Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 213 of 333
Found at i:70066685 original size:24 final size:24
Alignment explanation
Indices: 70066658--70066706 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
70066648 TTATAGTTTA
70066658 TAGAAATGTATAAATAAGATGTAG
1 TAGAAATGTATAAATAAGATGTAG
70066682 TAGAAATGTATAAATAAGATGTAG
1 TAGAAATGTATAAATAAGATGTAG
70066706 T
1 T
70066707 TATGGTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.49, C:0.00, G:0.20, T:0.31
Consensus pattern (24 bp):
TAGAAATGTATAAATAAGATGTAG
Found at i:70073856 original size:53 final size:53
Alignment explanation
Indices: 70073662--70073868 Score: 204
Period size: 53 Copynumber: 3.8 Consensus size: 53
70073652 ATTAGGGTTT
*
70073662 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCATAAGGC
* ** *
70073717 AAGGATATCATGTAAG-CCATATCAAGACATGGCATTGATAAGTTACTATAAGG-
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
** * * * *
70073770 AAAAAGTCCCATGTAAGAGCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGA-TACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
*** *
70073824 AAGGATACCATGTAAGACCATGTTGAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
70073869 TCAAAAGGAT
Statistics
Matches: 121, Mismatches: 25, Indels: 14
0.76 0.16 0.09
Matches are distributed among these distances:
51 2 0.02
52 2 0.02
53 48 0.40
54 32 0.26
55 37 0.31
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:70084446 original size:55 final size:54
Alignment explanation
Indices: 70084342--70084593 Score: 223
Period size: 55 Copynumber: 4.7 Consensus size: 54
70084332 GGGTTTAAGA
* * * * *
70084342 ATACCACGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTT-TCTAAGGCAAGG
1 ATACCATGTAAGACCATGTCAAGACATGG-CATTGGTAA-GTTCTATAAGGCAAGG
*
70084397 ATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGG
1 ATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-CTATAAGGC-AAGG
* * ** * *
70084453 -TCCCATGTAAGAGCATGAGAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGG
1 ATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCTATAAGGCAAGG
* * *
70084505 ATACCATGTAAAGACCATGTCGAGACATGGCAATGGTAAGTT-T-CAA---AAGG
1 ATACCATGT-AAGACCATGTCAAGACATGGCATTGGTAAGTTCTATAAGGCAAGG
* * * * *
70084555 ATACCACGTAAGACCATGACAAGTCATGGAAATGGTAAG
1 ATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
70084594 GTACCCGTGT
Statistics
Matches: 164, Mismatches: 27, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
49 26 0.16
50 12 0.07
52 4 0.02
53 19 0.12
54 33 0.20
55 66 0.40
56 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.26, T:0.21
Consensus pattern (54 bp):
ATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCTATAAGGCAAGG
Found at i:70084805 original size:16 final size:16
Alignment explanation
Indices: 70084784--70084814 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70084774 ATAAATTTGA
70084784 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
70084800 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
70084815 AGTGAAAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:70088943 original size:28 final size:29
Alignment explanation
Indices: 70088892--70088947 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
70088882 TACAGGGGTT
*
70088892 TTCACACAGCCTAGAACACTCCCGTGTCC
1 TTCACACAGCCTAGAACACGCCCGTGTCC
* *
70088921 TTCACACGGCC-AGGACACGCCCGTGTC
1 TTCACACAGCCTAGAACACGCCCGTGTC
70088948 TTAGTCCGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 14 0.58
29 10 0.42
ACGTcount: A:0.21, C:0.41, G:0.20, T:0.18
Consensus pattern (29 bp):
TTCACACAGCCTAGAACACGCCCGTGTCC
Found at i:70092576 original size:18 final size:19
Alignment explanation
Indices: 70092555--70092596 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
70092545 TTTAAGGTTA
* *
70092555 TTTTAATTT-TTTTAATGC
1 TTTTAATTTGTGTAAATGC
70092573 TTTT-ATTTGTGTAAATGC
1 TTTTAATTTGTGTAAATGC
70092591 TTTTAA
1 TTTTAA
70092597 GGTATTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 4 0.20
18 15 0.75
19 1 0.05
ACGTcount: A:0.24, C:0.05, G:0.10, T:0.62
Consensus pattern (19 bp):
TTTTAATTTGTGTAAATGC
Found at i:70095087 original size:47 final size:47
Alignment explanation
Indices: 70095031--70095138 Score: 216
Period size: 47 Copynumber: 2.3 Consensus size: 47
70095021 TATACTCAAG
70095031 ATAGATAAAATCTAAGAAAATAAATTGCATAAATTAGATAGAGAATT
1 ATAGATAAAATCTAAGAAAATAAATTGCATAAATTAGATAGAGAATT
70095078 ATAGATAAAATCTAAGAAAATAAATTGCATAAATTAGATAGAGAATT
1 ATAGATAAAATCTAAGAAAATAAATTGCATAAATTAGATAGAGAATT
70095125 ATAGATAAAATCTA
1 ATAGATAAAATCTA
70095139 TGTAGATTCT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 61 1.00
ACGTcount: A:0.56, C:0.05, G:0.12, T:0.28
Consensus pattern (47 bp):
ATAGATAAAATCTAAGAAAATAAATTGCATAAATTAGATAGAGAATT
Found at i:70099256 original size:19 final size:18
Alignment explanation
Indices: 70099220--70099258 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
70099210 TGAAATAATT
* *
70099220 TGGAAATGAAAATGGAAA
1 TGGAAAAGAAAAAGGAAA
70099238 TGGAAAAGAAAAAGAGAAA
1 TGGAAAAGAAAAAG-GAAA
70099257 TG
1 TG
70099259 ATTCATTTGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.59, C:0.00, G:0.28, T:0.13
Consensus pattern (18 bp):
TGGAAAAGAAAAAGGAAA
Found at i:70102599 original size:42 final size:42
Alignment explanation
Indices: 70102535--70102684 Score: 131
Period size: 42 Copynumber: 3.6 Consensus size: 42
70102525 AGATCCTGTA
* * * *
70102535 TAAGACCATATCTGGGATATGGCATTGATATAAGATTTTGTG
1 TAAGACCATATCTAGGACATGGCATCGATATAAGATTTCGTG
* * * * * *
70102577 TAAGACCATGTCTAGGACATGGCGTCGAAAGAAGAATTCGTA
1 TAAGACCATATCTAGGACATGGCATCGATATAAGATTTCGTG
* * * * ** *
70102619 TAAGACCATATCTGGGATATGGCATCGATGTGAGATCCCATG
1 TAAGACCATATCTAGGACATGGCATCGATATAAGATTTCGTG
*
70102661 TAAGA-CATGTCTAGGACATGGCAT
1 TAAGACCATATCTAGGACATGGCAT
70102685 TGGCATCTTA
Statistics
Matches: 82, Mismatches: 26, Indels: 1
0.75 0.24 0.01
Matches are distributed among these distances:
41 16 0.20
42 66 0.80
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.27
Consensus pattern (42 bp):
TAAGACCATATCTAGGACATGGCATCGATATAAGATTTCGTG
Found at i:70104842 original size:20 final size:20
Alignment explanation
Indices: 70104817--70104857 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
70104807 ATCAGAAAAG
70104817 AAAAGAGTTCCTTGAGCTGA
1 AAAAGAGTTCCTTGAGCTGA
70104837 AAAAGAGTTCCTTGAGCTGA
1 AAAAGAGTTCCTTGAGCTGA
70104857 A
1 A
70104858 GCAAGGTAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (20 bp):
AAAAGAGTTCCTTGAGCTGA
Found at i:70107228 original size:25 final size:25
Alignment explanation
Indices: 70107200--70107278 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
70107190 CTAATGGCCG
70107200 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
70107225 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
70107247 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
70107272 ATGTGAT
1 ATGTGAT
70107279 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:70107349 original size:49 final size:47
Alignment explanation
Indices: 70107181--70107377 Score: 277
Period size: 47 Copynumber: 4.1 Consensus size: 47
70107171 TATGAAATGA
70107181 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
70107228 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
70107275 TGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
* * * ** * * * * *
70107324 TGACAGGGCCGAGCGGCCAACGTGATGGATGTGAAACTGTATAAATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
70107371 TGATAAG
1 TGATAAG
70107378 TCCCGAAGGG
Statistics
Matches: 134, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
47 97 0.72
49 37 0.28
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
Found at i:70107552 original size:37 final size:37
Alignment explanation
Indices: 70107496--70107574 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
70107486 CCGAGCTCTA
* * *
70107496 AAGACCTGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
70107533 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
70107570 AAGAC
1 AAGAC
70107575 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:70114132 original size:85 final size:85
Alignment explanation
Indices: 70113989--70114163 Score: 298
Period size: 85 Copynumber: 2.1 Consensus size: 85
70113979 ATGAATATTC
* * * *
70113989 TTGATGTTGTTCGATAAAGGTTTGAGGTGATAAAAGCTGGTTGGACCTTAGGAATACTTAGGGTA
1 TTGATATTGTTCGATAAAGATTTGAGGTGATAAAAGCTAGTTGGACCTTAGAAATACTTAGGGTA
70114054 TAAAAATTAAGACATTTGGG
66 TAAAAATTAAGACATTTGGG
70114074 TTGATATTGTTCGATAAAGATTTGAGGTGATAAAAG-TCAGTTGGACCTTAGAAATACTTAGGGT
1 TTGATATTGTTCGATAAAGATTTGAGGTGATAAAAGCT-AGTTGGACCTTAGAAATACTTAGGGT
70114138 ATAAAAATTAAGACATTTGGG
65 ATAAAAATTAAGACATTTGGG
70114159 TTGAT
1 TTGAT
70114164 GAGATCCCGT
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
84 1 0.01
85 84 0.99
ACGTcount: A:0.34, C:0.07, G:0.26, T:0.34
Consensus pattern (85 bp):
TTGATATTGTTCGATAAAGATTTGAGGTGATAAAAGCTAGTTGGACCTTAGAAATACTTAGGGTA
TAAAAATTAAGACATTTGGG
Found at i:70114267 original size:42 final size:42
Alignment explanation
Indices: 70114175--70114373 Score: 182
Period size: 42 Copynumber: 4.6 Consensus size: 42
70114165 AGATCCCGTA
*
70114175 TAAGACCATATCTGGGATATGGCATCGGCATTAGTATGAGTTATCATG
1 TAAGACCATATCTGGGATATGGCATC-G-A-TA-TAAGA-TT-TCATG
* **
70114223 TAAGACCATATCTGGGATATGGCATTGATATAAGATTTTGTG
1 TAAGACCATATCTGGGATATGGCATCGATATAAGATTTCATG
* ** * * * * *
70114265 TAAGACCATATCTGGGACATGGTGTCGAAATGAGAATTCGTA
1 TAAGACCATATCTGGGATATGGCATCGATATAAGATTTCATG
* * *
70114307 TAAGACCATATCTGGGATATGGCATCGATGTGAGATCTCATG
1 TAAGACCATATCTGGGATATGGCATCGATATAAGATTTCATG
* * *
70114349 TAAGTCCATGTCTGGGACATGGCAT
1 TAAGACCATATCTGGGATATGGCAT
70114374 TGGCATCTTA
Statistics
Matches: 126, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
42 91 0.72
43 2 0.02
44 4 0.03
45 2 0.02
46 1 0.01
47 1 0.01
48 25 0.20
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCGATATAAGATTTCATG
Found at i:70117510 original size:22 final size:22
Alignment explanation
Indices: 70117485--70117530 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
70117475 ATCTATATGT
*
70117485 ATTCAAAATTAAT-CACCAACAC
1 ATTC-AAATTAATACACAAACAC
*
70117507 ATTCAATTTAATACACAAACAC
1 ATTCAAATTAATACACAAACAC
70117529 AT
1 AT
70117531 CTTTGGGCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (22 bp):
ATTCAAATTAATACACAAACAC
Found at i:70119666 original size:12 final size:13
Alignment explanation
Indices: 70119651--70119679 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
70119641 CAAAACTTTC
70119651 ACACATACT-TAA
1 ACACATACTGTAA
70119663 ACACATACTGTAA
1 ACACATACTGTAA
70119676 ACAC
1 ACAC
70119680 GAAAAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.48, C:0.28, G:0.03, T:0.21
Consensus pattern (13 bp):
ACACATACTGTAA
Found at i:70129866 original size:46 final size:47
Alignment explanation
Indices: 70129814--70130131 Score: 162
Period size: 46 Copynumber: 6.8 Consensus size: 47
70129804 TCATTCGTGT
70129814 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCACATTATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTA-GA
**
70129860 GAGCTAGTGTAAGACCATGTCTGGGACATGGCAT-G--GGCATTGAGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATT-AGA
* * * * * *
70129905 CAAGTGTAGAGTAAGA-CATGTCTCGGACAT-GCATCAACCTCA--AGA
1 -GAG-CTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTAGA
* * * * *
70129950 CGTAAGCCAATATAAGA-CATGTCTGGGAAAT-GCATCGACTACA--AGA
1 -G--AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTAGA
* * * *
70129996 TGTGCTAGTGTAAGACCATGTCTGGGACATGGAATTG-GCACAGTTATGTGA
1 -GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACA-TTA---GA
* * * **
70130047 GAGATAATGTAAGACCATGTCTGGGACATGGCATC-AGCCTCGAAGATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CCAC-ATTA-GA
* * * *
70130096 TAGCCAATGTAAGACCATGTTTGGGACATGGCATCG
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
70130132 GCACTTTATC
Statistics
Matches: 207, Mismatches: 43, Indels: 40
0.71 0.15 0.14
Matches are distributed among these distances:
44 9 0.04
45 30 0.14
46 65 0.31
47 26 0.13
48 7 0.03
49 34 0.16
50 30 0.14
51 5 0.02
52 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.23
Consensus pattern (47 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTAGA
Found at i:70145331 original size:68 final size:67
Alignment explanation
Indices: 70145285--70145442 Score: 271
Period size: 68 Copynumber: 2.3 Consensus size: 67
70145275 ATACTATATA
*
70145285 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGAGATGTATCCCATGTAGACAAGAGAGCTACG-GAGAGATA
70145350 AAT
65 AAT
70145353 GTAGCTAGGTCACATGTGTGATACGAGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGAGATGTATCCCATGTAGACAAGAGAGCTACG-GAGAGATA
70145418 AAT
65 AAT
* *
70145421 GTAGCTAGGTCGCATGAGTGAT
1 GTAGCTAGGTCACATGTGTGAT
70145443 TCCAAGTGAA
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 87 1.00
ACGTcount: A:0.32, C:0.15, G:0.30, T:0.24
Consensus pattern (67 bp):
GTAGCTAGGTCACATGTGTGATACGAGATGTATCCCATGTAGACAAGAGAGCTACGGAGAGATAA
AT
Found at i:70145516 original size:66 final size:67
Alignment explanation
Indices: 70145319--70145516 Score: 201
Period size: 68 Copynumber: 2.9 Consensus size: 67
70145309 GGGATGTATC
* * *
70145319 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATA-CGAGATG
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAG-TG
* *
70145383 TA--TC-
61 AAGGACA
*
70145387 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
70145452 AGGACA
62 AGGACA
*
70145458 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGATACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
70145517 TTCACCATGT
Statistics
Matches: 117, Mismatches: 8, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
66 25 0.21
67 9 0.08
68 58 0.50
69 3 0.03
70 1 0.01
71 21 0.18
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:70147063 original size:27 final size:27
Alignment explanation
Indices: 70147033--70147208 Score: 201
Period size: 27 Copynumber: 6.5 Consensus size: 27
70147023 ATTGAGTCCA
* * * *
70147033 CACACTCAGTGCTATATAATCAACTCG
1 CACACTTAGTGCTACATAGTCAAATCG
* *
70147060 CACACTTAGTGCTACGTAATCAAATCG
1 CACACTTAGTGCTACATAGTCAAATCG
70147087 CACACTTAGTGCTACATAGTCAAACTCG
1 CACACTTAGTGCTACATAGTCAAA-TCG
** * *
70147115 CACACTTAGTGCCGCATGGTCAATTCG
1 CACACTTAGTGCTACATAGTCAAATCG
* **
70147142 CACACTTAGTGC-ATCATATTCATTTCG
1 CACACTTAGTGCTA-CATAGTCAAATCG
*
70147169 CACACTTAGTGCAACATAGTCAAATCG
1 CACACTTAGTGCTACATAGTCAAATCG
70147196 CACACTTAGTGCT
1 CACACTTAGTGCT
70147209 GTACAATTTA
Statistics
Matches: 128, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CACACTTAGTGCTACATAGTCAAATCG
Found at i:70147170 original size:82 final size:81
Alignment explanation
Indices: 70147052--70147207 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70147042 TGCTATATAA
* *
70147052 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
70147117 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
70147134 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
70147198 CACTTAGTGC
65 CACTTAGTGC
70147208 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:70155157 original size:27 final size:27
Alignment explanation
Indices: 70155127--70155304 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
70155117 ATATTGAGTC
* * * *
70155127 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
70155154 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70155181 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
70155209 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
70155236 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
70155263 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70155290 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70155305 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:70155266 original size:82 final size:81
Alignment explanation
Indices: 70155148--70155303 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70155138 TGCTATATAA
* *
70155148 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
70155213 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
70155230 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
70155294 CACTTAGTGC
65 CACTTAGTGC
70155304 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:70164780 original size:50 final size:49
Alignment explanation
Indices: 70164529--70164847 Score: 231
Period size: 46 Copynumber: 6.7 Consensus size: 49
70164519 TCATTTGTGT
* * ** *
70164529 GAGCTAGTGTTAGA-CATGTCTGGGACAT-GCATCGGCCA-C-ATTATAA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCGAAGATGA
* * *
70164575 GAGCCAGTGTAAGACTATGTCTGGGACATGGCATCGGCATTG-AGACGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAAGATGA
* * ** * *
70164623 GTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAACCTCG-GGAT-A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAAGATGA
* * *
70164668 TAAGCCAGTATAAGA-CATGTTTGGGACAT-GCATCGGC-TACG-AGAT--
1 -GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-CGAAGATGA
* * * * *
70164713 GTGTCAGTGTAAGACCATGTCTGCGACATGGCATCGGCATGGTTATG-TGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCG--AAGATGA
* * *
70164763 GAGCTAGTGTAAGACCATTTCTGGGACATGGCATCGGCCTCGAAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAAGATGA
*
70164812 TAGCCAGTGTAA-AGCCATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGA-CCATGTCTGGGACATGGCATCG
70164848 ACACTTTACC
Statistics
Matches: 213, Mismatches: 44, Indels: 29
0.74 0.15 0.10
Matches are distributed among these distances:
44 10 0.05
45 14 0.07
46 65 0.31
47 29 0.14
48 25 0.12
49 35 0.16
50 35 0.16
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAAGATGA
Found at i:70171085 original size:27 final size:27
Alignment explanation
Indices: 70171033--70171086 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
70171023 ATTTTTGTTA
*
70171033 AGTTATAAATTATAAATATATTATTTT
1 AGTTATAAATTATAAATAAATTATTTT
* *
70171060 AGTTATAAATTAT-ATTAAATTAATTT
1 AGTTATAAATTATAAATAAATTATTTT
70171086 A
1 A
70171087 AAATAATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (27 bp):
AGTTATAAATTATAAATAAATTATTTT
Found at i:70171418 original size:21 final size:21
Alignment explanation
Indices: 70171389--70171429 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
70171379 ATTTTATTTA
* *
70171389 ATTAATAAATAGATATTTATT
1 ATTAATAAAAAAATATTTATT
*
70171410 ATTATTAAAAAAATATTTAT
1 ATTAATAAAAAAATATTTAT
70171430 GAGATAAATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (21 bp):
ATTAATAAAAAAATATTTATT
Found at i:70172469 original size:33 final size:33
Alignment explanation
Indices: 70172426--70172502 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 33
70172416 ATGGATAAGT
* *
70172426 ATTGATATTGAATTGTATATTAA-TGAAAAGTGAA
1 ATTGA-ATTGAATTGTAAATGAATTG-AAAGTGAA
* *
70172460 ATTGAATTGATTTGTAAATGAATTGAAAGTGAT
1 ATTGAATTGAATTGTAAATGAATTGAAAGTGAA
70172493 ATTGAATTGA
1 ATTGAATTGA
70172503 GAAAATGAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
33 31 0.82
34 7 0.18
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (33 bp):
ATTGAATTGAATTGTAAATGAATTGAAAGTGAA
Found at i:70178262 original size:39 final size:39
Alignment explanation
Indices: 70178072--70178265 Score: 298
Period size: 39 Copynumber: 5.0 Consensus size: 39
70178062 TTCAAGACGC
* **
70178072 TGGAAATGTATCCGGGCTAAAGTACCGCAGGCTTCATGT
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGT
* **
70178111 TGGAAATGTATCCGGGCTAAAGTCCCACAGGCTTCCTGT
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGT
* * *
70178150 TGGAAGTGTATCCAGGCTAAAGTCCCGCAGGCTTTGTGC
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGT
70178189 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGT
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGT
*
70178228 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTG
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
70178266 CTGGTAATAT
Statistics
Matches: 142, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 142 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (39 bp):
TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGT
Found at i:70181817 original size:55 final size:55
Alignment explanation
Indices: 70181741--70181864 Score: 160
Period size: 55 Copynumber: 2.3 Consensus size: 55
70181731 CGTGCCCGTA
* * * *
70181741 GCCCGTGTGCAACACTGACTTTAAAACATGGA-CATGGCGCACGCCCGTGTGGCCT
1 GCCCGTGTACAACACTAACTTTAAAACA-CGACCATGGCACACGCCCGTGTGGCCT
* * *
70181796 GCCCGTGTACAATACTAACTTTAATACACGACCATGGCACACGCCCGTGTTGCCT
1 GCCCGTGTACAACACTAACTTTAAAACACGACCATGGCACACGCCCGTGTGGCCT
*
70181851 GCCCGTATACAACA
1 GCCCGTGTACAACA
70181865 ATGACTTAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 2 0.03
55 57 0.97
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.21
Consensus pattern (55 bp):
GCCCGTGTACAACACTAACTTTAAAACACGACCATGGCACACGCCCGTGTGGCCT
Found at i:70186439 original size:27 final size:28
Alignment explanation
Indices: 70186408--70186469 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
70186398 ACAGGGTTAG
* *
70186408 CACATAT-GGTTCGCACCTAGTGGTTGTT
1 CACATATGGGTTCGCACCCAGAGGTT-TT
*
70186436 -ACATATGGGTTTGCACCCAGAGGTTTT
1 CACATATGGGTTCGCACCCAGAGGTTTT
70186463 CACATAT
1 CACATAT
70186470 ATGGGTTTGC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 8 0.28
28 21 0.72
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.34
Consensus pattern (28 bp):
CACATATGGGTTCGCACCCAGAGGTTTT
Found at i:70188715 original size:55 final size:56
Alignment explanation
Indices: 70188650--70188764 Score: 130
Period size: 55 Copynumber: 2.1 Consensus size: 56
70188640 AGCCTGGCTG
* * *
70188650 CCAGATACAGA-AAATGTGAC-AGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAACGTGACAAG-GCCACCAGA-ACAGATACTTTGTGGCA-TAGCCA
* *
70188706 CCAGA-ACAGATATACGTGGCAAGGCCACCAGAACAGATACTTTGTGGCATAGCCA
1 CCAGATACAGATAAACGTGACAAGGCCACCAGAACAGATACTTTGTGGCATAGCCA
70188761 CCAG
1 CCAG
70188765 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 19 0.37
57 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAAGGCCACCAGAACAGATACTTTGTGGCATAGCCA
Found at i:70188761 original size:28 final size:27
Alignment explanation
Indices: 70188675--70188764 Score: 103
Period size: 27 Copynumber: 3.2 Consensus size: 27
70188665 GTGACAGAGT
70188675 CACCAGATACAGATATTTTGTGGCAGT-GC
1 CACCAGA-ACAGATA-TTTGTGGCA-TAGC
**
70188704 CACCAGAACAGATATACGTGGCA-AGGC
1 CACCAGAACAGATATTTGTGGCATA-GC
70188731 CACCAGAACAGATACTTTGTGGCATAGC
1 CACCAGAACAGATA-TTTGTGGCATAGC
70188759 CACCAG
1 CACCAG
70188765 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
27 23 0.43
28 22 0.42
29 8 0.15
ACGTcount: A:0.32, C:0.26, G:0.23, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCATAGC
Found at i:70188917 original size:28 final size:28
Alignment explanation
Indices: 70188870--70188934 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
70188860 AAATTAACCC
*
70188870 TAGGGGTATAAAGGTCATTTTGCACACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
* *
70188898 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
70188926 TAGGGGTAT
1 TAGGGGTAT
70188935 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.31, C:0.09, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCACACA
Found at i:70192587 original size:40 final size:40
Alignment explanation
Indices: 70192532--70192772 Score: 239
Period size: 40 Copynumber: 6.0 Consensus size: 40
70192522 CGGATGATAA
* *
70192532 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT-T
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-GCTAATAT
* *
70192572 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATAT
*
70192612 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGA--GCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTA--ATAT
* *
70192652 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGT--TATTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATAT
* * *
70192690 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATAT
* *
70192731 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-GCTAATAT
70192771 CC
1 CC
70192773 AGCTAAACTC
Statistics
Matches: 170, Mismatches: 18, Indels: 26
0.79 0.08 0.12
Matches are distributed among these distances:
37 2 0.01
38 3 0.02
39 32 0.19
40 127 0.75
41 5 0.03
42 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATAT
Found at i:70192788 original size:79 final size:79
Alignment explanation
Indices: 70192572--70192755 Score: 271
Period size: 79 Copynumber: 2.3 Consensus size: 79
70192562 GTGGCTAATT
* *
70192572 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* * *
70192637 TGCGAGCTATTATAT
65 TGCAAGCTACTATAA
* *
70192652 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
70192716 TGCAAGTTACTATAA
65 TGCAAGCTACTATAA
70192731 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
70192756 AGCTAGTGGC
Statistics
Matches: 94, Mismatches: 10, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
79 59 0.63
80 35 0.37
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCAAGCTACTATAA
Found at i:70207611 original size:39 final size:38
Alignment explanation
Indices: 70207521--70207666 Score: 202
Period size: 39 Copynumber: 3.8 Consensus size: 38
70207511 TCGGACATAT
*
70207521 TTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGTATAA
* ** *
70207559 TTCCAGCATATAGCCTGCAAACCTTAAGTCCAGATATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCC-GGTATAA
*
70207598 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGGTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCC-GGTATAA
* *
70207637 TTCTAGCACATAGCCTGCGGACCCTAAGTC
1 TTCCAGCACATAGCCTGCGGACCTTAAGTC
70207667 TGGATAAACA
Statistics
Matches: 95, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
38 27 0.28
39 68 0.72
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.23
Consensus pattern (38 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGTATAA
Found at i:70214515 original size:27 final size:27
Alignment explanation
Indices: 70214485--70214612 Score: 186
Period size: 27 Copynumber: 4.7 Consensus size: 27
70214475 TACTGAAATG
* * *
70214485 CCCTCAATTTGTAAAATTACTGTTTTA
1 CCCTCGATTTATAAAATTACCGTTTTA
70214512 CCCTCGATTTA-AAGAATTACCGTTTTA
1 CCCTCGATTTATAA-AATTACCGTTTTA
70214539 CCCTCGATTTATAAAATTACCGTTTTA
1 CCCTCGATTTATAAAATTACCGTTTTA
*
70214566 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAAAATTACCGTTTTA
* *
70214593 CACTCGATTTACAAAATTAC
1 CCCTCGATTTATAAAATTAC
70214613 TAAAATACCC
Statistics
Matches: 92, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
26 2 0.02
27 88 0.96
28 2 0.02
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTATAAAATTACCGTTTTA
Found at i:70214630 original size:27 final size:27
Alignment explanation
Indices: 70214600--70214788 Score: 114
Period size: 27 Copynumber: 7.0 Consensus size: 27
70214590 TTACACTCGA
* * *
70214600 TTTACAAAATTACTAAAATACCCTTGG
1 TTTATAAAATTACCAAAATACCCCTGG
* ** *
70214627 TTTACAAAATTTAATAAAAATA-CCCTCG
1 TTTATAAAA-TT-ACCAAAATACCCCTGG
* * *
70214655 ATCAGTAAAATTACCAAAATACCCCTGA
1 TTTA-TAAAATTACCAAAATACCCCTGG
* *
70214683 TTTGTAAAATTACCAAAATACCCCTAG
1 TTTATAAAATTACCAAAATACCCCTGG
* * * *
70214710 CTTGTAAAATTACCAAAATACCCTTGA
1 TTTATAAAATTACCAAAATACCCCTGG
* * * * *
70214737 TTTGTGAAATTATCAAAATA-CTCTCGA
1 TTTATAAAATTACCAAAATACCCCT-GG
* *
70214764 TTTGTAAAA-TATCAAAATACCCCTG
1 TTTATAAAATTACCAAAATACCCCTG
70214789 TAGGGTAGAA
Statistics
Matches: 129, Mismatches: 27, Indels: 13
0.76 0.16 0.08
Matches are distributed among these distances:
26 13 0.10
27 90 0.70
28 15 0.12
29 11 0.09
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
TTTATAAAATTACCAAAATACCCCTGG
Found at i:70214724 original size:54 final size:54
Alignment explanation
Indices: 70214659--70214788 Score: 174
Period size: 54 Copynumber: 2.4 Consensus size: 54
70214649 CCCTCGATCA
70214659 GTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTAG-CTT
1 GTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATA-CCCTAGACTT
* * * * * *
70214713 GTAAAATTACCAAAATACCCTTGATTTGTGAAATTATCAAAATACTCTCGATTT
1 GTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTAGACTT
*
70214767 GTAAAA-TATCAAAATACCCCTG
1 GTAAAATTACCAAAATACCCCTG
70214789 TAGGGTAGAA
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
53 18 0.27
54 49 0.73
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (54 bp):
GTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTAGACTT
Found at i:70214851 original size:27 final size:27
Alignment explanation
Indices: 70214778--70214910 Score: 160
Period size: 27 Copynumber: 5.0 Consensus size: 27
70214768 TAAAATATCA
* *
70214778 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACCG
70214805 AAATACCC-TGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
70214831 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * * *
70214858 AAATACCCATATAGGGTATAATTATCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * * *
70214885 AGATATCCTTGTGGGGTAAAATTACC
1 AAATACCCTTGTAGGGTAGAATTACC
70214911 ATTTTGCCCC
Statistics
Matches: 91, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 25 0.27
27 66 0.73
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.26
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACCG
Found at i:70214902 original size:54 final size:53
Alignment explanation
Indices: 70214778--70214906 Score: 161
Period size: 53 Copynumber: 2.4 Consensus size: 53
70214768 TAAAATATCA
* * * *
70214778 AAATACCCCTGTAGGGTAGAATTACTGAAATACCCTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCTATAGGGTAGAATTACCG
* *
70214831 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCATATAGGGTATAATTATCG
1 AAATACCCTTGTAGGGTAGAAATACCGAAATACCC-TATAGGGTAGAATTACCG
* * *
70214885 AGATATCCTTGTGGGGTA-AAAT
1 AAATACCCTTGTAGGGTAGAAAT
70214907 TACCATTTTG
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
53 36 0.55
54 30 0.45
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (53 bp):
AAATACCCTTGTAGGGTAGAAATACCGAAATACCCTATAGGGTAGAATTACCG
Found at i:70215151 original size:25 final size:25
Alignment explanation
Indices: 70215113--70215182 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
70215103 AGGAAGTGCT
* * *
70215113 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* * *
70215138 AAAAGAGCTTTGCCCCAATTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
70215163 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
70215183 ATTAAAAGAG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:70215195 original size:24 final size:24
Alignment explanation
Indices: 70215138--70215209 Score: 67
Period size: 24 Copynumber: 3.0 Consensus size: 24
70215128 TAGTTTACCG
*
70215138 AAAAGA-GCTTTGCCCCAATTTATC
1 AAAAGAGGCTTTGCCCC-AGTTATC
*
70215162 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
70215186 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
70215210 ATGATAAAGC
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
23 1 0.03
24 20 0.50
25 19 0.47
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:70215439 original size:31 final size:31
Alignment explanation
Indices: 70215404--70215487 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
70215394 CGTTTACAGT
70215404 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
70215435 AAAGGCTTCGGCCCAGTGACATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
70215466 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
70215488 CTGAGATTGA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 4 0.08
31 46 0.92
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:70216416 original size:17 final size:16
Alignment explanation
Indices: 70216389--70216425 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
70216379 AACCCTAAAT
*
70216389 TTTCCTTTTCTTTTTC
1 TTTCCTTTTCTTCTTC
70216405 TTTCCTTTTTCTTCTTC
1 TTTCC-TTTTCTTCTTC
70216422 TTTC
1 TTTC
70216426 TTTCCCTGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTCCTTTTCTTCTTC
Found at i:70216519 original size:14 final size:15
Alignment explanation
Indices: 70216483--70216519 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
70216473 TTTCTTTTAT
*
70216483 TTATTATAACTATTA
1 TTATTATATCTATTA
70216498 -TATTATATC-ATTA
1 TTATTATATCTATTA
70216511 TTATTATAT
1 TTATTATAT
70216520 TTTTAATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (15 bp):
TTATTATATCTATTA
Found at i:70216534 original size:18 final size:20
Alignment explanation
Indices: 70216507--70216545 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
70216497 ATATTATATC
*
70216507 ATTATTATTA-TATTT-TTA
1 ATTATAATTATTATTTCTTA
70216525 ATTATAATTATTATTTCTTA
1 ATTATAATTATTATTTCTTA
70216545 A
1 A
70216546 ATATTAAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 5 0.28
20 4 0.22
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (20 bp):
ATTATAATTATTATTTCTTA
Found at i:70222055 original size:40 final size:41
Alignment explanation
Indices: 70221878--70222055 Score: 251
Period size: 40 Copynumber: 4.5 Consensus size: 41
70221868 AAACCAAGTA
* * *
70221878 CCTTCGGGATTTAG-CTGG-ATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGAATATAG-TAACTCGCACAAATG
*
70221917 CCTTCGGGACTTAGCCC-GAATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATG
70221957 CCTTCGGGACTTAGCCCGG-ATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATG
* *
70221997 CCTTCGGGACTTAGCCCGGAAT-TAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATG
70222037 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
70222056 TTACCATCCG
Statistics
Matches: 127, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
39 15 0.12
40 109 0.86
41 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATG
Found at i:70228571 original size:123 final size:123
Alignment explanation
Indices: 70228351--70228572 Score: 417
Period size: 123 Copynumber: 1.8 Consensus size: 123
70228341 CATTACTATA
*
70228351 AATAAACACATTTTTAACTGTCAGAAATCTCCACACTATCAAATAAACACATATCGGCATGTATA
1 AATAAACACATTTTTAACTGTCAAAAATCTCCACACTATCAAATAAACACATATCGGCATGTATA
*
70228416 GCTAGACCCGGACGTATTACGGTAGTCTTAGAATCGACTAAACCGTAGCTCTGATACC
66 GCTAGACCCGGACGTATTACGGTAGTCCTAGAATCGACTAAACCGTAGCTCTGATACC
*
70228474 AATAAACACATTTTTAACTGTCAAAAATCTCCACACTATCAAATAAACACTTATCGGCATGTATA
1 AATAAACACATTTTTAACTGTCAAAAATCTCCACACTATCAAATAAACACATATCGGCATGTATA
70228539 GCTAGACCCGGACGTATTACGGTAGTCCTAGAAT
66 GCTAGACCCGGACGTATTACGGTAGTCCTAGAAT
70228573 AGATCTCCTT
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
123 96 1.00
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (123 bp):
AATAAACACATTTTTAACTGTCAAAAATCTCCACACTATCAAATAAACACATATCGGCATGTATA
GCTAGACCCGGACGTATTACGGTAGTCCTAGAATCGACTAAACCGTAGCTCTGATACC
Found at i:70235038 original size:32 final size:32
Alignment explanation
Indices: 70235002--70235065 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
70234992 CCTCAAGATT
*
70235002 AACTCAAAGGATAAGCCTTTAGTTTCAGCTTC
1 AACTCAAAGGATAAGCCTTTAGTTTCAACTTC
70235034 AACTCAAAGGATAAGCCTTTAGTTTCAACTTC
1 AACTCAAAGGATAAGCCTTTAGTTTCAACTTC
70235066 CAGACACACA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31
Consensus pattern (32 bp):
AACTCAAAGGATAAGCCTTTAGTTTCAACTTC
Found at i:70235240 original size:21 final size:23
Alignment explanation
Indices: 70235214--70235263 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
70235204 TCAAAAATAT
*
70235214 TTTATGTA-TATCTTTTCCTT-A
1 TTTATGTATTATATTTTCCTTGA
*
70235235 TTTATGTATTTTATTTTCCTTGA
1 TTTATGTATTATATTTTCCTTGA
70235258 TTTATG
1 TTTATG
70235264 GGCTAATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 8 0.32
22 10 0.40
23 7 0.28
ACGTcount: A:0.18, C:0.10, G:0.08, T:0.64
Consensus pattern (23 bp):
TTTATGTATTATATTTTCCTTGA
Found at i:70237473 original size:46 final size:45
Alignment explanation
Indices: 70237385--70237600 Score: 217
Period size: 46 Copynumber: 4.7 Consensus size: 45
70237375 CATATCTATC
* * *
70237385 CCGATGCCATGTCCTAGACAGGGTCTTACACTGACACATCTCGTA-G
1 CCGATG-CATGTCCCAGACA-TGTCTTACACTGGCACATCTCGTAGG
*
70237431 CCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCG-AGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGC--ACATCTCGTAGG
* *
70237477 CCGATGCATGTCCCAGACATGTCTTACACTGGCAC-TCGTCTTAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCACATC-TCGT-AGG
* * *
70237523 CCAATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAATGT-GG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACATC-T--CGTAGG
70237571 CCGATGCATGTCCCAGACATGTCTTACACT
1 CCGATGCATGTCCCAGACATGTCTTACACT
70237601 ACCTCACACA
Statistics
Matches: 147, Mismatches: 13, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
43 2 0.01
44 16 0.11
45 13 0.09
46 64 0.44
47 28 0.19
48 23 0.16
50 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCACATCTCGTAGG
Found at i:70237550 original size:94 final size:94
Alignment explanation
Indices: 70237333--70237600 Score: 307
Period size: 94 Copynumber: 2.9 Consensus size: 94
70237323 TGGGTGCAGG
* ** * **
70237333 TGCCGATGCCATGTCCCAAACATGGTCTTACACAAGCTCTAGCATATCTATCCCGATGCCATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTA-CATATCGAGGCCGATG-CATGTC
* *
70237398 CTAGACAGGGTCTTACACTGACACATCTCGTA
64 CCAGACA-TGTCTTACACTGACACATCTCGTA
* *
70237430 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACGTCTCGAGGCCGATGCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATATCGAGGCCGATGCATGTCCC
* *
70237491 AGACATGTCTTACACTGGCAC-TCGTCTTAA
66 AGACATGTCTTACACTGACACATC-TCGT-A
* *
70237521 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCATGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACAT-ATCGAGGCCGATGCATGTCC
70237584 CAGACATGTCTTACACT
65 CAGACATGTCTTACACT
70237601 ACCTCACACA
Statistics
Matches: 148, Mismatches: 16, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
89 2 0.01
90 17 0.11
91 13 0.09
92 17 0.11
93 16 0.11
94 61 0.41
95 15 0.10
96 7 0.05
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (94 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATATCGAGGCCGATGCATGTCCC
AGACATGTCTTACACTGACACATCTCGTA
Found at i:70243131 original size:40 final size:40
Alignment explanation
Indices: 70243067--70243143 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
70243057 ACTATGTTTG
*
70243067 GCACTCAATGTGCGATTTGAAATAGCTTCGGCTATATAAA
1 GCACTCAATGTGCGAATTGAAATAGCTTCGGCTATATAAA
* * *
70243107 GCACTCAGTGTGTGAATTGGAATAGCTTCGGCTATAT
1 GCACTCAATGTGCGAATTGAAATAGCTTCGGCTATAT
70243144 GTGGCATTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (40 bp):
GCACTCAATGTGCGAATTGAAATAGCTTCGGCTATATAAA
Found at i:70261914 original size:48 final size:48
Alignment explanation
Indices: 70261849--70262291 Score: 737
Period size: 48 Copynumber: 9.2 Consensus size: 48
70261839 GCTGAAATTG
* *
70261849 ATATATGAGATATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
* *
70261897 ATATATGAGATATGTATATGGGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
70261945 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
70261993 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-AT
70262043 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
* *
70262091 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
*
70262139 ATATATGAGATATGTATATGTGGT-AAG-CGAATGGCTAATGTGAAAT
1 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
* *
70262185 ACATATGAGATATGTATATGTGGTAAAGCCGAATGGTTAGTGTGAAAT
1 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
* *
70262233 ATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
* *
70262281 ATGTAGGAGAT
1 ATATATGAGAT
70262292 GTGTGTATAT
Statistics
Matches: 377, Mismatches: 14, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
46 42 0.11
47 6 0.02
48 279 0.74
49 4 0.01
50 46 0.12
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
Found at i:70264091 original size:30 final size:30
Alignment explanation
Indices: 70264055--70264114 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
70264045 TTCTCGAGCC
70264055 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
* *
70264085 TAGGGGCAAAAGTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
70264115 CGTATTAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGCAAAAGTT
Found at i:70264587 original size:46 final size:46
Alignment explanation
Indices: 70264537--70264709 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
70264527 TGGTTGAGCA
70264537 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
70264583 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
70264628 CATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
70264676 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
70264710 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:70264693 original size:93 final size:93
Alignment explanation
Indices: 70264534--70264704 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
70264524 GGATGGTTGA
* * *
70264534 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
70264599 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
70264627 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
70264692 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
70264705 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:70274782 original size:47 final size:45
Alignment explanation
Indices: 70274713--70274922 Score: 169
Period size: 46 Copynumber: 4.5 Consensus size: 45
70274703 ACTGATGCTG
* *
70274713 TGTCCCAGACATGATCTTACACTGGCTTATATCTCAAGTCGAAGCCA
1 TGTCCCAGACATGGTCTTACACTGGC-TATATCTCAAGTCGATG-CA
* * * *
70274760 TGTCCCAAACATGGTCTTACACTGACTATCATCTTATAG-CTGATGTA
1 TGTCCCAGACATGGTCTTACACTGGCTAT-ATCTCA-AGTC-GATGCA
* * *
70274807 TGTCCCAGACAT-GTCTTACACTCGCT-TACGTCTCGAGGCCGATGCA
1 TGTCCCAGACATGGTCTTACACTGGCTATA--TCTC-AAGTCGATGCA
* *
70274853 TGTCCCAGACAT-GTCTTACACTAGC-ACTAGTCTCAATGTTGATGCCA
1 TGTCCCAGACATGGTCTTACACTGGCTA-TA-TCTCAA-GTCGATG-CA
*
70274900 TGTCCTAGACATGGTCTTACACT
1 TGTCCCAGACATGGTCTTACACT
70274923 AGCTCTCACA
Statistics
Matches: 134, Mismatches: 17, Indels: 23
0.77 0.10 0.13
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 58 0.43
47 58 0.43
48 15 0.11
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.30
Consensus pattern (45 bp):
TGTCCCAGACATGGTCTTACACTGGCTATATCTCAAGTCGATGCA
Found at i:70274903 original size:93 final size:93
Alignment explanation
Indices: 70274704--70274922 Score: 223
Period size: 93 Copynumber: 2.3 Consensus size: 93
70274694 GGGTAAGATA
* * * *
70274704 CTGATGCTGTGTCCCAGACATGATCTTACACTGGCTTATATCTCAAGTCGAAGCCATGTCCCAAA
1 CTGATGC-ATGTCCCAGACATG-TCTTACACTCGCTTACATCTCAAGCCGAAGCCATGTCCCAAA
*
70274769 CATGGTCTTACACTGACTATCATCTTATAG
64 CATGGTCTTACACTGACTATCATCTAATAG
* * * * *
70274799 CTGATGTATGTCCCAGACATGTCTTACACTCGCTTACGTCTCGAGGCCGATG-CATGTCCCAGAC
1 CTGATGCATGTCCCAGACATGTCTTACACTCGCTTACATCTC-AAGCCGAAGCCATGTCCCAAAC
70274863 AT-GTCTTACACTAGCACTAGTC-TC-AAT-G
65 ATGGTCTTACACT-G-ACTA-TCATCTAATAG
* *
70274891 TTGATGCCATGTCCTAGACATGGTCTTACACT
1 CTGATG-CATGTCCCAGACAT-GTCTTACACT
70274923 AGCTCTCACA
Statistics
Matches: 105, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
92 16 0.15
93 46 0.44
94 35 0.33
95 8 0.08
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (93 bp):
CTGATGCATGTCCCAGACATGTCTTACACTCGCTTACATCTCAAGCCGAAGCCATGTCCCAAACA
TGGTCTTACACTGACTATCATCTAATAG
Found at i:70282065 original size:47 final size:46
Alignment explanation
Indices: 70281984--70282097 Score: 108
Period size: 47 Copynumber: 2.4 Consensus size: 46
70281974 GCCGATGCCT
** **
70281984 TGTCCCAGACACA-GTCTTACACTGGCTTATATCTCA-AGTTGAAGCCA
1 TGTCCCA-A-ACATGTCTTACACTAACTTATATCTCATAGCCGAAG-CA
*
70282031 TGTCCCAAACATGGTCTTACACTAAC-TATCATCTCATAGCCGACGCA
1 TGTCCCAAACAT-GTCTTACACTAACTTAT-ATCTCATAGCCGAAGCA
*
70282078 TGTCCCATACATGTCTTACA
1 TGTCCCAAACATGTCTTACA
70282098 TTAGCTCTCA
Statistics
Matches: 57, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
45 3 0.05
46 12 0.21
47 37 0.65
48 5 0.09
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (46 bp):
TGTCCCAAACATGTCTTACACTAACTTATATCTCATAGCCGAAGCA
Found at i:70297517 original size:40 final size:40
Alignment explanation
Indices: 70297437--70297653 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
70297427 TTCGGATGAC
*
70297437 ATCCGGGCTAAGTCCCGAAGGCA-TGGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTAGTGACTAT
*
70297476 ATCCGGGCTAAGTCCCAAAGGCAGTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTAGTGACTAT
* *
70297516 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTAGTGACTAT
70297556 ATCCGGGCTAAGTCCCGAAGGC-GTTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCAG-TTGTGCTAGTGACTAT
* *
70297596 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTAG-TGACTAT
*
70297636 ATCC-GGCTAAATCCCGAA
1 ATCCGGGCTAAGTCCCGAA
70297654 TGTACTTGGG
Statistics
Matches: 164, Mismatches: 10, Indels: 8
0.90 0.05 0.04
Matches are distributed among these distances:
39 35 0.21
40 127 0.77
41 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTAGTGACTAT
Found at i:70299937 original size:230 final size:230
Alignment explanation
Indices: 70299534--70299994 Score: 922
Period size: 230 Copynumber: 2.0 Consensus size: 230
70299524 AAAATCGAGG
70299534 GCGTATTGGTACGTGTAGACAAATTTATCTTTCCTACTGACTTTGTGATTCTAGACTTTGAAGCA
1 GCGTATTGGTACGTGTAGACAAATTTATCTTTCCTACTGACTTTGTGATTCTAGACTTTGAAGCA
70299599 GACAAAGAGGTGCCAATCATCCTACTAAGACTATTCTCAGCAATCGAAAGGACCCTTATTGATGT
66 GACAAAGAGGTGCCAATCATCCTACTAAGACTATTCTCAGCAATCGAAAGGACCCTTATTGATGT
70299664 GCAGAAGGGCAAGCTTACTATGCGTGTTCAGGATGATCAAGTAACATTTGACATTTTTAAGTCTC
131 GCAGAAGGGCAAGCTTACTATGCGTGTTCAGGATGATCAAGTAACATTTGACATTTTTAAGTCTC
70299729 TACGATTTCTTGACACAATTGATGATTGTTCTACA
196 TACGATTTCTTGACACAATTGATGATTGTTCTACA
70299764 GCGTATTGGTACGTGTAGACAAATTTATCTTTCCTACTGACTTTGTGATTCTAGACTTTGAAGCA
1 GCGTATTGGTACGTGTAGACAAATTTATCTTTCCTACTGACTTTGTGATTCTAGACTTTGAAGCA
70299829 GACAAAGAGGTGCCAATCATCCTACTAAGACTATTCTCAGCAATCGAAAGGACCCTTATTGATGT
66 GACAAAGAGGTGCCAATCATCCTACTAAGACTATTCTCAGCAATCGAAAGGACCCTTATTGATGT
70299894 GCAGAAGGGCAAGCTTACTATGCGTGTTCAGGATGATCAAGTAACATTTGACATTTTTAAGTCTC
131 GCAGAAGGGCAAGCTTACTATGCGTGTTCAGGATGATCAAGTAACATTTGACATTTTTAAGTCTC
70299959 TACGATTTCTTGACACAATTGATGATTGTTCTACA
196 TACGATTTCTTGACACAATTGATGATTGTTCTACA
70299994 G
1 G
70299995 TGTCCAATTT
Statistics
Matches: 231, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
230 231 1.00
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.33
Consensus pattern (230 bp):
GCGTATTGGTACGTGTAGACAAATTTATCTTTCCTACTGACTTTGTGATTCTAGACTTTGAAGCA
GACAAAGAGGTGCCAATCATCCTACTAAGACTATTCTCAGCAATCGAAAGGACCCTTATTGATGT
GCAGAAGGGCAAGCTTACTATGCGTGTTCAGGATGATCAAGTAACATTTGACATTTTTAAGTCTC
TACGATTTCTTGACACAATTGATGATTGTTCTACA
Found at i:70311602 original size:38 final size:38
Alignment explanation
Indices: 70311559--70311751 Score: 248
Period size: 38 Copynumber: 5.1 Consensus size: 38
70311549 ATGATATTTG
* ** *
70311559 TATCCGGCTTAAAGACCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGGTTAAATCCCGCAGGCT-TCGTGCTGGAATTA
*
70311597 TATCCGGGGTAAATCCCGCAGGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
70311635 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
* *
70311673 TATCCGGGTTAATTCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* **
70311711 TATCCGGGTTAAATCCCGCAGGCTTAGTGCTGCTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
70311749 TAT
1 TAT
70311752 TCGAGCCTTT
Statistics
Matches: 141, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
37 2 0.01
38 137 0.97
39 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
Found at i:70311813 original size:45 final size:45
Alignment explanation
Indices: 70311749--70311878 Score: 167
Period size: 45 Copynumber: 2.9 Consensus size: 45
70311739 GCTGCTATTA
*
70311749 TATTCGAGCCTTTGAGCCTAGCAGACTAGT-ATGCCGATGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGACTA-TAATGCCGATGAGACAC
* * * *
70311794 TATTCGGGCCTTTGGGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGACTATAATGCCGATGAGACAC
70311839 TATTCGGG-CTTTCGAGCCTAGCAGGA-TATAATGCCGATGA
1 TATTCGGGCCTTT-GAGCCTAGCA-GACTATAATGCCGATGA
70311879 AATGATAATC
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
44 5 0.07
45 68 0.92
46 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGACTATAATGCCGATGAGACAC
Found at i:70317732 original size:20 final size:20
Alignment explanation
Indices: 70317707--70317746 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
70317697 TCATATTCCC
70317707 CTGTTTGAGCTCTAAAAATT
1 CTGTTTGAGCTCTAAAAATT
*
70317727 CTGTTTGAGCTTTAAAAATT
1 CTGTTTGAGCTCTAAAAATT
70317747 ATTTCTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.42
Consensus pattern (20 bp):
CTGTTTGAGCTCTAAAAATT
Found at i:70319976 original size:57 final size:58
Alignment explanation
Indices: 70319878--70320019 Score: 146
Period size: 57 Copynumber: 2.5 Consensus size: 58
70319868 TATCGTATTA
* * * * *
70319878 CAGGATTACCAATCTAGGCTAAATCCTTTATGTAACGTATGCTT-AGAAGAGCTCA-AT
1 CAGGATTACCAGTCCAGGCTAAATCCTCTATGTAACATATGCTTGAG-AGAGATCATAT
* * * *
70319935 TAGGATTATCAGTCCAGGCTAAATCCTACT-TGTAGCATATGCTTGAGAGAGATTATAT
1 CAGGATTACCAGTCCAGGCTAAATCCT-CTATGTAACATATGCTTGAGAGAGATCATAT
* *
70319993 CAAGATTACCCGTCCAGGCTAAATCCT
1 CAGGATTACCAGTCCAGGCTAAATCCT
70320020 TTCTATAACA
Statistics
Matches: 69, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
57 41 0.59
58 28 0.41
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (58 bp):
CAGGATTACCAGTCCAGGCTAAATCCTCTATGTAACATATGCTTGAGAGAGATCATAT
Found at i:70325213 original size:48 final size:48
Alignment explanation
Indices: 70325157--70325343 Score: 223
Period size: 48 Copynumber: 3.7 Consensus size: 48
70325147 ACGATGCCTC
*
70325157 ATGCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTCACATAACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* * *
70325205 ATGCCGATGTCATGTCCCAGACATAGTCTTACACTAGCTCACGTAAGCTCACGTAACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTT--AC-A-CT---G---GCTCACATAACA
*
70325263 ATGCCGATGCCATGTCCCAGACATGGTCTTATACTGGCTCACATAACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
*
70325311 ATGCCGATACCATGT-CCAGACATGGTCTTACAC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACAC
70325344 CAATGTCATG
Statistics
Matches: 119, Mismatches: 10, Indels: 21
0.79 0.07 0.14
Matches are distributed among these distances:
47 17 0.14
48 52 0.44
50 2 0.02
51 2 0.02
52 2 0.02
54 2 0.02
55 2 0.02
56 1 0.01
58 39 0.33
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
Found at i:70325262 original size:58 final size:58
Alignment explanation
Indices: 70325193--70325343 Score: 180
Period size: 58 Copynumber: 2.8 Consensus size: 58
70325183 TCTTACACTG
*
70325193 GCTCACATAACAATGCCGATGTCATGTCCCAGACATAGTCTTACACTAGCTCACGTAA
1 GCTCACATAACAATGCCGATGCCATGTCCCAGACATAGTCTTACACTAGCTCACGTAA
* *
70325251 GCTCACGTAACAATGCCGATGCCATGTCCCAGACATGGTCTT--A-TA-CT---G---
1 GCTCACATAACAATGCCGATGCCATGTCCCAGACATAGTCTTACACTAGCTCACGTAA
* *
70325299 GCTCACATAACAATGCCGATACCATGT-CCAGACATGGTCTTACAC
1 GCTCACATAACAATGCCGATGCCATGTCCCAGACATAGTCTTACAC
70325344 CAATGTCATG
Statistics
Matches: 85, Mismatches: 5, Indels: 14
0.82 0.05 0.13
Matches are distributed among these distances:
47 14 0.16
48 25 0.29
49 1 0.01
51 1 0.01
54 2 0.02
55 2 0.02
56 1 0.01
58 39 0.46
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (58 bp):
GCTCACATAACAATGCCGATGCCATGTCCCAGACATAGTCTTACACTAGCTCACGTAA
Found at i:70325381 original size:29 final size:28
Alignment explanation
Indices: 70325321--70325383 Score: 74
Period size: 30 Copynumber: 2.2 Consensus size: 28
70325311 ATGCCGATAC
* *
70325321 CATGTCCAGACATGGTCTTACACCAATGT
1 CATGTCCAGACATAGTCTTACACC-AGGT
70325350 CATGTCCCAGACATAGTCTTACACC-GGCT
1 CATGT-CCAGACATAGTCTTACACCAGG-T
70325379 CATGT
1 CATGT
70325384 AACAATGCTG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 1 0.03
29 11 0.37
30 18 0.60
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.27
Consensus pattern (28 bp):
CATGTCCAGACATAGTCTTACACCAGGT
Found at i:70325401 original size:77 final size:78
Alignment explanation
Indices: 70325273--70325421 Score: 210
Period size: 77 Copynumber: 1.9 Consensus size: 78
70325263 ATGCCGATGC
* * * *
70325273 CATGTCCCAGACATGGTCTTATACTGGCTCACATAACAATGCCGATACCATGT-CCAGACATGGT
1 CATGTCCCAGACATAGTCTTACACCGGCTCACATAACAATGCCGATACCATGTCCCAAACATGGT
*
70325337 CTTACACCAATGT
66 ATTACACCAATGT
** * *
70325350 CATGTCCCAGACATAGTCTTACACCGGCTCATGTAACAATGCTGATGCCATGTCCCAAACATGGT
1 CATGTCCCAGACATAGTCTTACACCGGCTCACATAACAATGCCGATACCATGTCCCAAACATGGT
70325415 ATTACAC
66 ATTACAC
70325422 GGTTACACAT
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
77 46 0.74
78 16 0.26
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.26
Consensus pattern (78 bp):
CATGTCCCAGACATAGTCTTACACCGGCTCACATAACAATGCCGATACCATGTCCCAAACATGGT
ATTACACCAATGT
Found at i:70327366 original size:23 final size:25
Alignment explanation
Indices: 70327330--70327375 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
70327320 AAGAATATTT
*
70327330 TATATATATATTTTCTTTATTTATG
1 TATATATATATTTTCTTGATTTATG
70327355 TATAT-TAT-TTTTCTTGATTTA
1 TATATATATATTTTCTTGATTTA
70327376 CGAGTTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 12 0.60
24 3 0.15
25 5 0.25
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.65
Consensus pattern (25 bp):
TATATATATATTTTCTTGATTTATG
Found at i:70328536 original size:20 final size:20
Alignment explanation
Indices: 70328513--70328558 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 20
70328503 AAATAAATTA
70328513 AAAAATGTAAAAATGTGAGT
1 AAAAATGTAAAAATGTGAGT
70328533 -AAAATGTAAAAATGTGAGT
1 AAAAATGTAAAAATGTGAGT
70328552 AAAAATG
1 AAAAATG
70328559 GACTTATCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 19 0.76
20 6 0.24
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.24
Consensus pattern (20 bp):
AAAAATGTAAAAATGTGAGT
Found at i:70329218 original size:19 final size:19
Alignment explanation
Indices: 70329190--70329253 Score: 53
Period size: 18 Copynumber: 3.5 Consensus size: 19
70329180 TTATTAACTT
*
70329190 TTTATATATTTTTAAATTA
1 TTTATTTATTTTTAAATTA
*
70329209 TTTATTTA-TTTGAATATT-
1 TTTATTTATTTTTAA-ATTA
* *
70329227 TTTA-TAAATTTTAAATTA
1 TTTATTTATTTTTAAATTA
*
70329245 TTTTTTTAT
1 TTTATTTAT
70329254 GACACATATA
Statistics
Matches: 34, Mismatches: 7, Indels: 8
0.69 0.14 0.16
Matches are distributed among these distances:
17 5 0.15
18 17 0.50
19 12 0.35
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.66
Consensus pattern (19 bp):
TTTATTTATTTTTAAATTA
Found at i:70332080 original size:150 final size:150
Alignment explanation
Indices: 70331809--70332109 Score: 557
Period size: 150 Copynumber: 2.0 Consensus size: 150
70331799 ACAGTACCAA
70331809 TACCAATTACCTTACTAGATGAATAATTTCCCATGCGCACAACTTCACCTTCAACTGAACTGTAT
1 TACCAATTACCTTACTAGATGAATAATTTCCCATGCGCACAACTTCACCTTCAACTGAACTGTAT
70331874 GTGAAGAACTATTCTCTATTGGGACACATGTGGAAAGAACATCCCGAATCTAGGATCCACTCGAA
66 GTGAAGAACTATTCTCTATTGGGACACATGTGGAAAGAACATCCCGAATCTAGGATCCACTCGAA
*
70331939 TGTGAGCTTAGAGTTATCGC
131 CGTGAGCTTAGAGTTATCGC
* *
70331959 TACCAATTACCTTGCTAGATGAATAATTTCCCATGCGCACAACTTCACTTTCAACTGAACTGTAT
1 TACCAATTACCTTACTAGATGAATAATTTCCCATGCGCACAACTTCACCTTCAACTGAACTGTAT
*
70332024 GTGAAGAACTATTCTCTATTGGGACACATGTGGAAAGAACATCCCGAATCTAGGATCCACTCGGA
66 GTGAAGAACTATTCTCTATTGGGACACATGTGGAAAGAACATCCCGAATCTAGGATCCACTCGAA
*
70332089 CGTGAGCTTGGAGTTATCGC
131 CGTGAGCTTAGAGTTATCGC
70332109 T
1 T
70332110 CGTTAACACT
Statistics
Matches: 146, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
150 146 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.28
Consensus pattern (150 bp):
TACCAATTACCTTACTAGATGAATAATTTCCCATGCGCACAACTTCACCTTCAACTGAACTGTAT
GTGAAGAACTATTCTCTATTGGGACACATGTGGAAAGAACATCCCGAATCTAGGATCCACTCGAA
CGTGAGCTTAGAGTTATCGC
Found at i:70339118 original size:25 final size:25
Alignment explanation
Indices: 70339086--70339136 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
70339076 AGGGACTTGG
70339086 ATGTTTTTGTTTCATCGGATTCATT
1 ATGTTTTTGTTTCATCGGATTCATT
*
70339111 ATGTTTTTGTTTCATTGGATTCATT
1 ATGTTTTTGTTTCATCGGATTCATT
70339136 A
1 A
70339137 AGTTCTATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.18, C:0.10, G:0.16, T:0.57
Consensus pattern (25 bp):
ATGTTTTTGTTTCATCGGATTCATT
Found at i:70343285 original size:16 final size:16
Alignment explanation
Indices: 70343264--70343305 Score: 84
Period size: 16 Copynumber: 2.6 Consensus size: 16
70343254 TTTTATGTAG
70343264 AAATTCTGAATTTAAA
1 AAATTCTGAATTTAAA
70343280 AAATTCTGAATTTAAA
1 AAATTCTGAATTTAAA
70343296 AAATTCTGAA
1 AAATTCTGAA
70343306 ATAACTTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (16 bp):
AAATTCTGAATTTAAA
Found at i:70344443 original size:51 final size:51
Alignment explanation
Indices: 70344360--70344476 Score: 191
Period size: 51 Copynumber: 2.3 Consensus size: 51
70344350 ACTTCTGATC
70344360 AGTGACAAGTGATAAGTAGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTAGTAGCTTTAGCTACACTTATCTGATCAGTGACA
* * *
70344411 AGTGATAAGTGATAAGTGGTAGCTTCT-TCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTAGTAGCTT-TAGCTACACTTATCTGATCAGTGACA
70344462 AGTGACAAGTGATAA
1 AGTGACAAGTGATAA
70344477 ATGTGATCAG
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
51 60 0.98
52 1 0.02
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTAGTAGCTTTAGCTACACTTATCTGATCAGTGACA
Found at i:70347604 original size:17 final size:18
Alignment explanation
Indices: 70347571--70347604 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
70347561 AAACTAATTT
70347571 TCTCTTATTTATTTTCTA
1 TCTCTTATTTATTTTCTA
*
70347589 TCTCTTCTTT-TTTTCT
1 TCTCTTATTTATTTTCT
70347605 TTGAAAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.09, C:0.21, G:0.00, T:0.71
Consensus pattern (18 bp):
TCTCTTATTTATTTTCTA
Found at i:70352962 original size:48 final size:45
Alignment explanation
Indices: 70352862--70353030 Score: 162
Period size: 48 Copynumber: 3.6 Consensus size: 45
70352852 AACAAGAGCT
* *
70352862 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCTACGGGATGTGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGC-ACGAGAGGTGTC
*
70352906 AGTGTAAGACCATGTCTCGGACATGGCATCGGCACGTATAGAGGTGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCACG---AGAGGTGTC
* * * * *
70352954 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATAGAGATGTGAGAGC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCA-CGAGA-G-GTG-TC
*
70353003 TAGTGTAAGACCATGGCTAGGACATGGC
1 -AGTGTAAGACCATGTCTAGGACATGGC
70353031 GTCGACCTCG
Statistics
Matches: 105, Mismatches: 10, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
44 9 0.09
45 16 0.15
46 11 0.10
47 1 0.01
48 41 0.39
49 2 0.02
50 25 0.24
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGGCACGAGAGGTGTC
Found at i:70358261 original size:40 final size:40
Alignment explanation
Indices: 70358206--70358288 Score: 157
Period size: 40 Copynumber: 2.1 Consensus size: 40
70358196 TACACTGGTT
*
70358206 CACATATCAAAGTCGATGCCATGTCTCAGACATTATCTTA
1 CACATATCAAAGTCGATGCCATGTCCCAGACATTATCTTA
70358246 CACATATCAAAGTCGATGCCATGTCCCAGACATTATCTTA
1 CACATATCAAAGTCGATGCCATGTCCCAGACATTATCTTA
70358286 CAC
1 CAC
70358289 TGACTCTCGT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.28
Consensus pattern (40 bp):
CACATATCAAAGTCGATGCCATGTCCCAGACATTATCTTA
Found at i:70358432 original size:95 final size:98
Alignment explanation
Indices: 70358259--70358484 Score: 316
Period size: 95 Copynumber: 2.3 Consensus size: 98
70358249 ATATCAAAGT
** * *
70358259 CGATGCCATGTCCCAGACATTATCTTACACTGACTCTCGTATATCGAGGCTGATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-CACG-ATATCGAGGCCGATGCCATGTCCCA
* *
70358324 TACATGGTCTTACACTAGCTCTCATCTATCG-GTGC
64 AACATGGTCTTACACTAGCTCTCATATATCGAG-GC
*
70358359 CGATGCCATGTCCCAAACATGGTCTTACACTGA-CAC-ATATC-AGGCCGATGCCATGTCCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACCACGATATCGAGGCCGATGCCATGTCCCAAA
*
70358421 CATGGTCTTACACTAGCTCTCATATCTCGAGGC
66 CATGGTCTTACACTAGCTCTCATATATCGAGGC
*
70358454 CGATGCCATGTCCCAGACATGGTCTTGCACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
70358485 AGCTCTCATA
Statistics
Matches: 115, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
95 77 0.67
96 6 0.05
98 2 0.02
100 30 0.26
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (98 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACCACGATATCGAGGCCGATGCCATGTCCCAAA
CATGGTCTTACACTAGCTCTCATATATCGAGGC
Found at i:70358498 original size:50 final size:50
Alignment explanation
Indices: 70358259--70358495 Score: 299
Period size: 50 Copynumber: 4.8 Consensus size: 50
70358249 ATATCAAAGT
* ** *
70358259 CGATGCCATGTCCCAGACATTATCTTACACT-GACTCTCGTATATCGAGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAG-CTCTCATATATCGAGGC
* * *
70358309 TGATGCCATGTCCCATACATGGTCTTACACTAGCTCTCATCTATCG-GTGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATCGAG-GC
* *
70358359 CGATGCCATGTCCCAAACATGGTCTTACACT-G---ACACATATC-AGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATCGAGGC
*
70358404 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCTCGAGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATCGAGGC
* *
70358454 CGATGCCATGTCCCAGACATGGTCTTGCACTAGCTCTCATAT
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAT
70358496 CTCCCTAGCA
Statistics
Matches: 163, Mismatches: 16, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
45 33 0.20
46 8 0.05
49 8 0.05
50 113 0.69
51 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (50 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATCGAGGC
Found at i:70360543 original size:37 final size:38
Alignment explanation
Indices: 70360475--70360549 Score: 134
Period size: 37 Copynumber: 2.0 Consensus size: 38
70360465 CAAAAAGGGA
*
70360475 AGTCTTACAAATTATCATTTTTTGGATTCCACTACCAT
1 AGTCATACAAATTATCATTTTTTGGATTCCACTACCAT
70360513 AGTCATACAAATTATCA-TTTTTGGATTCCACTACCAT
1 AGTCATACAAATTATCATTTTTTGGATTCCACTACCAT
70360550 GTATCATCAT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 20 0.56
38 16 0.44
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (38 bp):
AGTCATACAAATTATCATTTTTTGGATTCCACTACCAT
Found at i:70367581 original size:5 final size:5
Alignment explanation
Indices: 70367571--70367609 Score: 53
Period size: 5 Copynumber: 7.8 Consensus size: 5
70367561 GTTGATAGAG
*
70367571 AAAAT AAAAT AAACA- AAAAT ATAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAA-AT AAAAT AAAAT AAAAT AAAAT AAAA
70367610 ACAGATTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
4 1 0.03
5 28 0.93
6 1 0.03
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:70370010 original size:6 final size:7
Alignment explanation
Indices: 70369990--70370016 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
70369980 CAATTTGTAA
70369990 TTCTTTT
1 TTCTTTT
70369997 TTCTTTT
1 TTCTTTT
70370004 TTCTTTT
1 TTCTTTT
70370011 TTCTTT
1 TTCTTT
70370017 CTGCAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (7 bp):
TTCTTTT
Found at i:70373984 original size:13 final size:13
Alignment explanation
Indices: 70373966--70373991 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70373956 GAGTTTTTCC
70373966 ATGTTAAATTTGT
1 ATGTTAAATTTGT
70373979 ATGTTAAATTTGT
1 ATGTTAAATTTGT
70373992 TTATTCAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
ATGTTAAATTTGT
Found at i:70378397 original size:6 final size:7
Alignment explanation
Indices: 70378380--70378404 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
70378370 CCAATTTTTC
70378380 AAAAAAG
1 AAAAAAG
70378387 AAAAAAG
1 AAAAAAG
70378394 AAAAAAG
1 AAAAAAG
70378401 AAAA
1 AAAA
70378405 TTCAACCTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:70379018 original size:3 final size:3
Alignment explanation
Indices: 70379010--70379038 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
70379000 CTTCAATAAC
70379010 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
70379039 GCCTTTCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:70386381 original size:18 final size:19
Alignment explanation
Indices: 70386348--70386385 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
70386338 AGACTCCAGG
*
70386348 TCTGATTCTTTTCAATCAT
1 TCTGATTCTCTTCAATCAT
70386367 TCTGATT-TCTTCAATCAT
1 TCTGATTCTCTTCAATCAT
70386385 T
1 T
70386386 GCTTGCTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.21, C:0.21, G:0.05, T:0.53
Consensus pattern (19 bp):
TCTGATTCTCTTCAATCAT
Found at i:70395513 original size:13 final size:13
Alignment explanation
Indices: 70395492--70395525 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
70395482 AAGACAAATC
*
70395492 CTGGTATGTTACA
1 CTGGCATGTTACA
70395505 CTGGCATGTTACA
1 CTGGCATGTTACA
70395518 CTGGCATG
1 CTGGCATG
70395526 CAATTAAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (13 bp):
CTGGCATGTTACA
Found at i:70396619 original size:21 final size:21
Alignment explanation
Indices: 70396571--70396619 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
70396561 ATAAATTTTT
*
70396571 TATAATATATAACTTTATAAA
1 TATAATATATAACTTTACAAA
*
70396592 AATTAATATA-AACTTTACAATA
1 TA-TAATATATAACTTTACAA-A
70396614 TATAAT
1 TATAAT
70396620 CTTTATAAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (21 bp):
TATAATATATAACTTTACAAA
Found at i:70398950 original size:28 final size:28
Alignment explanation
Indices: 70398912--70399093 Score: 294
Period size: 28 Copynumber: 6.5 Consensus size: 28
70398902 TAAATTGTAC
*
70398912 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
70398940 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
70398968 AGCACTAAGTGTGCGAATTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
70398996 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
70399024 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
70399052 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
* *
70399079 AACACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70399094 GACTTAATAT
Statistics
Matches: 148, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
27 23 0.16
28 125 0.84
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:70407228 original size:28 final size:28
Alignment explanation
Indices: 70407190--70407371 Score: 303
Period size: 28 Copynumber: 6.5 Consensus size: 28
70407180 TAAATTGTAC
*
70407190 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
70407218 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
70407246 AGCACTAAGTGTGCGAATTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
70407274 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
70407302 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
70407330 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
70407357 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70407372 GACTTAATAT
Statistics
Matches: 149, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 24 0.16
28 125 0.84
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:70422877 original size:28 final size:28
Alignment explanation
Indices: 70422839--70423020 Score: 303
Period size: 28 Copynumber: 6.5 Consensus size: 28
70422829 TAAATTGTAC
*
70422839 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
70422867 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
70422895 AGCACTAAGTGTGCGAATTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
70422923 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
70422951 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
70422979 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
70423006 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70423021 GACTTAATAT
Statistics
Matches: 149, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 24 0.16
28 125 0.84
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:70428460 original size:13 final size:13
Alignment explanation
Indices: 70428442--70428492 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
70428432 AATTTGGCAA
70428442 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
70428455 TGCTTTTAAAAAG
1 TGCTTTTGAAAAG
** *
70428468 TGCGGTGGAAAAG
1 TGCTTTTGAAAAG
*
70428481 TACTTTTGAAAA
1 TGCTTTTGAAAA
70428493 ATTTAAGTGT
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.35, C:0.08, G:0.24, T:0.33
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:70428671 original size:8 final size:9
Alignment explanation
Indices: 70428653--70428700 Score: 50
Period size: 8 Copynumber: 5.6 Consensus size: 9
70428643 TATTATAACT
70428653 TATTATTAA
1 TATTATTAA
70428662 TATT-TTAATA
1 TATTATT-A-A
70428672 TATTATTAA
1 TATTATTAA
70428681 TATT-TTAA
1 TATTATTAA
70428689 TA-TA-TAA
1 TATTATTAA
70428696 TATTA
1 TATTA
70428701 ATTTTAAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
7 6 0.18
8 10 0.29
9 10 0.29
10 6 0.18
11 2 0.06
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
TATTATTAA
Found at i:70428699 original size:21 final size:19
Alignment explanation
Indices: 70428653--70428711 Score: 84
Period size: 19 Copynumber: 3.1 Consensus size: 19
70428643 TATTATAACT
70428653 TATTATTAATATTTTAATA
1 TATTATTAATATTTTAATA
70428672 TATTATTAATATTTTAATA
1 TATTATTAATATTTTAATA
*
70428691 TATAATATTAAT-TTTAAATA
1 TAT--TATTAATATTTTAATA
70428711 T
1 T
70428712 TTCTAAGTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
19 22 0.59
20 8 0.22
21 7 0.19
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
TATTATTAATATTTTAATA
Found at i:70430604 original size:26 final size:26
Alignment explanation
Indices: 70430575--70430680 Score: 70
Period size: 26 Copynumber: 4.3 Consensus size: 26
70430565 AAATAAGTAG
70430575 AACATAAATTCAATATCTAAATACCA
1 AACATAAATTCAATATCTAAATACCA
70430601 AACATAAA--CAACTAT-T-AATA--A
1 AACATAAATTCAA-TATCTAAATACCA
**
70430622 AAC-TAAATT-AA-A-CATAAATAAGTA
1 AACATAAATTCAATATC-TAAAT-ACCA
* *
70430646 GAACATAAATTCAATATCCAAAAACCA
1 -AACATAAATTCAATATCTAAATACCA
70430673 AACATAAA
1 AACATAAA
70430681 CAACTATTAA
Statistics
Matches: 62, Mismatches: 4, Indels: 28
0.66 0.04 0.30
Matches are distributed among these distances:
19 1 0.02
20 5 0.08
21 9 0.15
22 1 0.02
23 4 0.06
24 5 0.08
25 6 0.10
26 22 0.35
27 4 0.06
28 4 0.06
29 1 0.02
ACGTcount: A:0.59, C:0.16, G:0.02, T:0.23
Consensus pattern (26 bp):
AACATAAATTCAATATCTAAATACCA
Found at i:70430677 original size:41 final size:41
Alignment explanation
Indices: 70430631--70430752 Score: 102
Period size: 41 Copynumber: 3.2 Consensus size: 41
70430621 AAACTAAATT
70430631 AAACATAAATAAGTAGAACATAAATTCAATATCCAAAAACC
1 AAACATAAATAAGTAGAACATAAATTCAATATCCAAAAACC
* * ** * * **
70430672 AAACATAAACAACTATTA-ATAAA---ACTA---GATTA-C
1 AAACATAAATAAGTAGAACATAAATTCAATATCCAAAAACC
70430705 --ACATAAATAAGTAGAACATAAATTCAATATCCAAAAACC
1 AAACATAAATAAGTAGAACATAAATTCAATATCCAAAAACC
70430744 AAACATAAA
1 AAACATAAA
70430753 CAACCATTGG
Statistics
Matches: 55, Mismatches: 16, Indels: 20
0.60 0.18 0.22
Matches are distributed among these distances:
31 12 0.22
32 5 0.09
33 1 0.02
34 2 0.04
35 3 0.05
37 3 0.05
38 2 0.04
39 1 0.02
40 5 0.09
41 21 0.38
ACGTcount: A:0.59, C:0.16, G:0.04, T:0.20
Consensus pattern (41 bp):
AAACATAAATAAGTAGAACATAAATTCAATATCCAAAAACC
Found at i:70430843 original size:72 final size:72
Alignment explanation
Indices: 70430533--70430843 Score: 500
Period size: 72 Copynumber: 4.3 Consensus size: 72
70430523 AAAATCATAT
** *
70430533 ATAAACAACTATTGATAAAACTA-ATTTA-GTATAAATAAGTAGAACATAAATTCAATATCTAAA
1 ATAAACAACTATTGATAAAACTAGA-TTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
*
70430596 TACCAAAC
65 AACCAAAC
* * *
70430604 ATAAACAACTATTAATAAAACTAAATTAAACATAAATAAGTAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
70430669 ACCAAAC
66 ACCAAAC
*
70430676 ATAAACAACTATTAATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
70430741 ACCAAAC
66 ACCAAAC
* *
70430748 ATAAACAACCATTGGTAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
70430813 ACCAAAC
66 ACCAAAC
*
70430820 ATAAATAACTATTGATAAAACTAG
1 ATAAACAACTATTGATAAAACTAG
70430844 TTTAGCATTT
Statistics
Matches: 225, Mismatches: 13, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
71 25 0.11
72 200 0.89
ACGTcount: A:0.56, C:0.15, G:0.05, T:0.24
Consensus pattern (72 bp):
ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:70431293 original size:18 final size:18
Alignment explanation
Indices: 70431272--70431355 Score: 150
Period size: 18 Copynumber: 4.7 Consensus size: 18
70431262 TCCATCAATT
70431272 TGAACATCATTTAAAATG
1 TGAACATCATTTAAAATG
*
70431290 TGAACATCATTTGAAATG
1 TGAACATCATTTAAAATG
*
70431308 TGAACATTATTTAAAATG
1 TGAACATCATTTAAAATG
70431326 TGAACATCATTTAAAATG
1 TGAACATCATTTAAAATG
70431344 TGAACATCATTT
1 TGAACATCATTT
70431356 CTCACATTTT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 62 1.00
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.36
Consensus pattern (18 bp):
TGAACATCATTTAAAATG
Found at i:70432310 original size:21 final size:21
Alignment explanation
Indices: 70432284--70432353 Score: 79
Period size: 21 Copynumber: 3.3 Consensus size: 21
70432274 AGATAATATA
70432284 TATAAATATATATGGTCATAG
1 TATAAATATATATGGTCATAG
* **
70432305 TATAAAAATATTACAGTCAATA-
1 TATAAATATA-TATGGTC-ATAG
70432327 TATAAATATATATGGTCATAG
1 TATAAATATATATGGTCATAG
*
70432348 TCTAAA
1 TATAAA
70432354 CCAATGGAGA
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
20 3 0.08
21 19 0.49
22 14 0.36
23 3 0.08
ACGTcount: A:0.47, C:0.07, G:0.10, T:0.36
Consensus pattern (21 bp):
TATAAATATATATGGTCATAG
Found at i:70432330 original size:22 final size:23
Alignment explanation
Indices: 70432278--70432339 Score: 65
Period size: 22 Copynumber: 2.7 Consensus size: 23
70432268 CGCATAAGAT
* **
70432278 AATATATATAAATATATATGGTC
1 AATATATAAAAATATATACAGTC
70432301 -ATAGTATAAAAATAT-TACAGTC
1 AATA-TATAAAAATATATACAGTC
*
70432323 AATATATAAATATATAT
1 AATATATAAAAATATAT
70432340 GGTCATAGTC
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
22 18 0.56
23 14 0.44
ACGTcount: A:0.52, C:0.05, G:0.06, T:0.37
Consensus pattern (23 bp):
AATATATAAAAATATATACAGTC
Found at i:70434422 original size:21 final size:21
Alignment explanation
Indices: 70434398--70434437 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
70434388 AGGAACAAAG
70434398 CAGAGAAGAAAGAGTAAAGTT
1 CAGAGAAGAAAGAGTAAAGTT
70434419 CAGAGAAGAAAGAGTAAAG
1 CAGAGAAGAAAGAGTAAAG
70434438 GCAAAGAAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.55, C:0.05, G:0.30, T:0.10
Consensus pattern (21 bp):
CAGAGAAGAAAGAGTAAAGTT
Found at i:70435016 original size:19 final size:19
Alignment explanation
Indices: 70434994--70435030 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
70434984 TGTAAATAGA
70434994 TTAAAA-TTATTTTAAAATT
1 TTAAAATTTA-TTTAAAATT
70435013 TTAAAATTTATTTAAAAT
1 TTAAAATTTATTTAAAAT
70435031 CATAAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TTAAAATTTATTTAAAATT
Found at i:70435036 original size:19 final size:19
Alignment explanation
Indices: 70434995--70435036 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
70434985 GTAAATAGAT
**
70434995 TAAAATTATTTTAAAATTT
1 TAAAATTATTTTAAAATCA
70435014 TAAAATT-TATTTAAAATCA
1 TAAAATTAT-TTTAAAATCA
70435033 TAAA
1 TAAA
70435037 TAATAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 1 0.05
19 19 0.95
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (19 bp):
TAAAATTATTTTAAAATCA
Found at i:70435074 original size:24 final size:25
Alignment explanation
Indices: 70435013--70435077 Score: 71
Period size: 24 Copynumber: 2.6 Consensus size: 25
70435003 TTTTAAAATT
* *
70435013 TTAAAATTTATTTAAAATCATAAATAA
1 TTAAAAATT-TTT-AAATAATAAATAA
*
70435040 -TAAAAAATTTTAAATAATAAA-AA
1 TTAAAAATTTTTAAATAATAAATAA
70435063 TTAAAAATTTTTAAA
1 TTAAAAATTTTTAAA
70435078 ATTGTAAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
23 2 0.06
24 22 0.67
25 3 0.09
26 6 0.18
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (25 bp):
TTAAAAATTTTTAAATAATAAATAA
Found at i:70435475 original size:16 final size:16
Alignment explanation
Indices: 70435443--70435498 Score: 64
Period size: 15 Copynumber: 3.6 Consensus size: 16
70435433 ATATTGAATT
70435443 ATTTATAAAAA-AT-AA
1 ATTT-TAAAAATATAAA
70435458 ATTTTAAAAATATAAA
1 ATTTTAAAAATATAAA
*
70435474 ATTTTAAAAAT-GAAA
1 ATTTTAAAAATATAAA
*
70435489 ATTATAAAAA
1 ATTTTAAAAA
70435499 AAAAGAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.16
15 18 0.49
16 13 0.35
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (16 bp):
ATTTTAAAAATATAAA
Found at i:70437265 original size:202 final size:202
Alignment explanation
Indices: 70436824--70437307 Score: 657
Period size: 202 Copynumber: 2.4 Consensus size: 202
70436814 AGTAAATGGA
* * * * * **
70436824 AGGTTTGGATTTTTCTAAAGTCATGGTCTACCATGTGCATACAAATAGCCTTAGGTTTAAGGTTA
1 AGGTTTGGATTTTTCTAAAGTTATTGTCTACCATGTGCATACTAATAGCCTTAGG--AAAAGACA
* * * * *
70436889 AATCAGTTCCTATTTGACAAATCAGTTTTTATTGAATTATTCAAAATTGTGTATGTGATTGAATT
64 AATCAGTTCCTATTTGACAAATCAATTTGTATTGAATTATTCAAAACTATGTATGTCATTGAATT
* * *
70436954 ATTCAAATACGATTCAAAACATTTTTTTAAATGTTGGTTCAAATATGATTATTGTTTATATCAAA
129 ATTCAAATACGATCCAAAACATTTTTTTAAATGTTGGTTCAAATAGGATCATTGTTTATATCAAA
*
70437019 TTGAATTGT
194 TTGAATTGC
* * *
70437028 AGGTTTAGATTTTTCT-AAGTTGTTGTCTACCATGTGCATACTACTAGCCTTAGGAAATAGACAA
1 AGGTTTGGATTTTTCTAAAGTTATTGTCTACCATGTGCATACTAATAGCCTTAGGAAA-AGACAA
* * *
70437092 ATTAGTTTCTATTTGACAAATCAATTTGTATTGAATTATTCGAAACTATGTATGTCATTGAATTA
65 ATCAGTTCCTATTTGACAAATCAATTTGTATTGAATTATTCAAAACTATGTATGTCATTGAATTA
* * * *
70437157 TTTAAATATGATCCAAAACA-TTTTTTAAATGTTGGTTCAAATAGGATCGTTGTTTGTATCAAAT
130 TTCAAATACGATCCAAAACATTTTTTTAAATGTTGGTTCAAATAGGATCATTGTTTATATCAAAT
70437221 TGAATTGC
195 TGAATTGC
* *
70437229 AGGTTTGGATTTTTCTAAAGTTATTGTCTGCCATGTGCATACTAATAACCTTAGGAAAGAGACAA
1 AGGTTTGGATTTTTCTAAAGTTATTGTCTACCATGTGCATACTAATAGCCTTAGGAAA-AGACAA
*
70437294 ATCAATTCCTATTT
65 ATCAGTTCCTATTT
70437308 TTATGACTAA
Statistics
Matches: 243, Mismatches: 35, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
201 64 0.26
202 131 0.54
203 33 0.14
204 15 0.06
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (202 bp):
AGGTTTGGATTTTTCTAAAGTTATTGTCTACCATGTGCATACTAATAGCCTTAGGAAAAGACAAA
TCAGTTCCTATTTGACAAATCAATTTGTATTGAATTATTCAAAACTATGTATGTCATTGAATTAT
TCAAATACGATCCAAAACATTTTTTTAAATGTTGGTTCAAATAGGATCATTGTTTATATCAAATT
GAATTGC
Found at i:70437534 original size:46 final size:45
Alignment explanation
Indices: 70437476--70437637 Score: 150
Period size: 46 Copynumber: 3.6 Consensus size: 45
70437466 GATACTGTTT
*
70437476 TGGATTTATTTGTATTAAATTGTTTGGTTATTGTACATGACAAACA
1 TGGATTTCTTTGTATTAAATTGTTTGGTTATTGTACATGACAAA-A
* ** * ** *
70437522 TGGGTTTCTTTGTATTTTATTGTCT-GCCATGTGT--ATGACAGAA
1 TGGATTTCTTTGTATTAAATTGTTTGGTTAT-TGTACATGACAAAA
* *
70437565 TGGATTTGTTTGTATTAAATTGTTTGGTTATTGTACATGATAGAAA
1 TGGATTTCTTTGTATTAAATTGTTTGGTTATTGTACATGACA-AAA
* * * *
70437611 TTGATTTATTTGTCTTGAATTGTTTGG
1 TGGATTTCTTTGTATTAAATTGTTTGG
70437638 CTATCTCTGT
Statistics
Matches: 90, Mismatches: 21, Indels: 10
0.74 0.17 0.08
Matches are distributed among these distances:
43 24 0.27
44 10 0.11
45 8 0.09
46 48 0.53
ACGTcount: A:0.24, C:0.06, G:0.21, T:0.49
Consensus pattern (45 bp):
TGGATTTCTTTGTATTAAATTGTTTGGTTATTGTACATGACAAAA
Found at i:70437714 original size:30 final size:29
Alignment explanation
Indices: 70437645--70437728 Score: 123
Period size: 29 Copynumber: 2.9 Consensus size: 29
70437635 TGGCTATCTC
* *
70437645 TGTTAAATGGAAGCCTTTATGGTGAACTT
1 TGTTAAATGGAAGCCTTTGTGGTGAAATT
70437674 TGTTAAATGGAAGCCTTTGTGGTGAAATT
1 TGTTAAATGGAAGCCTTTGTGGTGAAATT
* *
70437703 TGTTAAAATGGAAGCTTTTGTAGTGA
1 TGTT-AAATGGAAGCCTTTGTGGTGA
70437729 TCTCTATTAT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 31 0.62
30 19 0.38
ACGTcount: A:0.29, C:0.07, G:0.26, T:0.38
Consensus pattern (29 bp):
TGTTAAATGGAAGCCTTTGTGGTGAAATT
Found at i:70437763 original size:29 final size:29
Alignment explanation
Indices: 70437730--70437827 Score: 169
Period size: 29 Copynumber: 3.4 Consensus size: 29
70437720 TTGTAGTGAT
70437730 CTCTATTATAAGAAAGCCTTTATGGCAAA
1 CTCTATTATAAGAAAGCCTTTATGGCAAA
*
70437759 CTCTATTATAAGAAAGCCTTTATGGCGAA
1 CTCTATTATAAGAAAGCCTTTATGGCAAA
* *
70437788 CTCTATTATAAGAAAGCCTTTGTGGCAAT
1 CTCTATTATAAGAAAGCCTTTATGGCAAA
70437817 CTCTATTATAA
1 CTCTATTATAA
70437828 ATATACCTCT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (29 bp):
CTCTATTATAAGAAAGCCTTTATGGCAAA
Found at i:70442283 original size:5 final size:5
Alignment explanation
Indices: 70442275--70442354 Score: 105
Period size: 5 Copynumber: 16.6 Consensus size: 5
70442265 CTTTTGTTTT
*
70442275 ATATA ATATA ATATA ATATA ATATA ATATA ATAT- A-ATA ATATA ATGTA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
*
70442323 ATATTA ATATA ATA-A A-ATA ATATA TTATA ATA
1 ATA-TA ATATA ATATA ATATA ATATA ATATA ATA
70442355 AAAATCTTAA
Statistics
Matches: 66, Mismatches: 4, Indels: 10
0.82 0.05 0.12
Matches are distributed among these distances:
3 3 0.05
4 6 0.09
5 52 0.79
6 5 0.08
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:70442355 original size:13 final size:13
Alignment explanation
Indices: 70442282--70442346 Score: 80
Period size: 13 Copynumber: 5.0 Consensus size: 13
70442272 TTTATATAAT
70442282 ATAATATAATATAA
1 ATAATATAATAT-A
70442296 TATAATATAATATA
1 -ATAATATAATATA
*
70442310 ATAATATAATGTA
1 ATAATATAATATA
70442323 AT-AT-TAATATA
1 ATAATATAATATA
*
70442334 ATAAAATAATATA
1 ATAATATAATATA
70442347 TTATAATAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
11 8 0.18
12 3 0.07
13 21 0.47
14 1 0.02
15 12 0.27
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (13 bp):
ATAATATAATATA
Found at i:70445786 original size:20 final size:19
Alignment explanation
Indices: 70445757--70445825 Score: 75
Period size: 20 Copynumber: 3.5 Consensus size: 19
70445747 TATTTAAGAT
*
70445757 TTTTTTAATAATTTTCACAA
1 TTTTTGAATAATTTT-ACAA
70445777 TTTTTGAATAAGTTTTACAA
1 TTTTTGAATAA-TTTTACAA
** *
70445797 TTTTTGAATTTTTTTTGCAA
1 TTTTTGAA-TAATTTTACAA
70445817 TTTTTGAAT
1 TTTTTGAAT
70445826 TTTTTGATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
19 1 0.02
20 37 0.86
21 5 0.12
ACGTcount: A:0.29, C:0.06, G:0.07, T:0.58
Consensus pattern (19 bp):
TTTTTGAATAATTTTACAA
Found at i:70445826 original size:20 final size:20
Alignment explanation
Indices: 70445768--70445830 Score: 81
Period size: 20 Copynumber: 3.1 Consensus size: 20
70445758 TTTTTAATAA
* **
70445768 TTTTCACAATTTTTGAATAA
1 TTTTTACAATTTTTGAATTT
*
70445788 GTTTTACAATTTTTGAATTT
1 TTTTTACAATTTTTGAATTT
*
70445808 TTTTTGCAATTTTTGAATTT
1 TTTTTACAATTTTTGAATTT
70445828 TTT
1 TTT
70445831 GATTATTTAT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.25, C:0.06, G:0.08, T:0.60
Consensus pattern (20 bp):
TTTTTACAATTTTTGAATTT
Found at i:70445844 original size:18 final size:18
Alignment explanation
Indices: 70445832--70445879 Score: 57
Period size: 16 Copynumber: 2.8 Consensus size: 18
70445822 GAATTTTTTG
*
70445832 ATTATTTATAATTATATA
1 ATTATTTATAATTTTATA
70445850 ATTATTTAT-ATTTTA-A
1 ATTATTTATAATTTTATA
*
70445866 ATAATTT-TAATTTT
1 ATTATTTATAATTTT
70445880 TAAAAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 1 0.04
16 12 0.44
17 5 0.19
18 9 0.33
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
ATTATTTATAATTTTATA
Found at i:70446024 original size:22 final size:23
Alignment explanation
Indices: 70445999--70446041 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
70445989 TATATATATC
*
70445999 TAATAATTTTT-ATAATTTTTAA
1 TAATAATTTTTAAAAATTTTTAA
70446021 TAATAATTTTTAAAAATTTTT
1 TAATAATTTTTAAAAATTTTT
70446042 GCCTGATGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (23 bp):
TAATAATTTTTAAAAATTTTTAA
Done.