 ATTATAATTAAATA
69669956 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:69670042 original size:120 final size:121
Alignment explanation
Indices: 69669903--69670199 Score: 462
Period size: 120 Copynumber: 2.5 Consensus size: 121
69669893 ATTTAATCAT
*
69669903 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAA-A
1 ATTTCAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
* * *
69669967 AATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAA
66 AA-TAAAATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AA
69670025 A-TT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTCAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
*
69670088 AATAAAATTCTTCTATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAA
66 AATAAAATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAA
* *
69670144 ATTTCAA-ATAATTAATATTAAATATGATT-TAATT-AAATATATGATTTAATAAAATT
1 ATTTCAACATAATTATTATTAAATAT-ATTATAATTAAAATATATAATTTAATAAAATT
69670200 TAAAATTATT
Statistics
Matches: 165, Mismatches: 6, Indels: 11
0.91 0.03 0.06
Matches are distributed among these distances:
119 24 0.15
120 130 0.79
121 10 0.06
122 1 0.01
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (121 bp):
ATTTCAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
AATAAAATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAA
Found at i:69670073 original size:14 final size:15
Alignment explanation
Indices: 69670024--69670075 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
69670014 GTAAAATATA
69670024 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
69670039 TATTAAATATATTAT
1 AATTAAATATATTAT
69670054 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
69670067 AATTTAATA
1 AATTAAATA
69670076 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:69670090 original size:44 final size:43
Alignment explanation
Indices: 69670001--69670091 Score: 103
Period size: 44 Copynumber: 2.1 Consensus size: 43
69669991 CTCAAATCAT
* * *
69670001 AATATATGATACTGTAAAATATAAATTAACATAATTATTATTA
1 AATATATGATAATGTAAAATATAAATTAACAAAATTATTAATA
* * *
69670044 AATATATTATAAT-TAAAATATATAATTTAATAAAATTCTTAATA
1 AATATATGATAATGTAAAATATA-AA-TTAACAAAATTATTAATA
69670088 AATA
1 AATA
69670092 AAATTCTTCT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
42 9 0.22
43 13 0.32
44 18 0.45
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (43 bp):
AATATATGATAATGTAAAATATAAATTAACAAAATTATTAATA
Found at i:69670126 original size:59 final size:59
Alignment explanation
Indices: 69669943--69670126 Score: 148
Period size: 59 Copynumber: 3.1 Consensus size: 59
69669933 TAATTAAAAT
69669943 ATATAATTTAATAAAATTCTTAA-AAATTAATATTCTTATATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAAA-TAATATTCTTATATGAATTTACTCAAATCATA
* * * * * * * *
69670002 ATAT-ATGATACTGTAAAA-TATAAATTAACATAATTATTATTAAAT-ATATTATAATTAAA--A
1 ATATAAT-TTA--ATAAAATTCTTAA-TAA-ATAA-TATTCTTATATGA-ATT-TACTCAAATCA
69670062 T-
58 TA
* *
69670063 ATATAATTTAATAAAATTCTTAATAAATAAAATTCTTCTATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAAATAATATTCTTATATGAATTTACTCAAATCATA
69670122 ATATA
1 ATATA
69670127 TGATACTATA
Statistics
Matches: 92, Mismatches: 18, Indels: 30
0.66 0.13 0.21
Matches are distributed among these distances:
56 6 0.07
57 10 0.11
58 9 0.10
59 19 0.21
60 8 0.09
61 11 0.12
62 10 0.11
63 13 0.14
64 6 0.07
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (59 bp):
ATATAATTTAATAAAATTCTTAATAAATAATATTCTTATATGAATTTACTCAAATCATA
Found at i:69670180 original size:15 final size:15
Alignment explanation
Indices: 69670160--69670198 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
69670150 AATAATTAAT
69670160 ATTAAATATGATTTA
1 ATTAAATATGATTTA
69670175 ATTAAATATATGATTTA
1 ATT-AA-ATATGATTTA
*
69670192 ATAAAAT
1 ATTAAAT
69670199 TTAAAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 5 0.24
16 4 0.19
17 12 0.57
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (15 bp):
ATTAAATATGATTTA
Found at i:69670185 original size:17 final size:17
Alignment explanation
Indices: 69670165--69670198 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
69670155 TTAATATTAA
*
69670165 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
69670182 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
69670199 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:69670311 original size:92 final size:92
Alignment explanation
Indices: 69670231--69670424 Score: 277
Period size: 92 Copynumber: 2.1 Consensus size: 92
69670221 GATTATAGTT
* * *
69670231 TATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATT-TAATAATAATATATAATTTC
1 TATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTAT-ATAATAATATATAATTTC
* *
69670294 ATAAAATTCTTGATAATAAAATTTTCTTA
64 ATAAAATTCTTAATAATAAAATTTACTTA
* *
69670323 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAGTGATATATAATTTCAT
1 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
69670388 AAAATTCTTAATAATAAAATGTT-CTTA
66 AAAATTCTTAATAATAAAAT-TTACTTA
69670415 TATGAATTTA
1 TATGAATTTA
69670425 CTAAAATCAA
Statistics
Matches: 93, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
92 87 0.94
93 6 0.06
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (92 bp):
TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
AAAATTCTTAATAATAAAATTTACTTA
Found at i:69672843 original size:12 final size:12
Alignment explanation
Indices: 69672826--69672853 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
69672816 CATACAAAAA
69672826 ACAGAAGCTGCT
1 ACAGAAGCTGCT
69672838 ACAGAAGCTGCT
1 ACAGAAGCTGCT
69672850 ACAG
1 ACAG
69672854 CAATAACCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.25, G:0.25, T:0.14
Consensus pattern (12 bp):
ACAGAAGCTGCT
Found at i:69674331 original size:24 final size:24
Alignment explanation
Indices: 69674304--69674354 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
69674294 TGGGAAAAAC
69674304 ATTGGCAGATTAATTTAGGTCAGA
1 ATTGGCAGATTAATTTAGGTCAGA
69674328 ATTGGCAGATTAATTTAGGTCAGA
1 ATTGGCAGATTAATTTAGGTCAGA
69674352 ATT
1 ATT
69674355 TAAAACTCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.35
Consensus pattern (24 bp):
ATTGGCAGATTAATTTAGGTCAGA
Found at i:69674913 original size:17 final size:18
Alignment explanation
Indices: 69674893--69674934 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
69674883 TAACCAACTA
69674893 ACTAA-AAAAGAAAAT-AT
1 ACTAATAAAA-AAAATAAT
*
69674910 ACTAATAATAAAAATAAT
1 ACTAATAAAAAAAATAAT
69674928 ACTAATA
1 ACTAATA
69674935 GTAAACCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.67, C:0.07, G:0.02, T:0.24
Consensus pattern (18 bp):
ACTAATAAAAAAAATAAT
Found at i:69674931 original size:18 final size:17
Alignment explanation
Indices: 69674903--69674939 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
69674893 ACTAAAAAAG
69674903 AAAATATACTAATAATA
1 AAAATATACTAATAATA
*
69674920 AAAATAATACTAATAGTA
1 AAAAT-ATACTAATAATA
69674938 AA
1 AA
69674940 CCACTTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.27
Consensus pattern (17 bp):
AAAATATACTAATAATA
Found at i:69675112 original size:28 final size:29
Alignment explanation
Indices: 69675045--69675123 Score: 92
Period size: 28 Copynumber: 2.8 Consensus size: 29
69675035 AACTAAAAAC
69675045 TAATAATAATCAA-AAC-AATAACAGCATAT
1 TAATAATAAT-AACAACAAATAACA-CATAT
* *
69675074 TAATAAGAATAACAACAAATAATA-ATAT
1 TAATAATAATAACAACAAATAACACATAT
*
69675102 TAATAATAATAACAATAAATAA
1 TAATAATAATAACAACAAATAA
69675124 ATAAATAAAG
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
28 26 0.59
29 12 0.27
30 6 0.14
ACGTcount: A:0.63, C:0.09, G:0.03, T:0.25
Consensus pattern (29 bp):
TAATAATAATAACAACAAATAACACATAT
Found at i:69679512 original size:12 final size:11
Alignment explanation
Indices: 69679490--69679520 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
69679480 AATTTTTTTA
69679490 TAAACTAAAAT
1 TAAACTAAAAT
69679501 TAAACTATAAAT
1 TAAACTA-AAAT
69679513 TAAACTAA
1 TAAACTAA
69679521 CTAAGCTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.61, C:0.10, G:0.00, T:0.29
Consensus pattern (11 bp):
TAAACTAAAAT
Found at i:69690530 original size:24 final size:24
Alignment explanation
Indices: 69690515--69690566 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
69690505 AATCAAAGTC
69690515 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATGCT
* * *
69690539 AAATATATTATACTCATAAATACT
1 AAATATATTATGCTAATAAATGCT
69690563 AAAT
1 AAAT
69690567 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATGCT
Found at i:69694515 original size:24 final size:24
Alignment explanation
Indices: 69694452--69694503 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
69694442 TTTCTAGAAG
* * *
69694452 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
69694476 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
69694500 ATTT
1 ATTT
69694504 GACTTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:69705037 original size:16 final size:15
Alignment explanation
Indices: 69705016--69705077 Score: 51
Period size: 14 Copynumber: 4.1 Consensus size: 15
69705006 AGAAACTAGT
69705016 AAATAGAAATGAAGAA
1 AAATAG-AATGAAGAA
69705032 AAATAG-ATGAA-AA
1 AAATAGAATGAAGAA
*
69705045 GAGAATAGTGATGAAGAA
1 -A-AATAG-AATGAAGAA
69705063 AAATAG-ATGAA-AA
1 AAATAGAATGAAGAA
69705076 AA
1 AA
69705078 GTTGAGAAAG
Statistics
Matches: 41, Mismatches: 0, Indels: 13
0.76 0.00 0.24
Matches are distributed among these distances:
13 6 0.15
14 11 0.27
15 5 0.12
16 11 0.27
17 6 0.15
18 2 0.05
ACGTcount: A:0.65, C:0.00, G:0.21, T:0.15
Consensus pattern (15 bp):
AAATAGAATGAAGAA
Found at i:69705041 original size:14 final size:13
Alignment explanation
Indices: 69705024--69705077 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 13
69705014 GTAAATAGAA
69705024 ATGAAGAAAAATAG
1 ATGAA-AAAAATAG
69705038 ATGAAAAGAGAATAGTG
1 ATGAAAA-A-AATA--G
69705055 ATGAAGAAAAATAG
1 ATGAA-AAAAATAG
69705069 ATGAAAAAA
1 ATGAAAAAA
69705078 GTTGAGAAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
13 6 0.17
14 12 0.34
15 4 0.11
16 4 0.11
17 7 0.20
18 2 0.06
ACGTcount: A:0.63, C:0.00, G:0.22, T:0.15
Consensus pattern (13 bp):
ATGAAAAAAATAG
Found at i:69705052 original size:31 final size:31
Alignment explanation
Indices: 69705017--69705075 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
69705007 GAAACTAGTA
69705017 AATAGAAATGAAGAAAAATAGATGAAAAGAG
1 AATAGAAATGAAGAAAAATAGATGAAAAGAG
**
69705048 AATAGTGATGAAGAAAAATAGATGAAAA
1 AATAGAAATGAAGAAAAATAGATGAAAA
69705076 AAGTTGAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.63, C:0.00, G:0.22, T:0.15
Consensus pattern (31 bp):
AATAGAAATGAAGAAAAATAGATGAAAAGAG
Found at i:69715807 original size:28 final size:28
Alignment explanation
Indices: 69715767--69715866 Score: 96
Period size: 28 Copynumber: 3.6 Consensus size: 28
69715757 TGCATGACTG
*
69715767 TGAAAGTGATTGGGCCTGACGGGCCATA
1 TGAAAGTGATTGGGCCTGAAGGGCCATA
* *
69715795 TGAAAGTGATTGGGCCT-AATGGCTATA
1 TGAAAGTGATTGGGCCTGAAGGGCCATA
* * * *
69715822 CGAATGTGGTTGGG-CTCGATGGGCCATA
1 TGAAAGTGATTGGGCCT-GAAGGGCCATA
* *
69715850 TGAACGAGATTGGGCCT
1 TGAAAGTGATTGGGCCT
69715867 ATAGGGGCCA
Statistics
Matches: 56, Mismatches: 13, Indels: 5
0.76 0.18 0.07
Matches are distributed among these distances:
26 2 0.04
27 18 0.32
28 34 0.61
29 2 0.04
ACGTcount: A:0.24, C:0.16, G:0.35, T:0.25
Consensus pattern (28 bp):
TGAAAGTGATTGGGCCTGAAGGGCCATA
Found at i:69716514 original size:24 final size:25
Alignment explanation
Indices: 69716480--69716526 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
69716470 ACTCCCCGCA
*
69716480 GGAGTGTAGGGTTGGA-TGGGATAC
1 GGAGTGCAGGGTTGGATTGGGATAC
69716504 GGAGTGCAGGGTTGGATTGGGAT
1 GGAGTGCAGGGTTGGATTGGGAT
69716527 TTCTGCATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.19, C:0.04, G:0.51, T:0.26
Consensus pattern (25 bp):
GGAGTGCAGGGTTGGATTGGGATAC
Found at i:69723480 original size:16 final size:16
Alignment explanation
Indices: 69723459--69723495 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
69723449 AATTGAGTAA
69723459 GTATGGGAAGAACCAG
1 GTATGGGAAGAACCAG
69723475 GTATGGGAAGAACCAG
1 GTATGGGAAGAACCAG
*
69723491 ATATG
1 GTATG
69723496 TATGATACCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.38, C:0.11, G:0.35, T:0.16
Consensus pattern (16 bp):
GTATGGGAAGAACCAG
Found at i:69726997 original size:43 final size:42
Alignment explanation
Indices: 69726839--69726997 Score: 119
Period size: 43 Copynumber: 3.7 Consensus size: 42
69726829 TGTGATTTCG
* *
69726839 TGTAAGACCACGT-TGGGAATGTTGACATTGATTTGAGATTTACG
1 TGTAAGACCACGTCTGGG-ATGTTGACATTGATTT-TGA-TTACA
* ** * * *
69726883 TGTAAGACCATGTCTGGGACATCGACATCG-TATTTGATTTCA
1 TGTAAGACCACGTCTGGGATGTTGACATTGAT-TTTGATTACA
* * * *
69726925 TGTAAGATCC-TGTCTAGGACAG-TGGCATTGATGTTTGATTACA
1 TGTAAGA-CCACGTCTGGGA-TGTTGACATTGAT-TTTGATTACA
69726968 TGTAAGACCACGTCTGGGATGTTGACATTG
1 TGTAAGACCACGTCTGGGATGTTGACATTG
69726998 TACGAGCTTT
Statistics
Matches: 88, Mismatches: 20, Indels: 15
0.72 0.16 0.12
Matches are distributed among these distances:
42 26 0.30
43 36 0.41
44 22 0.25
45 4 0.05
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGATGTTGACATTGATTTTGATTACA
Found at i:69735077 original size:42 final size:41
Alignment explanation
Indices: 69734990--69735152 Score: 161
Period size: 42 Copynumber: 3.9 Consensus size: 41
69734980 TACCGTACCA
* * * *
69734990 ATGCCATATCCCAGATATGGTCTTACATGTAA-TCTCGTATTG
1 ATGCCATAACCCA-ATATGGTCTTACACG-AAGTCTCATATAG
* *
69735032 ATGCCAATAGCCCAACTATGGTCTTACACG-AGTCTCATATCG
1 ATGCC-ATAACCCAA-TATGGTCTTACACGAAGTCTCATATAG
*
69735074 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATAG
1 ATGCCATAACCCA-ATATGGTCTTACACGAAGTCTCATATAG
**
69735116 ATTTCATAACCCAAATATGGTCTTACACGTAA-TCTCA
1 ATGCCATAACCC-AATATGGTCTTACACG-AAGTCTCA
69735153 ATAACCCTAA
Statistics
Matches: 105, Mismatches: 9, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
41 22 0.21
42 60 0.57
43 23 0.22
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.31
Consensus pattern (41 bp):
ATGCCATAACCCAATATGGTCTTACACGAAGTCTCATATAG
Found at i:69735152 original size:84 final size:84
Alignment explanation
Indices: 69734990--69735152 Score: 222
Period size: 84 Copynumber: 1.9 Consensus size: 84
69734980 TACCGTACCA
* * * * *
69734990 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATTGATGCCAATAGCCCAACTATGGTC
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATAGATGCCAATAACCCAAATATGGTC
*
69735055 TTACACGAGTCTCATATCG
66 TTACACGAATCTCATATCG
**
69735074 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCATATAGATTTC-ATAACCCAAATATGGT
1 ATGCCATATCCCAGATATGGTCTTACACGTAA-TCTCATATAGATGCCAATAACCCAAATATGGT
69735137 CTTACACGTAATCTCA
65 CTTACACG-AATCTCA
69735153 ATAACCCTAA
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
83 24 0.35
84 45 0.65
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.31
Consensus pattern (84 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATAGATGCCAATAACCCAAATATGGTC
TTACACGAATCTCATATCG
Found at i:69748906 original size:49 final size:50
Alignment explanation
Indices: 69748824--69749068 Score: 291
Period size: 50 Copynumber: 4.9 Consensus size: 50
69748814 ATCTATTGTG
* *
69748824 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * *
69748874 -GGTCGCATGTGTAGTACTAAGTGCAGGATACTATGCGTACCCA-ATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGATAA-TT
* * * * **
69748924 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * *
69748974 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * *
69749024 -GGTCGCATGTGTA-TACTAAGTGTAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
69749069 GCGTTGTTTA
Statistics
Matches: 165, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
48 28 0.17
49 50 0.30
50 51 0.31
51 36 0.22
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:69755958 original size:27 final size:27
Alignment explanation
Indices: 69755899--69755964 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
69755889 ACCCTAATAT
* * *
69755899 TGGTAAAATTATCGAAATACCCTTGTA
1 TGGTAAAATGACCGAAATACCCCTGTA
*
69755926 -GTGTAAAATGACCGTAATACCCCTGTA
1 TG-GTAAAATGACCGAAATACCCCTGTA
*
69755953 TGGTAAACTGAC
1 TGGTAAAATGAC
69755965 GATTATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
26 1 0.03
27 30 0.94
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (27 bp):
TGGTAAAATGACCGAAATACCCCTGTA
Found at i:69756218 original size:22 final size:22
Alignment explanation
Indices: 69756193--69756237 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
69756183 TGTTAAGATA
*
69756193 TCTACGGCGTTGAGCCGTCCTG
1 TCTACGGCGTTGACCCGTCCTG
*
69756215 TCTATGGCGTTGACCCGTCCTG
1 TCTACGGCGTTGACCCGTCCTG
69756237 T
1 T
69756238 TGACTTAGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.09, C:0.31, G:0.29, T:0.31
Consensus pattern (22 bp):
TCTACGGCGTTGACCCGTCCTG
Found at i:69781085 original size:12 final size:13
Alignment explanation
Indices: 69781068--69781096 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
69781058 AGATGGACAA
69781068 AATTTGGC-TTTT
1 AATTTGGCTTTTT
69781080 AATTTGGCTTTTT
1 AATTTGGCTTTTT
69781093 AATT
1 AATT
69781097 CATTTAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.21, C:0.07, G:0.14, T:0.59
Consensus pattern (13 bp):
AATTTGGCTTTTT
Found at i:69783364 original size:49 final size:50
Alignment explanation
Indices: 69783282--69783527 Score: 300
Period size: 49 Copynumber: 4.9 Consensus size: 50
69783272 ATCTATTGTG
* *
69783282 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * *
69783332 -GGTCGCATGTGTAGTACTAAGTGCAGGATACTATGCGTACCCA-ATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGATAA-TT
* * * * **
69783382 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * *
69783432 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * *
69783482 -GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
69783528 GCGTTGTTTA
Statistics
Matches: 166, Mismatches: 26, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
49 79 0.48
50 51 0.31
51 36 0.22
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:69790510 original size:27 final size:27
Alignment explanation
Indices: 69790451--69790516 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
69790441 ACCCTAATAT
* * *
69790451 TGGTAAAATTATCGAAATACCCTTGTA
1 TGGTAAAATGACCGAAATACCCCTGTA
*
69790478 -GTGTAAAATGACCGTAATACCCCTGTA
1 TG-GTAAAATGACCGAAATACCCCTGTA
*
69790505 TGGTAAACTGAC
1 TGGTAAAATGAC
69790517 GATTATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
26 1 0.03
27 30 0.94
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (27 bp):
TGGTAAAATGACCGAAATACCCCTGTA
Found at i:69790772 original size:22 final size:22
Alignment explanation
Indices: 69790747--69790791 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
69790737 TGTTAAGATA
*
69790747 TCTACGGCGTTGAGCCGTCCTG
1 TCTACGGCGTTGACCCGTCCTG
*
69790769 TCTATGGCGTTGACCCGTCCTG
1 TCTACGGCGTTGACCCGTCCTG
69790791 T
1 T
69790792 TGACTTAGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.09, C:0.31, G:0.29, T:0.31
Consensus pattern (22 bp):
TCTACGGCGTTGACCCGTCCTG
Found at i:69797252 original size:18 final size:18
Alignment explanation
Indices: 69797205--69797257 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
69797195 GGCCCATTCT
* * *
69797205 AGTAACAGTAAACAGAGT
1 AGTAACAGTAATCAGTGC
69797223 AGTAACAGTAATCAGTGC
1 AGTAACAGTAATCAGTGC
69797241 AGTAACAGTAATCAGTG
1 AGTAACAGTAATCAGTG
69797258 TGCAAGTCCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.21
Consensus pattern (18 bp):
AGTAACAGTAATCAGTGC
Found at i:69797611 original size:27 final size:27
Alignment explanation
Indices: 69797576--69798057 Score: 556
Period size: 27 Copynumber: 18.0 Consensus size: 27
69797566 AAACATACAT
*
69797576 CACATAAGGGCAAAATAGTCATCTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
69797603 CATATAAGGGAAAAATAGTAATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
69797630 CACATAAGGGCAAAACAGTCTTTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
69797657 CATATAAGGGCAAAATAGTAATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
69797684 CACATAAGGGAAAAATAGTAATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
69797711 CACATAAGGGAAAAATAGTAATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
*
69797738 CACATGAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * * *
69797765 CATATAAGGGCAACATAGTTATTCTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
69797792 CACATAAGGGAAAAATAGTCAGTCTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
*
69797819 CACATAAGGGCAAAACA---ATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
69797843 CACATAAGGGAAAAATAGTCAGTCTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
69797870 CACATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
69797897 CTCATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
69797924 CTCATAAGGGCAAAATAGTAATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
69797951 CCCATAAGGGTAAAACAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
69797978 CCCATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
69798005 CCCATAAAGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * * *
69798032 CCCACAAGGGCAAAACAATCATTTTA
1 CACATAAGGGCAAAATAGTCATTTTA
69798058 TCAATTAAAG
Statistics
Matches: 398, Mismatches: 54, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
24 20 0.05
27 378 0.95
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.24
Consensus pattern (27 bp):
CACATAAGGGCAAAATAGTCATTTTAC
Found at i:69811754 original size:34 final size:34
Alignment explanation
Indices: 69811688--69811776 Score: 101
Period size: 34 Copynumber: 2.6 Consensus size: 34
69811678 TCATACTATA
*
69811688 CTGAAATGGGCTAAGGCCCAGACTGCCTCTGTTAT
1 CTGAAATGGGCTAAGGCCCAGACTGCATCTGTT-T
*
69811723 -TGAAATGGGCTAAGGCCCAGATTG-ATACTGTTT
1 CTGAAATGGGCTAAGGCCCAGACTGCAT-CTGTTT
*
69811756 CTGGAAAAGGGGCTAAGGCCC
1 CT-G-AAATGGGCTAAGGCCC
69811777 TAACTGGAAC
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
33 2 0.04
34 29 0.62
35 1 0.02
36 15 0.32
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (34 bp):
CTGAAATGGGCTAAGGCCCAGACTGCATCTGTTT
Found at i:69818373 original size:23 final size:23
Alignment explanation
Indices: 69818334--69818388 Score: 92
Period size: 23 Copynumber: 2.3 Consensus size: 23
69818324 TTTGGCCTCC
69818334 TTCTCTAGGTTCAATTTCTGGTAA
1 TTCT-TAGGTTCAATTTCTGGTAA
*
69818358 TTCTTAGGTTCGATTTCTGGTAA
1 TTCTTAGGTTCAATTTCTGGTAA
69818381 TTCTTAGG
1 TTCTTAGG
69818389 CCAAAAGGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 26 0.87
24 4 0.13
ACGTcount: A:0.18, C:0.15, G:0.20, T:0.47
Consensus pattern (23 bp):
TTCTTAGGTTCAATTTCTGGTAA
Found at i:69819643 original size:34 final size:34
Alignment explanation
Indices: 69819578--69819643 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
69819568 CATACTGTAT
***
69819578 TGAAATGGGCTAAGGCCTAGACTGCCTCTGTTAC
1 TGAAATGGGCTAAGGCCTAGACTGAAACTGTTAC
* *
69819612 TGAAATGGGTTCAGGCCTAGACTGAAACTGTT
1 TGAAATGGGCTAAGGCCTAGACTGAAACTGTT
69819644 TCTCGAAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (34 bp):
TGAAATGGGCTAAGGCCTAGACTGAAACTGTTAC
Found at i:69822670 original size:13 final size:13
Alignment explanation
Indices: 69822652--69822678 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
69822642 GAAGTAATCA
69822652 CACACGGGCGTGT
1 CACACGGGCGTGT
69822665 CACACGGGCGTGT
1 CACACGGGCGTGT
69822678 C
1 C
69822679 CCTACCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:69830450 original size:43 final size:42
Alignment explanation
Indices: 69830279--69830438 Score: 182
Period size: 43 Copynumber: 3.8 Consensus size: 42
69830269 ATATATCGTA
* * *
69830279 CAATGCCAACGTCCCAGACGTGGTCTTACATGCTATCTCATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACG-AATCACATAT
* * *
69830322 CAATGTC-ACTATCCCAGACAG-GGTCTTACACGAATCAAATA-
1 CAATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAATCACATAT
* * *
69830363 CGATGCCGATGTCCCAGACGTGGTCTTACACGTAATCACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACG-AATCACATAT
69830406 CAATGCCAACGTCCCAGACGTGGTCTTACACGA
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGA
69830439 CAACGCATAT
Statistics
Matches: 97, Mismatches: 14, Indels: 13
0.78 0.11 0.10
Matches are distributed among these distances:
40 1 0.01
41 24 0.25
42 18 0.19
43 53 0.55
44 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (42 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACACGAATCACATAT
Found at i:69841185 original size:14 final size:15
Alignment explanation
Indices: 69841168--69841196 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
69841158 TCATGAAAAT
69841168 TTCACACAT-ATAAA
1 TTCACACATAATAAA
69841182 TTCACACATAATAAA
1 TTCACACATAATAAA
69841197 GACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:69846567 original size:48 final size:48
Alignment explanation
Indices: 69846485--69846842 Score: 185
Period size: 48 Copynumber: 7.7 Consensus size: 48
69846475 CCATGGTTAG
* * * * * * * *
69846485 TGAGATCCCATGTAAGACCATGTCCGAGTCATGGCATCGGCATCAGGA
1 TGAGATCCCGTATAAGACCATATCTGGGACATGGCATCAGCATCAGTA
* * * *
69846533 TGTGATCCCGTATAAGACCATATCAGGGATATGGCTTCAGCATC-GTTA
1 TGAGATCCCGTATAAGACCATATCTGGGACATGGCATCAGCATCAG-TA
* * ** * * *
69846581 AGCGATTTCATA-ATAGACTATATCTGGGACATGACATC-G-AT-A--A
1 TGAGATCCCGTATA-AGACCATATCTGGGACATGGCATCAGCATCAGTA
* * *
69846624 -GAGATCCCGTATAAGA-CATGTCTGGGACATGGCATCGGTATCAGTA
1 TGAGATCCCGTATAAGACCATATCTGGGACATGGCATCAGCATCAGTA
* * ** * * *
69846670 TGGGATCCCATGCAAGACCATATCTGGGATATGGCATTAGCATCGAG-G
1 TGAGATCCCGTATAAGACCATATCTGGGACATGGCATCAGCATC-AGTA
* * * * *
69846718 TGAGGTCCCGTATAAGACCATGTTTGGGACATGGCATCAGTA-CTAATA
1 TGAGATCCCGTATAAGACCATATCTGGGACATGGCATCAGCATC-AGTA
* * *
69846766 TGAGA-CTTCGTATAAGACCATATCTGGGATATGGCATC-G-AT-A-TG
1 TGAGATC-CCGTATAAGACCATATCTGGGACATGGCATCAGCATCAGTA
* * *
69846810 TG-G-TCCCATGTAAGACCATGTCTGGGACATGGC
1 TGAGATCCCGTATAAGACCATATCTGGGACATGGC
69846843 TTTGGCACTC
Statistics
Matches: 232, Mismatches: 62, Indels: 38
0.70 0.19 0.11
Matches are distributed among these distances:
41 17 0.07
42 34 0.15
43 6 0.03
44 4 0.02
45 1 0.00
46 4 0.02
47 19 0.08
48 145 0.62
49 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (48 bp):
TGAGATCCCGTATAAGACCATATCTGGGACATGGCATCAGCATCAGTA
Found at i:69846836 original size:90 final size:89
Alignment explanation
Indices: 69846595--69846842 Score: 250
Period size: 96 Copynumber: 2.7 Consensus size: 89
69846585 ATTTCATAAT
* * * * *
69846595 AGACTATATCTGGGACATGACATCGATAAGAGATCCCGTATAAGA-CATGTCTGGGACATGGCAT
1 AGACCATATCTGGGATATGGCATCGATATGAGGTCCCGTATAAGACCATGTCTGGGACATGGCAT
* * *
69846659 CGGTATCAGTATGGGATCCCATGCA
66 CAGTATCAATATGAGATCCCAT-CA
* *
69846684 AGACCATATCTGGGATATGGCATTAGCATCGAGGTGAGGTCCCGTATAAGACCATGTTTGGGACA
1 AGACCATATCTGGGATATGGCA-TCG-AT--A--TGAGGTCCCGTATAAGACCATGTCTGGGACA
**
69846749 TGGCATCAGTA-CTAATATGAGACTTCGTAT-A
60 TGGCATCAGTATC-AATATGAGA--TCCCATCA
* * *
69846780 AGACCATATCTGGGATATGGCATCGATATGTGGTCCCATGTAAGACCATGTCTGGGACATGGC
1 AGACCATATCTGGGATATGGCATCGATATGAGGTCCCGTATAAGACCATGTCTGGGACATGGC
69846843 TTTGGCACTC
Statistics
Matches: 132, Mismatches: 17, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
89 19 0.14
90 33 0.25
91 2 0.02
92 1 0.01
93 1 0.01
94 2 0.02
95 18 0.14
96 52 0.39
98 4 0.03
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (89 bp):
AGACCATATCTGGGATATGGCATCGATATGAGGTCCCGTATAAGACCATGTCTGGGACATGGCAT
CAGTATCAATATGAGATCCCATCA
Found at i:69849365 original size:41 final size:41
Alignment explanation
Indices: 69849312--69849481 Score: 140
Period size: 41 Copynumber: 4.1 Consensus size: 41
69849302 AGTCCGACTC
* *
69849312 TTAG-CACCGGCTC-AAGAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAAGCCCTTCGAGACCAAGCTCGGA
* * *
69849351 TTAGACTACTGGCTC-GAAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * *
69849391 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC-AAAAAGCCCTTCGAGACCAAGCTCGG--A
69849436 TTAG-CACTGGCTC-AAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAAGCCCTTCGAGACCAAGCTCGGA
69849475 TTCAGAC
1 TT-AGAC
69849482 CCCGATTAGC
Statistics
Matches: 106, Mismatches: 11, Indels: 26
0.74 0.08 0.18
Matches are distributed among these distances:
39 7 0.07
40 16 0.15
41 50 0.47
42 19 0.18
43 10 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (41 bp):
TTAGACACTGGCTCAAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:69849419 original size:42 final size:41
Alignment explanation
Indices: 69849314--69849461 Score: 142
Period size: 41 Copynumber: 3.6 Consensus size: 41
69849304 TCCGACTCTT
* * * *
69849314 AGCACCGGCTCAAGAGCCCTTCGAGACCAAG-CTCGGATTA-G
1 AGCACTGGCTCAAAAGCCCTTCGAAACTAAGTC-CGG-TTATG
* * *
69849355 A-CTACTGGCTCGAAGGCCCTTCGGAACTAAGTCCGGTTATG
1 AGC-ACTGGCTCAAAAGCCCTTCGAAACTAAGTCCGGTTATG
* *
69849396 A-CACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTATT
1 AGCACTGGCTC--AAAAGCCCTTCGAAACTAAGTCCGGTTATG
69849438 AGCACTGGCTCAAAAGCCCTTCGA
1 AGCACTGGCTCAAAAGCCCTTCGA
69849462 GACCAAGCTC
Statistics
Matches: 89, Mismatches: 12, Indels: 12
0.79 0.11 0.11
Matches are distributed among these distances:
40 12 0.13
41 41 0.46
42 27 0.30
43 9 0.10
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (41 bp):
AGCACTGGCTCAAAAGCCCTTCGAAACTAAGTCCGGTTATG
Found at i:69858125 original size:47 final size:48
Alignment explanation
Indices: 69858056--69858186 Score: 176
Period size: 47 Copynumber: 2.8 Consensus size: 48
69858046 CTCAATCGAT
* *
69858056 AAGTACCTATACCATGGCCCGTAGCCAAATGAAGGTAACTTATC-CCA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCCA
* * **
69858103 AAGTACCTATACCATTGCCCGTAGCCAAATCAAGGTAACTCCTCTCTG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCCA
* *
69858151 AA-TACCTATACCATGGCCCATAGCTAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
69858187 TTATTCGCAC
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 71 0.96
48 3 0.04
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCCA
Found at i:69862835 original size:40 final size:40
Alignment explanation
Indices: 69862791--69862973 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
69862781 GCCACTAGCT
* * * *
69862791 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
69862831 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
*
69862870 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
* * *
69862910 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
*
69862950 CGAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
69862974 AAATTAGCCA
Statistics
Matches: 134, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 37 0.28
40 97 0.72
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
Found at i:69862891 original size:79 final size:80
Alignment explanation
Indices: 69862791--69862973 Score: 278
Period size: 79 Copynumber: 2.3 Consensus size: 80
69862781 GCCACTAGCT
* * * * *
69862791 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
69862856 -TATAATAACTCGCA
66 ATATAATAACTCGCA
*
69862870 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
* *
69862935 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
*
69862950 CGAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
69862974 AAATTAGCCA
Statistics
Matches: 94, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 59 0.63
80 35 0.37
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:69862996 original size:40 final size:38
Alignment explanation
Indices: 69862791--69863011 Score: 194
Period size: 40 Copynumber: 5.6 Consensus size: 38
69862781 GCCACTAGCT
* ** *
69862791 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAT-TAG-AACTCGCA
* * *
69862831 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GAATTAGAACTCGCA
*
69862870 CAAATGCCTTCGGGACTTAGCCCGGATATA-ATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAT-TAGA-A-CTCGCA
* * *
69862910 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAT-TAG-AACTCGCA
* * * *
69862950 CGAATGCCTTCGGGACTTAGCCCGAAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCG-AATTAG-AACTCGCA
69862990 CAAATG-CTCTCGGGACTTAGCC
1 CAAATGCCT-TCGGGACTTAGCC
69863012 TGGTTATCAT
Statistics
Matches: 154, Mismatches: 19, Indels: 16
0.81 0.10 0.08
Matches are distributed among these distances:
38 4 0.03
39 34 0.22
40 111 0.72
41 4 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (38 bp):
CAAATGCCTTCGGGACTTAGCCCGAATTAGAACTCGCA
Found at i:69870909 original size:40 final size:40
Alignment explanation
Indices: 69870842--69871088 Score: 295
Period size: 40 Copynumber: 6.2 Consensus size: 40
69870832 CCTTCGGAGT
** * *
69870842 TTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
69870881 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
69870921 TTAGCCC-GATATAATAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * * *
69870960 TTAGCCCAGATATAATAGCTCGCACAAACGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
69871000 TTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
** * *
69871040 TTAGCCCGGA-ATTAGCCACTAGCTCAAATG-CTCTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCT-TCGGGAC
69871080 TTAGCCCGG
1 TTAGCCCGG
69871089 TTATCATCCG
Statistics
Matches: 184, Mismatches: 20, Indels: 7
0.87 0.09 0.03
Matches are distributed among these distances:
39 43 0.23
40 141 0.77
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:69877726 original size:17 final size:18
Alignment explanation
Indices: 69877699--69877732 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
69877689 CTCATACAAA
69877699 ATTTTTCAAAAATTAAAC
1 ATTTTTCAAAAATTAAAC
*
69877717 ATTTTT-AAAAGTTAAA
1 ATTTTTCAAAAATTAAA
69877733 GAGGTTACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (18 bp):
ATTTTTCAAAAATTAAAC
Found at i:69879087 original size:42 final size:43
Alignment explanation
Indices: 69878977--69879092 Score: 128
Period size: 43 Copynumber: 2.7 Consensus size: 43
69878967 AAAGCTCAGA
* *
69878977 CAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATAT
1 CAATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATAT
** * * *
69879020 CAATGCCATTGTTCCAGATAGGGTCTTACACG-AACTCAAATA-
1 CAATGCCAACGTCCCAGACATGGTCTTACACGTAA-TCAAATAT
* *
69879062 CGATGCCAACGTCCCAAACATGGTCTTACAC
1 CAATGCCAACGTCCCAGACATGGTCTTACAC
69879093 ACAAAACATA
Statistics
Matches: 58, Mismatches: 14, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
42 26 0.45
43 32 0.55
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATAT
Found at i:69885004 original size:26 final size:26
Alignment explanation
Indices: 69884975--69885036 Score: 124
Period size: 26 Copynumber: 2.4 Consensus size: 26
69884965 AATATTTTTA
69884975 AAGGTTAAAAATGTAATTAAGTAAAT
1 AAGGTTAAAAATGTAATTAAGTAAAT
69885001 AAGGTTAAAAATGTAATTAAGTAAAT
1 AAGGTTAAAAATGTAATTAAGTAAAT
69885027 AAGGTTAAAA
1 AAGGTTAAAA
69885037 TAATAAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.55, C:0.00, G:0.16, T:0.29
Consensus pattern (26 bp):
AAGGTTAAAAATGTAATTAAGTAAAT
Found at i:69885788 original size:15 final size:15
Alignment explanation
Indices: 69885756--69885784 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
69885746 ATTTTATGTG
69885756 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
69885771 TTTATT-TGTGTGAA
1 TTTATTATGTGTGAA
69885785 ATTTTCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:69887238 original size:40 final size:40
Alignment explanation
Indices: 69887183--69887262 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
69887173 GAGCTAAAAT
69887183 GATCAGGAATGAATTAGCTTATTTCCTACTTGAAATAAGG
1 GATCAGGAATGAATTAGCTTATTTCCTACTTGAAATAAGG
* *
69887223 GATCAGGTATGAATTAGTTTATTTCCTACTTGAAATAAGG
1 GATCAGGAATGAATTAGCTTATTTCCTACTTGAAATAAGG
69887263 TAAGTAAGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.35
Consensus pattern (40 bp):
GATCAGGAATGAATTAGCTTATTTCCTACTTGAAATAAGG
Found at i:69901653 original size:48 final size:48
Alignment explanation
Indices: 69901437--69901665 Score: 150
Period size: 48 Copynumber: 4.9 Consensus size: 48
69901427 AGGTAGGGTC
* * *
69901437 CCAATGCCATATCCCAGATATGGTCTTACATGGGACCACATAACGAT-
1 CCAATGCCATGTCCCAGATATGGTCTTACATAGGATCACATAACGATA
* * * *
69901484 GCAATTCCATGTCCCAGACATGGTCTTACATGGGATCAC---AC-ATA
1 CCAATGCCATGTCCCAGATATGGTCTTACATAGGATCACATAACGATA
* * * * * * * *
69901528 TCGAA-GCCGATAG-CCCAGCTATGGTCTTACACGATG-TCTCATTATGATG
1 -CCAATGCC-AT-GTCCCAGATATGGTCTTACA-TAGGATCACATAACGATA
*** * * *
69901577 CCAATGCCATGTCTTGGACATGGCCTTACATAAGATCACATAACGATA
1 CCAATGCCATGTCCCAGATATGGTCTTACATAGGATCACATAACGATA
* * *
69901625 CCAAAGCCATGTCCCAGATATGGTCTTACATGGGATAACAT
1 CCAATGCCATGTCCCAGATATGGTCTTACATAGGATCACAT
69901666 GTCACTGCCG
Statistics
Matches: 132, Mismatches: 38, Indels: 23
0.68 0.20 0.12
Matches are distributed among these distances:
43 2 0.02
44 4 0.03
45 23 0.17
46 2 0.02
47 37 0.28
48 59 0.45
49 5 0.04
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (48 bp):
CCAATGCCATGTCCCAGATATGGTCTTACATAGGATCACATAACGATA
Found at i:69908092 original size:107 final size:106
Alignment explanation
Indices: 69907901--69908094 Score: 239
Period size: 107 Copynumber: 1.8 Consensus size: 106
69907891 AATGTAAAAC
* * * * *
69907901 CATAGCTGGGCTATGGCATTTTAGTGAAAGACCATAACTAGGTTATGGCACCATGTACGTAAGAC
1 CATAGCTGGGCTATGGCATCTGAGAGAAAGACCATAACTAGGTAATGGCACCACGTACGTAAGAC
**
69907966 CATGGTTGGACCATAGCAATATATATAAAACTGTGTAAGAG
66 CATGGCAGGACCATAGCAATATATATAAAACTGTGTAAGAG
* * *
69908007 CATAGCTGGGCTATGGCATCCTGA-AGATAAGACCATAACTGGGTAATGGCACTACG-AGTGTAA
1 CATAGCTGGGCTATGGCAT-CTGAGAGA-AAGACCATAACTAGGTAATGGCACCACGTA-CGTAA
* *
69908070 GACCATGGCAGGGCCATGGCAATAT
63 GACCATGGCAGGACCATAGCAATAT
69908095 TTGTGTGAGA
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
106 22 0.30
107 51 0.70
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (106 bp):
CATAGCTGGGCTATGGCATCTGAGAGAAAGACCATAACTAGGTAATGGCACCACGTACGTAAGAC
CATGGCAGGACCATAGCAATATATATAAAACTGTGTAAGAG
Found at i:69924290 original size:43 final size:43
Alignment explanation
Indices: 69924221--69924379 Score: 173
Period size: 43 Copynumber: 3.7 Consensus size: 43
69924211 AGCTCGTACA
*
69924221 ATGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCAAATATTG
1 ATGCCAACGTCCCAGACAG-GGTCTTACATGTAATCAAATATCG
* *
69924264 ATG-CAACTGTCCCAGACAGGGTCTTACATGAAATCATATA-CG
1 ATGCCAAC-GTCCCAGACAGGGTCTTACATGTAATCAAATATCG
* * * *
69924306 ATGCCAATGTCCTAGACATGGTCTTGCATGTAAATCACAA-ATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACATGT-AATCA-AATATCG
* *
69924350 ATGCCAACATCCCAGACATGGTCTTACATG
1 ATGCCAACGTCCCAGACAGGGTCTTACATG
69924380 ATAACACATA
Statistics
Matches: 97, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
42 27 0.28
43 40 0.41
44 30 0.31
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACATGTAATCAAATATCG
Found at i:69924373 original size:86 final size:85
Alignment explanation
Indices: 69924221--69924380 Score: 216
Period size: 86 Copynumber: 1.9 Consensus size: 85
69924211 AGCTCGTACA
* * *
69924221 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATTGATGCAACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCAACTATCCCAGACAGGGT
69924286 CTTACATGAAATCATATACG
66 CTTACATGAAATCATATACG
* * * *
69924306 ATGCCAATGTCCTAGACATGGTCTTGCATGTAAATCACAA-ATCGATGCCAAC-ATCCCAGACAT
1 ATGCCAACGTCCCAGACATGGTCTTACATGT-AATCA-AATATCGATG-CAACTATCCCAGACAG
69924369 GGTCTTACATGA
63 GGTCTTACATGA
69924381 TAACACATAT
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
85 27 0.42
86 32 0.49
87 6 0.09
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (85 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCAACTATCCCAGACAGGGT
CTTACATGAAATCATATACG
Found at i:69928473 original size:23 final size:23
Alignment explanation
Indices: 69928348--69928482 Score: 98
Period size: 23 Copynumber: 5.8 Consensus size: 23
69928338 AAGGGATATA
* * *
69928348 TATATATGGTTGTGTTTGGATGG
1 TATATTTGGTTATGTTTGGAAGG
* * *
69928371 TATACTTGGTTGTGTTCGG-AGG
1 TATATTTGGTTATGTTTGGAAGG
* *
69928393 TTATATATAAGGTTATGTTTGGAGGG
1 -TATAT-T-TGGTTATGTTTGGAAGG
69928419 TATATTTGG-T-TGTATT-GAAGGG
1 TATATTTGGTTATGT-TTGGAA-GG
* *
69928441 TATGTTTGGTTATGTTTGGAAGA
1 TATATTTGGTTATGTTTGGAAGG
*
69928464 TATTTTTGGTTATGTTTGG
1 TATATTTGGTTATGTTTGG
69928483 TGGGTGATAG
Statistics
Matches: 89, Mismatches: 14, Indels: 18
0.74 0.12 0.15
Matches are distributed among these distances:
21 5 0.06
22 15 0.17
23 44 0.49
24 8 0.09
25 15 0.17
26 2 0.02
ACGTcount: A:0.19, C:0.01, G:0.32, T:0.47
Consensus pattern (23 bp):
TATATTTGGTTATGTTTGGAAGG
Found at i:69936212 original size:7 final size:7
Alignment explanation
Indices: 69936200--69936230 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
69936190 CATAACTTTC
69936200 ATTTTTA
1 ATTTTTA
69936207 ATTTTTA
1 ATTTTTA
69936214 ATTTTTA
1 ATTTTTA
69936221 ATTTTTA
1 ATTTTTA
69936228 ATT
1 ATT
69936231 AAATTGTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
ATTTTTA
Found at i:69938791 original size:22 final size:21
Alignment explanation
Indices: 69938766--69938818 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 21
69938756 GAAATTGGTT
69938766 ATATATATTGCACTTAT-ATATA
1 ATATATATTG--CTTATAATATA
69938788 ATATAT-TGTGCTTATAGATATA
1 ATATATAT-TGCTTATA-ATATA
69938810 ATATATATT
1 ATATATATT
69938819 ATTAGATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
20 5 0.19
21 1 0.04
22 20 0.74
23 1 0.04
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.47
Consensus pattern (21 bp):
ATATATATTGCTTATAATATA
Found at i:69938793 original size:20 final size:21
Alignment explanation
Indices: 69938768--69938815 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
69938758 AATTGGTTAT
69938768 ATATATTGCACTTAT-ATATA
1 ATATATTGCACTTATAATATA
**
69938788 ATATATTGTGCTTATAGATATA
1 ATATATTGCACTTATA-ATATA
69938810 ATATAT
1 ATATAT
69938816 ATTATTAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 13 0.54
22 11 0.46
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.46
Consensus pattern (21 bp):
ATATATTGCACTTATAATATA
Found at i:69940703 original size:17 final size:17
Alignment explanation
Indices: 69940678--69940710 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
69940668 GGATAGAAAT
*
69940678 AAATTAATAATGAAAAG
1 AAATAAATAATGAAAAG
69940695 AAATAAATAATGAAAA
1 AAATAAATAATGAAAA
69940711 AACAAACGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (17 bp):
AAATAAATAATGAAAAG
Found at i:69942441 original size:48 final size:48
Alignment explanation
Indices: 69942366--69942545 Score: 140
Period size: 48 Copynumber: 3.8 Consensus size: 48
69942356 CACATAATAG
* * * *
69942366 GATGCCAATGATATATCCTAGATATGGTCTTACATGGGATCAAATATC
1 GATGCCAATGACATGTCCCAGACATGGTCTTACATGGGATCAAATATC
*
69942414 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCATACATATC
1 GATGCCAATGACATGTCCCAGACATGGTCTTACATGGGATCA-A-ATATC
* * * ** *
69942464 GAAGCC---GACA-G-CCCAG-CTATGGTCTTACACGATG-TCTCATATT
1 GATGCCAATGACATGTCCCAGAC-ATGGTCTTACATG-GGATCAAATATC
* * * *
69942507 GATGCCAATGCCATGTCCTAGACATGGACATACATGGGA
1 GATGCCAATGACATGTCCCAGACATGGTCTTACATGGGA
69942546 CCACACATAT
Statistics
Matches: 102, Mismatches: 19, Indels: 22
0.71 0.13 0.15
Matches are distributed among these distances:
43 9 0.09
44 1 0.01
45 19 0.19
46 5 0.05
47 5 0.05
48 51 0.50
49 2 0.02
50 10 0.10
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.26
Consensus pattern (48 bp):
GATGCCAATGACATGTCCCAGACATGGTCTTACATGGGATCAAATATC
Found at i:69946628 original size:373 final size:373
Alignment explanation
Indices: 69946137--69947257 Score: 2188
Period size: 373 Copynumber: 3.0 Consensus size: 373
69946127 AAGAGAAATA
* *
69946137 GATAAATTTAAAAGTTCAGTTGAATTAATATTTTGAGATGAAAAATCTATATAAGGCTAAGAAAA
1 GATAAATTTAAAAGTTCAGTTGAATTAATATTTTGAGATGAAAAATCTATGTGAGGCTAAGAAAA
69946202 TACTCAGCATGGAGATACATAAAGACAAAAAGAAAGGCACGCTTTGTTTGGCTTGAAAGCAATAT
66 TACTCAGCATGGAGATACATAAAGACAAAAAGAAAGGCACGCTTTGTTTGGCTTGAAAGCAATAT
69946267 ATGAGAAAAATAATACAATGCTTTGGTCTGAACGAAAATAAAAAAAACATGTAAGTACCCCATTT
131 ATGAGAAAAATAATACAATGCTTTGGTCTGAACGAAAATAAAAAAAACATGTAAGTACCCCATTT
69946332 TATTTTTAGTTGAAACTTTGTTCTCAATTGTCTTCCAAAAGTGATGAAAAATGAGAATTTATGGC
196 TATTTTTAGTTGAAACTTTGTTCTCAATTGTCTTCCAAAAGTGATGAAAAATGAGAATTTATGGC
69946397 AAAGGTTTCATATGCTAATGTAGTTGGGAGTTTGATGTACGTGATGGTGCATACACAACTAGACA
261 AAAGGTTTCATATGCTAATGTAGTTGGGAGTTTGATGTACGTGATGGTGCATACACAACTAGACA
69946462 TTTCATAAGCAAGTAGAGTTATGAGGTGTATGCATAATCCTAGTAAAG
326 TTTCATAAGCAAGTAGAGTTATGAGGTGTATGCATAATCCTAGTAAAG
69946510 GATAAATTTAAAAGTTCAGTTGAATTAATATTTTGAGATGAAAAATCTATGTGAGGCTAAGAAAA
1 GATAAATTTAAAAGTTCAGTTGAATTAATATTTTGAGATGAAAAATCTATGTGAGGCTAAGAAAA
69946575 TACTCAGCATGGAGATACATAAAGACAAAAAGAAAGGCACGCTTTGTTTGGCTTGAAAGCAATAT
66 TACTCAGCATGGAGATACATAAAGACAAAAAGAAAGGCACGCTTTGTTTGGCTTGAAAGCAATAT
*
69946640 ATGAGAAAAATAATACAATGCTTTGGTCTGAACGAAAATATAAAAAACATGTAAGTACCCCATTT
131 ATGAGAAAAATAATACAATGCTTTGGTCTGAACGAAAATAAAAAAAACATGTAAGTACCCCATTT
69946705 TATTTTTAGTTGAAACTTTGTTCTCAATTGTCTTCCAAAAGTGATGAAAAATGAGAATTTATGGC
196 TATTTTTAGTTGAAACTTTGTTCTCAATTGTCTTCCAAAAGTGATGAAAAATGAGAATTTATGGC
69946770 AAAGGTTTCATATGCTAATGTAGTTGGGAGTTTGATGTACGTGATGGTGCATACACAACTAGACA
261 AAAGGTTTCATATGCTAATGTAGTTGGGAGTTTGATGTACGTGATGGTGCATACACAACTAGACA
69946835 TTTCATAAGCAAGTAGAGTTATGAGGTGTATGCATAATCCTAGTAAAG
326 TTTCATAAGCAAGTAGAGTTATGAGGTGTATGCATAATCCTAGTAAAG
69946883 GATAAATTTAAAAGTTCAGTTGAATTAATATTTTGAGATGAAAAATCTATGTGAGGCTAAGAAAA
1 GATAAATTTAAAAGTTCAGTTGAATTAATATTTTGAGATGAAAAATCTATGTGAGGCTAAGAAAA
69946948 TACTCAGCATGGAGATACATAAAGACAAAAAGAAAGGCACGCTTTGTTTGGCTTGAAAGCAATAT
66 TACTCAGCATGGAGATACATAAAGACAAAAAGAAAGGCACGCTTTGTTTGGCTTGAAAGCAATAT
*
69947013 ATGAGAAAAATAATACAATGCTTTGGTCTGAACAAAAATAAAAAAAACATGTAAGTACCCCATTT
131 ATGAGAAAAATAATACAATGCTTTGGTCTGAACGAAAATAAAAAAAACATGTAAGTACCCCATTT
*
69947078 TATTTTTAGTTGAAACTTTGTTCTCAATTGTCTTCCAAAAGTGATGAAAAATGAGAATATATGGC
196 TATTTTTAGTTGAAACTTTGTTCTCAATTGTCTTCCAAAAGTGATGAAAAATGAGAATTTATGGC
*
69947143 AAATGTTTCATATGCTAATGTAGTTGGGAGTTTGATGTACGTGATGGTGCATACACAACTAGACA
261 AAAGGTTTCATATGCTAATGTAGTTGGGAGTTTGATGTACGTGATGGTGCATACACAACTAGACA
69947208 TTTCATAAGCAAGTAGAGTTATGAGGTGTATGCATAATCCTAGTAAAG
326 TTTCATAAGCAAGTAGAGTTATGAGGTGTATGCATAATCCTAGTAAAG
69947256 GA
1 GA
69947258 CATTGGCAAG
Statistics
Matches: 741, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
373 741 1.00
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (373 bp):
GATAAATTTAAAAGTTCAGTTGAATTAATATTTTGAGATGAAAAATCTATGTGAGGCTAAGAAAA
TACTCAGCATGGAGATACATAAAGACAAAAAGAAAGGCACGCTTTGTTTGGCTTGAAAGCAATAT
ATGAGAAAAATAATACAATGCTTTGGTCTGAACGAAAATAAAAAAAACATGTAAGTACCCCATTT
TATTTTTAGTTGAAACTTTGTTCTCAATTGTCTTCCAAAAGTGATGAAAAATGAGAATTTATGGC
AAAGGTTTCATATGCTAATGTAGTTGGGAGTTTGATGTACGTGATGGTGCATACACAACTAGACA
TTTCATAAGCAAGTAGAGTTATGAGGTGTATGCATAATCCTAGTAAAG
Found at i:69948249 original size:20 final size:21
Alignment explanation
Indices: 69948205--69948249 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
69948195 TTCCCTCATT
*
69948205 TATTATTTTATCTGCATCTAT
1 TATTATTTTATCTGCATCTAA
* *
69948226 TATTTTTTTATCT-CATTTAA
1 TATTATTTTATCTGCATCTAA
69948246 TATT
1 TATT
69948250 CAGCAGTAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.24, C:0.11, G:0.02, T:0.62
Consensus pattern (21 bp):
TATTATTTTATCTGCATCTAA
Found at i:69960041 original size:20 final size:20
Alignment explanation
Indices: 69959979--69960049 Score: 81
Period size: 20 Copynumber: 3.5 Consensus size: 20
69959969 AGAACACACT
*
69959979 AAAATTTCTAAAGGTATACC
1 AAAATTTCTAAAGGGATACC
* * *
69959999 AAAATATCTGAAA-AGATATC
1 AAAATTTCT-AAAGGGATACC
*
69960019 AAAATTTCTAAAGGGGTACC
1 AAAATTTCTAAAGGGATACC
69960039 AAAATTTCTAA
1 AAAATTTCTAA
69960050 CATATACCTA
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 3 0.07
20 35 0.85
21 3 0.07
ACGTcount: A:0.48, C:0.13, G:0.11, T:0.28
Consensus pattern (20 bp):
AAAATTTCTAAAGGGATACC
Found at i:69961300 original size:28 final size:28
Alignment explanation
Indices: 69961260--69961339 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
69961250 CTTGTATATA
* *
69961260 GCCCATTAGGCCCAATCACGTTTATGA-G
1 GCCCATTAGGCCCAATCACATTTA-AACG
*
69961288 GCCCATTAGGCCCAAATCACATTCAAACG
1 GCCCATTAGGCCC-AATCACATTTAAACG
69961317 G-CCATTAGGCCCAATCACATTTA
1 GCCCATTAGGCCCAATCACATTTA
69961340 CAGTTATGCT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
27 10 0.22
28 25 0.54
29 11 0.24
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.23
Consensus pattern (28 bp):
GCCCATTAGGCCCAATCACATTTAAACG
Found at i:69973340 original size:17 final size:17
Alignment explanation
Indices: 69973306--69973344 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
69973296 AGTAGAGTAT
* *
69973306 ACTGAAACTGTAGTAAA
1 ACTGAAACTATAGCAAA
*
69973323 ACTGAGACTATAGCAAA
1 ACTGAAACTATAGCAAA
69973340 ACTGA
1 ACTGA
69973345 TAGAGACTGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.46, C:0.15, G:0.18, T:0.21
Consensus pattern (17 bp):
ACTGAAACTATAGCAAA
Found at i:69986087 original size:28 final size:26
Alignment explanation
Indices: 69985989--69986096 Score: 144
Period size: 27 Copynumber: 4.0 Consensus size: 26
69985979 AGCATGGCTG
* *
69985989 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
69986015 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
69986042 CCAGAACAGATATCTGTGGCATAGCCA
1 CCAGAACAGATAT-TGTGGCAGAGCCA
*
69986069 CCAGAAACAGATATTTGTGGCATAGCCA
1 CCAG-AACAGATA-TTGTGGCAGAGCCA
69986097 ATAGAACGCT
Statistics
Matches: 75, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
26 13 0.17
27 40 0.53
28 21 0.28
29 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:69989469 original size:15 final size:15
Alignment explanation
Indices: 69989449--69989478 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
69989439 CAAACTATGT
*
69989449 CTCTAATTTAGGAAA
1 CTCTAAGTTAGGAAA
69989464 CTCTAAGTTAGGAAA
1 CTCTAAGTTAGGAAA
69989479 GATACTAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (15 bp):
CTCTAAGTTAGGAAA
Found at i:69991867 original size:26 final size:26
Alignment explanation
Indices: 69991838--69991890 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
69991828 GAATGGAGGA
69991838 GATAGGCTTAAAATGGGGAAAGTGCT
1 GATAGGCTTAAAATGGGGAAAGTGCT
69991864 GATAGGCTTAAAATGGGGAAAGTGCT
1 GATAGGCTTAAAATGGGGAAAGTGCT
69991890 G
1 G
69991891 CAAAAATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.08, G:0.36, T:0.23
Consensus pattern (26 bp):
GATAGGCTTAAAATGGGGAAAGTGCT
Found at i:69994896 original size:18 final size:18
Alignment explanation
Indices: 69994868--69994913 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
69994858 AGTTGAGAGA
69994868 TGAGAGAATGATGAATAAG
1 TGAG-GAATGATGAATAAG
*
69994887 TGAGGAATGATGGATAAG
1 TGAGGAATGATGAATAAG
*
69994905 TGAGAAATG
1 TGAGGAATG
69994914 GGATCTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 21 0.84
19 4 0.16
ACGTcount: A:0.43, C:0.00, G:0.35, T:0.22
Consensus pattern (18 bp):
TGAGGAATGATGAATAAG
Found at i:70006724 original size:46 final size:46
Alignment explanation
Indices: 70006657--70006831 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
70006647 TGTAACCCGC
* *
70006657 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
* * * *
70006703 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTTGCAT
* * ** *
70006753 -C-TCA-CGAACTCGAACTCAACTCAACGAGCTCGAACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
* *
70006796 CCATAAGTGAACTCGGACTCGACTCAACGAGCTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
70006832 ATGCCCAAAT
Statistics
Matches: 102, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 58 0.57
47 25 0.25
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
Found at i:70006772 original size:93 final size:93
Alignment explanation
Indices: 70006664--70006836 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
70006654 CGCCCATAAG
* * ** * *
70006664 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTTGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
70006729 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
70006757 CGAACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCGACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
70006822 ACGAGCTCGGATGCC
66 ACGAGCTCGGATGCC
70006837 CAAATATCCT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:70009266 original size:19 final size:19
Alignment explanation
Indices: 70009174--70009304 Score: 77
Period size: 19 Copynumber: 6.9 Consensus size: 19
70009164 TATCATCTTT
* *
70009174 CATTAAAAATTTAGGTATC
1 CATTAGAAATTTTGGTATC
* *
70009193 CCTTACAAATTTTGGT-TC
1 CATTAGAAATTTTGGTATC
* *
70009211 TCGTTAG-AAGTTTGGTATC
1 -CATTAGAAATTTTGGTATC
* * * *
70009230 TATTTGAAATTCTCGTATC
1 CATTAGAAATTTTGGTATC
*
70009249 CATTAGAAATTTTGGTATTT
1 CATTAGAAATTTTGGTA-TC
** ** *
70009269 TGTTACCAATTTTTGTATC
1 CATTAGAAATTTTGGTATC
*
70009288 CATTAGAAATTTCGGTA
1 CATTAGAAATTTTGGTA
70009305 CACTCTATTG
Statistics
Matches: 79, Mismatches: 29, Indels: 8
0.68 0.25 0.07
Matches are distributed among these distances:
18 13 0.16
19 53 0.67
20 13 0.16
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.44
Consensus pattern (19 bp):
CATTAGAAATTTTGGTATC
Found at i:70009663 original size:72 final size:71
Alignment explanation
Indices: 70009528--70009663 Score: 168
Period size: 72 Copynumber: 1.9 Consensus size: 71
70009518 TATATAATTT
** * *
70009528 TTTAGAACAATTTTTGTTCAAATACTTTTGGTTTTTGTTCAAGACTTCATATTTTTCTTTTCTCA
1 TTTAGAACAATTTTTGTTCAAATACTTTTGGTTTTCCTTAAAGACTTCATATTTTTCTCTTCTCA
70009593 TCGAAA
66 TCGAAA
* * *
70009599 TTTAGGAATAATTGTTT-TTCAAGTACTTTTGGTTTTCCTTAAATG-CTTCATCTTTTTCTCTTC
1 TTTA-GAACAATT-TTTGTTCAAATACTTTTGGTTTTCCTTAAA-GACTTCATATTTTTCTCTTC
70009662 TC
63 TC
70009664 TTTTAAAGTC
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
71 4 0.07
72 47 0.85
73 4 0.07
ACGTcount: A:0.22, C:0.15, G:0.10, T:0.52
Consensus pattern (71 bp):
TTTAGAACAATTTTTGTTCAAATACTTTTGGTTTTCCTTAAAGACTTCATATTTTTCTCTTCTCA
TCGAAA
Found at i:70010050 original size:20 final size:20
Alignment explanation
Indices: 70010027--70010071 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
70010017 TGCATTATAG
*
70010027 ATTTTAGTA-TTAGTTAAAA
1 ATTTTAGTATTTAATTAAAA
*
70010046 AATTTAGTATTTAATTAAAA
1 ATTTTAGTATTTAATTAAAA
70010066 ATTTTA
1 ATTTTA
70010072 AAAATTTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (20 bp):
ATTTTAGTATTTAATTAAAA
Found at i:70010171 original size:4 final size:4
Alignment explanation
Indices: 70010164--70010194 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
70010154 CATTCATTTC
70010164 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
70010195 GAACTAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:70013079 original size:21 final size:21
Alignment explanation
Indices: 70013055--70013106 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
70013045 TTGAATCTTG
*
70013055 AACCCTAAACATTGAAACCA-A
1 AACCCTAAAC-TCGAAACCATA
* * *
70013076 AACCCCAAGCTCGAAACCATG
1 AACCCTAAACTCGAAACCATA
70013097 AACCCTAAAC
1 AACCCTAAAC
70013107 CCAAAATTAC
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.46, C:0.35, G:0.08, T:0.12
Consensus pattern (21 bp):
AACCCTAAACTCGAAACCATA
Found at i:70013207 original size:20 final size:20
Alignment explanation
Indices: 70013182--70013221 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
70013172 TTTTGATTTA
* *
70013182 AGATTCAGGGTTTAATGTTT
1 AGATTCAGAGTTTAAGGTTT
70013202 AGATTCAGAGTTTAAGGTTT
1 AGATTCAGAGTTTAAGGTTT
70013222 CAAGTTTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.05, G:0.25, T:0.42
Consensus pattern (20 bp):
AGATTCAGAGTTTAAGGTTT
Found at i:70013254 original size:20 final size:20
Alignment explanation
Indices: 70013231--70013269 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
70013221 TCAAGTTTTT
* *
70013231 GGTTCTGGTTTAGAGTTCAA
1 GGTTCGGGTTCAGAGTTCAA
70013251 GGTTCGGGTTCAGAGTTCA
1 GGTTCGGGTTCAGAGTTCA
70013270 GAATTTAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.13, G:0.33, T:0.36
Consensus pattern (20 bp):
GGTTCGGGTTCAGAGTTCAA
Found at i:70023769 original size:20 final size:20
Alignment explanation
Indices: 70023740--70023782 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
70023730 AGCACAGTCG
70023740 TGTCCATAAGCACACGGGCA
1 TGTCCATAAGCACACGGGCA
*
70023760 TGTCCCTAAGCACACGGGCA
1 TGTCCATAAGCACACGGGCA
70023780 TGT
1 TGT
70023783 GCTTTGCCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.19
Consensus pattern (20 bp):
TGTCCATAAGCACACGGGCA
Found at i:70039137 original size:18 final size:17
Alignment explanation
Indices: 70039107--70039140 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
70039097 AGAGCTTTTA
*
70039107 GAGAAAGATGAATGATG
1 GAGAAAGAAGAATGATG
70039124 GAGACAAGAAGAATGAT
1 GAGA-AAGAAGAATGAT
70039141 AGAAGCTATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.03, G:0.32, T:0.15
Consensus pattern (17 bp):
GAGAAAGAAGAATGATG
Found at i:70041244 original size:5 final size:5
Alignment explanation
Indices: 70041234--70041263 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
70041224 ACAATATTTT
70041234 ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA
70041264 TATTAAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:70046872 original size:57 final size:57
Alignment explanation
Indices: 70046727--70046855 Score: 204
Period size: 57 Copynumber: 2.3 Consensus size: 57
70046717 TTGCACTTGT
* * * *
70046727 AATTTATAGCTGTTACCAAAATATCTTTTAATGTGTATATTTATGCTATCCAAATGC
1 AATTTATAGCTGCTGCCAAAATATCTTTTAATCTGTATATTTACGCTATCCAAATGC
* *
70046784 AATTTACAGCTGCTGCCAAAATATCTTTTAATCTGTATATTTACGCTGTCCAAATGC
1 AATTTATAGCTGCTGCCAAAATATCTTTTAATCTGTATATTTACGCTATCCAAATGC
70046841 AATTTATAGCTGCTG
1 AATTTATAGCTGCTG
70046856 TCACAATGTC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 65 1.00
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (57 bp):
AATTTATAGCTGCTGCCAAAATATCTTTTAATCTGTATATTTACGCTATCCAAATGC
Done.