Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 216 of 333
Found at i:71160565 original size:20 final size:20
Alignment explanation
Indices: 71160537--71160581 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
71160527 TATCGATCTA
*
71160537 GTATCGATACT-TTTCTTAAG
1 GTATCGATA-TATTTCCTAAG
*
71160557 GTATTGATATATTTCCTAAG
1 GTATCGATATATTTCCTAAG
71160577 GTATC
1 GTATC
71160582 AATGTTCCTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 1 0.05
20 20 0.95
ACGTcount: A:0.27, C:0.13, G:0.16, T:0.44
Consensus pattern (20 bp):
GTATCGATATATTTCCTAAG
Found at i:71170119 original size:34 final size:35
Alignment explanation
Indices: 71170081--71170147 Score: 100
Period size: 36 Copynumber: 1.9 Consensus size: 35
71170071 TATTAAAAGT
71170081 TAAAAATTTA-AAAAATTAAAAAATATATATAATA
1 TAAAAATTTACAAAAATTAAAAAATATATATAATA
**
71170115 TAAAAATTTACTAAAAATTTTAAAATATATATA
1 TAAAAATTTAC-AAAAATTAAAAAATATATATA
71170148 TTAGAAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 10 0.34
36 19 0.66
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (35 bp):
TAAAAATTTACAAAAATTAAAAAATATATATAATA
Found at i:71170156 original size:34 final size:35
Alignment explanation
Indices: 71170081--71170172 Score: 104
Period size: 34 Copynumber: 2.7 Consensus size: 35
71170071 TATTAAAAGT
**
71170081 TAAAAATTTA-AAAAATTAAAAAATATATATAATA
1 TAAAAATTTATAAAAATTTTAAAATATATATAATA
71170115 TAAAAATTTACTAAAAATTTTAAAATATATAT-AT-
1 TAAAAATTTA-TAAAAATTTTAAAATATATATAATA
*
71170149 TAGAAATTT-T-AAAATCTTTAAAAT
1 TAAAAATTTATAAAAAT-TTTAAAAT
71170173 TTTCTAAATC
Statistics
Matches: 52, Mismatches: 3, Indels: 8
0.83 0.05 0.13
Matches are distributed among these distances:
31 5 0.10
32 9 0.17
34 18 0.35
35 2 0.04
36 18 0.35
ACGTcount: A:0.59, C:0.02, G:0.01, T:0.38
Consensus pattern (35 bp):
TAAAAATTTATAAAAATTTTAAAATATATATAATA
Found at i:71170347 original size:29 final size:31
Alignment explanation
Indices: 71170315--71170382 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 31
71170305 AGATAAATTT
* * *
71170315 TTTTAATTT-ATTTAAATAATAA-AAAATAA
1 TTTTAATTTCAATTAAATAAGAATAAAACAA
71170344 TTTT-ATTTCAATTAAATAAGAATTAAAACAA
1 TTTTAATTTCAATTAAATAAGAA-TAAAACAA
71170375 TTTTAATT
1 TTTTAATT
71170383 ATTCTAGATA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
28 4 0.12
29 15 0.47
31 10 0.31
32 3 0.09
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (31 bp):
TTTTAATTTCAATTAAATAAGAATAAAACAA
Found at i:71171115 original size:16 final size:16
Alignment explanation
Indices: 71171094--71171142 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
71171084 TCTTACAATA
*
71171094 TTTTTACATTTTTTAT
1 TTTTTACAATTTTTAT
*
71171110 TTTTTATAATTTTTAT
1 TTTTTACAATTTTTAT
*
71171126 AATTTTTAAAATTTTTA
1 --TTTTTACAATTTTTA
71171143 AAAATTCTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 14 0.50
18 14 0.50
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTTACAATTTTTAT
Found at i:71171122 original size:8 final size:9
Alignment explanation
Indices: 71171055--71171203 Score: 89
Period size: 9 Copynumber: 16.6 Consensus size: 9
71171045 ATTTACAATC
*
71171055 TTTTACAAT
1 TTTTATAAT
*
71171064 TTCTAATAAT
1 TT-TTATAAT
71171074 TTTTATAAT
1 TTTTATAAT
*
71171083 TTCTTACAAT
1 TT-TTATAAT
71171093 ATTTT-TACAT
1 -TTTTATA-AT
*
71171103 TTTT-TATT
1 TTTTATAAT
71171111 TTTTATAAT
1 TTTTATAAT
71171120 TTTTATAAT
1 TTTTATAAT
*
71171129 TTTTAAAAT
1 TTTTATAAT
* *
71171138 TTTTAAAAA
1 TTTTATAAT
*
71171147 TTCTA-ACAT
1 TTTTATA-AT
71171156 ATTTT-TAA-
1 -TTTTATAAT
71171164 TTTT-TAAT
1 TTTTATAAT
71171172 TTTTA-AATTT
1 TTTTATAA--T
*
71171182 TTTTGTAAT
1 TTTTATAAT
71171191 TTTTAT-AT
1 TTTTATAAT
71171199 TTTTA
1 TTTTA
71171204 AAGTTTTTTA
Statistics
Matches: 113, Mismatches: 14, Indels: 27
0.73 0.09 0.18
Matches are distributed among these distances:
7 7 0.06
8 19 0.17
9 57 0.50
10 26 0.23
11 4 0.04
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (9 bp):
TTTTATAAT
Found at i:71171174 original size:6 final size:7
Alignment explanation
Indices: 71171156--71171204 Score: 57
Period size: 7 Copynumber: 7.1 Consensus size: 7
71171146 ATTCTAACAT
71171156 ATTTTTA
1 ATTTTTA
71171163 ATTTTTA
1 ATTTTTA
71171170 ATTTTTA
1 ATTTTTA
*
71171177 AATTTT-
1 ATTTTTA
*
71171183 -TTTGTA
1 ATTTTTA
71171189 ATTTTTA
1 ATTTTTA
71171196 TATTTTTA
1 -ATTTTTA
71171204 A
1 A
71171205 AGTTTTTTAG
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
5 3 0.09
7 25 0.71
8 7 0.20
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (7 bp):
ATTTTTA
Found at i:71174312 original size:29 final size:29
Alignment explanation
Indices: 71174275--71174380 Score: 97
Period size: 29 Copynumber: 3.4 Consensus size: 29
71174265 ATGAGCCTAA
71174275 TATTGTATTTATTAGGTCTTATTATTTCAT
1 TATT-TATTTATTAGGTCTTATTATTTCAT
* * *
71174305 TATTTATTTATTATGAATTTTGGATATATTGT-TT
1 TATTTATTTATTA-G-GTCTT--AT-TATT-TCAT
**
71174339 TAAGTATTTATTAGGTCTTATTATTTCAT
1 TATTTATTTATTAGGTCTTATTATTTCAT
71174368 TATTTATTTATTA
1 TATTTATTTATTA
71174381 TGAATTTTGG
Statistics
Matches: 59, Mismatches: 10, Indels: 15
0.70 0.12 0.18
Matches are distributed among these distances:
28 1 0.02
29 25 0.42
30 7 0.12
31 3 0.05
32 3 0.05
33 3 0.05
34 16 0.27
35 1 0.02
ACGTcount: A:0.26, C:0.04, G:0.09, T:0.60
Consensus pattern (29 bp):
TATTTATTTATTAGGTCTTATTATTTCAT
Found at i:71174352 original size:63 final size:63
Alignment explanation
Indices: 71174279--71174410 Score: 264
Period size: 63 Copynumber: 2.1 Consensus size: 63
71174269 GCCTAATATT
71174279 GTATTTATTAGGTCTTATTATTTCATTATTTATTTATTATGAATTTTGGATATATTGTTTTAA
1 GTATTTATTAGGTCTTATTATTTCATTATTTATTTATTATGAATTTTGGATATATTGTTTTAA
71174342 GTATTTATTAGGTCTTATTATTTCATTATTTATTTATTATGAATTTTGGATATATTGTTTTAA
1 GTATTTATTAGGTCTTATTATTTCATTATTTATTTATTATGAATTTTGGATATATTGTTTTAA
71174405 GTATTT
1 GTATTT
71174411 TAAGTTATTT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 69 1.00
ACGTcount: A:0.27, C:0.03, G:0.11, T:0.59
Consensus pattern (63 bp):
GTATTTATTAGGTCTTATTATTTCATTATTTATTTATTATGAATTTTGGATATATTGTTTTAA
Found at i:71179347 original size:18 final size:17
Alignment explanation
Indices: 71179287--71179348 Score: 54
Period size: 19 Copynumber: 3.4 Consensus size: 17
71179277 ATATTTTGAT
71179287 ATACC-AAATTTTAAAATG
1 ATACCAAAATTTT--AATG
*
71179305 TATACCAAAATCTTTAACAG
1 -ATACCAAAAT-TTTAA-TG
71179325 ATACCAAAATTTCTAATG
1 ATACCAAAATTT-TAATG
71179343 ATACCA
1 ATACCA
71179349 CCAAAATTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
18 9 0.24
19 20 0.54
20 5 0.14
21 3 0.08
ACGTcount: A:0.47, C:0.18, G:0.05, T:0.31
Consensus pattern (17 bp):
ATACCAAAATTTTAATG
Found at i:71182151 original size:19 final size:20
Alignment explanation
Indices: 71182127--71182169 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
71182117 TAATCAACTT
* *
71182127 AAAAATTGGACCTGAG-ATC
1 AAAAATTGAACCGGAGAATC
71182146 AAAAATTGAACCGGAGAATC
1 AAAAATTGAACCGGAGAATC
71182166 AAAA
1 AAAA
71182170 CTCGAGACTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.51, C:0.14, G:0.19, T:0.16
Consensus pattern (20 bp):
AAAAATTGAACCGGAGAATC
Found at i:71189511 original size:26 final size:26
Alignment explanation
Indices: 71189471--71189526 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
71189461 CTTATTAGAC
71189471 GTTAGGTGTTATATGTGCTTGGTTGA
1 GTTAGGTGTTATATGTGCTTGGTTGA
* *
71189497 GTTAGGTGTTCTATGTGGTTGGTTGA
1 GTTAGGTGTTATATGTGCTTGGTTGA
71189523 GTTA
1 GTTA
71189527 AAGCAGCCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.14, C:0.04, G:0.36, T:0.46
Consensus pattern (26 bp):
GTTAGGTGTTATATGTGCTTGGTTGA
Found at i:71190741 original size:34 final size:34
Alignment explanation
Indices: 71190696--71190761 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
71190686 TACTTATATC
* *
71190696 TTACTTCTAAATTGCAACTTCACCTCAGTATGTG
1 TTACTTATAAATTACAACTTCACCTCAGTATGTG
* **
71190730 TTACTTATAAATTACAATTTCGTCTCAGTATG
1 TTACTTATAAATTACAACTTCACCTCAGTATG
71190762 CAAATTTTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.29, C:0.20, G:0.11, T:0.41
Consensus pattern (34 bp):
TTACTTATAAATTACAACTTCACCTCAGTATGTG
Found at i:71191607 original size:40 final size:40
Alignment explanation
Indices: 71191548--71191627 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
71191538 ACTTCCAGTC
** *
71191548 TAAGGAAAGAGTTATCCTAAATCCAAAGCCAATTTTAATG
1 TAAGGAAAGAGCAACCCTAAATCCAAAGCCAATTTTAATG
71191588 TAAGGAAAGAGCAACCCTAAATCCAAAGCCAATTTTAATG
1 TAAGGAAAGAGCAACCCTAAATCCAAAGCCAATTTTAATG
71191628 GTTCGTGATT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.24
Consensus pattern (40 bp):
TAAGGAAAGAGCAACCCTAAATCCAAAGCCAATTTTAATG
Found at i:71191959 original size:26 final size:26
Alignment explanation
Indices: 71191923--71191973 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
71191913 ATTGGCAAGT
*
71191923 CATATAAATAAATATATCTTACAATC
1 CATATAAATAAATATATCTCACAATC
71191949 CATATAAATAAATATATCTCACAAT
1 CATATAAATAAATATATCTCACAAT
71191974 TTACAAGTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.33
Consensus pattern (26 bp):
CATATAAATAAATATATCTCACAATC
Found at i:71196371 original size:22 final size:19
Alignment explanation
Indices: 71196340--71196389 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 19
71196330 ATATTTTGAT
71196340 TTTTCTAAAATTTAAATTTATA
1 TTTT-TAAAATTT-AATTT-TA
*
71196362 TATTTTAAAATTTTATTTTA
1 T-TTTTAAAATTTAATTTTA
71196382 TTTTTAAA
1 TTTTTAAA
71196390 CTTTTTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 7 0.27
20 3 0.12
21 4 0.15
22 9 0.35
23 3 0.12
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTTTAAAATTTAATTTTA
Found at i:71197773 original size:11 final size:10
Alignment explanation
Indices: 71197751--71197820 Score: 59
Period size: 10 Copynumber: 6.7 Consensus size: 10
71197741 AGAGTTTTTT
*
71197751 TTTATTATAA
1 TTTAATATAA
71197761 TTTAATCATAA
1 TTTAAT-ATAA
71197772 TTTAATATAA
1 TTTAATATAA
* *
71197782 TTATTATTTAA
1 TT-TAATATAA
* *
71197793 TATAATTATTA
1 TTTAA-TATAA
*
71197804 TTAAATATAA
1 TTTAATATAA
71197814 TTTAATA
1 TTTAATA
71197821 AAAATAAAAA
Statistics
Matches: 46, Mismatches: 11, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
10 23 0.50
11 23 0.50
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (10 bp):
TTTAATATAA
Found at i:71197782 original size:16 final size:16
Alignment explanation
Indices: 71197752--71197815 Score: 83
Period size: 16 Copynumber: 3.9 Consensus size: 16
71197742 GAGTTTTTTT
* *
71197752 TTATTATAATTTAATCA
1 TTATT-TAATATAATTA
*
71197769 TAATTTAATATAATTA
1 TTATTTAATATAATTA
71197785 TTATTTAATATAATTA
1 TTATTTAATATAATTA
*
71197801 TTATTAAATATAATT
1 TTATTTAATATAATT
71197816 TAATAAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
16 38 0.90
17 4 0.10
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (16 bp):
TTATTTAATATAATTA
Found at i:71206274 original size:114 final size:109
Alignment explanation
Indices: 71206026--71206437 Score: 488
Period size: 114 Copynumber: 3.7 Consensus size: 109
71206016 GTGTATTTTA
* * * ** * * * *
71206026 TTAAGTGTGCATTAAAAGTATGATTTGTTTGTTTTATTATTGTTTTTATGATATCTTATATCAGT
1 TTAAGTTTGTATTAAAGGTATGATTAATTTGTTTTATTAATGTTTTTGTGGTATCTTATATTAGT
* ** * * *
71206091 TTTATGTATTTAAGATAAATAAATTTTTTATTGTGTTTTATTAGAT
66 TTTTTGTATTTAAG-GGAA-AATTTTTTTTTTGTGTTTTATTAGGT
* *
71206137 TTAAGTTTGTATTAACA-GCATGATTAGTTTGTTTTATTAATGTTTTTGTGGTATCTTATATTAG
1 TTAAGTTTGTATTAA-AGGTATGATTAATTTGTTTTATTAATGTTTTTGTGGTATCTTATATTAG
*
71206201 TTTTTTTGTATTTAAAGGGAAGGACATTTTTTTTTTGTGTTTAATTAGGT
65 -TTTTTTGTATTT-AAGGGAA--A-ATTTTTTTTTTGTGTTTTATTAGGT
*
71206251 TTAAGTTTGTATTAAAGGTATGATTAATTTGTTTTATTAATGTTTTTGTGGTATCTTATATTAAT
1 TTAAGTTTGTATTAAAGGTATGATTAATTTGTTTTATTAATGTTTTTGTGGTATCTTATATTAGT
* *
71206316 TTTTTGTATTTAAGGG-AAATATTATTTTTGTGTTTTATTAGGT
66 TTTTTGTATTTAAGGGAAAATTTTTTTTTTGTGTTTTATTAGGT
* ** **
71206359 TTAAGTTTATATTAAAGGTATGATTAATTT-TTTTATTAATGTTTTTGAAGTATCTTATATCGGT
1 TTAAGTTTGTATTAAAGGTATGATTAATTTGTTTTATTAATGTTTTTGTGGTATCTTATATTAGT
*
71206423 TTTTCGTATTTAAGG
66 TTTTTGTATTTAAGG
71206438 TATGAATATA
Statistics
Matches: 266, Mismatches: 29, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
107 43 0.16
108 51 0.19
109 1 0.00
111 55 0.21
112 19 0.07
113 17 0.06
114 80 0.30
ACGTcount: A:0.26, C:0.03, G:0.16, T:0.55
Consensus pattern (109 bp):
TTAAGTTTGTATTAAAGGTATGATTAATTTGTTTTATTAATGTTTTTGTGGTATCTTATATTAGT
TTTTTGTATTTAAGGGAAAATTTTTTTTTTGTGTTTTATTAGGT
Found at i:71207310 original size:14 final size:15
Alignment explanation
Indices: 71207284--71207318 Score: 63
Period size: 14 Copynumber: 2.4 Consensus size: 15
71207274 ATTTTCATTA
71207284 TTATTTAAAAATAAT
1 TTATTTAAAAATAAT
71207299 TTATTT-AAAATAAT
1 TTATTTAAAAATAAT
71207313 TTATTT
1 TTATTT
71207319 TTAATATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.70
15 6 0.30
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TTATTTAAAAATAAT
Found at i:71207402 original size:36 final size:35
Alignment explanation
Indices: 71207352--71207419 Score: 91
Period size: 36 Copynumber: 1.9 Consensus size: 35
71207342 TTTTTTAGTT
* *
71207352 ATTATTTAACAAAAACATAATTTTAATTTATTTTTC
1 ATTATTTAACAAAAACAGAAATTTAA-TTATTTTTC
* *
71207388 ATTATTTAATAAAAATAGAAATTTAATTATTT
1 ATTATTTAACAAAAACAGAAATTTAATTATTT
71207420 AATATATTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 6 0.21
36 22 0.79
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.49
Consensus pattern (35 bp):
ATTATTTAACAAAAACAGAAATTTAATTATTTTTC
Found at i:71213406 original size:43 final size:43
Alignment explanation
Indices: 71213359--71213446 Score: 133
Period size: 43 Copynumber: 2.0 Consensus size: 43
71213349 TTTTTGAGCA
* *
71213359 TATTTTAAAATTTTT-CTTTTTTCACTCTCAATTCTTTTAGCCC
1 TATTTT-AAATTTTTGCTCTTTTCACTCTCAATGCTTTTAGCCC
*
71213402 TATTTTTAATTTTTGCTCTTTTCACTCTCAATGCTTTTAGCCC
1 TATTTTAAATTTTTGCTCTTTTCACTCTCAATGCTTTTAGCCC
71213445 TA
1 TA
71213447 ACCATGCTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
42 7 0.17
43 34 0.83
ACGTcount: A:0.19, C:0.22, G:0.05, T:0.55
Consensus pattern (43 bp):
TATTTTAAATTTTTGCTCTTTTCACTCTCAATGCTTTTAGCCC
Found at i:71217654 original size:10 final size:10
Alignment explanation
Indices: 71217627--71217676 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
71217617 TTAAATTCTA
71217627 AAAGATAAAT
1 AAAGATAAAT
*
71217637 -ACGAATAAAT
1 AAAG-ATAAAT
*
71217647 AAAGATAATT
1 AAAGATAAAT
71217657 AAAGATAAAT
1 AAAGATAAAT
71217667 GAAA-ATAAAT
1 -AAAGATAAAT
71217677 CCTAAAATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
9 2 0.06
10 26 0.79
11 5 0.15
ACGTcount: A:0.66, C:0.02, G:0.10, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:71219527 original size:18 final size:18
Alignment explanation
Indices: 71219504--71219538 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
71219494 AAGAAGAGAA
71219504 ATTAATTATCACTCAAAG
1 ATTAATTATCACTCAAAG
71219522 ATTAATTATCACTCAAA
1 ATTAATTATCACTCAAA
71219539 CAAAATAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.17, G:0.03, T:0.34
Consensus pattern (18 bp):
ATTAATTATCACTCAAAG
Found at i:71219567 original size:5 final size:5
Alignment explanation
Indices: 71219557--71219657 Score: 93
Period size: 5 Copynumber: 19.4 Consensus size: 5
71219547 AGTAATAAAT
*
71219557 AATAA AATAA AATAA AATAA AGTAA TGAAT-A AAT-A AATAATA AATAA
1 AATAA AATAA AATAA AATAA AATAA --AATAA AATAA AAT-A-A AATAA
71219604 AATAA AATAA AATAA TAA-AA TAATAA AATAA AATAAA AATAA AGA-AA
1 AATAA AATAA AATAA -AATAA -AATAA AATAA AAT-AA AATAA A-ATAA
71219651 AATAA AA
1 AATAA AA
71219658 ATTGGGTTGC
Statistics
Matches: 84, Mismatches: 2, Indels: 20
0.79 0.02 0.19
Matches are distributed among these distances:
4 8 0.10
5 58 0.69
6 12 0.14
7 6 0.07
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:71219603 original size:42 final size:42
Alignment explanation
Indices: 71219550--71219657 Score: 134
Period size: 42 Copynumber: 2.5 Consensus size: 42
71219540 AAAATAAAGT
*
71219550 AATAAATAATAAAATAAAATAAAATAA-AGTAATGAAT-AAAT-A
1 AATAAA-AATAAAATAAAATAAAATAATA-AAAT-AATAAAATAA
71219592 AATAATAAATAAAATAAAATAAAATAATAAAATAATAAAATAA
1 AATAA-AAATAAAATAAAATAAAATAATAAAATAATAAAATAA
71219635 AATAAAAATAAAGA-AAAATAAAA
1 AATAAAAATAAA-ATAAAATAAAA
71219658 ATTGGGTTGC
Statistics
Matches: 60, Mismatches: 1, Indels: 10
0.85 0.01 0.14
Matches are distributed among these distances:
41 3 0.05
42 48 0.80
43 9 0.15
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (42 bp):
AATAAAAATAAAATAAAATAAAATAATAAAATAATAAAATAA
Found at i:71219610 original size:37 final size:34
Alignment explanation
Indices: 71219540--71219647 Score: 122
Period size: 37 Copynumber: 3.3 Consensus size: 34
71219530 TCACTCAAAC
71219540 AAAATAAAGTAAT-AAAT-AAT-A-AAATAAAAT
1 AAAATAAAGTAATAAAATAAATAATAAATAAAAT
71219570 AAAATAAAGTAATGAATAAATAAATAATAAATAAAAT
1 AAAATAAAGTAAT--A-AAATAAATAATAAATAAAAT
*
71219607 AAAATAAAATAATAAAAT-AAT-A-AAATAAAAT
1 AAAATAAAGTAATAAAATAAATAATAAATAAAAT
71219638 AAAAATAAAG
1 -AAAATAAAG
71219648 AAAAATAAAA
Statistics
Matches: 68, Mismatches: 2, Indels: 14
0.81 0.02 0.17
Matches are distributed among these distances:
30 13 0.19
31 9 0.13
32 9 0.13
33 3 0.04
34 8 0.12
35 4 0.06
36 1 0.01
37 21 0.31
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.22
Consensus pattern (34 bp):
AAAATAAAGTAATAAAATAAATAATAAATAAAAT
Found at i:71219631 original size:8 final size:8
Alignment explanation
Indices: 71219542--71219634 Score: 76
Period size: 8 Copynumber: 12.2 Consensus size: 8
71219532 ACTCAAACAA
*
71219542 AATAAAGT
1 AATAAAAT
71219550 AAT-AAAT
1 AATAAAAT
71219557 AATAAAAT
1 AATAAAAT
71219565 AA-AATAA-
1 AATAA-AAT
*
71219572 AATAAAGT
1 AATAAAAT
*
71219580 AAT-GAAT
1 AATAAAAT
71219587 AA-ATAAAT
1 AATA-AAAT
71219595 AAT-AAAT
1 AATAAAAT
71219602 AA-AATAA-
1 AATAA-AAT
71219609 AATAAAAT
1 AATAAAAT
71219617 AATAAAAT
1 AATAAAAT
71219625 AATAAAAT
1 AATAAAAT
71219633 AA
1 AA
71219635 AATAAAAATA
Statistics
Matches: 69, Mismatches: 5, Indels: 22
0.72 0.05 0.23
Matches are distributed among these distances:
7 26 0.38
8 43 0.62
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:71219653 original size:37 final size:35
Alignment explanation
Indices: 71219549--71219659 Score: 126
Period size: 34 Copynumber: 3.2 Consensus size: 35
71219539 CAAAATAAAG
*
71219549 TAATAAATAATAAAATAAAATAAAATAAAG--TAA
1 TAATAAATAATAAAATAAAATAAAATAAAGAAAAA
*
71219582 TGAATAAATAA-ATAAT-AAATAAAATAAA-ATAAAA
1 T-AATAAATAATAAAATAAAATAAAATAAAGA-AAAA
71219616 TAATAAAATAATAAAATAAAATAAAAATAAAGAAAAA
1 TAAT-AAATAATAAAATAAAAT-AAAATAAAGAAAAA
71219653 TAA-AAAT
1 TAATAAAT
71219660 TGGGTTGCCT
Statistics
Matches: 66, Mismatches: 3, Indels: 16
0.78 0.04 0.19
Matches are distributed among these distances:
32 12 0.18
33 8 0.12
34 18 0.27
35 8 0.12
36 4 0.06
37 15 0.23
38 1 0.02
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.23
Consensus pattern (35 bp):
TAATAAATAATAAAATAAAATAAAATAAAGAAAAA
Found at i:71238234 original size:55 final size:54
Alignment explanation
Indices: 71238139--71238288 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
71238129 CTACTTTGTT
* ** * *
71238139 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
71238193 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
71238248 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
71238289 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:71238251 original size:27 final size:27
Alignment explanation
Indices: 71238111--71238288 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
71238101 TAAATTGTAC
71238111 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
71238138 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
71238164 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
71238192 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
71238220 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
71238247 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
71238274 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
71238289 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:71238252 original size:82 final size:81
Alignment explanation
Indices: 71238112--71238267 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
71238102 AAATTGTACA
* * * *
71238112 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
71238177 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
71238193 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
71238256 TGTGCGAGTTGA
63 TGTGCGAATTGA
71238268 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:71242592 original size:40 final size:40
Alignment explanation
Indices: 71242533--71242730 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 40
71242523 CCTTTGGGAT
*
71242533 TTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGAGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGAC
71242572 TTAGCCCGGATATAGTAACTCGCAC-AA--------A-AC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGAC
* *
71242602 TTAGCCCGGATATAGTAACTCGTACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGAC
*
71242642 TTAGCCCGGATATAGTAACTCGCACAAATACCTTCGAGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGAC
* * *
71242682 TTAGCCTGGATATAGTCACTAGCACAAATGCCTTCG-GATC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGA-C
*
71242722 TTAGTCCGG
1 TTAGCCCGG
71242731 TTATCATCCG
Statistics
Matches: 135, Mismatches: 12, Indels: 23
0.79 0.07 0.14
Matches are distributed among these distances:
30 26 0.19
31 3 0.02
39 8 0.06
40 98 0.73
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGAC
Found at i:71242604 original size:30 final size:30
Alignment explanation
Indices: 71242570--71242629 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
71242560 TGCCTTCGAG
71242570 ACTTAGCCCGGATATAGTAACTCGCACAAA
1 ACTTAGCCCGGATATAGTAACTCGCACAAA
*
71242600 ACTTAGCCCGGATATAGTAACTCGTACAAA
1 ACTTAGCCCGGATATAGTAACTCGCACAAA
71242630 TGCCTTCGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.22
Consensus pattern (30 bp):
ACTTAGCCCGGATATAGTAACTCGCACAAA
Found at i:71242650 original size:70 final size:69
Alignment explanation
Indices: 71242533--71242669 Score: 238
Period size: 70 Copynumber: 2.0 Consensus size: 69
71242523 CCTTTGGGAT
71242533 TTAGCCGGATATAGCAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATATAGTAACTCGCACA
1 TTAGCCGGATATAGCAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATATAGTAACTCGCACA
71242598 AAAC
66 AAAC
* * *
71242602 TTAGCCCGGATATAGTAACTCGTACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC
1 TTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATATAGTAACTCGCAC
71242667 AAA
65 AAA
71242670 TACCTTCGAG
Statistics
Matches: 64, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
69 4 0.06
70 60 0.94
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (69 bp):
TTAGCCGGATATAGCAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATATAGTAACTCGCACA
AAAC
Found at i:71245103 original size:9 final size:9
Alignment explanation
Indices: 71245037--71245102 Score: 96
Period size: 9 Copynumber: 7.3 Consensus size: 9
71245027 TATACAAATC
71245037 ATTCGGTTA
1 ATTCGGTTA
71245046 ATTCGGTTA
1 ATTCGGTTA
* *
71245055 ATTTGGGTA
1 ATTCGGTTA
71245064 ATTCGGTTA
1 ATTCGGTTA
*
71245073 ATTCGATTA
1 ATTCGGTTA
71245082 ATTCGGTTA
1 ATTCGGTTA
*
71245091 ATTTGGTTA
1 ATTCGGTTA
71245100 ATT
1 ATT
71245103 TTATACTTAT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.24, C:0.08, G:0.21, T:0.47
Consensus pattern (9 bp):
ATTCGGTTA
Found at i:71245293 original size:12 final size:12
Alignment explanation
Indices: 71245276--71245300 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
71245266 TTATTTCGGG
71245276 TCGGTTAACCGA
1 TCGGTTAACCGA
71245288 TCGGTTAACCGA
1 TCGGTTAACCGA
71245300 T
1 T
71245301 TGAACACCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (12 bp):
TCGGTTAACCGA
Found at i:71247938 original size:10 final size:10
Alignment explanation
Indices: 71247919--71247968 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
71247909 TTAAATTCTA
71247919 AAAGATAAAT
1 AAAGATAAAT
71247929 ACAA-ATAAAT
1 A-AAGATAAAT
*
71247939 AAAGATAATT
1 AAAGATAAAT
71247949 AAAGATAAAT
1 AAAGATAAAT
71247959 GAAA-ATAAAT
1 -AAAGATAAAT
71247969 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:71249466 original size:37 final size:37
Alignment explanation
Indices: 71249390--71249466 Score: 86
Period size: 37 Copynumber: 2.1 Consensus size: 37
71249380 GATAATCACT
* *
71249390 TTAATATTAAATTAATAATATACTATCAAGATAAGTA
1 TTAATATTAAATTAATAATAAACTATCAAAATAAGTA
* *
71249427 TTAA-ATTAAAGTTAATATTAAATCTATTAAAATAA-TA
1 TTAATATTAAA-TTAATAATAAA-CTATCAAAATAAGTA
71249464 TTA
1 TTA
71249467 TTTTTGAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
36 6 0.18
37 18 0.53
38 10 0.29
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.40
Consensus pattern (37 bp):
TTAATATTAAATTAATAATAAACTATCAAAATAAGTA
Found at i:71251201 original size:64 final size:64
Alignment explanation
Indices: 71251096--71251226 Score: 201
Period size: 64 Copynumber: 2.0 Consensus size: 64
71251086 TAAACTTGTC
* * *
71251096 TTAACAATAAAATTTAGGAGAAATATAGAAATATTAGTATAAAATAAA-GTTTAATAATTTAAT
1 TTAACAATAAAATTTAGGAGAAATATAAAAATATTAATATAAAACAAATGTTTAATAATTTAAT
* *
71251159 TTAACAATAAAATTTAGGGAGAAATATAAAAATATTAATATAAAACAAATTTTTAATCATTTAAT
1 TTAACAATAAAATTTA-GGAGAAATATAAAAATATTAATATAAAACAAATGTTTAATAATTTAAT
71251224 TTA
1 TTA
71251227 GAATAGGAAC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
63 16 0.26
64 29 0.48
65 16 0.26
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.36
Consensus pattern (64 bp):
TTAACAATAAAATTTAGGAGAAATATAAAAATATTAATATAAAACAAATGTTTAATAATTTAAT
Found at i:71251370 original size:46 final size:46
Alignment explanation
Indices: 71251310--71251416 Score: 160
Period size: 46 Copynumber: 2.3 Consensus size: 46
71251300 ACTTTATTTC
* * *
71251310 AAAATTTCAAAATTTTCTTAATATATAAATCATTTACCCTGATAGT
1 AAAATTTTAAAATTTTCTTAATATATAAATAATTTACCCTAATAGT
* *
71251356 AAAATTTTATAATTTTCTTAATATATAAATAATTTATCCTAATAGT
1 AAAATTTTAAAATTTTCTTAATATATAAATAATTTACCCTAATAGT
*
71251402 AAACTTTTAAAATTT
1 AAAATTTTAAAATTT
71251417 ATACAAATGA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 54 1.00
ACGTcount: A:0.43, C:0.09, G:0.03, T:0.45
Consensus pattern (46 bp):
AAAATTTTAAAATTTTCTTAATATATAAATAATTTACCCTAATAGT
Found at i:71254253 original size:26 final size:25
Alignment explanation
Indices: 71254197--71254254 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 25
71254187 CTATATTATC
* **
71254197 TATTATATTATTTATGTTTTATTAT
1 TATTATATTATTTATATTTTAAAAT
71254222 TCATTATATTATTTATAATTTTAAAAT
1 T-ATTATATTATTTAT-ATTTTAAAAT
71254249 TATTAT
1 TATTAT
71254255 TAAATTATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 1 0.04
26 19 0.68
27 8 0.29
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (25 bp):
TATTATATTATTTATATTTTAAAAT
Found at i:71258138 original size:14 final size:14
Alignment explanation
Indices: 71258119--71258148 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
71258109 AATATATTCT
71258119 TTTTCTAAATAAAG
1 TTTTCTAAATAAAG
*
71258133 TTTTCTAAATGAAG
1 TTTTCTAAATAAAG
71258147 TT
1 TT
71258149 GAACCAGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.47
Consensus pattern (14 bp):
TTTTCTAAATAAAG
Found at i:71263851 original size:17 final size:16
Alignment explanation
Indices: 71263829--71263862 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
71263819 AAGGGACCCT
71263829 AAATTTATCAATTATCG
1 AAATTTATCAATT-TCG
71263846 AAATTTATCAATTTCG
1 AAATTTATCAATTTCG
71263862 A
1 A
71263863 TAGCTCCGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.41, C:0.12, G:0.06, T:0.41
Consensus pattern (16 bp):
AAATTTATCAATTTCG
Found at i:71271639 original size:206 final size:206
Alignment explanation
Indices: 71271112--71271663 Score: 838
Period size: 205 Copynumber: 2.7 Consensus size: 206
71271102 GATCAAGCTA
* *
71271112 AAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACGAACCGAAGACATAGCTGAT
1 AAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGAT
* *
71271177 TTGGCTTTCATGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
66 TTGGCTTTCATGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
* * *
71271242 TCAAATCGAAGTCTGGCATCTCCACTTCAACGAGGAGCAGATAAATAGTAGATCTCACCTTCAGA
131 ACAAATCGAAGTCTGGCATCTCCACTTCAACGAGAAGCAGATAAATAGCAGATCTCACCTTCAGA
* * *
71271307 TGTTTATACTG
196 CGATTAGACTG
* **
71271318 AAG-TAGATCCAAGATGGTTTGATATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGAT
1 AAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGAT
71271382 TTGGCTTTCATGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
66 TTGGCTTTCATGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
* * * *
71271447 ACAAATCGAAGTCTGGCATTTCCACTTCAACG-GAAAGCAGATACATAGCAGATCTGACCTTTAG
131 ACAAATCGAAGTCTGGCATCTCCACTTCAACGAG-AAGCAGATAAATAGCAGATCTCACCTTCAG
71271511 ACGATTAGACTG
195 ACGATTAGACTG
* * *
71271523 AAGCAAGATCCAAGATGATTTGGCATCCTTGTTCTTACAAGGAAAAAATCGAAGACATAGCTGAT
1 AAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGAT
*** * * * *
71271588 TTGGCTTTCGCCTGTTTATGCTGAAGCAAATCTGAGATGATTTGTCATCTCTGTATTGTCAGAAA
66 TTGGCTTTCATGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
71271653 ACAAATCGAAG
131 ACAAATCGAAG
71271664 AAACAGATTT
Statistics
Matches: 314, Mismatches: 30, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
204 1 0.00
205 186 0.59
206 127 0.40
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (206 bp):
AAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGAT
TTGGCTTTCATGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
ACAAATCGAAGTCTGGCATCTCCACTTCAACGAGAAGCAGATAAATAGCAGATCTCACCTTCAGA
CGATTAGACTG
Found at i:71273233 original size:22 final size:22
Alignment explanation
Indices: 71273194--71273236 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
71273184 TTTTTTTGTG
*
71273194 TTTATAATTACGCTTTATTTTA
1 TTTATAATTACGCCTTATTTTA
71273216 TTTATAATTTA-GCCTTATTTT
1 TTTATAA-TTACGCCTTATTTT
71273237 TTTGTTTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.26, C:0.09, G:0.05, T:0.60
Consensus pattern (22 bp):
TTTATAATTACGCCTTATTTTA
Found at i:71274895 original size:21 final size:22
Alignment explanation
Indices: 71274853--71274896 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
71274843 TGGTGACGAC
* **
71274853 TCCCATTTTTCCTAAAGTCGAT
1 TCCCATTTTTCCAAAACCCGAT
71274875 TCCCATTTTT-CAAAACCCGAT
1 TCCCATTTTTCCAAAACCCGAT
71274896 T
1 T
71274897 TAAAAATAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.25, C:0.30, G:0.07, T:0.39
Consensus pattern (22 bp):
TCCCATTTTTCCAAAACCCGAT
Found at i:71278017 original size:13 final size:14
Alignment explanation
Indices: 71277986--71278022 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
71277976 AAATAAGTCT
71277986 AAAAATCTAATATA
1 AAAAATCTAATATA
71278000 AAAAAT-TAATATA
1 AAAAATCTAATATA
*
71278013 AAAAACCTAA
1 AAAAATCTAA
71278023 AGCGGAACCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (14 bp):
AAAAATCTAATATA
Found at i:71278130 original size:16 final size:16
Alignment explanation
Indices: 71278111--71278146 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
71278101 ATGATTAACA
71278111 TATTA-TATATATTTAT
1 TATTATTAT-TATTTAT
71278127 TATTATTATTATTTAT
1 TATTATTATTATTTAT
71278143 TATT
1 TATT
71278147 TAACACAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.84
17 3 0.16
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TATTATTATTATTTAT
Found at i:71279820 original size:34 final size:34
Alignment explanation
Indices: 71279777--71279845 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
71279767 TTATTTATCA
71279777 TAAGTGATACTTAAACTATTCTTCTGTTACTCAT
1 TAAGTGATACTTAAACTATTCTTCTGTTACTCAT
*
71279811 TAAGTGATACTTAAACTATTCTTCTGTTATTCAT
1 TAAGTGATACTTAAACTATTCTTCTGTTACTCAT
71279845 T
1 T
71279846 TTACACAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.46
Consensus pattern (34 bp):
TAAGTGATACTTAAACTATTCTTCTGTTACTCAT
Found at i:71281096 original size:7 final size:7
Alignment explanation
Indices: 71281037--71281116 Score: 79
Period size: 7 Copynumber: 11.4 Consensus size: 7
71281027 TTCCTTCCTA
*
71281037 AATTCTC
1 AATTTTC
*
71281044 AATCTTC
1 AATTTTC
*
71281051 AATCTTC
1 AATTTTC
**
71281058 AATCCTC
1 AATTTTC
*
71281065 AATTTCC
1 AATTTTC
71281072 AATTTTC
1 AATTTTC
*
71281079 TATTTTC
1 AATTTTC
71281086 AATTTTC
1 AATTTTC
*
71281093 AATTTTG
1 AATTTTC
*
71281100 AATTTTG
1 AATTTTC
71281107 AATTTTC
1 AATTTTC
71281114 AAT
1 AAT
71281117 CCTAAATCCT
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 62 1.00
ACGTcount: A:0.29, C:0.19, G:0.03, T:0.50
Consensus pattern (7 bp):
AATTTTC
Found at i:71282316 original size:455 final size:455
Alignment explanation
Indices: 71281465--71282828 Score: 2692
Period size: 455 Copynumber: 3.0 Consensus size: 455
71281455 TCCCTCACTT
*
71281465 ATTAGTGCTTTGGTCGAAAGATGGAGACCAGAGGCACACATATTCCATCTTCCTTGCGGTGAGTG
1 ATTAGTGCTTTGGTCAAAAGATGGAGACCAGAGGCACACATATTCCATCTTCCTTGCGGTGAGTG
71281530 TACAATTGCACTCGAGAACATTAGTTTGCAACTTGGTCTATTGGTCAATGGAGAAGTCGATACGG
66 TACAATTGCACTCGAGAACATTAGTTTGCAACTTGGTCTATTGGTCAATGGAGAAGTCGATACGG
71281595 GGCCAGTTATTAGTGTCGAGTGGAGTGCAACATGCGACCAATTACTAGGAAAGGTGTCGAACAAG
131 GGCCAGTTATTAGTGTCGAGTGGAGTGCAACATGCGACCAATTACTAGGAAAGGTGTCGAACAAG
71281660 TTTAGGGATAGCCGGATCGAGATGAGATGGTTGGAGGAGAACTTGCAAACTATTGAGGCTTCTAC
196 TTTAGGGATAGCCGGATCGAGATGAGATGGTTGGAGGAGAACTTGCAAACTATTGAGGCTTCTAC
71281725 GAGTGACATTGAAAAGGAACAATTCACGCGCGCATTCATCTTAAGGTTGATTAGGGGTCTGCTAA
261 GAGTGACATTGAAAAGGAACAATTCACGCGCGCATTCATCTTAAGGTTGATTAGGGGTCTGCTAA
71281790 TGCTAGATAAATCTCGCAATTTGGTGTATTTAAGGTGGCTACTACTAATAGCCGACTTAAAAGAA
326 TGCTAGATAAATCTCGCAATTTGGTGTATTTAAGGTGGCTACTACTAATAGCCGACTTAAAAGAA
71281855 TTGGGATGACTTAGTTGGGGATCTGTAGTGCTGGTGACATTGTACTGAGAAATGTGTTGAGTGAC
391 TTGGGATGACTTAGTTGGGGATCTGTAGTGCTGGTGACATTGTACTGAGAAATGTGTTGAGTGAC
71281920 ATTAGTGCTTTGGTCAAAAGATGGAGACCAGAGGCACACATATTCCATCTTCCTTGCGGTGAGTG
1 ATTAGTGCTTTGGTCAAAAGATGGAGACCAGAGGCACACATATTCCATCTTCCTTGCGGTGAGTG
*
71281985 TACAATTGCACTCGAGAACATTAGTTTGTAACTTGGTCTATTGGTCAATGGAGAAGTCGATACGG
66 TACAATTGCACTCGAGAACATTAGTTTGCAACTTGGTCTATTGGTCAATGGAGAAGTCGATACGG
71282050 GGCCAGTTATTAGTGTCGAGTGGAGTGCAACATGCGACCAATTACTAGGAAAGGTGTCGAACAAG
131 GGCCAGTTATTAGTGTCGAGTGGAGTGCAACATGCGACCAATTACTAGGAAAGGTGTCGAACAAG
71282115 TTTAGGGATAGCCGGATCGAGATGAGATGGTTGGAGGAGAACTTGCAAACTATTGAGGCTTCTAC
196 TTTAGGGATAGCCGGATCGAGATGAGATGGTTGGAGGAGAACTTGCAAACTATTGAGGCTTCTAC
71282180 GAGTGACATTGAAAAGGAACAATTCACGCGCGCATTCATCTTAAGGTTGATTAGGGGTCTGCTAA
261 GAGTGACATTGAAAAGGAACAATTCACGCGCGCATTCATCTTAAGGTTGATTAGGGGTCTGCTAA
71282245 TGCTAGATAAATCTCGCAATTTGGTGTATTTAAGGTGGCTACTACTAATAGCCGACTTAAAAGAA
326 TGCTAGATAAATCTCGCAATTTGGTGTATTTAAGGTGGCTACTACTAATAGCCGACTTAAAAGAA
71282310 TTGGGATGACTTAGTTGGGGATCTGTAGTGCTGGTGACATTGTACTGAGAAATGTGTTGAGTGAC
391 TTGGGATGACTTAGTTGGGGATCTGTAGTGCTGGTGACATTGTACTGAGAAATGTGTTGAGTGAC
71282375 ATTAGTGCTTTGGTCAAAAGATGGAGACCAGAGGCACACATATTCCATCTTCCTTGCGGTGAGTG
1 ATTAGTGCTTTGGTCAAAAGATGGAGACCAGAGGCACACATATTCCATCTTCCTTGCGGTGAGTG
71282440 TACAATTGCACTCGAGAACATTAGTTTGCAACTTGGTCTATTGGTCAATGGAGAAGTCGATACGG
66 TACAATTGCACTCGAGAACATTAGTTTGCAACTTGGTCTATTGGTCAATGGAGAAGTCGATACGG
71282505 GGCCAGTTATTAGTGTCGAGTGGAGTGCAACATGCGACCAATTACTAGGAAAGGTGTCGAACAAG
131 GGCCAGTTATTAGTGTCGAGTGGAGTGCAACATGCGACCAATTACTAGGAAAGGTGTCGAACAAG
71282570 TTTAGGGATAGCCGGATCGAGATGAGATGGTTGGAGGAGAACTTGCAAACTATTGAGGCTTCTAC
196 TTTAGGGATAGCCGGATCGAGATGAGATGGTTGGAGGAGAACTTGCAAACTATTGAGGCTTCTAC
71282635 GAGTGACATTGAAAAGGAACAATTCACGCGCGCATTCATCTTAAGGTTGATTAGGGGTCTGCTAA
261 GAGTGACATTGAAAAGGAACAATTCACGCGCGCATTCATCTTAAGGTTGATTAGGGGTCTGCTAA
* *
71282700 TGCTAGATAAATCTCACAATTTGGTGCATTTAAGGTGGCTACTACTAATAGCCGACTTAAAAGAA
326 TGCTAGATAAATCTCGCAATTTGGTGTATTTAAGGTGGCTACTACTAATAGCCGACTTAAAAGAA
71282765 TTGGGATGACTTAGTTGGGGATCTGTAGTGCTGGTGACATTGTACTGAGAAATGTGTTGAGTGA
391 TTGGGATGACTTAGTTGGGGATCTGTAGTGCTGGTGACATTGTACTGAGAAATGTGTTGAGTGA
71282829 TGATACCGGA
Statistics
Matches: 904, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
455 904 1.00
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.28
Consensus pattern (455 bp):
ATTAGTGCTTTGGTCAAAAGATGGAGACCAGAGGCACACATATTCCATCTTCCTTGCGGTGAGTG
TACAATTGCACTCGAGAACATTAGTTTGCAACTTGGTCTATTGGTCAATGGAGAAGTCGATACGG
GGCCAGTTATTAGTGTCGAGTGGAGTGCAACATGCGACCAATTACTAGGAAAGGTGTCGAACAAG
TTTAGGGATAGCCGGATCGAGATGAGATGGTTGGAGGAGAACTTGCAAACTATTGAGGCTTCTAC
GAGTGACATTGAAAAGGAACAATTCACGCGCGCATTCATCTTAAGGTTGATTAGGGGTCTGCTAA
TGCTAGATAAATCTCGCAATTTGGTGTATTTAAGGTGGCTACTACTAATAGCCGACTTAAAAGAA
TTGGGATGACTTAGTTGGGGATCTGTAGTGCTGGTGACATTGTACTGAGAAATGTGTTGAGTGAC
Found at i:71288937 original size:24 final size:24
Alignment explanation
Indices: 71288905--71288980 Score: 82
Period size: 24 Copynumber: 3.1 Consensus size: 24
71288895 TCATTAGGGA
71288905 TTACCGATTGCAGCTCGTGAGAGC
1 TTACCGATTGCAGCTCGTGAGAGC
* * *
71288929 TTACCGATTTTCAACTCGT-ATGAGT
1 TTACCGA-TTGCAGCTCGTGA-GAGC
* *
71288954 TTACCAATTGTAGCTCGTGAGAGC
1 TTACCGATTGCAGCTCGTGAGAGC
71288978 TTA
1 TTA
71288981 ACAATTCTCA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
24 22 0.54
25 19 0.46
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (24 bp):
TTACCGATTGCAGCTCGTGAGAGC
Found at i:71288999 original size:49 final size:49
Alignment explanation
Indices: 71288905--71289001 Score: 131
Period size: 49 Copynumber: 2.0 Consensus size: 49
71288895 TCATTAGGGA
* * * *
71288905 TTACCGATTGCAGCTCGTGAGAGCTTACCGATTTTCAACTCGTATGAGT
1 TTACCAATTGCAGCTCGTGAGAGCTTAACAATTCTCAACTCGTATGAGT
* * *
71288954 TTACCAATTGTAGCTCGTGAGAGCTTAACAATTCTCATCTTGTATGAG
1 TTACCAATTGCAGCTCGTGAGAGCTTAACAATTCTCAACTCGTATGAG
71289002 CTTATCGATT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (49 bp):
TTACCAATTGCAGCTCGTGAGAGCTTAACAATTCTCAACTCGTATGAGT
Found at i:71289056 original size:25 final size:25
Alignment explanation
Indices: 71288998--71289056 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 25
71288988 TCATCTTGTA
* * * *
71288998 TGAGCTTATCGATTTATAGCTCGTG
1 TGAGCATACCGATTCATAGCTCATG
* *
71289023 CGAGTATACCGATTCATAGCTCATG
1 TGAGCATACCGATTCATAGCTCATG
71289048 TGAGCATAC
1 TGAGCATAC
71289057 ATGTACAAGA
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.32
Consensus pattern (25 bp):
TGAGCATACCGATTCATAGCTCATG
Found at i:71293516 original size:46 final size:45
Alignment explanation
Indices: 71293441--71293613 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
71293431 TGTAACCCGC
* *
71293441 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCAT
* *
71293487 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCAT
* * * *
71293537 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCAT
71293580 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
71293614 AGATGCTCAA
Statistics
Matches: 108, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.55
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCAT
Found at i:71293607 original size:93 final size:93
Alignment explanation
Indices: 71293448--71293619 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
71293438 CGCCCATAAG
* * *
71293448 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
71293513 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCAGATGCCTAGTTACATCTCA
* *
71293541 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
71293606 ACGAGTTCAGATGC
66 ACGAGTTCAGATGC
71293620 TCAACTATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCAGATGCCTAGTTACATCTCA
Found at i:71296037 original size:15 final size:15
Alignment explanation
Indices: 71296008--71296057 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
71295998 CAAAGATAAC
*
71296008 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
71296022 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
71296037 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
71296052 AAGAAA
1 AAGAAA
71296058 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:71296066 original size:15 final size:15
Alignment explanation
Indices: 71296019--71296066 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
71296009 AGAAAACCGA
71296019 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
71296033 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
71296049 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
71296064 ATA
1 ATA
71296067 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:71298795 original size:93 final size:93
Alignment explanation
Indices: 71298636--71298807 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
71298626 CGCCCATAAG
* * *
71298636 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
71298701 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
71298729 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
71298794 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
71298808 TCAACCATCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:71298804 original size:46 final size:46
Alignment explanation
Indices: 71298629--71298804 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
71298619 TGTAACCCGC
* * * *
71298629 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * *
71298675 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
71298725 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
71298768 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
71298805 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 62 0.57
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:71313004 original size:11 final size:11
Alignment explanation
Indices: 71312988--71313015 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
71312978 GCTAGTGTAA
71312988 GACATGTCTGG
1 GACATGTCTGG
71312999 GACATGTCTGG
1 GACATGTCTGG
71313010 GACATG
1 GACATG
71313016 CATCGGCCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.21, C:0.18, G:0.36, T:0.25
Consensus pattern (11 bp):
GACATGTCTGG
Found at i:71313066 original size:46 final size:46
Alignment explanation
Indices: 71312999--71313161 Score: 226
Period size: 46 Copynumber: 3.5 Consensus size: 46
71312989 ACATGTCTGG
71312999 GACATGTCTGGGACATGCATCGGCCACATTATGAAAGCCAGTGTAA
1 GACATGTCTGGGACATGCATCGGCCACATTATGAAAGCCAGTGTAA
71313045 GACATGTCTGGGACATGCATCGGCCACATTATGAAAGCCAGTGTAA
1 GACATGTCTGGGACATGCATCGGCCACATTATGAAAGCCAGTGTAA
* * **
71313091 GACATGTTTGGGACATACATCGG---CATTGA-GACGAGAGTTAGTGTAA
1 GACATGTCTGGGACATGCATCGGCCACATT-ATGA--A-AGCCAGTGTAA
71313137 GACATGTCTGGGACATGCATCGGCC
1 GACATGTCTGGGACATGCATCGGCC
71313162 TCGAGATATA
Statistics
Matches: 105, Mismatches: 6, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 1 0.01
46 97 0.92
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
GACATGTCTGGGACATGCATCGGCCACATTATGAAAGCCAGTGTAA
Found at i:71313226 original size:92 final size:91
Alignment explanation
Indices: 71313037--71313250 Score: 227
Period size: 92 Copynumber: 2.3 Consensus size: 91
71313027 TTATGAAAGC
* * *
71313037 CAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAAAGCCAGTGTAAGACATGTTTGG
1 CAGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAAAGCCAGTATAAGACATATTTGG
*
71313102 GACATACATCGGCATTGAGACGAGAGT
66 GACATACATCAGCATT-AGACGAGAGT
* * * *
71313129 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAT-ACAAGCTAGTATAAGACCTATT
1 CAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-ATATGA-AAGCCAGTATAAGACATATT
* ** * *
71313193 TGGGACATGGCATCAGC-TT-GTTGTGTGT
63 TGGGACAT-ACATCAGCATTAGACGAGAGT
*
71313221 CAGTGTAAGACCTGTCTGGGACATGGCATC
1 CAGTGTAAGACATGTCTGGGACAT-GCATC
71313251 AACACCGGTA
Statistics
Matches: 102, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
92 60 0.59
93 7 0.07
94 29 0.28
95 6 0.06
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (91 bp):
CAGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAAAGCCAGTATAAGACATATTTGG
GACATACATCAGCATTAGACGAGAGT
Found at i:71313285 original size:49 final size:49
Alignment explanation
Indices: 71313029--71313341 Score: 177
Period size: 46 Copynumber: 6.6 Consensus size: 49
71313019 CGGCCACATT
* ** * *
71313029 ATGAAAGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCCAC-AT-T
1 ATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAACCTCGATAG
* * * ** * *
71313075 ATGAAAGCCAGTGTAAGACATGTTTGGGACAT-ACATCGGCATTG--AG
1 ATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAACCTCGATAG
* * ** * ** * *
71313121 ACGAGAGTTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGAT
1 ATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAACCTCGATAG
* * * * * * *
71313169 AT-ACAAGCTAGTATAAGACCTATTTGGGACATGGCATC-AGCTTG-TTG
1 ATGA-AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAACCTCGATAG
* * *
71313216 -TG--TGTCAGTGTAAGACCTGTCTGGGACATGGCATCAACAC-CGGTAG
1 ATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAAC-CTCGATAG
* * * *
71313262 ATGAGAGCCAGTGTAAAACCTGTCTGGGACATGGCATCAGCCTCGATAT
1 ATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAACCTCGATAG
* *
71313311 ATGAAAGTCAGTGTAAGACCTGTCTAGGACA
1 ATGAAAGCCAGTGTAAGACCTGTCTGGGACA
71313342 CAACATCGAC
Statistics
Matches: 206, Mismatches: 47, Indels: 25
0.74 0.17 0.09
Matches are distributed among these distances:
44 27 0.13
45 2 0.01
46 78 0.38
47 3 0.01
48 28 0.14
49 68 0.33
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.24
Consensus pattern (49 bp):
ATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAACCTCGATAG
Found at i:71315370 original size:27 final size:28
Alignment explanation
Indices: 71315289--71315383 Score: 129
Period size: 27 Copynumber: 3.4 Consensus size: 28
71315279 GAGATTGGTG
* * * *
71315289 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
71315318 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
71315346 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
71315373 CTGAGTGTGCG
1 CTAAGTGTGCG
71315384 GACTTAATAT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.39
28 22 0.36
29 15 0.25
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:71315394 original size:27 final size:27
Alignment explanation
Indices: 71315314--71315396 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
71315304 TAAATTGTAC
* *
71315314 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
71315342 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
71315369 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
71315396 A
1 A
71315397 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:71317465 original size:42 final size:42
Alignment explanation
Indices: 71317400--71317493 Score: 152
Period size: 42 Copynumber: 2.2 Consensus size: 42
71317390 CGTGTGTCTA
71317400 GGCCGTGTGTGACGCACGATCAGCCCCATAGGCATGATGTTC
1 GGCCGTGTGTGACGCACGATCAGCCCCATAGGCATGATGTTC
* * * *
71317442 GGCCATGTGTGACGCACGGTCAGCCCCATGGGCGTGATGTTC
1 GGCCGTGTGTGACGCACGATCAGCCCCATAGGCATGATGTTC
71317484 GGCCGTGTGT
1 GGCCGTGTGT
71317494 ACCCTGTACG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.15, C:0.28, G:0.35, T:0.22
Consensus pattern (42 bp):
GGCCGTGTGTGACGCACGATCAGCCCCATAGGCATGATGTTC
Found at i:71324647 original size:34 final size:34
Alignment explanation
Indices: 71324608--71324675 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
71324598 TTATAGGATG
71324608 ACATGCTAACTATGTTTTGTTTTTAGTGTATAGC
1 ACATGCTAACTATGTTTTGTTTTTAGTGTATAGC
*
71324642 ACATGCTAACTATGTTTTGTTTTTAGTGTTTAGC
1 ACATGCTAACTATGTTTTGTTTTTAGTGTATAGC
71324676 TGCAAAAACA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.22, C:0.12, G:0.18, T:0.49
Consensus pattern (34 bp):
ACATGCTAACTATGTTTTGTTTTTAGTGTATAGC
Found at i:71327838 original size:3 final size:3
Alignment explanation
Indices: 71327830--71327858 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
71327820 ATCGATAAGG
71327830 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
71327859 TACACAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:71330288 original size:48 final size:47
Alignment explanation
Indices: 71330208--71330346 Score: 170
Period size: 48 Copynumber: 2.9 Consensus size: 47
71330198 TTTGGGTGAT
* * * * * *
71330208 ATGAGTGCCAGTGTAAGACCATGTCTGGGACATAGCATTGGCACTGAT
1 ATGAGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCAC-AAC
* *
71330256 GTGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACAAC
1 ATGAGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGG-CACAAC
* *
71330304 ATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCA
1 ATGAGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCA
71330347 ATTCACCCTC
Statistics
Matches: 78, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
47 2 0.03
48 73 0.94
49 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
ATGAGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCACAAC
Found at i:71343576 original size:48 final size:48
Alignment explanation
Indices: 71343500--71343730 Score: 250
Period size: 48 Copynumber: 4.8 Consensus size: 48
71343490 GGTGATATGA
*
71343500 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATGTGT
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATGTGT
* * *
71343548 GTGCTAGTGTGAGACCATGTCTAGGACATGGCATCAGCATTGATGTGT
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATGTGT
* * * * * * *
71343596 GTGCTAGTCTAAAACCATGTTTGGGACATGGCATCGGCAAT-AAGACGA
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATG-TGT
* ** *
71343644 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTCGACATAT
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT-GATGTGT
* * * * *
71343692 GAGCCAGTGTAAGACCATGTTTAGAACATGGCATCGGCA
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
71343731 ATTCACCCTC
Statistics
Matches: 151, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
47 3 0.02
48 147 0.97
49 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (48 bp):
GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATGTGT
Found at i:71347347 original size:29 final size:29
Alignment explanation
Indices: 71347303--71347370 Score: 109
Period size: 29 Copynumber: 2.3 Consensus size: 29
71347293 AACACTTAGG
*
71347303 CTATTTTCCAAGCCTTATGTTGTCCTTAA
1 CTATTTTCCAAACCTTATGTTGTCCTTAA
71347332 CTATTTTCCAAACCTTATGTTGTCCTTAA
1 CTATTTTCCAAACCTTATGTTGTCCTTAA
* *
71347361 TTCTTTTCCA
1 CTATTTTCCA
71347371 TACGTATACA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.21, C:0.25, G:0.07, T:0.47
Consensus pattern (29 bp):
CTATTTTCCAAACCTTATGTTGTCCTTAA
Found at i:71349091 original size:50 final size:50
Alignment explanation
Indices: 71349027--71349413 Score: 375
Period size: 50 Copynumber: 7.7 Consensus size: 50
71349017 CTGGTACGCA
* *
71349027 TAGTAGCCTTCACTTAGTACTACACATGCGACCTATCAATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACATG
* * * **
71349077 TAGTATCCTGCACTTAGTACTACACATGTGACTTATCTATCTAATACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACATG
* * * * * * *
71349127 TAGTAGCCTGCACTTAGTAGTACACATGTGATCGAGGTTAA-CGGGTACGTA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTA--TCAATCTGGTACATG
* * *
71349178 TAGTAGACTGCACTTAGTACTACACATGCGACCTATCAAT-TCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCT-GGTACATG
* * * * *
71349228 TAGTAGCCTGCAATTAGTACTACACATGTGACCTAACTATTTGATACAT-
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACATG
* ** * * ** ** *
71349277 TCAGTAGCCTGCACTTAGTACTACACATGTGGTCGAAACTATAGGGTATGTA
1 T-AGTAGCCTGCACTTAGTACTACACATGT-GACCTATCAATCTGGTACATG
* * * * *
71349329 TAGTATCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACATG
71349379 TAGTAGCCTGCACTTAGTACTACACATGTGACCTA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTA
71349414 AAACTGTCTT
Statistics
Matches: 268, Mismatches: 61, Indels: 16
0.78 0.18 0.05
Matches are distributed among these distances:
49 4 0.01
50 188 0.70
51 73 0.27
52 3 0.01
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACATG
Found at i:71349202 original size:151 final size:151
Alignment explanation
Indices: 71349019--71349460 Score: 579
Period size: 151 Copynumber: 2.9 Consensus size: 151
71349009 GAAGCTCTCT
* * * *
71349019 GGTACGCATAGTAGCCTTCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTATC
1 GGTACGTATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * *
71349084 CTGCACTTAGTACTACACATGTGACTTATCTATCTAATACATGT-AGTAGCCTGCACTTAGTAGT
66 CTGCACTTAGTACTACACATGTGACCTAACTATCTAATACAT-TCAGTAGCCTGCACTTAGTACT
***
71349148 ACACATGTGATCGAGGTTA-ACG
130 ACACATGTGATCGAAACTATA-G
* *
71349170 GGTACGTATAGTAGACTGCACTTAGTACTACACATGCGACCTATCAAT-TCGGTACACGTAGTAG
1 GGTACGTATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCT-GGTACACGTAGTAG
* * *
71349234 CCTGCAATTAGTACTACACATGTGACCTAACTATTTGATACATTCAGTAGCCTGCACTTAGTACT
65 CCTGCACTTAGTACTACACATGTGACCTAACTATCTAATACATTCAGTAGCCTGCACTTAGTACT
*
71349299 ACACATGTGGTCGAAACTATAG
130 ACACATGTGATCGAAACTATAG
* * *
71349321 GGTATGTATAGTATCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGC
1 GGTACGTATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * *
71349386 CTGCACTTAGTACTACACATGTGACCTAAAACTGTCTTAA-ACACAT-AGTAGCCTACACATAGT
66 CTGCACTTAGTACTACACATGTGACCT--AACTATC-TAATACA-TTCAGTAGCCTGCACTTAGT
71349449 ACTACACATGTG
127 ACTACACATGTG
71349461 TTCTTACAAT
Statistics
Matches: 256, Mismatches: 27, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
150 2 0.01
151 214 0.84
152 2 0.01
153 35 0.14
154 3 0.01
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.29
Consensus pattern (151 bp):
GGTACGTATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACATGTGACCTAACTATCTAATACATTCAGTAGCCTGCACTTAGTACTA
CACATGTGATCGAAACTATAG
Found at i:71349414 original size:50 final size:50
Alignment explanation
Indices: 71349016--71349460 Score: 351
Period size: 50 Copynumber: 8.8 Consensus size: 50
71349006 ACCGAAGCTC
* * * *
71349016 TCTGGTACGCATAGTAGCCTTCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
** * * * *
71349066 TCTGGTACATGTAGTATCCTGCACTTAGTACTACACATGTGACTTATCTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
** ** * * * **
71349116 TCTAATACATGTAGTAGCCTGCACTTAGTAGTACACATGTGATCGAGGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTA--ACAA
* ** * * *
71349168 -CGGGTACGTATAGTAGACTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * *
71349217 T-TCGGTACACGTAGTAGCCTGCAATTAGTACTACACATGTGACCTAACTA
1 TCT-GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * ** *
71349267 TTTGATACA-TTCAGTAGCCTGCACTTAGTACTACACATGTGGTCGAAACTA
1 TCTGGTACACAT-AGTAGCCTGCACTTAGTACTACACATGT-GACCTAACAA
** *** * * *
71349318 TAGGGTATGTATAGTATCCTACACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
*
71349368 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-AA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * *
71349417 -CTGTCTTAAACACATAGTAGCCTACACATAGTACTACACATGTG
1 TCTG--GT--ACACATAGTAGCCTGCACTTAGTACTACACATGTG
71349461 TTCTTACAAT
Statistics
Matches: 314, Mismatches: 69, Indels: 22
0.78 0.17 0.05
Matches are distributed among these distances:
48 3 0.01
49 6 0.02
50 198 0.63
51 72 0.23
52 35 0.11
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
Found at i:71351347 original size:10 final size:10
Alignment explanation
Indices: 71351320--71351378 Score: 75
Period size: 10 Copynumber: 5.9 Consensus size: 10
71351310 TTAAATTGTA
71351320 AAAGATAAAT
1 AAAGATAAAT
71351330 ACAA-ATAAAT
1 A-AAGATAAAT
*
71351340 AAAGATAATT
1 AAAGATAAAT
*
71351350 AAAGATAATT
1 AAAGATAAAT
71351360 AAAGATAAAT
1 AAAGATAAAT
*
71351370 GAAGATAAA
1 AAAGATAAA
71351379 AGCTAAAATT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
9 2 0.05
10 40 0.91
11 2 0.05
ACGTcount: A:0.66, C:0.02, G:0.10, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:71352161 original size:99 final size:101
Alignment explanation
Indices: 71351984--71352175 Score: 264
Period size: 99 Copynumber: 1.9 Consensus size: 101
71351974 TTCTCTTTTA
* * *
71351984 TTATTATTATTATTGCTTAAGAATACATTGAACCGTTTGACGCGAAGAGAGATGACAACCAAGCA
1 TTATTATTATTATTGCTTAAGAACACATCGAACCGTTTGACGCAAAGAGAGATGACAACCAAGCA
* *
71352049 CCCTACCCTGGTTACTCAGTCC-AACATACTCCTAAT
66 CCCCACCCCGGTTACTCAG-CCTAACATACTCCTAAT
* * * * *
71352085 TTATTA-TATT-TTTCTTAAGAACATATCGAACCTTTTGATGCAAAGAGAGATGACAGCCAAGCA
1 TTATTATTATTATTGCTTAAGAACACATCGAACCGTTTGACGCAAAGAGAGATGACAACCAAGCA
71352148 CCCCACCCCGGTTACTCAGCCTAACATA
66 CCCCACCCCGGTTACTCAGCCTAACATA
71352176 TTACTAAAAA
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
98 2 0.03
99 68 0.85
100 4 0.05
101 6 0.08
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (101 bp):
TTATTATTATTATTGCTTAAGAACACATCGAACCGTTTGACGCAAAGAGAGATGACAACCAAGCA
CCCCACCCCGGTTACTCAGCCTAACATACTCCTAAT
Found at i:71352907 original size:9 final size:9
Alignment explanation
Indices: 71352876--71352900 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
71352866 TAACGCCCTA
71352876 ATTTTTGGG
1 ATTTTTGGG
71352885 ATTTTTGGG
1 ATTTTTGGG
71352894 ATTTTTG
1 ATTTTTG
71352901 TGGTTTTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (9 bp):
ATTTTTGGG
Found at i:71354747 original size:40 final size:40
Alignment explanation
Indices: 71354664--71354883 Score: 259
Period size: 40 Copynumber: 5.5 Consensus size: 40
71354654 ACCCAAGTAT
** * *
71354664 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
71354702 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
71354742 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
71354782 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
71354822 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
71354862 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
71354884 CATTCGAATA
Statistics
Matches: 154, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 16 0.10
40 125 0.81
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:71362866 original size:40 final size:40
Alignment explanation
Indices: 71362812--71362901 Score: 153
Period size: 40 Copynumber: 2.2 Consensus size: 40
71362802 CTCGCACAAG
* *
71362812 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTTGGGACTTAGCCCGGATATGGTCACTAGCATAAAT
71362852 GCCTTTGGGACTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTTGGGACTTAGCCCGGATATGGTCACTAGCATAAAT
71362892 GCCTTCTGGG
1 GCCTT-TGGG
71362902 CTAGCCATAG
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
40 43 0.91
41 4 0.09
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (40 bp):
GCCTTTGGGACTTAGCCCGGATATGGTCACTAGCATAAAT
Found at i:71378495 original size:40 final size:40
Alignment explanation
Indices: 71378421--71378631 Score: 248
Period size: 40 Copynumber: 5.3 Consensus size: 40
71378411 TCTTTGGGAT
** * *
71378421 TTAGCCC-GATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
71378459 TTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* *
71378499 TTAGCCCGGATATAATCGCTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* *
71378539 TTAGCCCGGATATAG-CAACTCGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTC
* * * **
71378579 TTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGAAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
71378619 TTAGCCCGGATAT
1 TTAGCCCGGATAT
71378632 CATACGAATA
Statistics
Matches: 147, Mismatches: 22, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
38 7 0.05
39 13 0.09
40 126 0.86
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
Found at i:71381851 original size:27 final size:26
Alignment explanation
Indices: 71381774--71381886 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 26
71381764 AGGAAGTGTC
* *
71381774 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
*
71381802 CTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
* *
71381829 CTGGTGGCTCTGCTATGATTATCTGTAT
1 CTGGTGGCTCTGCCA-CATTATCTGT-T
* * *
71381857 CTGGTGACTCTGTCACATTATCTATT
1 CTGGTGGCTCTGCCACATTATCTGTT
71381883 CTGG
1 CTGG
71381887 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
26 7 0.10
27 35 0.49
28 29 0.41
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:71387448 original size:40 final size:40
Alignment explanation
Indices: 71387354--71387491 Score: 100
Period size: 40 Copynumber: 3.4 Consensus size: 40
71387344 TAACAATCTC
* * ** *
71387354 GCACACTTAGTGCCATTTCAATAAACCGAAGCTATCTCGGTATT
1 GCACACTTAGTGCCATTT--AT-AACCAAAGCTATTTC-AAACT
* * *
71387398 GCACATTTAGTGCC-TTATATAACTAAAGCTA-TTCGAACT
1 GCACACTTAGTGCCATT-TATAACCAAAGCTATTTCAAACT
* * *
71387437 CGCACACTTAGTTCCATTTGTAGCCAAAGCTATTTCAAACT
1 -GCACACTTAGTGCCATTTATAACCAAAGCTATTTCAAACT
*
71387478 GTACACTTAGTGCC
1 GCACACTTAGTGCC
71387492 GAACATAGTC
Statistics
Matches: 76, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
39 3 0.04
40 37 0.49
41 18 0.24
42 2 0.03
43 2 0.03
44 14 0.18
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (40 bp):
GCACACTTAGTGCCATTTATAACCAAAGCTATTTCAAACT
Found at i:71396019 original size:8 final size:9
Alignment explanation
Indices: 71395999--71396026 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
71395989 ATTTGGTGTA
71395999 TTTTGTGAT
1 TTTTGTGAT
71396008 TTTTGTGAT
1 TTTTGTGAT
71396017 TTTTGTGAT
1 TTTTGTGAT
71396026 T
1 T
71396027 AGGGACTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.11, C:0.00, G:0.21, T:0.68
Consensus pattern (9 bp):
TTTTGTGAT
Found at i:71408118 original size:35 final size:35
Alignment explanation
Indices: 71408072--71408143 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
71408062 AACTACATGT
71408072 TAGTCTTAATGCATTATTGTTGTCCTAGCCAACAA
1 TAGTCTTAATGCATTATTGTTGTCCTAGCCAACAA
71408107 TAGTCTTAATGCATTATTGTTGTCCTAGCCAACAA
1 TAGTCTTAATGCATTATTGTTGTCCTAGCCAACAA
71408142 TA
1 TA
71408144 ATACTTGACT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (35 bp):
TAGTCTTAATGCATTATTGTTGTCCTAGCCAACAA
Found at i:71410094 original size:55 final size:55
Alignment explanation
Indices: 71410034--71410167 Score: 223
Period size: 55 Copynumber: 2.4 Consensus size: 55
71410024 ACCATGGCAT
* * *
71410034 CGATATATGTGTGTGAGTAAGACTATGTTTTATACGTTGGCATTGATATGTACTC
1 CGATATATGTGTGTGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTACTC
71410089 CGATATATGTGTGTGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTACTC
1 CGATATATGTGTGTGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTACTC
* *
71410144 TGATATATGTGTGCGAGTAAGACC
1 CGATATATGTGTGTGAGTAAGACC
71410168 CTATCTGGGA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 74 1.00
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.36
Consensus pattern (55 bp):
CGATATATGTGTGTGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTACTC
Found at i:71414937 original size:26 final size:26
Alignment explanation
Indices: 71414906--71415013 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
71414896 TGAAATGCCC
*
71414906 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
71414932 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
71414958 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
71414984 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
71415010 ATCA
1 ATCA
71415014 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:71415440 original size:5 final size:5
Alignment explanation
Indices: 71415430--71415504 Score: 57
Period size: 5 Copynumber: 14.8 Consensus size: 5
71415420 ATATCCAAAC
* * *
71415430 AAAAT AAAAT AATAT ATAAT AAATAAT AAAAT AAAAT AAAAT AAAGT AATAA-
1 AAAAT AAAAT AAAAT AAAAT -AA-AAT AAAAT AAAAT AAAAT AAAAT AA-AAT
*
71415482 ATAAAT -AAAT AATA- AAAAT AAAA
1 A-AAAT AAAAT AAAAT AAAAT AAAA
71415505 ACAAAATTGG
Statistics
Matches: 55, Mismatches: 8, Indels: 14
0.71 0.10 0.18
Matches are distributed among these distances:
4 7 0.13
5 40 0.73
6 5 0.09
7 3 0.05
ACGTcount: A:0.75, C:0.00, G:0.01, T:0.24
Consensus pattern (5 bp):
AAAAT
Found at i:71415450 original size:7 final size:7
Alignment explanation
Indices: 71415436--71415503 Score: 68
Period size: 7 Copynumber: 9.4 Consensus size: 7
71415426 AAACAAAATA
71415436 AAATAAT
1 AAATAAT
*
71415443 ATATAAT
1 AAATAAT
71415450 AAATAAT
1 AAATAAT
71415457 AAAATAA-
1 -AAATAAT
*
71415464 AATAAAAT
1 AA-ATAAT
71415472 AAAGTAAT
1 AAA-TAAT
71415480 AAATAAAT
1 AAAT-AAT
71415488 AAATAAT
1 AAATAAT
71415495 AAA-AAT
1 AAATAAT
71415501 AAA
1 AAA
71415504 AACAAAATTG
Statistics
Matches: 52, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
6 8 0.15
7 23 0.44
8 21 0.40
ACGTcount: A:0.74, C:0.00, G:0.01, T:0.25
Consensus pattern (7 bp):
AAATAAT
Found at i:71415459 original size:22 final size:22
Alignment explanation
Indices: 71415432--71415504 Score: 87
Period size: 22 Copynumber: 3.3 Consensus size: 22
71415422 ATCCAAACAA
71415432 AATAAAATAATATATAATAAAT
1 AATAAAATAATATATAATAAAT
* *
71415454 AATAAAATAAAATAAAATAAAGT
1 AATAAAATAATATATAATAAA-T
*
71415477 AAT-AAATAAATAAATAATAAA-
1 AATAAAAT-AATATATAATAAAT
71415498 AATAAAA
1 AATAAAA
71415505 ACAAAATTGG
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
21 3 0.07
22 26 0.60
23 14 0.33
ACGTcount: A:0.74, C:0.00, G:0.01, T:0.25
Consensus pattern (22 bp):
AATAAAATAATATATAATAAAT
Found at i:71415484 original size:27 final size:27
Alignment explanation
Indices: 71415430--71415504 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 27
71415420 ATATCCAAAC
*
71415430 AAAATAAAATAATATATAATAAATAAT
1 AAAATAAAATAAAATATAATAAATAAT
71415457 AAAATAAAATAAAATAAAGTAATAAATAAAT
1 AAAATAAAATAAAAT--A-TAATAAAT-AAT
71415488 AAATAATAAAAATAAAA
1 -AA-AAT-AAAATAAAA
71415505 ACAAAATTGG
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
27 14 0.35
29 1 0.03
30 8 0.20
31 3 0.08
32 2 0.05
33 3 0.08
34 9 0.22
ACGTcount: A:0.75, C:0.00, G:0.01, T:0.24
Consensus pattern (27 bp):
AAAATAAAATAAAATATAATAAATAAT
Found at i:71415486 original size:4 final size:4
Alignment explanation
Indices: 71415431--71415503 Score: 51
Period size: 4 Copynumber: 16.8 Consensus size: 4
71415421 TATCCAAACA
71415431 AAAT AAAAT AATAT ATAAT AAAT -AAT AAAAT AAAAT AAAAT AAAGT -AAT
1 AAAT -AAAT AA-AT A-AAT AAAT AAAT -AAAT -AAAT -AAAT AAA-T AAAT
*
71415480 AAAT AAAT AAAT AATAA AAAT AAA
1 AAAT AAAT AAAT AA-AT AAAT AAA
71415504 AACAAAATTG
Statistics
Matches: 59, Mismatches: 2, Indels: 15
0.78 0.03 0.20
Matches are distributed among these distances:
3 4 0.07
4 27 0.46
5 27 0.46
6 1 0.02
ACGTcount: A:0.74, C:0.00, G:0.01, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:71419535 original size:41 final size:41
Alignment explanation
Indices: 71419448--71419614 Score: 164
Period size: 41 Copynumber: 4.1 Consensus size: 41
71419438 TAAAGCCTAG
* * * *
71419448 TATAATACACCGGCACAGAA-CCTGGTAGGCAATAGGC-CTAA
1 TATAATACACCGGCATA-AAGCCTGCTAGGCAATAAGCTC-GA
*
71419489 CATAATACACCGGCATAAAG-CTGCTAGGCAATAAAGCTCGA
1 TATAATACACCGGCATAAAGCCTGCTAGGCAAT-AAGCTCGA
* *
71419530 TATAATACACCGTCATAAAGTCTGCTAGGCAATAAGC-CTGA
1 TATAATACACCGGCATAAAGCCTGCTAGGCAATAAGCTC-GA
* * *
71419571 TATCATACACCTGCATCAAAGCCTGC-AGGCAATAAGCTTGA
1 TATAATACACCGGCAT-AAAGCCTGCTAGGCAATAAGCTCGA
71419612 TAT
1 TAT
71419615 TATATCACTA
Statistics
Matches: 107, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
40 14 0.13
41 72 0.67
42 21 0.20
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.21
Consensus pattern (41 bp):
TATAATACACCGGCATAAAGCCTGCTAGGCAATAAGCTCGA
Found at i:71421754 original size:189 final size:189
Alignment explanation
Indices: 71421429--71421812 Score: 750
Period size: 189 Copynumber: 2.0 Consensus size: 189
71421419 CCCCAAACCT
71421429 GGCCCAGACATTATGGCCAAGTCTGGTGTGTCACATTGAAGTGTTTTTCGAAAACCATGTTTTCA
1 GGCCCAGACATTATGGCCAAGTCTGGTGTGTCACATTGAAGTGTTTTTCGAAAACCATGTTTTCA
* *
71421494 TTGAAAACCCTTCTTGATGTTTAAAAACTTTTACTGTTTTAATTTGTATAAAACCTTAGCCTTTT
66 TTGAAAACCCTTCTTGATGTTTAAAAACTTTTACTGTTTTAACTTGTATAAAACCTTAGCCTTTC
71421559 CCAAAATGTGATTCATTGTAATAATCAAAACATTGTTAACAACCTTGTAAAATCTTACG
131 CCAAAATGTGATTCATTGTAATAATCAAAACATTGTTAACAACCTTGTAAAATCTTACG
71421618 GGCCCAGACATTATGGCCAAGTCTGGTGTGTCACATTGAAGTGTTTTTCGAAAACCATGTTTTCA
1 GGCCCAGACATTATGGCCAAGTCTGGTGTGTCACATTGAAGTGTTTTTCGAAAACCATGTTTTCA
71421683 TTGAAAACCCTTCTTGATGTTTAAAAACTTTTACTGTTTTAACTTGTATAAAACCTTAGCCTTTC
66 TTGAAAACCCTTCTTGATGTTTAAAAACTTTTACTGTTTTAACTTGTATAAAACCTTAGCCTTTC
71421748 CCAAAATGTGATTCATTGTAATAATCAAAACATTGTTAACAACCTTGTAAAATCTTACG
131 CCAAAATGTGATTCATTGTAATAATCAAAACATTGTTAACAACCTTGTAAAATCTTACG
71421807 GGCCCA
1 GGCCCA
71421813 TACGGGTAAA
Statistics
Matches: 193, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
189 193 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (189 bp):
GGCCCAGACATTATGGCCAAGTCTGGTGTGTCACATTGAAGTGTTTTTCGAAAACCATGTTTTCA
TTGAAAACCCTTCTTGATGTTTAAAAACTTTTACTGTTTTAACTTGTATAAAACCTTAGCCTTTC
CCAAAATGTGATTCATTGTAATAATCAAAACATTGTTAACAACCTTGTAAAATCTTACG
Found at i:71422966 original size:19 final size:18
Alignment explanation
Indices: 71422929--71422972 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
71422919 ATACATACAG
71422929 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
71422946 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
71422965 TACTAATT
1 TAATAATT
71422973 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:71434637 original size:49 final size:49
Alignment explanation
Indices: 71434560--71434804 Score: 319
Period size: 49 Copynumber: 4.9 Consensus size: 49
71434550 TAGCTGAAGC
* * * *
71434560 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
71434609 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * *
71434659 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * * *
71434710 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * *
71434759 TATCTGGTACACGCACTAGCCTACACTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
71434805 TCACAATAGC
Statistics
Matches: 168, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 81 0.48
50 48 0.29
51 39 0.23
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:71434743 original size:101 final size:98
Alignment explanation
Indices: 71434573--71434804 Score: 320
Period size: 100 Copynumber: 2.3 Consensus size: 98
71434563 CTGGTACGCA
* * * *
71434573 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
71434638 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGTGACC-AACCATCTGATACACG
* *
71434672 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* ** *
71434737 TAGTACTACACATGTGACCAATTATCTGGTACACG
64 TAGTACTACACACGTGACCAACCATCTGATACACG
* * *
71434772 CACTAGCCTACACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
71434805 TCACAATAGC
Statistics
Matches: 117, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
99 30 0.26
100 44 0.38
101 43 0.37
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGTGACCAACCATCTGATACACG
Found at i:71435485 original size:30 final size:30
Alignment explanation
Indices: 71435451--71435507 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
71435441 CTTTAATACG
*
71435451 AACTTTGGCAAAATTAC-CATTTTGCCCATA
1 AACTTTGACAAAATTACAC-TTTTGCCCATA
*
71435481 AACTTTTACAAAATTACACTTTTGCCC
1 AACTTTGACAAAATTACACTTTTGCCC
71435508 TTAGGCTCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.33, C:0.25, G:0.07, T:0.35
Consensus pattern (30 bp):
AACTTTGACAAAATTACACTTTTGCCCATA
Found at i:71437523 original size:15 final size:15
Alignment explanation
Indices: 71437494--71437532 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
71437484 AACAGAGAAG
71437494 CCAAGAATAAAGAAAT
1 CCAAG-ATAAAGAAAT
71437510 CCAAGATAAAGAAAT
1 CCAAGATAAAGAAAT
*
71437525 CCATGATA
1 CCAAGATA
71437533 CGAGAATCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.56, C:0.15, G:0.13, T:0.15
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:71440404 original size:51 final size:49
Alignment explanation
Indices: 71440280--71440474 Score: 264
Period size: 49 Copynumber: 3.9 Consensus size: 49
71440270 CAGCCGAAGC
* *
71440280 TATCTGGTACGCATAGTACCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * * *
71440329 TATCCGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-T
* *
71440380 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* *
71440429 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC
71440475 TCACAATAGC
Statistics
Matches: 125, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 80 0.64
50 6 0.05
51 39 0.31
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:71440447 original size:100 final size:100
Alignment explanation
Indices: 71440274--71440472 Score: 344
Period size: 100 Copynumber: 2.0 Consensus size: 100
71440264 CACTTGCAGC
*
71440274 CGAAGCTATCTGGTACGCATAGTACCCTGCACTTAGTACTACACATGCGACCAATTATCCGATAC
1 CGAAGCTATCAGGTACGCATAGTACCCTGCACTTAGTACTACACATGCGACCAATTATCCGATAC
71440339 ACGTAGTAGCCTGCACTTAGTACTACACACGTGAT
66 ACGTAGTAGCCTGCACTTAGTACTACACACGTGAT
* * * *
71440374 CGAAGTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTAC
1 CGAAGCTATCAGGTACGCATAGTACCCTGCACTTAGTACTACACATGCGACCAATTATCCGATAC
*
71440439 ACGTAGTAGCCTGCACTTAGTACTACACATGTGA
66 ACGTAGTAGCCTGCACTTAGTACTACACACGTGA
71440473 CCTCACAATA
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 93 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (100 bp):
CGAAGCTATCAGGTACGCATAGTACCCTGCACTTAGTACTACACATGCGACCAATTATCCGATAC
ACGTAGTAGCCTGCACTTAGTACTACACACGTGAT
Found at i:71441150 original size:30 final size:30
Alignment explanation
Indices: 71441116--71441175 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
71441106 CTTTAATACG
*
71441116 AACTTTGGCAAAATTAC-CATTTTACCCCTA
1 AACTTTGACAAAATTACAC-TTTTACCCCTA
* *
71441146 AACTTTTACAAAATTACACTTTTTCCCCTA
1 AACTTTGACAAAATTACACTTTTACCCCTA
71441176 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.33, C:0.27, G:0.03, T:0.37
Consensus pattern (30 bp):
AACTTTGACAAAATTACACTTTTACCCCTA
Found at i:71448505 original size:10 final size:10
Alignment explanation
Indices: 71448478--71448526 Score: 64
Period size: 10 Copynumber: 4.9 Consensus size: 10
71448468 TTAAATTCTA
71448478 AAAGATAAAT
1 AAAGATAAAT
71448488 ACAA-ATAAAT
1 A-AAGATAAAT
*
71448498 AAAGATAATT
1 AAAGATAAAT
71448508 AAAGATAAAT
1 AAAGATAAAT
*
71448518 GAAGATAAA
1 AAAGATAAA
71448527 AGCTAAAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.06
10 30 0.88
11 2 0.06
ACGTcount: A:0.67, C:0.02, G:0.10, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:71448837 original size:31 final size:31
Alignment explanation
Indices: 71448799--71448864 Score: 132
Period size: 31 Copynumber: 2.1 Consensus size: 31
71448789 TAAACATATA
71448799 ATTAATACATAAAAATATGTCATTCTAGTGT
1 ATTAATACATAAAAATATGTCATTCTAGTGT
71448830 ATTAATACATAAAAATATGTCATTCTAGTGT
1 ATTAATACATAAAAATATGTCATTCTAGTGT
71448861 ATTA
1 ATTA
71448865 TTACCGATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.39
Consensus pattern (31 bp):
ATTAATACATAAAAATATGTCATTCTAGTGT
Found at i:71452405 original size:10 final size:10
Alignment explanation
Indices: 71452386--71452434 Score: 55
Period size: 10 Copynumber: 4.8 Consensus size: 10
71452376 AACTCTATTG
71452386 AAAA-TAATC
1 AAAATTAATC
71452395 AAAATTAATC
1 AAAATTAATC
*
71452405 AAAATTTAATAT
1 AAAA-TTAAT-C
*
71452417 AAAATTAATT
1 AAAATTAATC
71452427 AAAATTAA
1 AAAATTAA
71452435 ACATGTTAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
9 4 0.11
10 18 0.50
11 10 0.28
12 4 0.11
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (10 bp):
AAAATTAATC
Found at i:71453604 original size:31 final size:31
Alignment explanation
Indices: 71453561--71453624 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
71453551 CCTTTTCATA
71453561 TTTCATAATTCATAACACTGGGCCAAAGCCT
1 TTTCATAATTCATAACACTGGGCCAAAGCCT
* ** *
71453592 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCAAAGCCT
71453623 TT
1 TT
71453625 ACTGTAAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCAAAGCCT
Found at i:71453868 original size:24 final size:24
Alignment explanation
Indices: 71453837--71453957 Score: 192
Period size: 24 Copynumber: 5.1 Consensus size: 24
71453827 GCCTAGCCTT
*
71453837 TTTTAATAACTGGGGCAAAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
*
71453861 TTTTAATAACTGGGGCGTAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
71453885 -TTTAATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
* *
71453908 TTTTGATAACTGGGGCATAAACCC
1 TTTTAATAACTGGGGCATAAGCCC
71453932 -TTTAATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
71453955 TTT
1 TTT
71453958 CGCACTTCCT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
23 43 0.49
24 45 0.51
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
TTTTAATAACTGGGGCATAAGCCC
Found at i:71453892 original size:23 final size:23
Alignment explanation
Indices: 71453838--71453957 Score: 186
Period size: 23 Copynumber: 5.1 Consensus size: 23
71453828 CCTAGCCTTT
*
71453838 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
71453861 TTTTAATAACTGGGGCGTAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
71453885 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
71453908 TTTTGATAACTGGGGCATAAACCC
1 -TTTAATAACTGGGGCATAAGCCC
71453932 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
71453955 TTT
1 TTT
71453958 CGCACTTCCT
Statistics
Matches: 88, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
23 46 0.52
24 42 0.48
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:71453906 original size:47 final size:47
Alignment explanation
Indices: 71453838--71453957 Score: 204
Period size: 47 Copynumber: 2.6 Consensus size: 47
71453828 CCTAGCCTTT
* * *
71453838 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAACCC
*
71453885 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAACCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAACCC
71453932 TTTAATAACTGGGGCATAAGCCCTTT
1 TTTAATAACTGGGGCATAAGCCCTTT
71453958 CGCACTTCCT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAACCC
Found at i:71454030 original size:9 final size:9
Alignment explanation
Indices: 71454016--71454072 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
71454006 ATCTCATGTG
71454016 CATATCATA
1 CATATCATA
*
71454025 CATATCATGTG
1 CATATCA--TA
71454036 CATATCATA
1 CATATCATA
* *
71454045 CATGTCATGTG
1 CATATCA--TA
71454056 CATATCATA
1 CATATCATA
71454065 CATATCAT
1 CATATCAT
71454073 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:71454032 original size:20 final size:20
Alignment explanation
Indices: 71454004--71454074 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
71453994 GCATTTATGA
*
71454004 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
71454024 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
71454044 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
71454064 ACATATCATGT
1 ACATATCATGT
71454075 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:71454039 original size:11 final size:11
Alignment explanation
Indices: 71454009--71454063 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
71453999 TATGAACATC
71454009 TCATGTGCATA
1 TCATGTGCATA
*
71454020 TCA--TACATA
1 TCATGTGCATA
71454029 TCATGTGCATA
1 TCATGTGCATA
* *
71454040 TCA--TACATG
1 TCATGTGCATA
71454049 TCATGTGCATA
1 TCATGTGCATA
71454060 TCAT
1 TCAT
71454064 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:71454150 original size:25 final size:24
Alignment explanation
Indices: 71454111--71454158 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
71454101 ATATATAAAC
* *
71454111 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAATGGTCA-TTTTA
71454136 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
71454159 CATGTTATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (24 bp):
CCTAGGGGCAAAATGGTCATTTTA
Found at i:71462898 original size:47 final size:47
Alignment explanation
Indices: 71462814--71463209 Score: 451
Period size: 47 Copynumber: 8.6 Consensus size: 47
71462804 TATTTGAATA
**
71462814 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGATGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
71462863 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
71462910 AATGTGAAAGTGTATATATATGTGATAAGGCCAAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
71462959 AATGTGAAAGTG----TA-GCCGA-ATGGCC-AAT-G-TGATGAATG-TG
1 AATGTGAAAGTGTATATATG-TGATAAGGCCTAATGGCCGATG--TGATG
* *
71462999 AAAGT----GTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
71463042 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
71463089 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
71463136 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
71463183 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
71463210 TCCCGAAGGG
Statistics
Matches: 300, Mismatches: 28, Indels: 40
0.82 0.08 0.11
Matches are distributed among these distances:
36 2 0.01
39 3 0.01
40 11 0.04
41 11 0.04
42 11 0.04
43 11 0.04
44 4 0.01
47 189 0.63
49 58 0.19
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:71462988 original size:83 final size:84
Alignment explanation
Indices: 71462890--71463150 Score: 348
Period size: 83 Copynumber: 3.0 Consensus size: 84
71462880 ATGTGATAAG
* *
71462890 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCAAATGGCCAATGT
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
71462955 GATGAATGTGAAAGTGTA-
66 GATGAATGTGAAAGTGTAT
71462973 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
71463038 GATGAATGTGAAAGTGTATATATGTGAT
66 GATGAATGTGAAA--G------TGT-AT
* * *
71463066 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGA
1 ---GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
71463129 TGTGATGAATGTGAAAGTGTAT
63 TGTGATGAATGTGAAAGTGTAT
71463151 ATATGTGACA
Statistics
Matches: 160, Mismatches: 5, Indels: 24
0.85 0.03 0.13
Matches are distributed among these distances:
83 76 0.47
85 3 0.02
86 3 0.02
91 3 0.02
92 2 0.01
94 44 0.28
96 29 0.18
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (84 bp):
GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
GATGAATGTGAAAGTGTAT
Found at i:71463039 original size:179 final size:177
Alignment explanation
Indices: 71462814--71463149 Score: 591
Period size: 179 Copynumber: 1.9 Consensus size: 177
71462804 TATTTGAATA
*
71462814 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGATGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGACGATGTGATGAATGTGAAAGTGTATA
*
71462879 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCAA
66 TATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCAA
71462944 ATGGCCAATGTGATGAATGTGAAAGTGTAGCCGAATGGCCAATGTGATG
129 ATGGCCAATGTGATGAATGTGAAAGTGTAGCCGAATGGCCAATGTGATG
*
71462993 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGACGATGTGATGAATGTGAAAGTGTATA
* * *
71463058 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAAT
*
71463123 GGCCGATGTGATGAATGTGAAAGTGTA
131 GGCCAATGTGATGAATGTGAAAGTGTA
71463150 TATATGTGAC
Statistics
Matches: 150, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
177 47 0.31
179 103 0.69
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (177 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGACGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAAT
GGCCAATGTGATGAATGTGAAAGTGTAGCCGAATGGCCAATGTGATG
Found at i:71465208 original size:31 final size:31
Alignment explanation
Indices: 71465165--71465228 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
71465155 CCTTTTCATA
*
71465165 TTTCATAATTCATAACACTGGTCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
71465196 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
71465227 TT
1 TT
71465229 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:71465548 original size:23 final size:24
Alignment explanation
Indices: 71465435--71465563 Score: 215
Period size: 24 Copynumber: 5.4 Consensus size: 24
71465425 CTGGAGGCCT
*
71465435 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
71465460 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
71465484 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
71465508 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
71465532 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
71465555 AGCCCTTTT
1 AGCCCTTTT
71465564 GCACTTCCTC
Statistics
Matches: 100, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
23 22 0.22
24 74 0.74
25 4 0.04
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:71465637 original size:20 final size:20
Alignment explanation
Indices: 71465609--71465659 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
71465599 GCATTTATGA
* *
71465609 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCAGATCAT
71465629 ACATATCATGTGCAGATCAT
1 ACATATCATGTGCAGATCAT
71465649 ACATATCATGT
1 ACATATCATGT
71465660 TTCTTAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ACATATCATGTGCAGATCAT
Done.