Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 215 of 333
Found at i:70799770 original size:15 final size:15
Alignment explanation
Indices: 70799750--70799779 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
70799740 CCTGTATCTG
70799750 GCCCATTAAGCCCAA
1 GCCCATTAAGCCCAA
*
70799765 GCCCATTAGGCCCAA
1 GCCCATTAAGCCCAA
70799780 ATCACCTGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.40, G:0.17, T:0.13
Consensus pattern (15 bp):
GCCCATTAAGCCCAA
Found at i:70799807 original size:29 final size:29
Alignment explanation
Indices: 70799765--70799836 Score: 99
Period size: 29 Copynumber: 2.5 Consensus size: 29
70799755 TTAAGCCCAA
*
70799765 GCCCATTAGGCCCAAATCACCTGTATATG
1 GCCCATTAGGCCCAAATCACATGTATATG
* *
70799794 GCCCATTAGGCCCAAATCACATTTGTATG
1 GCCCATTAGGCCCAAATCACATGTATATG
* *
70799823 GCCCGTTAAGCCCA
1 GCCCATTAGGCCCA
70799837 GTCATATTCA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (29 bp):
GCCCATTAGGCCCAAATCACATGTATATG
Found at i:70800073 original size:8 final size:8
Alignment explanation
Indices: 70800060--70800110 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
70800050 GTAGCCAAAC
70800060 TTTCGGCT
1 TTTCGGCT
*
70800068 TTTCGGCA
1 TTTCGGCT
**
70800076 TTTCGATT
1 TTTCGGCT
70800084 TTTCGGCAT
1 TTTCGGC-T
*
70800093 TTT-GGCA
1 TTTCGGCT
70800100 TTTCGGCT
1 TTTCGGCT
70800108 TTT
1 TTT
70800111 GCCGATTCAT
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
7 3 0.09
8 26 0.79
9 4 0.12
ACGTcount: A:0.08, C:0.20, G:0.22, T:0.51
Consensus pattern (8 bp):
TTTCGGCT
Found at i:70800110 original size:24 final size:24
Alignment explanation
Indices: 70800060--70800110 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
70800050 GTAGCCAAAC
*
70800060 TTTCGGCTTTTCGGCATTTCGATT
1 TTTCGGCTTTTCGGCATTTCGACT
*
70800084 TTTCGGCATTTT-GGCATTTCGGCT
1 TTTCGGC-TTTTCGGCATTTCGACT
70800108 TTT
1 TTT
70800111 GCCGATTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 20 0.83
25 4 0.17
ACGTcount: A:0.08, C:0.20, G:0.22, T:0.51
Consensus pattern (24 bp):
TTTCGGCTTTTCGGCATTTCGACT
Found at i:70802628 original size:57 final size:56
Alignment explanation
Indices: 70802542--70802672 Score: 163
Period size: 57 Copynumber: 2.3 Consensus size: 56
70802532 AGAAATGGTT
* * *
70802542 AAATGGAGAAATAGGAAACATTTGGAAATGATTAAGGTTTTCTCCAAAATGGAATTGA
1 AAATGGAGAAAT--GAAACATTTGGAAATGAATAAGGTTTTCTCCAAAATGAAAATGA
** *
70802600 AAATGGAGAAATGAAATCATTTGGAAATGAATGTGGTTTTCTCCAAAATGAAAATGG
1 AAATGGAGAAATGAAA-CATTTGGAAATGAATAAGGTTTTCTCCAAAATGAAAATGA
* *
70802657 AAATGAAAAAATGAAA
1 AAATGGAGAAATGAAA
70802673 ATGACCTGAA
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
56 4 0.06
57 48 0.75
58 12 0.19
ACGTcount: A:0.47, C:0.06, G:0.21, T:0.26
Consensus pattern (56 bp):
AAATGGAGAAATGAAACATTTGGAAATGAATAAGGTTTTCTCCAAAATGAAAATGA
Found at i:70806495 original size:31 final size:31
Alignment explanation
Indices: 70806419--70806497 Score: 115
Period size: 31 Copynumber: 2.5 Consensus size: 31
70806409 AGGTTAGATT
**
70806419 TTTTTTCTTCTTCTTTTCATTTTTAGTTATT
1 TTTTTTCTTCTTCTTTTCATTTTTAGTTAGG
70806450 TTTTTTCTTCTTCTTTTCATTTTTAGTTTAGG
1 TTTTTTCTTCTTCTTTTCATTTTTAG-TTAGG
*
70806482 TTTTCTCTT-TTCTTTT
1 TTTTTTCTTCTTCTTTT
70806498 AAGAGTATAT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
31 33 0.75
32 11 0.25
ACGTcount: A:0.08, C:0.14, G:0.05, T:0.73
Consensus pattern (31 bp):
TTTTTTCTTCTTCTTTTCATTTTTAGTTAGG
Found at i:70806495 original size:37 final size:31
Alignment explanation
Indices: 70806416--70806477 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
70806406 TTAAGGTTAG
70806416 ATTTTTTTTCTTCTTCTTTTCATTTTTAGTT
1 ATTTTTTTTCTTCTTCTTTTCATTTTTAGTT
70806447 ATTTTTTTTCTTCTTCTTTTCATTTTTAGTT
1 ATTTTTTTTCTTCTTCTTTTCATTTTTAGTT
70806478 TAGGTTTTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.10, C:0.13, G:0.03, T:0.74
Consensus pattern (31 bp):
ATTTTTTTTCTTCTTCTTTTCATTTTTAGTT
Found at i:70808146 original size:40 final size:40
Alignment explanation
Indices: 70808062--70808286 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
70808052 TTGAATGATG
* * * *
70808062 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
70808102 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70808142 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70808181 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70808221 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
70808262 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70808287 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70808308 original size:119 final size:119
Alignment explanation
Indices: 70808062--70808319 Score: 283
Period size: 119 Copynumber: 2.2 Consensus size: 119
70808052 TTGAATGATG
* *
70808062 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
70808127 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
70808181 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
70808244 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
70808301 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
70808320 TACGTGATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:70816069 original size:40 final size:39
Alignment explanation
Indices: 70815985--70816209 Score: 233
Period size: 40 Copynumber: 5.6 Consensus size: 39
70815975 TTGAATGATG
* * *
70815985 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAT
* *
70816024 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAT
* *
70816065 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAAT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACT-AAT
* *
70816105 T-CGGGTTAAGTTCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAT
*
70816144 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT
* *
70816183 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGT-CCGAAGGCATTTG
70816210 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 17, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
39 35 0.22
40 115 0.72
41 10 0.06
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:70816203 original size:80 final size:79
Alignment explanation
Indices: 70815985--70816209 Score: 276
Period size: 80 Copynumber: 2.8 Consensus size: 79
70815975 TTGAATGATG
* * * * *
70815985 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCGAAGGCATT
*
70816049 TGTGCGAGATACTAAT
64 TGTGCGAGATACTAAA
* * *
70816065 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATTCGGGTTAAGTTCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAG-TCCGAAGGCATT
*
70816128 TGTGCGAGTTACTAAA
64 TGTGCGAGATACTAAA
* *
70816144 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGT-CCGAAGGCATTT
70816209 G
65 G
70816210 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.48
80 62 0.50
81 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:70823048 original size:79 final size:80
Alignment explanation
Indices: 70822899--70823069 Score: 285
Period size: 80 Copynumber: 2.1 Consensus size: 80
70822889 AAGAGGGAGA
70822899 AACAATGCTGGGTTTGTACAGAGAAGCACACAAAGAAGAATGAGAAGCATTCAACCCTGGGCTTT
1 AACAATGCT-GGTTTGTACAGAGAAGCACACAAAGAAGAATGAGAAGCATTCAACCCTGGGCTTT
70822964 ATACAGAG-AAGGAAG
65 ATACAGAGAAAGGAAG
70822979 AACAATGCTGGTTTGTACAGAGAAGCAACACAAAGAAGAATGAGAAGCATTCAACCCT-GGCTTT
1 AACAATGCTGGTTTGTACAGAGAAGC-ACACAAAGAAGAATGAGAAGCATTCAACCCTGGGCTTT
*
70823043 GTACAGAGAAAGGAAG
65 ATACAGAGAAAGGAAG
70823059 AA-ACATGCTGG
1 AACA-ATGCTGG
70823070 GTATCCTTCT
Statistics
Matches: 87, Mismatches: 1, Indels: 6
0.93 0.01 0.06
Matches are distributed among these distances:
79 31 0.36
80 56 0.64
ACGTcount: A:0.40, C:0.16, G:0.26, T:0.18
Consensus pattern (80 bp):
AACAATGCTGGTTTGTACAGAGAAGCACACAAAGAAGAATGAGAAGCATTCAACCCTGGGCTTTA
TACAGAGAAAGGAAG
Found at i:70840406 original size:39 final size:41
Alignment explanation
Indices: 70840306--70840488 Score: 197
Period size: 39 Copynumber: 4.6 Consensus size: 41
70840296 TTGAATGATG
* * * *
70840306 TCCGGGCTAAGT-CCGAAGGC-TTTGTGCTAAATGAC-CATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA
*
70840345 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATT-CTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TTACTAATA
70840385 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
*
70840424 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
70840463 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70840489 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 10, Indels: 19
0.81 0.07 0.12
Matches are distributed among these distances:
38 3 0.02
39 77 0.62
40 34 0.27
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:70840441 original size:79 final size:79
Alignment explanation
Indices: 70840306--70840488 Score: 196
Period size: 79 Copynumber: 2.3 Consensus size: 79
70840296 TTGAATGATG
* *
70840306 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAATGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAATGACCAAATCCGGACTAAGATCCGAAGGCA-TT
70840370 GTGCGAGATT-CTA-A
65 GTGCGAG-TTACTATA
* * * * **
70840384 TTCCGGGCTAAGCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAATGACCAAATCCGGACTAAGAT-CCGAAGGCAT
70840447 TGTGCGAGTTACTATA
64 TGTGCGAGTTACTATA
* *
70840463 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
70840489 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
77 2 0.02
78 22 0.25
79 58 0.65
80 7 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAATGACCAAATCCGGACTAAGATCCGAAGGCATTG
TGCGAGTTACTATA
Found at i:70840519 original size:78 final size:79
Alignment explanation
Indices: 70840357--70840521 Score: 196
Period size: 78 Copynumber: 2.1 Consensus size: 79
70840347 CGGACTAAGA
* **
70840357 TCCGAAGGCATTTGTGCGAGATTCTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGAAGGCATTTGTGCGAGATTCTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTA
*
70840422 AATCCGGGTTAAGT
66 AATCCGGGTTAAAT
* *
70840436 CCCGAAGGCA-TTGTGCGAG-TTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TA
1 TCCGAAGGCATTTGTGCGAGATT-CTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA
*
70840497 GCTATATCC-GGTTAAAT
63 -CTAAATCCGGGTTAAAT
70840514 TCCGAAGG
1 TCCGAAGG
70840522 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
77 4 0.05
78 36 0.49
79 34 0.46
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGAAGGCATTTGTGCGAGATTCTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTA
AATCCGGGTTAAAT
Found at i:70848360 original size:79 final size:81
Alignment explanation
Indices: 70848224--70848408 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
70848214 TTGAATGATG
*
70848224 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAATGACCACATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAATGACCAAATCCGGACTAAGATCCGAAGGCATT
70848288 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * * **
70848303 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAATGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
70848365 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
70848383 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70848409 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAATGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:70848415 original size:40 final size:39
Alignment explanation
Indices: 70848225--70848408 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
70848215 TGAATGATGT
* * * * *
70848225 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAATGACCACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
70848265 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
70848305 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70848343 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
70848384 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
70848409 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70848430 original size:79 final size:79
Alignment explanation
Indices: 70848277--70848441 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
70848267 GGACTAAGAT
* **
70848277 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
70848342 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
70848356 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
70848419 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
70848435 CCGAAGG
1 CCGAAGG
70848442 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:70856676 original size:32 final size:32
Alignment explanation
Indices: 70856640--70856702 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
70856630 TCTATTTTGA
70856640 GAGCTTCGACTCTGTTTCTGAACTAGGACACT
1 GAGCTTCGACTCTGTTTCTGAACTAGGACACT
70856672 GAGCTTCGACTCTGTTTCTGAACTAGGACAC
1 GAGCTTCGACTCTGTTTCTGAACTAGGACAC
70856703 CATCCCCCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.30
Consensus pattern (32 bp):
GAGCTTCGACTCTGTTTCTGAACTAGGACACT
Found at i:70859593 original size:36 final size:36
Alignment explanation
Indices: 70859546--70859618 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
70859536 ATGTTAAATA
70859546 TAAATATGTCAAATATGAGCAACTTTATTCAAAGTT
1 TAAATATGTCAAATATGAGCAACTTTATTCAAAGTT
70859582 TAAATATGTCAAATATGAGCAACTTTATTCAAAGTT
1 TAAATATGTCAAATATGAGCAACTTTATTCAAAGTT
70859618 T
1 T
70859619 TCTATGTATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.37
Consensus pattern (36 bp):
TAAATATGTCAAATATGAGCAACTTTATTCAAAGTT
Found at i:70863214 original size:28 final size:29
Alignment explanation
Indices: 70863182--70863239 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
70863172 TCTTGTAAAT
* *
70863182 AGAAACTA-ATCTCAGTTACTGATTCTTA
1 AGAAACTAGATATCAATTACTGATTCTTA
*
70863210 AGAAATTAGGATATCAATTACTGATTCTTA
1 AGAAACTA-GATATCAATTACTGATTCTTA
70863240 GGGATTAAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 7 0.28
30 18 0.72
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (29 bp):
AGAAACTAGATATCAATTACTGATTCTTA
Found at i:70870187 original size:39 final size:40
Alignment explanation
Indices: 70869983--70870205 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
70869973 TTGAATGCTG
* * * * * *
70869983 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
70870023 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
70870063 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
70870103 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
70870143 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
70870182 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
70870206 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:70870225 original size:79 final size:80
Alignment explanation
Indices: 70870058--70870240 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
70870048 GTGCGAGATA
* * *
70870058 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
70870123 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
70870138 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
70870202 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
70870217 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
70870241 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:70878075 original size:39 final size:40
Alignment explanation
Indices: 70877871--70878093 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
70877861 TTGAATGCTG
* * * * * *
70877871 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
70877911 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
70877951 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
70877991 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
70878031 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
70878070 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
70878094 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:70878113 original size:79 final size:80
Alignment explanation
Indices: 70877946--70878128 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
70877936 GTGCGAGATA
* * *
70877946 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
70878011 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
70878026 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
70878090 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
70878105 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
70878129 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:70882884 original size:36 final size:36
Alignment explanation
Indices: 70882837--70882910 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
70882827 TTCCCATAAA
70882837 GAAAGAATGCAAACCAGTTCAGCAGAAACTTCGAAG
1 GAAAGAATGCAAACCAGTTCAGCAGAAACTTCGAAG
70882873 GAAAGAATGCAAACCAGTTCAGCAGAAACTTCGAAG
1 GAAAGAATGCAAACCAGTTCAGCAGAAACTTCGAAG
70882909 GA
1 GA
70882911 TGAAGCCAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.45, C:0.19, G:0.23, T:0.14
Consensus pattern (36 bp):
GAAAGAATGCAAACCAGTTCAGCAGAAACTTCGAAG
Found at i:70895515 original size:46 final size:45
Alignment explanation
Indices: 70895448--70895663 Score: 175
Period size: 46 Copynumber: 4.6 Consensus size: 45
70895438 TTTGTGAGCT
*
70895448 AGTGTAAGACATGTCTGGGACATGCATCGACCAC-ATTATGATAACC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACGA-GATG-TAACC
* ** * *
70895494 AGTGTAAGACATGTCTGGGACATACATCGGTCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACGAGATGTAA-CC
* * * * * **
70895540 AATGTAAGACATGTCTGCGACATGCACCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACGAGATG-TAACC
* ** * *
70895586 AGTGTAAGACCATGTCTGGGATATGGCATCGA-CTTGAGATATGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACCACGAGATGT-AACC
70895633 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
70895664 GCACCTTACC
Statistics
Matches: 137, Mismatches: 27, Indels: 11
0.78 0.15 0.06
Matches are distributed among these distances:
45 3 0.02
46 76 0.55
47 53 0.39
48 5 0.04
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCACGAGATGTAACC
Found at i:70905277 original size:48 final size:48
Alignment explanation
Indices: 70905206--70905317 Score: 145
Period size: 48 Copynumber: 2.3 Consensus size: 48
70905196 TAATGAGAGT
* * *
70905206 CAGTGTAAGACCATGTCTGGGACATAGCATCGACGTTGATATGAT-AGC
1 CAGTGTAAGACCATATCTGGGACATAGCATCGACATTAATATG-TGAGC
* ** *
70905254 CAGTGTAAGACCATATCTGGGACATGGCATCGGTATTAATATGTGTGC
1 CAGTGTAAGACCATATCTGGGACATAGCATCGACATTAATATGTGAGC
70905302 CAGTGTAAGACCATAT
1 CAGTGTAAGACCATAT
70905318 TTGGAATATG
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
47 1 0.02
48 55 0.98
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (48 bp):
CAGTGTAAGACCATATCTGGGACATAGCATCGACATTAATATGTGAGC
Found at i:70905329 original size:48 final size:49
Alignment explanation
Indices: 70905247--70905379 Score: 144
Period size: 48 Copynumber: 2.7 Consensus size: 49
70905237 GACGTTGATA
* * * * *
70905247 TGATAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGTATTAATATG
1 TGAT-GCCAGTGTAAGACCATATTTGGGATATGGCATCAGCATCAATATG
* * *
70905297 TG-TGCCAGTGTAAGACCATATTTGGAATATGGCGTCAGCCTCAATATG
1 TGATGCCAGTGTAAGACCATATTTGGGATATGGCATCAGCATCAATATG
** *
70905345 TGATTTCA-TGTAAGACCATATTTGGGATATTGCAT
1 TGATGCCAGTGTAAGACCATATTTGGGATATGGCAT
70905380 TGATGTGAGG
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
48 63 0.91
49 4 0.06
50 2 0.03
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.32
Consensus pattern (49 bp):
TGATGCCAGTGTAAGACCATATTTGGGATATGGCATCAGCATCAATATG
Found at i:70914318 original size:13 final size:13
Alignment explanation
Indices: 70914285--70914318 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
70914275 AACAACGCCA
* *
70914285 GACACGGCTGTGT
1 GACACGGTTGTGC
70914298 GACACGGTTGTGC
1 GACACGGTTGTGC
70914311 GACACGGT
1 GACACGGT
70914319 CGTGTGCACT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.18, C:0.24, G:0.38, T:0.21
Consensus pattern (13 bp):
GACACGGTTGTGC
Found at i:70923141 original size:19 final size:19
Alignment explanation
Indices: 70923117--70923153 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
70923107 TAGGGACATG
70923117 GGCATGTCAAGGGCACACT
1 GGCATGTCAAGGGCACACT
70923136 GGCATGTCAAGGGCACAC
1 GGCATGTCAAGGGCACAC
70923154 GGGTGTGTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.27, G:0.32, T:0.14
Consensus pattern (19 bp):
GGCATGTCAAGGGCACACT
Found at i:70926537 original size:27 final size:27
Alignment explanation
Indices: 70926489--70926647 Score: 164
Period size: 27 Copynumber: 5.9 Consensus size: 27
70926479 GCGAGGCTGC
* * *
70926489 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGGCAAAGCCACCAGATA
70926516 CAGATATTGTGGCAAAGCCACCAGA-A
1 CAGATATTGTGGCAAAGCCACCAGATA
* *
70926542 CAGATATATGTGGCAGAGCTACCAGAT-
1 CAGATAT-TGTGGCAAAGCCACCAGATA
* *
70926569 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAAAGCCACCAGATA
*
70926596 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAAAGCCACCAGATA
* *
70926623 CAGATAATTGTGGCATAGGCACCAG
1 CAGAT-ATTGTGGCAAAGCCACCAG
70926648 GGCGCTTCCT
Statistics
Matches: 113, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
26 10 0.09
27 99 0.88
28 4 0.04
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAAAGCCACCAGATA
Found at i:70926583 original size:54 final size:54
Alignment explanation
Indices: 70926507--70926647 Score: 230
Period size: 54 Copynumber: 2.6 Consensus size: 54
70926497 GTGACGAAGT
*
70926507 CACCAGATACAGAT-ATTGTGGCAAAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* *
70926561 TACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
70926615 CACCAGATCAGATAATTGTGGCATAGGCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
70926648 GGCGCTTCCT
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 5 0.06
54 75 0.94
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:70926780 original size:26 final size:27
Alignment explanation
Indices: 70926751--70926826 Score: 91
Period size: 26 Copynumber: 2.8 Consensus size: 27
70926741 CAAAATTAAC
* *
70926751 CCTAGGGGTATAATGGTAATTTTGC-A
1 CCTAGGGGTATAATAGTAATTTTCCAA
*
70926777 CCTAGGGGTATAACAGTAATTTTCCATA
1 CCTAGGGGTATAATAGTAATTTTCCA-A
* *
70926805 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATAATAGTAATTT
70926827 AGCTACTTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 22 0.52
28 20 0.48
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (27 bp):
CCTAGGGGTATAATAGTAATTTTCCAA
Found at i:70928305 original size:26 final size:26
Alignment explanation
Indices: 70928269--70928376 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
70928259 TGAAATGCCA
*
70928269 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
70928295 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
70928321 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
70928347 ATCATGGAACATTCACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
70928373 ATCA
1 ATCA
70928377 CTTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:70934541 original size:3 final size:3
Alignment explanation
Indices: 70934533--70934582 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
70934523 TTGAACGTCC
70934533 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
70934581 AT
1 AT
70934583 AAATAAAATA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:70942563 original size:19 final size:20
Alignment explanation
Indices: 70942526--70942564 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
70942516 GAATTTAAAT
70942526 GGGAAAATATATTCTGAAAA
1 GGGAAAATATATTCTGAAAA
* *
70942546 GGGAAATTATCTTC-GAAAA
1 GGGAAAATATATTCTGAAAA
70942565 ATAATACATC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.46, C:0.08, G:0.21, T:0.26
Consensus pattern (20 bp):
GGGAAAATATATTCTGAAAA
Found at i:70943967 original size:24 final size:25
Alignment explanation
Indices: 70943920--70943980 Score: 88
Period size: 24 Copynumber: 2.5 Consensus size: 25
70943910 CTTGCTTAAA
*
70943920 CTTCCCGATATATGGCTATCTGGAG
1 CTTCCCGTTATATGGCTATCTGGAG
* *
70943945 CTTCCCGTTA-ATGGCTCTTTGGAG
1 CTTCCCGTTATATGGCTATCTGGAG
70943969 CTTCCCGTTATA
1 CTTCCCGTTATA
70943981 CAGCCTGGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
24 22 0.69
25 10 0.31
ACGTcount: A:0.16, C:0.26, G:0.21, T:0.36
Consensus pattern (25 bp):
CTTCCCGTTATATGGCTATCTGGAG
Found at i:70943999 original size:74 final size:74
Alignment explanation
Indices: 70943868--70944010 Score: 173
Period size: 74 Copynumber: 1.9 Consensus size: 74
70943858 GGCTCTTCGT
* * * *
70943868 GAGCTTCCTGATTAAAGGCTCTTTGTGAGCTTCCCGATATAACTTGCTTAAACTTCCCGATATAT
1 GAGCTTCCCGATTAAAGGCTCTTTGTGAGCTTCCCGATATAACCTGCATAAACTTCCCGATACAT
70943933 GGCTATCTG
66 GGCTATCTG
* * * * *
70943942 GAGCTTCCCG-TTAATGGCTCTTTG-GAGCTTCCCGTTATACAGCCTGGATAAGCTTCCCGTTAC
1 GAGCTTCCCGATTAAAGGCTCTTTGTGAGCTTCCCGATATA-A-CCTGCATAAACTTCCCGATAC
70944005 ATGGCT
64 ATGGCT
70944011 CCCATGAGCT
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
72 14 0.24
73 14 0.24
74 30 0.52
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (74 bp):
GAGCTTCCCGATTAAAGGCTCTTTGTGAGCTTCCCGATATAACCTGCATAAACTTCCCGATACAT
GGCTATCTG
Found at i:70947940 original size:24 final size:24
Alignment explanation
Indices: 70947885--70947941 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
70947875 TTAGATCGTA
*
70947885 TTTAGATAGATATGTGGTGATATTT
1 TTTAGAT-GATATCTGGTGATATTT
*
70947910 ATT-GATGATATTCTGGT-ATATTT
1 TTTAGATGATA-TCTGGTGATATTT
70947933 TTTAGATGA
1 TTTAGATGA
70947942 AACCTAGCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
23 12 0.44
24 13 0.48
25 2 0.07
ACGTcount: A:0.28, C:0.02, G:0.21, T:0.49
Consensus pattern (24 bp):
TTTAGATGATATCTGGTGATATTT
Found at i:70949511 original size:9 final size:9
Alignment explanation
Indices: 70949493--70949528 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
70949483 TTCTGGTTAG
*
70949493 TGTTTAAAT
1 TGTTTTAAT
70949502 TGTTTTAAT
1 TGTTTTAAT
*
70949511 TTTTTTAAT
1 TGTTTTAAT
70949520 TGTTTTAAT
1 TGTTTTAAT
70949529 GGTGGGTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.08, T:0.67
Consensus pattern (9 bp):
TGTTTTAAT
Found at i:70950660 original size:29 final size:31
Alignment explanation
Indices: 70950627--70950696 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 31
70950617 TAAATTTAAT
*
70950627 ATTCATGTATCAAA-T-CATA-TAAAGTCAAA
1 ATTCATGTATCAAATTGAATACTAAA-TCAAA
* *
70950656 ATTCATATATCAAATTGAATACTAAATCATA
1 ATTCATGTATCAAATTGAATACTAAATCAAA
70950687 ATTCATGTAT
1 ATTCATGTAT
70950697 AACTCTTAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
29 13 0.38
30 1 0.03
31 16 0.47
32 4 0.12
ACGTcount: A:0.46, C:0.13, G:0.06, T:0.36
Consensus pattern (31 bp):
ATTCATGTATCAAATTGAATACTAAATCAAA
Found at i:70957674 original size:18 final size:18
Alignment explanation
Indices: 70957653--70957719 Score: 54
Period size: 20 Copynumber: 3.8 Consensus size: 18
70957643 TATTGATGAA
70957653 TATTTTATATTTAAAATT
1 TATTTTATATTTAAAATT
70957671 TA-TTTA-ATTT--AATT
1 TATTTTATATTTAAAATT
**
70957685 T-TTTTATATTTATAAAAA
1 TATTTTATATTTA-AAATT
70957703 TATTTTTATATATTAAA
1 TA-TTTTATAT-TTAAA
70957720 TGCTTTTTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 14
0.71 0.04 0.25
Matches are distributed among these distances:
14 9 0.23
15 4 0.10
16 4 0.10
17 4 0.10
18 5 0.13
20 10 0.26
21 3 0.08
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TATTTTATATTTAAAATT
Found at i:70960933 original size:16 final size:17
Alignment explanation
Indices: 70960903--70960935 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
70960893 GTGGTTTCTG
*
70960903 ATATGATACATACATAT
1 ATATGATACACACATAT
70960920 ATAT-ATACACACATAT
1 ATATGATACACACATAT
70960936 GCACATTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.48, C:0.15, G:0.03, T:0.33
Consensus pattern (17 bp):
ATATGATACACACATAT
Found at i:70962113 original size:30 final size:30
Alignment explanation
Indices: 70962077--70962136 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
70962067 CGCACAAATT
* *
70962077 ATTATCTTCATCAGTTGTATATATTAATAA
1 ATTATCTCCATAAGTTGTATATATTAATAA
70962107 ATTATCTCCATAAGTTGTATATATTAATAA
1 ATTATCTCCATAAGTTGTATATATTAATAA
70962137 TGTTGTTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (30 bp):
ATTATCTCCATAAGTTGTATATATTAATAA
Found at i:70963353 original size:49 final size:49
Alignment explanation
Indices: 70963298--70963397 Score: 182
Period size: 49 Copynumber: 2.0 Consensus size: 49
70963288 ATGTGTATTT
*
70963298 ATAATTTTTAGTACATTAATAAATGTTATATATAAGTAAATATATCTCA
1 ATAATTTTTAGTACATTAATAAATGTTATATACAAGTAAATATATCTCA
*
70963347 ATAATTTTTAGTATATTAATAAATGTTATATACAAGTAAATATATCTCA
1 ATAATTTTTAGTACATTAATAAATGTTATATACAAGTAAATATATCTCA
70963396 AT
1 AT
70963398 TATAATATAA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.43
Consensus pattern (49 bp):
ATAATTTTTAGTACATTAATAAATGTTATATACAAGTAAATATATCTCA
Found at i:70963575 original size:29 final size:29
Alignment explanation
Indices: 70963505--70963577 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
70963495 GTACTTTCAT
70963505 AAAATGTCTAATGTGGTAACTATACTTTG
1 AAAATGTCTAATGTGGTAACTATACTTTG
* *
70963534 AAAATATCCAATGTGGT-ACTTATACTTTG
1 AAAATGTCTAATGTGGTAAC-TATACTTTG
*
70963563 AAAATGTTTAATGTG
1 AAAATGTCTAATGTG
70963578 ATAGTTGAAC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
28 2 0.05
29 36 0.95
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.38
Consensus pattern (29 bp):
AAAATGTCTAATGTGGTAACTATACTTTG
Found at i:70964613 original size:32 final size:32
Alignment explanation
Indices: 70964577--70964638 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
70964567 CATGTTTTTT
70964577 ATGTATGAGGTTCATTTCTGATGTCAAATTTG
1 ATGTATGAGGTTCATTTCTGATGTCAAATTTG
70964609 ATGTATGAGGTTCATTTCTGATGTCAAATT
1 ATGTATGAGGTTCATTTCTGATGTCAAATT
70964639 GGTGACAGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.26, C:0.10, G:0.21, T:0.44
Consensus pattern (32 bp):
ATGTATGAGGTTCATTTCTGATGTCAAATTTG
Found at i:70969575 original size:78 final size:78
Alignment explanation
Indices: 70969446--70969603 Score: 282
Period size: 78 Copynumber: 2.0 Consensus size: 78
70969436 TCTTTTAGCT
70969446 CCGAAGAGTCAGTAAATATTTTTCGAAGTGTCACTTCATAGAGCTTTTATACTGTTTACATGATG
1 CCGAAGAGTCAGTAAATATTTTTCGAAGTGTCACTTCATAGAGCTTTTATACTGTTTACATGATG
70969511 TCACT-CGTAAGAG
66 TCACTCCG-AAGAG
* *
70969524 CCGAAGAGTCAGTAAATATTTTTCGAGGTGTCACTTCATAGAGCTTTTATACTGTTTACATGGTG
1 CCGAAGAGTCAGTAAATATTTTTCGAAGTGTCACTTCATAGAGCTTTTATACTGTTTACATGATG
70969589 TCACTCCGAAGAG
66 TCACTCCGAAGAG
70969602 CC
1 CC
70969604 TATAGATCAT
Statistics
Matches: 77, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
78 75 0.97
79 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (78 bp):
CCGAAGAGTCAGTAAATATTTTTCGAAGTGTCACTTCATAGAGCTTTTATACTGTTTACATGATG
TCACTCCGAAGAG
Found at i:70979875 original size:50 final size:50
Alignment explanation
Indices: 70979800--70979902 Score: 188
Period size: 50 Copynumber: 2.1 Consensus size: 50
70979790 CCCTGGTCAC
70979800 TAGAACTAAAAGTCCAACACTCTACCAATAGGCAGCATGACCATTTACCT
1 TAGAACTAAAAGTCCAACACTCTACCAATAGGCAGCATGACCATTTACCT
* *
70979850 TAGAACTAAAAGTCCAACACTCTACCAATAGGCAGCATGACTATTTGCCT
1 TAGAACTAAAAGTCCAACACTCTACCAATAGGCAGCATGACCATTTACCT
70979900 TAG
1 TAG
70979903 GAGGAGATTT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.23
Consensus pattern (50 bp):
TAGAACTAAAAGTCCAACACTCTACCAATAGGCAGCATGACCATTTACCT
Found at i:70980570 original size:19 final size:18
Alignment explanation
Indices: 70980546--70980589 Score: 70
Period size: 19 Copynumber: 2.4 Consensus size: 18
70980536 AATATGAATA
*
70980546 AAATTTATCTTCCTAAAT
1 AAATTTATCTACCTAAAT
70980564 AAGATTTATCTACCTAAAT
1 AA-ATTTATCTACCTAAAT
70980583 AAATTTA
1 AAATTTA
70980590 AAATATATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.43, C:0.14, G:0.02, T:0.41
Consensus pattern (18 bp):
AAATTTATCTACCTAAAT
Found at i:70981374 original size:125 final size:125
Alignment explanation
Indices: 70981152--70981402 Score: 484
Period size: 125 Copynumber: 2.0 Consensus size: 125
70981142 TATCTTAGAA
70981152 TTCGAAACACTGCTTCTTCATATTCCTCCATTGGAGAGTGCATAAATTGACTCACTAAGCTCACT
1 TTCGAAACACTGCTTCTTCATATTCCTCCATTGGAGAGTGCATAAATTGACTCACTAAGCTCACT
70981217 GCAAAAGCTATGTCTGGCATTGTATGTGATAAGTAAATTAACTTACCAACTAATCTTTGG
66 GCAAAAGCTATGTCTGGCATTGTATGTGATAAGTAAATTAACTTACCAACTAATCTTTGG
*
70981277 TTCGAAACACTGCTTCTTCATATTCCTCCATTGGAGAGTGCATAAATTGACTCACTAAGCTCATT
1 TTCGAAACACTGCTTCTTCATATTCCTCCATTGGAGAGTGCATAAATTGACTCACTAAGCTCACT
*
70981342 GCAAAAGCTATGTCTGGCATTGTATGTGATAAGTAAATTAACTTACTAACTAATCTTTGG
66 GCAAAAGCTATGTCTGGCATTGTATGTGATAAGTAAATTAACTTACCAACTAATCTTTGG
70981402 T
1 T
70981403 ACTGCCCTTT
Statistics
Matches: 124, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
125 124 1.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (125 bp):
TTCGAAACACTGCTTCTTCATATTCCTCCATTGGAGAGTGCATAAATTGACTCACTAAGCTCACT
GCAAAAGCTATGTCTGGCATTGTATGTGATAAGTAAATTAACTTACCAACTAATCTTTGG
Found at i:70983627 original size:33 final size:33
Alignment explanation
Indices: 70983590--70983712 Score: 228
Period size: 33 Copynumber: 3.7 Consensus size: 33
70983580 TCTGTTTCAA
70983590 GTTGCTGGACAGGAGCTGGAATGTGAGTGTTTG
1 GTTGCTGGACAGGAGCTGGAATGTGAGTGTTTG
*
70983623 GTTGCTGGACGGGAGCTGGAATGTGAGTGTTTG
1 GTTGCTGGACAGGAGCTGGAATGTGAGTGTTTG
70983656 GTTGCTGGACAGGAGCTGGAATGTGAGTGTTTG
1 GTTGCTGGACAGGAGCTGGAATGTGAGTGTTTG
*
70983689 GTTGCTGGACAGTAGCTGGAATGT
1 GTTGCTGGACAGGAGCTGGAATGT
70983713 CAAGAAGAAA
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 87 1.00
ACGTcount: A:0.18, C:0.10, G:0.42, T:0.30
Consensus pattern (33 bp):
GTTGCTGGACAGGAGCTGGAATGTGAGTGTTTG
Found at i:70986985 original size:33 final size:33
Alignment explanation
Indices: 70986943--70987009 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
70986933 CATAGCCAAC
*
70986943 AAAGACACATTTTGTTGCTCTAGGATCTAGTTT
1 AAAGACACATTTTATTGCTCTAGGATCTAGTTT
70986976 AAAGACACATTTTATTGCTCTAGGATCTAGTTT
1 AAAGACACATTTTATTGCTCTAGGATCTAGTTT
70987009 A
1 A
70987010 CCTTGGATGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.39
Consensus pattern (33 bp):
AAAGACACATTTTATTGCTCTAGGATCTAGTTT
Found at i:70988754 original size:42 final size:42
Alignment explanation
Indices: 70988695--70988778 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
70988685 AATCCTAAAT
70988695 GGGAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAA
1 GGGAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAA
* *
70988737 GGGAAAATAGTTCCCTTATTCTAATAAACTATTAAAAGATAA
1 GGGAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAA
70988779 AATAAAAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.45, C:0.14, G:0.11, T:0.30
Consensus pattern (42 bp):
GGGAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAA
Found at i:70988842 original size:19 final size:19
Alignment explanation
Indices: 70988806--70988850 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
70988796 AATATGAATA
*
70988806 AAATTTATCTTTCCTAAAT
1 AAATTTATCTTACCTAAAT
70988825 AAGATTTATC-TACCTAAAT
1 AA-ATTTATCTTACCTAAAT
70988844 AAATTTA
1 AAATTTA
70988851 AAATATATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 5 0.21
19 12 0.50
20 7 0.29
ACGTcount: A:0.42, C:0.13, G:0.02, T:0.42
Consensus pattern (19 bp):
AAATTTATCTTACCTAAAT
Found at i:70991923 original size:2 final size:2
Alignment explanation
Indices: 70991918--70991942 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
70991908 TTTTTTTTTT
70991918 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
70991943 TGGGGGGGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:70992945 original size:13 final size:13
Alignment explanation
Indices: 70992927--70992964 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
70992917 AAGCACAGCA
70992927 AATCTGTTGATGC
1 AATCTGTTGATGC
*
70992940 AATCTGTAGATG-
1 AATCTGTTGATGC
*
70992952 AAGCTGTTGATGC
1 AATCTGTTGATGC
70992965 GGCATCTCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.34
Consensus pattern (13 bp):
AATCTGTTGATGC
Found at i:71005645 original size:40 final size:40
Alignment explanation
Indices: 71005567--71005747 Score: 249
Period size: 40 Copynumber: 4.5 Consensus size: 40
71005557 TCCCAAGTAT
* *
71005567 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
71005606 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
**
71005646 CTTCGGGACTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
71005686 CTTCGGGACTTAGCCTGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
71005726 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
71005748 CATCCGAATA
Statistics
Matches: 128, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 11 0.09
40 116 0.91
41 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:71012679 original size:17 final size:18
Alignment explanation
Indices: 71012657--71012691 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
71012647 CATGACAGCC
*
71012657 CATATTTT-CCATTTATT
1 CATATTTTACCATATATT
71012674 CATATTTTACCATATATT
1 CATATTTTACCATATATT
71012692 TTACAACCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54
Consensus pattern (18 bp):
CATATTTTACCATATATT
Found at i:71013823 original size:27 final size:23
Alignment explanation
Indices: 71013762--71013807 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
71013752 TTATGGTAGT
71013762 AAGAGAAATTCAGCTAGCATGGG
1 AAGAGAAATTCAGCTAGCATGGG
71013785 AAGAGAAATTCAGCTAGCATGGG
1 AAGAGAAATTCAGCTAGCATGGG
71013808 TAGGGACTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.30, T:0.17
Consensus pattern (23 bp):
AAGAGAAATTCAGCTAGCATGGG
Found at i:71016649 original size:40 final size:40
Alignment explanation
Indices: 71016605--71016728 Score: 107
Period size: 40 Copynumber: 3.2 Consensus size: 40
71016595 TGACTAGTGC
71016605 TGGGCACATCATTATCTTCGTTAGTTTATCCAACTAGCAT
1 TGGGCACATCATTATCTTCGTTAGTTTATCCAACTAGCAT
* * * * *
71016645 TGGGCACA--A--ATCTTTGTCAATTTA-CCTTACTAGTAT
1 TGGGCACATCATTATCTTCGTTAGTTTATCC-AACTAGCAT
* ** *
71016681 TGGGCATATCATTATCTTCGTT-GATTTATCTGACTAGCGT
1 TGGGCACATCATTATCTTCGTTAG-TTTATCCAACTAGCAT
71016721 TGGGCACA
1 TGGGCACA
71016729 AATCTTCGTC
Statistics
Matches: 63, Mismatches: 14, Indels: 14
0.69 0.15 0.15
Matches are distributed among these distances:
35 2 0.03
36 26 0.41
38 2 0.03
40 32 0.51
41 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (40 bp):
TGGGCACATCATTATCTTCGTTAGTTTATCCAACTAGCAT
Found at i:71016750 original size:36 final size:36
Alignment explanation
Indices: 71016618--71016753 Score: 112
Period size: 36 Copynumber: 3.7 Consensus size: 36
71016608 GCACATCATT
* **
71016618 ATCTTCGTTAGTTTATCCAACTAGCATTGGGCACAA
1 ATCTTCGTCAGTTTATCTGACTAGCATTGGGCACAA
* * * * * *
71016654 ATCTTTGTCAATTTACCTTACTAGTATTGGGCATATCATT
1 ATCTTCGTCAGTTTATCTGACTAGCATTGGGC--A-CA-A
* *
71016694 ATCTTCGT-TGATTTATCTGACTAGCGTTGGGCACAA
1 ATCTTCGTCAG-TTTATCTGACTAGCATTGGGCACAA
*
71016730 ATCTTCGTCAGTTTAACTGACTAG
1 ATCTTCGTCAGTTTATCTGACTAG
71016754 AGCTGGGCAC
Statistics
Matches: 76, Mismatches: 18, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
36 45 0.59
37 3 0.04
38 2 0.03
39 2 0.03
40 24 0.32
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (36 bp):
ATCTTCGTCAGTTTATCTGACTAGCATTGGGCACAA
Found at i:71016850 original size:149 final size:151
Alignment explanation
Indices: 71016673--71016954 Score: 381
Period size: 149 Copynumber: 1.9 Consensus size: 151
71016663 AATTTACCTT
* * * *
71016673 ACTAGTATTGGGCATATCATTATCTTCGT-TGATTTATCTGACTAGCGTTGGGCACAAATCTTCG
1 ACTAGTATTGGGCACATCATTATATTCGTCGGA-TTATCTGACTAGCGCTGGGCACAAATCTTCG
* * ** *
71016737 TCAGTTTAACTGACTAGAGCTGGGCACATTAT-TATATCCGTCA-TATCCGACTAGCGCTGGGTG
65 TCAGTTTAACTAACTAGAGCTAGGCACAACATCTATATCCGTCATTATCCGACTAGCGCTGGGCG
71016800 CAAATCTTCACCGGTTTATCTG
130 CAAATCTTCACCGGTTTATCTG
* * *
71016822 ACTAGTGTTGGGCACATCATTTTATTCGTCGGATTATCTGACTAGCGCTGGGCCCAAATCTTCGT
1 ACTAGTATTGGGCACATCATTATATTCGTCGGATTATCTGACTAGCGCTGGGCACAAATCTTCGT
* * * **
71016887 TAGTTTAACTAACTAGTGCTAGGCACAACCTCTATATTTGTCATTATCCGACTAGCGCTGGGCGC
66 CAGTTTAACTAACTAGAGCTAGGCACAACATCTATATCCGTCATTATCCGACTAGCGCTGGGCGC
71016952 AAA
131 AAA
71016955 ACTTATTTAT
Statistics
Matches: 113, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
149 79 0.70
150 11 0.10
151 23 0.20
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (151 bp):
ACTAGTATTGGGCACATCATTATATTCGTCGGATTATCTGACTAGCGCTGGGCACAAATCTTCGT
CAGTTTAACTAACTAGAGCTAGGCACAACATCTATATCCGTCATTATCCGACTAGCGCTGGGCGC
AAATCTTCACCGGTTTATCTG
Found at i:71016904 original size:76 final size:75
Alignment explanation
Indices: 71016574--71016954 Score: 336
Period size: 76 Copynumber: 5.1 Consensus size: 75
71016564 TTCTTGGTGA
* * ** * * * *
71016574 ACAAATCTTCATCAATTTATGTGACTAGTGCTGGGCACATCATTATCTTCGTTAGTTTATCCAAC
1 ACAAATCTTCGTCAGTTTAACTGACTAGTGCTGGGCACATCATTATATTCG-TCGATTATCCGAC
**
71016639 TAGCATTGGGC
65 TAGCGCTGGGC
* * * * ** * * * *
71016650 ACAAATCTTTGTCAATTTACCTTACTAGTATTGGGCATATCATTATCTTCGTTGATTTATCTGAC
1 ACAAATCTTCGTCAGTTTAACTGACTAGTGCTGGGCACATCATTATATTCGTCGA-TTATCCGAC
*
71016715 TAGCGTTGGGC
65 TAGCGCTGGGC
* * *
71016726 ACAAATCTTCGTCAGTTTAACTGACTAGAGCTGGGCACATTATTATATCCGTC-A-TATCCGACT
1 ACAAATCTTCGTCAGTTTAACTGACTAGTGCTGGGCACATCATTATATTCGTCGATTATCCGACT
*
71016789 AGCGCTGGGT
66 AGCGCTGGGC
* ** * * * * *
71016799 GCAAATCTTCACCGGTTTATCTGACTAGTGTTGGGCACATCATTTTATTCGTCGGATTATCTGAC
1 ACAAATCTTCGTCAGTTTAACTGACTAGTGCTGGGCACATCATTATATTCGTC-GATTATCCGAC
71016864 TAGCGCTGGGC
65 TAGCGCTGGGC
* * * * * * *
71016875 CCAAATCTTCGTTAGTTTAACTAACTAGTGCTAGGCACAACCTCTATATTTGTC-ATTATCCGAC
1 ACAAATCTTCGTCAGTTTAACTGACTAGTGCTGGGCACATCAT-TATATTCGTCGATTATCCGAC
71016939 TAGCGCTGGGC
65 TAGCGCTGGGC
*
71016950 GCAAA
1 ACAAA
71016955 ACTTATTTAT
Statistics
Matches: 245, Mismatches: 55, Indels: 11
0.79 0.18 0.04
Matches are distributed among these distances:
73 59 0.24
75 28 0.11
76 150 0.61
77 8 0.03
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (75 bp):
ACAAATCTTCGTCAGTTTAACTGACTAGTGCTGGGCACATCATTATATTCGTCGATTATCCGACT
AGCGCTGGGC
Found at i:71021140 original size:17 final size:17
Alignment explanation
Indices: 71021115--71021147 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
71021105 ATATTTTTAT
71021115 TTAAATATAATTATTAA
1 TTAAATATAATTATTAA
*
71021132 TTAATTATAATTATTA
1 TTAAATATAATTATTA
71021148 TAAATAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TTAAATATAATTATTAA
Found at i:71021161 original size:20 final size:20
Alignment explanation
Indices: 71021124--71021166 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
71021114 TTTAAATATA
* * * *
71021124 ATTATTAATTAATTATAATT
1 ATTATAAATAAATAATAACT
71021144 ATTATAAATAAATAATAACT
1 ATTATAAATAAATAATAACT
71021164 ATT
1 ATT
71021167 GGAATTAGAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
ATTATAAATAAATAATAACT
Found at i:71021250 original size:10 final size:10
Alignment explanation
Indices: 71021232--71021269 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
71021222 AGAGTTTTAG
71021232 TATTTAATTA
1 TATTTAATTA
*
71021242 TAATTAATTA
1 TATTTAATTA
71021252 TTATTTAATTA
1 -TATTTAATTA
71021263 TATTTAA
1 TATTTAA
71021270 ATAAAGTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
TATTTAATTA
Found at i:71021459 original size:7 final size:8
Alignment explanation
Indices: 71021436--71021460 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
71021426 TATAATGAAG
71021436 TTAATTTT
1 TTAATTTT
71021444 TTAATTTT
1 TTAATTTT
71021452 TTAATTTT
1 TTAATTTT
71021460 T
1 T
71021461 CCAAAGATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TTAATTTT
Found at i:71025589 original size:12 final size:12
Alignment explanation
Indices: 71025572--71025611 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
71025562 AAATATAAAA
*
71025572 GTCGTGGCCGTG
1 GTCGTGGACGTG
71025584 GTCGTGGACGTG
1 GTCGTGGACGTG
* *
71025596 GTAGGGGACGTG
1 GTCGTGGACGTG
71025608 GTCG
1 GTCG
71025612 AGGATGTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.07, C:0.17, G:0.53, T:0.23
Consensus pattern (12 bp):
GTCGTGGACGTG
Found at i:71032182 original size:13 final size:14
Alignment explanation
Indices: 71032156--71032185 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
71032146 CTGAAAAATG
71032156 TATTAGAAAATATT
1 TATTAGAAAATATT
71032170 TATTA-AAAATATT
1 TATTAGAAAATATT
71032183 TAT
1 TAT
71032186 GAAGTTAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (14 bp):
TATTAGAAAATATT
Found at i:71033454 original size:51 final size:51
Alignment explanation
Indices: 71033378--71033488 Score: 143
Period size: 51 Copynumber: 2.2 Consensus size: 51
71033368 AGAACTAAGT
* * * *
71033378 TATCCGGATGAAATATGAAGCTCTTGTTGAA-ACTAGAGCAATAAAGTAATA
1 TATCCGGATGAAATATAAAGCTCTTGATGAAGAC-AGAACAACAAAGTAATA
* *
71033429 TATCCGGATGAAATATAAAGTTCTTGATGAAGGCAGAACAACAAAGTAATA
1 TATCCGGATGAAATATAAAGCTCTTGATGAAGACAGAACAACAAAGTAATA
*
71033480 TTTCCGGAT
1 TATCCGGAT
71033489 AAAGTATGAA
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
51 51 0.98
52 1 0.02
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.27
Consensus pattern (51 bp):
TATCCGGATGAAATATAAAGCTCTTGATGAAGACAGAACAACAAAGTAATA
Found at i:71033838 original size:15 final size:15
Alignment explanation
Indices: 71033816--71033862 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
71033806 ATCAAATTTT
71033816 TATTGATTGAAATCA
1 TATTGATTGAAATCA
* * *
71033831 TTTTGATTGAATTTA
1 TATTGATTGAAATCA
71033846 TATTGATTGAAAT-A
1 TATTGATTGAAATCA
71033860 TAT
1 TAT
71033863 ATATATATGA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 4 0.15
15 23 0.85
ACGTcount: A:0.36, C:0.02, G:0.13, T:0.49
Consensus pattern (15 bp):
TATTGATTGAAATCA
Found at i:71044343 original size:22 final size:22
Alignment explanation
Indices: 71044316--71044392 Score: 61
Period size: 22 Copynumber: 3.4 Consensus size: 22
71044306 CATGCACATG
71044316 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
71044338 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
71044361 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
71044385 TGTGATAA
1 TGTGATAA
71044393 ACGTGGAAGT
Statistics
Matches: 42, Mismatches: 4, Indels: 18
0.66 0.06 0.28
Matches are distributed among these distances:
22 17 0.40
23 8 0.19
24 8 0.19
25 9 0.21
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:71044345 original size:47 final size:47
Alignment explanation
Indices: 71044294--71044814 Score: 744
Period size: 47 Copynumber: 11.1 Consensus size: 47
71044284 GATTTTATGA
*
71044294 GATGAATGTGAACATGCACATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
71044341 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* * * * * * *
71044388 GATAAACGTGGAA-GTGTATATATGTGGTAAGGCCGAATGGCCAAATTT
1 GATGAATGT-GAACATGCATATGTGTGATAAGGCCGAATGGCC-AATGT
71044436 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* * * * *
71044483 GATAAACGTGGAA-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGT-GAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
71044530 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* * * * *
71044577 GATAAACGTGGAA-GTGTATATCTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGT-GAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
71044624 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* * * * *
71044671 GATAAACGTGGAA-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGT-GAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
71044718 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
**
71044765 GATGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
71044812 GAT
1 GAT
71044815 AAACGTGGAA
Statistics
Matches: 418, Mismatches: 47, Indels: 18
0.87 0.10 0.04
Matches are distributed among these distances:
46 9 0.02
47 361 0.86
48 48 0.11
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
Found at i:71044662 original size:141 final size:141
Alignment explanation
Indices: 71044294--71044860 Score: 854
Period size: 141 Copynumber: 4.0 Consensus size: 141
71044284 GATTTTATGA
*
71044294 GATGAATGTGAACATGCACATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
*
71044359 TATGTGTGATAAGGCCGAATGGCCAATGTGATAAACGTGGAAGTGTATATATGTGGTAAGGCCGA
66 TATGTGTGATAAGGCCGAATGGCCAATGTGATAAACGTGGAAGTGTATATATGTGATAAGGCCGA
*
71044424 ATGGCCAAATTT
131 ATGGCC-AATGT
* * * *
71044436 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATAAACGTGGAA-GTGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATGC
* * * * * *
71044500 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATGCATATGTGTGATAAGGCC
65 ATATGTGTGATAAGGCCGAATGGCCAATGTGATAAACGTGGAA-GTGTATATATGTGATAAGGCC
71044564 GAATGGCCAATGT
129 GAATGGCCAATGT
* * * * *
71044577 GATAAACGTGGAA-GTGTATATCTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 GATGAATGT-GAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
71044641 ATATGTGTGATAAGGCCGAATGGCCAATGTGATAAACGTGGAAGTGTATATATGTGATAAGGCCG
65 ATATGTGTGATAAGGCCGAATGGCCAATGTGATAAACGTGGAAGTGTATATATGTGATAAGGCCG
71044706 AATGGCCAATGT
130 AATGGCCAATGT
71044718 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
** **
71044783 TATGTGTGATAAGGTAGAATGGCCAATGTGATAAACGTGGAAGTGTATATATGTGGCGAA-GCCG
66 TATGTGTGATAAGGCCGAATGGCCAATGTGATAAACGTGGAAGTGTATATATGT-GATAAGGCCG
*
71044847 AATGGCTAATGT
130 AATGGCCAATGT
71044859 GA
1 GA
71044861 GATATGTATG
Statistics
Matches: 380, Mismatches: 38, Indels: 15
0.88 0.09 0.03
Matches are distributed among these distances:
140 6 0.02
141 246 0.65
142 125 0.33
143 3 0.01
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.26
Consensus pattern (141 bp):
GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
TATGTGTGATAAGGCCGAATGGCCAATGTGATAAACGTGGAAGTGTATATATGTGATAAGGCCGA
ATGGCCAATGT
Found at i:71044788 original size:23 final size:23
Alignment explanation
Indices: 71044714--71044788 Score: 59
Period size: 23 Copynumber: 3.2 Consensus size: 23
71044704 CGAATGGCCA
71044714 ATGTGATGAATGTGAACATGCAT
1 ATGTGATGAATGTGAACATGCAT
* *
71044737 ATGTG-TGATAAG-G-CCGAATGGCCA-
1 ATGTGATGA-ATGTGAAC--AT-G-CAT
71044761 ATGTGATGAATGTGAACATGCAT
1 ATGTGATGAATGTGAACATGCAT
71044784 ATGTG
1 ATGTG
71044789 TGATAAGGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 18
0.64 0.07 0.30
Matches are distributed among these distances:
21 1 0.03
22 6 0.15
23 15 0.38
24 10 0.26
25 6 0.15
26 1 0.03
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCAT
Found at i:71044860 original size:94 final size:94
Alignment explanation
Indices: 71044316--71044814 Score: 883
Period size: 94 Copynumber: 5.3 Consensus size: 94
71044306 CATGCACATG
71044316 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGG
71044381 CCAATGTGATAAACGTGGAAGTGTATATA
66 CCAATGTGATAAACGTGGAAGTGTATATA
* *
71044410 TGTGGTAAGGCCGAATGGCCAAATTTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATG
1 TGTGATAAGGCCGAATGGCC-AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATG
71044475 GCCAATGTGATAAACGTGGAAGTGTATATA
65 GCCAATGTGATAAACGTGGAAGTGTATATA
71044505 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGG
*
71044570 CCAATGTGATAAACGTGGAAGTGTATATC
66 CCAATGTGATAAACGTGGAAGTGTATATA
71044599 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGG
71044664 CCAATGTGATAAACGTGGAAGTGTATATA
66 CCAATGTGATAAACGTGGAAGTGTATATA
71044693 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGG
* * * * *
71044758 CCAATGTGATGAATGT-GAACATGCATATG
66 CCAATGTGATAAACGTGGAA-GTGTATATA
**
71044787 TGTGATAAGGTAGAATGGCCAATGTGAT
1 TGTGATAAGGCCGAATGGCCAATGTGAT
71044815 AAACGTGGAA
Statistics
Matches: 390, Mismatches: 13, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
93 3 0.01
94 295 0.76
95 92 0.24
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (94 bp):
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGG
CCAATGTGATAAACGTGGAAGTGTATATA
Found at i:71048480 original size:39 final size:39
Alignment explanation
Indices: 71048397--71048491 Score: 104
Period size: 39 Copynumber: 2.5 Consensus size: 39
71048387 TGAAACCAAT
*
71048397 TACCAGCAC-AAGCCTGCGGGAATTTAAACCCGGTATAG
1 TACCAGCACGAAGCCTGCGGGAATTTAAACCCGGCATAG
* * * *
71048435 TACCAGCTCGAAGCCTGCGGGACTTT-AGCCCGGACATAT
1 TACCAGCACGAAGCCTGCGGGAATTTAAACCCGG-CATAG
* *
71048474 TTCCAGCACGTAGCCTGC
1 TACCAGCACGAAGCCTGC
71048492 AGACCTTAAG
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
38 14 0.30
39 33 0.70
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (39 bp):
TACCAGCACGAAGCCTGCGGGAATTTAAACCCGGCATAG
Found at i:71048507 original size:39 final size:39
Alignment explanation
Indices: 71048464--71048589 Score: 207
Period size: 39 Copynumber: 3.2 Consensus size: 39
71048454 GGACTTTAGC
* * * * *
71048464 CCGGACATATTTCCAGCACGTAGCCTGCAGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
71048503 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
71048542 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
71048581 CCGGATATA
1 CCGGATATA
71048590 CATCACTGAA
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 82 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:71050629 original size:29 final size:29
Alignment explanation
Indices: 71050569--71050726 Score: 223
Period size: 29 Copynumber: 5.5 Consensus size: 29
71050559 TATAGTAAGT
*
71050569 TCGCACACTTAGTG-TTATATAATCAAAC
1 TCGCACACTTAGTGCTTACATAATCAAAC
71050597 TCGCACACTTAGTGCTTACATAATCAAAC
1 TCGCACACTTAGTGCTTACATAATCAAAC
71050626 TCGCACACTTAGTGCTTACATAATCAAAC
1 TCGCACACTTAGTGCTTACATAATCAAAC
*
71050655 TCGCACACTTAGTGC-TATATAATCAAAC
1 TCGCACACTTAGTGCTTACATAATCAAAC
* * * *
71050683 TTGCACACTTAGTGCTATGCA-ATTTAAAC
1 TCGCACACTTAGTGCT-TACATAATCAAAC
*
71050712 CCGCACACTTAGTGC
1 TCGCACACTTAGTGC
71050727 CAATCTCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
28 40 0.34
29 76 0.64
30 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (29 bp):
TCGCACACTTAGTGCTTACATAATCAAAC
Found at i:71050677 original size:57 final size:58
Alignment explanation
Indices: 71050569--71050726 Score: 223
Period size: 57 Copynumber: 2.8 Consensus size: 58
71050559 TATAGTAAGT
*
71050569 TCGCACACTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAAC
1 TCGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAAC
*
71050626 TCGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAAC
1 TCGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAAC
* * * * *
71050683 TTGCACACTTAGTGCTATGCA-ATTTAAACCCGCACACTTAGTGC
1 TCGCACACTTAGTGCT-TACATAATCAAACTCGCACACTTAGTGC
71050727 CAATCTCATG
Statistics
Matches: 92, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
57 61 0.66
58 31 0.34
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (58 bp):
TCGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAAC
Found at i:71050717 original size:86 final size:86
Alignment explanation
Indices: 71050569--71050726 Score: 246
Period size: 86 Copynumber: 1.8 Consensus size: 86
71050559 TATAGTAAGT
* *
71050569 TCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACTCGCACAC
1 TCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACCCGCACAC
71050634 TTAGTGCTTACATAATCAAAC
66 TTAGTGCTTACATAATCAAAC
* * * *
71050655 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCA-ATTTAAACCCGCACA
1 TCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAACCCGCACA
71050719 CTTAGTGC
65 CTTAGTGC
71050727 CAATCTCATG
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
86 62 0.95
87 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (86 bp):
TCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACCCGCACAC
TTAGTGCTTACATAATCAAAC
Found at i:71065546 original size:136 final size:136
Alignment explanation
Indices: 71065300--71065575 Score: 462
Period size: 136 Copynumber: 2.0 Consensus size: 136
71065290 GCACTGCATT
*
71065300 ACTGGGTGAACCTATGAATAACCAAGAAAACTGTCAATCTTTCTGTTCAAAAGTTCTACCTGATT
1 ACTGGGTGAACCTATGAAGAACCAAGAAAACTGTCAATCTTTCTGTTCAAAAGTTCTACCTGATT
* * * * *
71065365 AGAGAGCATGGTGACTGAATCGACGTTAAAAATGTCGATTGTTTTCATTGGTGTTGTCCTCATAA
66 AGAGAGCATGGTGACTGAATCAACGTTAAAAACGCCGACTATTTTCATTGGTGTTGTCCTCATAA
71065430 CTTACC
131 CTTACC
*
71065436 ACTGGGTGAACCTGTGAAGAACCAAGAAAACTGTCAATCTTTCTGTTCAAAAGTTCTACCTGATT
1 ACTGGGTGAACCTATGAAGAACCAAGAAAACTGTCAATCTTTCTGTTCAAAAGTTCTACCTGATT
* *
71065501 AGAGAGCATGGTGACTGAATCAACGTTAAAAACGCCGACTATTTTCGTTGGTGTTGTCCTTATAA
66 AGAGAGCATGGTGACTGAATCAACGTTAAAAACGCCGACTATTTTCATTGGTGTTGTCCTCATAA
*
71065566 CTTGCC
131 CTTACC
71065572 ACTG
1 ACTG
71065576 ATAATTATTC
Statistics
Matches: 130, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
136 130 1.00
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (136 bp):
ACTGGGTGAACCTATGAAGAACCAAGAAAACTGTCAATCTTTCTGTTCAAAAGTTCTACCTGATT
AGAGAGCATGGTGACTGAATCAACGTTAAAAACGCCGACTATTTTCATTGGTGTTGTCCTCATAA
CTTACC
Found at i:71067557 original size:13 final size:13
Alignment explanation
Indices: 71067539--71067563 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71067529 GCTCAGCAAG
71067539 GACACGCCCGTGT
1 GACACGCCCGTGT
71067552 GACACGCCCGTG
1 GACACGCCCGTG
71067564 CGCGATTACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.40, G:0.32, T:0.12
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:71069784 original size:28 final size:28
Alignment explanation
Indices: 71069752--71069821 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
71069742 ACGATCTAAC
*
71069752 ACACGCCCGTGTCTCTTACACGGCCATG
1 ACACGCCCGTGTCTCTCACACGGCCATG
*
71069780 ACACGCCCATGTCTCTCACACGGCCATG
1 ACACGCCCGTGTCTCTCACACGGCCATG
* *
71069808 GCACACCCGTGTCT
1 ACACGCCCGTGTCT
71069822 AAAAACTTTG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.19, C:0.41, G:0.20, T:0.20
Consensus pattern (28 bp):
ACACGCCCGTGTCTCTCACACGGCCATG
Found at i:71071014 original size:48 final size:44
Alignment explanation
Indices: 71070895--71071156 Score: 190
Period size: 48 Copynumber: 5.6 Consensus size: 44
71070885 AGGCCGACGC
* * * * *
71070895 CATGTTCCAAACATGGTCTTACACTAGCTCTCACATATACGTGTCGTTG
1 CATGTCCCAGACAT-GTCTTACACTA-C-CTCTCATATA--TGCCGATG
71070944 CTATGTCCCAGACATGGTCTTACACTGACAC-CTCTATATATGCCGATG
1 C-ATGTCCCAGACAT-GTCTTACACT-AC-CTCTC-ATATATGCCGATG
*
71070992 CCATGTCCCAGACATAGTCTTACACTCACACATCTC--GTA-GCCGATG
1 -CATGTCCCAGACAT-GTCTTACACT-AC-C-TCTCATATATGCCGATG
* * *
71071038 CATGTCCCAGAAATGTCTTACACTAGCTCTCATCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTACCTCTCATAT--ATGCCGATG
* * * *
71071084 CCATGTCCCAGAAATGGTCTTACACTAGCTCTCATAGTGTGGTCGATG
1 -CATGTCCCAGACAT-GTCTTACACTACCTCTCATA-TAT-GCCGATG
71071132 CATGTCCCAGACATGTCTTACACTA
1 CATGTCCCAGACATGTCTTACACTA
71071157 GCACACAAAT
Statistics
Matches: 182, Mismatches: 16, Indels: 33
0.79 0.07 0.14
Matches are distributed among these distances:
41 4 0.02
42 1 0.01
43 2 0.01
44 10 0.05
45 14 0.08
46 25 0.14
47 30 0.16
48 58 0.32
49 5 0.03
50 32 0.18
51 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTACCTCTCATATATGCCGATG
Found at i:71071072 original size:46 final size:48
Alignment explanation
Indices: 71070985--71071158 Score: 193
Period size: 46 Copynumber: 3.8 Consensus size: 48
71070975 CTCTATATAT
* * *
71070985 GCCGATGCCATGTCCCAGACATAGTCTTACACT--CACACATCTCGTA
1 GCCGATGCCATGTCCCAGAAATAGTCTTACACTAGCTCTCATCTCGTA
*
71071031 GCCGATG-CATGTCCCAGAAAT-GTCTTACACTAGCTCTCATCTC-AA
1 GCCGATGCCATGTCCCAGAAATAGTCTTACACTAGCTCTCATCTCGTA
* * *
71071076 TGCCGATGCCATGTCCCAGAAATGGTCTTACACTAGCTCTCATAGT-GTG
1 -GCCGATGCCATGTCCCAGAAATAGTCTTACACTAGCTCTCAT-CTCGTA
* *
71071125 GTCGATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 GCCGATGCCATGTCCCAGAAATAGTCTTACACTAGC
71071159 ACACAAATAA
Statistics
Matches: 112, Mismatches: 9, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
44 10 0.09
45 14 0.12
46 35 0.31
47 27 0.24
48 25 0.22
49 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGAAATAGTCTTACACTAGCTCTCATCTCGTA
Found at i:71071158 original size:94 final size:93
Alignment explanation
Indices: 71070887--71071160 Score: 283
Period size: 94 Copynumber: 2.9 Consensus size: 93
71070877 TGGAATCGAG
* * *
71070887 GCCGACGCCATGTTCCA-AACATGGTCTTACACTAGCTCTCACATATACGTGTCGTTGCTATGTC
1 GCCGATGCCATGTCCCAGAA-ATGGTCTTACACTAGCTCT--CATAT-CGTGTCGATGC-ATGTC
*
71070951 CCAGACATGGTCTTACACT-GACACCTCTATATAT
61 CCAGACAT-GTCTTACACTAG-CACCTCTACATAT
* * * * * *
71070985 GCCGATGCCATGTCCCAGACATAGTCTTACACT--CACACATCTCGTAGCCGATGCATGTCCCAG
1 GCCGATGCCATGTCCCAGAAATGGTCTTACACTAGCTCTCATATCGT-GTCGATGCATGTCCCAG
* *
71071048 AAATGTCTTACACTAGCTCTCATCT-CA-AT
65 ACATGTCTTACACTAGCAC-C-TCTACATAT
71071077 GCCGATGCCATGTCCCAGAAATGGTCTTACACTAGCTCTCATAGT-GTGGTCGATGCATGTCCCA
1 GCCGATGCCATGTCCCAGAAATGGTCTTACACTAGCTCTCATA-TCGT-GTCGATGCATGTCCCA
71071141 GACATGTCTTACACTAGCAC
64 GACATGTCTTACACTAGCAC
71071161 ACAAATAACC
Statistics
Matches: 147, Mismatches: 21, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
92 45 0.31
93 18 0.12
94 53 0.36
95 1 0.01
96 2 0.01
98 27 0.18
99 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (93 bp):
GCCGATGCCATGTCCCAGAAATGGTCTTACACTAGCTCTCATATCGTGTCGATGCATGTCCCAGA
CATGTCTTACACTAGCACCTCTACATAT
Found at i:71076950 original size:27 final size:27
Alignment explanation
Indices: 71076920--71077097 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
71076910 ATATTGAGCC
* * * *
71076920 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
71076947 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
71076974 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
71077002 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
71077029 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
71077056 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
71077083 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71077098 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:71077059 original size:82 final size:81
Alignment explanation
Indices: 71076941--71077096 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
71076931 TGCTATATAA
* *
71076941 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
71077006 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
71077023 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
71077087 CACTTAGTGC
65 CACTTAGTGC
71077097 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:71081336 original size:27 final size:27
Alignment explanation
Indices: 71081304--71081369 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 27
71081294 TAGTTGAACT
71081304 ATGACAAAGTGATAAAGTGTGCCAAAC
1 ATGACAAAGTGATAAAGTGTGCCAAAC
*
71081331 ATGACAAAGTGATAAAGTGTGCCAAAT
1 ATGACAAAGTGATAAAGTGTGCCAAAC
*
71081358 ATGGCAAAGTGA
1 ATGACAAAGTGA
71081370 AGTGTGACAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.44, C:0.12, G:0.24, T:0.20
Consensus pattern (27 bp):
ATGACAAAGTGATAAAGTGTGCCAAAC
Found at i:71088481 original size:27 final size:27
Alignment explanation
Indices: 71088439--71088500 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
71088429 TAGTTGAACT
*
71088439 ATGGCAAAGTGATAAAGTGTGCCAAAC
1 ATGGCAAACTGATAAAGTGTGCCAAAC
* *
71088466 ATGTCAAACTGATAAAGTGTGCCAAAT
1 ATGGCAAACTGATAAAGTGTGCCAAAC
71088493 ATGGCAAA
1 ATGGCAAA
71088501 GTGAAATGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.21
Consensus pattern (27 bp):
ATGGCAAACTGATAAAGTGTGCCAAAC
Found at i:71092020 original size:49 final size:47
Alignment explanation
Indices: 71091904--71092175 Score: 158
Period size: 48 Copynumber: 5.7 Consensus size: 47
71091894 AGGGTATAAT
** * *
71091904 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTCAACAATCAA
** * *
71091951 GTAGATGCCATGTCCTAGACATGGTCTTACACTAACT-AACGGAATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTCAAC--AATC-AA
* * * * *
71092000 GCCGATGCCATGTCCCAGACATGATCTTGCACTAGCTCTCACATATCCAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTC-AACA-AT-CAA
* * * * * * ** * **
71092050 GCCGCTGCTATGTCCCAGATATGGTCTTATACTGACACCTCTATACGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTCAACAAT-CAA
* * * * * * *
71092098 GCTGATGCTATGTCCCAGGCATGGCCTTACACTAACACATC--TCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTCAACAATC-AA
71092144 GCCGATG-CATGTCCCAGACAT-GTCTTACACTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTA
71092176 GCACACAAAT
Statistics
Matches: 174, Mismatches: 43, Indels: 19
0.74 0.18 0.08
Matches are distributed among these distances:
44 10 0.06
45 13 0.07
46 9 0.05
47 32 0.18
48 40 0.23
49 35 0.20
50 32 0.18
51 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTCAACAATCAA
Found at i:71097208 original size:17 final size:16
Alignment explanation
Indices: 71097182--71097214 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
71097172 CTTTAGCGCA
71097182 TTTGAATAAAAAAAAT
1 TTTGAATAAAAAAAAT
71097198 TTTGCAATAAAAAAAAT
1 TTTG-AATAAAAAAAAT
71097215 ATCAATATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.30
Consensus pattern (16 bp):
TTTGAATAAAAAAAAT
Found at i:71101204 original size:25 final size:25
Alignment explanation
Indices: 71101159--71101225 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 25
71101149 ATATGTTATG
71101159 TATATATATTTAATATTATATTAT-TTA
1 TATATATATTT--T-TTATATTATCTTA
71101186 TATATATATTTTTTCATATTATCTTA
1 TATATATATTTTTT-ATATTATCTTA
**
71101212 CGTATATATTTTTT
1 TATATATATTTTTT
71101226 TAATAACTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
24 2 0.06
25 8 0.22
26 15 0.42
27 11 0.31
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.61
Consensus pattern (25 bp):
TATATATATTTTTTATATTATCTTA
Found at i:71101244 original size:28 final size:28
Alignment explanation
Indices: 71101186--71101252 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
71101176 ATATTATTTA
* * *
71101186 TATATATATTTTTTCATATTATCTTACG
1 TATATATATTTTTTAATACTATATTACG
*
71101214 TATATAT-TTTTTTAATAACTATATTATG
1 TATATATATTTTTTAAT-ACTATATTACG
71101242 TATATACTATT
1 TATATA-TATT
71101253 ACCATATATC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
27 8 0.25
28 21 0.66
29 1 0.03
30 2 0.06
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (28 bp):
TATATATATTTTTTAATACTATATTACG
Found at i:71101443 original size:14 final size:14
Alignment explanation
Indices: 71101424--71101458 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
71101414 ATCATATGTG
*
71101424 TATATATATACTTT
1 TATATATATACTAT
*
71101438 TATATATATAGTAT
1 TATATATATACTAT
71101452 TATATAT
1 TATATAT
71101459 TATTATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.54
Consensus pattern (14 bp):
TATATATATACTAT
Found at i:71101444 original size:24 final size:23
Alignment explanation
Indices: 71101406--71101466 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 23
71101396 TTACCCCTTT
*
71101406 TATATTTTATCATATGT-GTATATA
1 TATATTTTAT-ATATATAGTAT-TA
71101430 TATACTTTTATATATATAGTATTA
1 TATA-TTTTATATATATAGTATTA
71101454 TATATTATTATAT
1 TATATT-TTATAT
71101467 TTATTATTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
23 2 0.06
24 21 0.64
25 10 0.30
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.56
Consensus pattern (23 bp):
TATATTTTATATATATAGTATTA
Found at i:71101482 original size:12 final size:12
Alignment explanation
Indices: 71101456--71101486 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
71101446 TAGTATTATA
*
71101456 TATTATTATATT
1 TATTATTATACT
71101468 TATTATTATACT
1 TATTATTATACT
71101480 TATTATT
1 TATTATT
71101487 TTCACTATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (12 bp):
TATTATTATACT
Found at i:71101483 original size:24 final size:24
Alignment explanation
Indices: 71101430--71101486 Score: 68
Period size: 22 Copynumber: 2.5 Consensus size: 24
71101420 TGTGTATATA
71101430 TATACTT-TTA-TATATATAGTAT
1 TATACTTATTATTATATATAGTAT
* *
71101452 TATA--TATTATTATATTTATTAT
1 TATACTTATTATTATATATAGTAT
71101474 TATACTTATTATT
1 TATACTTATTATT
71101487 TTCACTATTG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
20 1 0.03
21 3 0.10
22 18 0.62
24 7 0.24
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.60
Consensus pattern (24 bp):
TATACTTATTATTATATATAGTAT
Found at i:71101512 original size:12 final size:12
Alignment explanation
Indices: 71101456--71101514 Score: 52
Period size: 12 Copynumber: 5.1 Consensus size: 12
71101446 TAGTATTATA
* *
71101456 TATTATTATATT
1 TATTATTTTACT
*
71101468 TATTATTATACT
1 TATTATTTTACT
71101480 TATTATTTTCAC-
1 TATTATTTT-ACT
*
71101492 TA-T-TGTTACT
1 TATTATTTTACT
71101502 TATTATTTTACT
1 TATTATTTTACT
71101514 T
1 T
71101515 TAACATTATT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 2 0.05
10 5 0.13
11 2 0.05
12 28 0.72
13 2 0.05
ACGTcount: A:0.27, C:0.08, G:0.02, T:0.63
Consensus pattern (12 bp):
TATTATTTTACT
Found at i:71107165 original size:24 final size:24
Alignment explanation
Indices: 71107138--71107202 Score: 87
Period size: 25 Copynumber: 2.7 Consensus size: 24
71107128 CGAAAGAGTG
71107138 TCCCGTTATTAGCTCTTGTGAGCT
1 TCCCGTTATTAGCTCTTGTGAGCT
* *
71107162 TCCCGTTATATGGTTCTTGTGAGCT
1 TCCCGTTAT-TAGCTCTTGTGAGCT
*
71107187 TCCCATTA-TAGCTCTT
1 TCCCGTTATTAGCTCTT
71107203 CAGAGCATCC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
23 6 0.17
24 9 0.26
25 20 0.57
ACGTcount: A:0.14, C:0.25, G:0.18, T:0.43
Consensus pattern (24 bp):
TCCCGTTATTAGCTCTTGTGAGCT
Found at i:71107792 original size:25 final size:25
Alignment explanation
Indices: 71107733--71107782 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
71107723 ATTTCTTGGT
*
71107733 ATTAATATGAATTATGTAACTAACA
1 ATTAATATGAACTATGTAACTAACA
71107758 ATTAATATGAACTATGTAACTAACA
1 ATTAATATGAACTATGTAACTAACA
71107783 TGTTTGATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.48, C:0.10, G:0.08, T:0.34
Consensus pattern (25 bp):
ATTAATATGAACTATGTAACTAACA
Found at i:71108748 original size:20 final size:20
Alignment explanation
Indices: 71108719--71108757 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
71108709 TTATACCTAA
71108719 GAAAAATTTTGAAATTTCGT
1 GAAAAATTTTGAAATTTCGT
*
71108739 GAAAATTTTTGAAATTTCG
1 GAAAAATTTTGAAATTTCG
71108758 CAAAAATTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.05, G:0.15, T:0.41
Consensus pattern (20 bp):
GAAAAATTTTGAAATTTCGT
Found at i:71108763 original size:20 final size:20
Alignment explanation
Indices: 71108720--71108765 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
71108710 TATACCTAAG
*
71108720 AAAAA-TTTTGAAATTTCGT
1 AAAAATTTTTGAAATTTCGC
*
71108739 GAAAATTTTTGAAATTTCGC
1 AAAAATTTTTGAAATTTCGC
71108759 AAAAATT
1 AAAAATT
71108766 CTCTGAGTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39
Consensus pattern (20 bp):
AAAAATTTTTGAAATTTCGC
Found at i:71112878 original size:43 final size:43
Alignment explanation
Indices: 71112812--71112894 Score: 107
Period size: 43 Copynumber: 1.9 Consensus size: 43
71112802 AAATCGTACA
** *
71112812 ATGCCAACTTCCCAGACCTGGTCTTACAT-GTAACCACATATCG
1 ATGCCAACTTCCCAGACAGGGTCTTAC-TCGTAAACACATATCG
71112855 ATGCC-ACTGTCCCAGACAGGGTCTTACTCGTAAACACATA
1 ATGCCAACT-TCCCAGACAGGGTCTTACTCGTAAACACATA
71112895 CCAGAATCAC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
42 4 0.11
43 31 0.89
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (43 bp):
ATGCCAACTTCCCAGACAGGGTCTTACTCGTAAACACATATCG
Found at i:71116657 original size:29 final size:28
Alignment explanation
Indices: 71116612--71116670 Score: 100
Period size: 29 Copynumber: 2.1 Consensus size: 28
71116602 ATTGCATGAC
*
71116612 TACGAATGTGTTTGGGCCTAATGGGCCA
1 TACGAATATGTTTGGGCCTAATGGGCCA
71116640 TACGAATATGATTTGGGCCTAATGGGCCA
1 TACGAATATG-TTTGGGCCTAATGGGCCA
71116669 TA
1 TA
71116671 TGAAAGAGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 9 0.31
29 20 0.69
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (28 bp):
TACGAATATGTTTGGGCCTAATGGGCCA
Found at i:71116681 original size:29 final size:29
Alignment explanation
Indices: 71116622--71116700 Score: 90
Period size: 29 Copynumber: 2.8 Consensus size: 29
71116612 TACGAATGTG
* *
71116622 TTTGGGCCTAATGGGCCATACGAATATGA
1 TTTGGGCCTAATGGGCCATATGAATAAGA
71116651 TTTGGGCCTAATGGGCCATATGAA-AGAGA
1 TTTGGGCCTAATGGGCCATATGAATA-AGA
* * *
71116680 -TTGAGCCTAGTGGGTCATATG
1 TTTGGGCCTAATGGGCCATATG
71116701 CATGTATGCG
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
28 19 0.43
29 25 0.57
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (29 bp):
TTTGGGCCTAATGGGCCATATGAATAAGA
Found at i:71139512 original size:41 final size:41
Alignment explanation
Indices: 71139441--71139521 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
71139431 GAGCCTAATA
* *
71139441 TCCTTTGTGTCGCCACTACCCTTTCTACTCGGTCAATTCTC
1 TCCTCTGTGTCGCCACTACCCTTTCCACTCGGTCAATTCTC
*
71139482 TCCTCTGTTTCGCCACTACCCTTTCCACTCGGTCAATTCT
1 TCCTCTGTGTCGCCACTACCCTTTCCACTCGGTCAATTCT
71139522 AGTGTAAGTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.12, C:0.38, G:0.11, T:0.38
Consensus pattern (41 bp):
TCCTCTGTGTCGCCACTACCCTTTCCACTCGGTCAATTCTC
Found at i:71140019 original size:16 final size:16
Alignment explanation
Indices: 71139994--71140030 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
71139984 GTAGATCAGC
*
71139994 AAAAGTCGAAATGCGG
1 AAAAGCCGAAATGCGG
*
71140010 AAAAGCCGAAATGCTG
1 AAAAGCCGAAATGCGG
71140026 AAAAG
1 AAAAG
71140031 TCAAAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.49, C:0.14, G:0.27, T:0.11
Consensus pattern (16 bp):
AAAAGCCGAAATGCGG
Found at i:71140356 original size:28 final size:29
Alignment explanation
Indices: 71140245--71140364 Score: 134
Period size: 29 Copynumber: 4.2 Consensus size: 29
71140235 GAAAGCATGT
* * *
71140245 ATATGAATGTGATTTGGGCCTAATAGGTC
1 ATATGAATGAGATTTGGGCCTAATGGGCC
* * **
71140274 GTACGAATTTGATTTGGGCCTAATGGGCC
1 ATATGAATGAGATTTGGGCCTAATGGGCC
** *
71140303 ATACAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGAGATTTGGGCCTAATGGGCC
*
71140332 ATATGAATGAGA-TTGGGCTTAATGGGCC
1 ATATGAATGAGATTTGGGCCTAATGGGCC
71140360 ATATG
1 ATATG
71140365 CATCTATGTA
Statistics
Matches: 79, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
28 20 0.25
29 59 0.75
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (29 bp):
ATATGAATGAGATTTGGGCCTAATGGGCC
Found at i:71148773 original size:30 final size:30
Alignment explanation
Indices: 71148737--71148828 Score: 184
Period size: 30 Copynumber: 3.1 Consensus size: 30
71148727 AATCGAAAGT
71148737 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAAACTAGC
71148767 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAAACTAGC
71148797 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAAACTAGC
71148827 TT
1 TT
71148829 CGGCTACTTG
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (30 bp):
TTTGGCACTAAGTGTGCGATTTAAACTAGC
Found at i:71154944 original size:42 final size:42
Alignment explanation
Indices: 71154814--71154949 Score: 128
Period size: 42 Copynumber: 3.1 Consensus size: 42
71154804 CATGGGCCCA
* *
71154814 CATATCAATGCCATATCCCAGAAATGGTCTTATACGAAGTCT
1 CATATCAATGCCATATCCCAGAAATGGTCTTACACGAAATCT
* * * * *
71154856 CATGTCGGTGCCGATGCCATGTCCCAGACATGGTCTTACACAAAATCT
1 CA--T--AT--CAATGCCATATCCCAGAAATGGTCTTACACGAAATCT
* * *
71154904 CATATCAATGCCATATCCCAGATATGGTCTTACATGAAATCA
1 CATATCAATGCCATATCCCAGAAATGGTCTTACACGAAATCT
71154946 CATA
1 CATA
71154950 CCGATGCCGA
Statistics
Matches: 74, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
42 37 0.50
44 2 0.03
46 2 0.03
48 33 0.45
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAGAAATGGTCTTACACGAAATCT
Found at i:71154958 original size:90 final size:89
Alignment explanation
Indices: 71154814--71154985 Score: 236
Period size: 90 Copynumber: 1.9 Consensus size: 89
71154804 CATGGGCCCA
* * * ** * *
71154814 CATATCAATGCCATATCCCAGAAATGGTCTTATACGAAGTCTCATGTCGGTGCCGATGCCATGTC
1 CATATCAATGCCATATCCCAGAAATGGTCTTACACGAAATCACATACCGATGCCGATGCCATAT-
71154879 CCAGACATGGTCTTACACAAAATCT
65 CCAGACATGGTCTTACACAAAATCT
* *
71154904 CATATCAATGCCATATCCCAGATATGGTCTTACATGAAATCACATACCGATGCCGATGCCATATC
1 CATATCAATGCCATATCCCAGAAATGGTCTTACACGAAATCACATACCGATGCCGATGCCATATC
* *
71154969 TAGATATGGTCTTACAC
66 CAGACATGGTCTTACAC
71154986 TGACACACAT
Statistics
Matches: 71, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
89 16 0.23
90 55 0.77
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (89 bp):
CATATCAATGCCATATCCCAGAAATGGTCTTACACGAAATCACATACCGATGCCGATGCCATATC
CAGACATGGTCTTACACAAAATCT
Found at i:71154967 original size:48 final size:48
Alignment explanation
Indices: 71154821--71155121 Score: 174
Period size: 48 Copynumber: 6.4 Consensus size: 48
71154811 CCACATATCA
* * * * * *
71154821 ATGCCATATCCCAGAAATGGTCTTATACGAAGTCTCATGTCGGTGCCG
1 ATGCCATATCCCAGACATGGTCTTACACGAAATCACATATCGATGCCG
* * *
71154869 ATGCCATGTCCCAGACATGGTCTTACACAAAATCTCATATC-A-----
1 ATGCCATATCCCAGACATGGTCTTACACGAAATCACATATCGATGCCG
* * *
71154911 ATGCCATATCCCAGATATGGTCTTACATGAAATCACATACCGATGCCG
1 ATGCCATATCCCAGACATGGTCTTACACGAAATCACATATCGATGCCG
* * * * **
71154959 ATGCCATAT-CTAGATATGGTCTTACACTGACA-CACATATCAACACCG
1 ATGCCATATCCCAGACATGGTCTTACAC-GAAATCACATATCGATGCCG
* ** * * * **
71155006 ATGCCATA-CCTCAGACATGGTCGTACACTG-GCTCTCACATCAACACCG
1 ATGCCATATCC-CAGACATGGTCTTACAC-GAAATCACATATCGATGCCG
* * ** * *
71155054 ATGCTATGTCCCAGACATGGTCTTACACTG-GCTCTCATCTCAGATGCCG
1 ATGCCATATCCCAGACATGGTCTTACAC-GAAATCACATATC-GATGCCG
* *
71155103 ATGCCATGTCCCAAACATG
1 ATGCCATATCCCAGACATG
71155122 ATTTTACATA
Statistics
Matches: 204, Mismatches: 37, Indels: 23
0.77 0.14 0.09
Matches are distributed among these distances:
42 35 0.17
43 1 0.00
47 36 0.18
48 109 0.53
49 23 0.11
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (48 bp):
ATGCCATATCCCAGACATGGTCTTACACGAAATCACATATCGATGCCG
Found at i:71156484 original size:71 final size:71
Alignment explanation
Indices: 71156368--71156516 Score: 298
Period size: 71 Copynumber: 2.1 Consensus size: 71
71156358 CTCCCAAGCC
71156368 TGTAAAGATTTGAGGAAATCGACATCGGGAAGTGTATTCGTCCTAGGTGGTGGAGTCATAGTATG
1 TGTAAAGATTTGAGGAAATCGACATCGGGAAGTGTATTCGTCCTAGGTGGTGGAGTCATAGTATG
71156433 GAGAAG
66 GAGAAG
71156439 TGTAAAGATTTGAGGAAATCGACATCGGGAAGTGTATTCGTCCTAGGTGGTGGAGTCATAGTATG
1 TGTAAAGATTTGAGGAAATCGACATCGGGAAGTGTATTCGTCCTAGGTGGTGGAGTCATAGTATG
71156504 GAGAAG
66 GAGAAG
71156510 TGTAAAG
1 TGTAAAG
71156517 CAAACTTGCA
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 78 1.00
ACGTcount: A:0.30, C:0.09, G:0.34, T:0.27
Consensus pattern (71 bp):
TGTAAAGATTTGAGGAAATCGACATCGGGAAGTGTATTCGTCCTAGGTGGTGGAGTCATAGTATG
GAGAAG
Found at i:71157027 original size:15 final size:15
Alignment explanation
Indices: 71157007--71157036 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
71156997 TTCACTATTA
*
71157007 TGTCTTTTGTATTTT
1 TGTCTTTTATATTTT
71157022 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
71157037 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.07, G:0.10, T:0.73
Consensus pattern (15 bp):
TGTCTTTTATATTTT
Found at i:71158238 original size:26 final size:26
Alignment explanation
Indices: 71158202--71158255 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
71158192 TTGATCAAGT
71158202 AAAATTAAATTAATCAAATTCATTAA
1 AAAATTAAATTAATCAAATTCATTAA
71158228 AAAATTAAATTAATCAAATTCATTAA
1 AAAATTAAATTAATCAAATTCATTAA
71158254 AA
1 AA
71158256 TTCATTTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.33
Consensus pattern (26 bp):
AAAATTAAATTAATCAAATTCATTAA
Found at i:71158252 original size:13 final size:13
Alignment explanation
Indices: 71158210--71158253 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
71158200 GTAAAATTAA
71158210 ATTAATCAAATTC
1 ATTAATCAAATTC
* *
71158223 ATTAA-AAAATTAA
1 ATTAATCAAATT-C
71158236 ATTAATCAAATTC
1 ATTAATCAAATTC
71158249 ATTAA
1 ATTAA
71158254 AATTCATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
12 5 0.20
13 15 0.60
14 5 0.20
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (13 bp):
ATTAATCAAATTC
Done.