Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 219 of 333
Found at i:72174996 original size:90 final size:90
Alignment explanation
Indices: 72174837--72175286 Score: 697
Period size: 90 Copynumber: 5.0 Consensus size: 90
72174827 GCCATGTTAA
* *
72174837 TATCTTTGATCTGCTCCCCGTCAAATATAGAGACGCCAAATCT-TCTATCTTCGATCTGCTTCGA
1 TATCTTCGATCTGCTCCCCGTCTAATATAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTTCGA
*
72174901 CGTAAACACACGAATGTCAGATCTGC
65 TGTAAACACACGAATGTCAGATCTGC
* * * *
72174927 TATCTTCGATCTGCTCCTCGTCTAATACAGAGACTCCAAATCTGTCATCTTCGATCTGCTTTGAT
1 TATCTTCGATCTGCTCCCCGTCTAATATAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
*
72174992 GTAAACACACG-ATGTCAGATTTGC
66 GTAAACACACGAATGTCAGATCTGC
* * *
72175016 TATCTTCGATCTGCTCCCCGTCTAATATAGAGACGCCAAATCTATCATATTCGATCTGCTTCAAT
1 TATCTTCGATCTGCTCCCCGTCTAATATAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
*
72175081 GTAAACACACGAATGTCAGATCTGT
66 GTAAACACACGAATGTCAGATCTGC
* * *
72175106 TATCTTCGATCTACTCCCCGTCTAATATAGAGACTCCGAATCTGTCATCTTCGATCTGCTTCGAT
1 TATCTTCGATCTGCTCCCCGTCTAATATAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
*
72175171 GTAAACACACGAATGTCAGATCTAC
66 GTAAACACACGAATGTCAGATCTGC
* *
72175196 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGTTTCGAT
1 TATCTTCGATCTGCTCCCCGTCTAATATAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
* *
72175261 ATAAACACACGAATGTAAGATCTGC
66 GTAAACACACGAATGTCAGATCTGC
72175286 T
1 T
72175287 CCCCGTCTAA
Statistics
Matches: 325, Mismatches: 33, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
89 81 0.25
90 242 0.74
91 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (90 bp):
TATCTTCGATCTGCTCCCCGTCTAATATAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
GTAAACACACGAATGTCAGATCTGC
Found at i:72175284 original size:45 final size:45
Alignment explanation
Indices: 72175145--72175284 Score: 110
Period size: 45 Copynumber: 3.1 Consensus size: 45
72175135 GAGACTCCGA
* * *
72175145 ATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAG
1 ATCTGTCATCTTCGATCTGTTTCGATATAAACACACGAATGTAAG
* ** * * * *
72175190 ATCT-ACTATCTTCGATCTGCTCCCCG-TCT-AATACA-GAGACGCCAA-
1 ATCTGTC-ATCTTCGATCTG-T-TTCGATATAAACACACGA-ATG-TAAG
72175235 ATCTGTCATCTTCGATCTGTTTCGATATAAACACACGAATGTAAG
1 ATCTGTCATCTTCGATCTGTTTCGATATAAACACACGAATGTAAG
72175280 ATCTG
1 ATCTG
72175285 CTCCCCGTCT
Statistics
Matches: 69, Mismatches: 16, Indels: 20
0.66 0.15 0.19
Matches are distributed among these distances:
43 2 0.03
44 8 0.12
45 51 0.74
46 6 0.09
47 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.31
Consensus pattern (45 bp):
ATCTGTCATCTTCGATCTGTTTCGATATAAACACACGAATGTAAG
Found at i:72175346 original size:75 final size:76
Alignment explanation
Indices: 72175203--72175361 Score: 275
Period size: 75 Copynumber: 2.1 Consensus size: 76
72175193 TACTATCTTC
* *
72175203 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGTTTCGATATAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATATAAAAA
72175268 CACGAATGTAA
66 CACGAATGTAA
*
72175279 GATCTGCTCCCCGTCTAATACAGAGACG-CAAATCTGTCATCTTCGATCTGCTTCGATGTAAAAA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATATAAAAA
*
72175343 CACGAATGTCA
66 CACGAATGTAA
72175354 GATCTGCT
1 GATCTGCT
72175362 ATCTTCGATC
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
75 51 0.65
76 28 0.35
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (76 bp):
GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATATAAAAA
CACGAATGTAA
Found at i:72175404 original size:45 final size:44
Alignment explanation
Indices: 72175279--72175407 Score: 115
Period size: 45 Copynumber: 2.9 Consensus size: 44
72175269 ACGAATGTAA
*
72175279 GATCTGCTCCCCGTCTAATACAGAGACGCAAATCTG-TCATCTTC
1 GATCTGCTCCCCGTCTAATACAAAGACGCAAATCTGCT-ATCTTC
* * * *
72175323 GATCTGCT--TCGATGTAA-A-AACACGAATGTCAGATCTGCTATCTTC
1 GATCTGCTCCCCG-TCTAATACAA-A-G-ACG-CAAATCTGCTATCTTC
72175368 GATCTGCTCCCCGTCTAATACAAAGACGCCAAATCTGCTA
1 GATCTGCTCCCCGTCTAATACAAAGACG-CAAATCTGCTA
72175408 ACGGTGATCT
Statistics
Matches: 65, Mismatches: 10, Indels: 19
0.69 0.11 0.20
Matches are distributed among these distances:
41 1 0.02
42 4 0.06
43 5 0.08
44 10 0.15
45 33 0.51
46 6 0.09
47 4 0.06
48 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (44 bp):
GATCTGCTCCCCGTCTAATACAAAGACGCAAATCTGCTATCTTC
Found at i:72186656 original size:119 final size:113
Alignment explanation
Indices: 72186436--72186647 Score: 262
Period size: 119 Copynumber: 1.8 Consensus size: 113
72186426 ATACATGATA
* * * ** *
72186436 CATACTTTAACATTTCATGCAAATATAATATAGAAAATGATAAAAAAACGACATAAATTACATAA
1 CATACATTAACATTTCATGCAAATACAACATAGAAAACAATAAAAAAACAACATAAATTACATAA
* *
72186501 TATACATTAACATTTCATGCAGATATAATCATAAATAACATAAATATG
66 TATACAATAACATTTCATGCAAATATAATCATAAATAACATAAATATG
* * *
72186549 CATACATTAACATTTCATGCAAAATACAACATAGAAAACAATGAATATAACAATATAAATTACAT
1 CATACATTAACATTTCATGC-AAATACAACATAGAAAACAAT-AAAAAAACAACATAAATTAC--
*
72186614 AATATATATACAATAATATTTCATGCAAATATAA
62 -ATA-ATATACAATAACATTTCATGCAAATATAA
72186648 CTTAAAATAT
Statistics
Matches: 81, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
113 19 0.23
114 17 0.21
115 16 0.20
118 3 0.04
119 26 0.32
ACGTcount: A:0.52, C:0.13, G:0.05, T:0.30
Consensus pattern (113 bp):
CATACATTAACATTTCATGCAAATACAACATAGAAAACAATAAAAAAACAACATAAATTACATAA
TATACAATAACATTTCATGCAAATATAATCATAAATAACATAAATATG
Found at i:72186712 original size:18 final size:18
Alignment explanation
Indices: 72186689--72186723 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
72186679 ATGCAAATAT
*
72186689 ATAAAAACGATAAATAAC
1 ATAAAAACAATAAATAAC
*
72186707 ATAAAAATAATAAATAA
1 ATAAAAACAATAAATAA
72186724 TTTATGAGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.71, C:0.06, G:0.03, T:0.20
Consensus pattern (18 bp):
ATAAAAACAATAAATAAC
Found at i:72187107 original size:7 final size:7
Alignment explanation
Indices: 72187095--72187230 Score: 82
Period size: 7 Copynumber: 18.4 Consensus size: 7
72187085 AATTATACAT
72187095 AATAATA
1 AATAATA
72187102 AATAATA
1 AATAATA
72187109 AATAATA
1 AATAATA
72187116 TAATATATA
1 -AATA-ATA
*
72187125 ATAAAATA
1 A-ATAATA
72187133 AA-AATA
1 AATAATA
*
72187139 ATATAATG
1 A-ATAATA
72187147 AATAATA
1 AATAATA
72187154 TATATAATAA
1 -A-ATAAT-A
*
72187164 AATGATA
1 AATAATA
72187171 TAATATATA
1 -AATA-ATA
*
72187180 ATAAAATA
1 A-ATAATA
*
72187188 TATAATA
1 AATAATA
72187195 AATAATA
1 AATAATA
*
72187202 CATAAATA
1 AAT-AATA
72187210 AA-AAT-
1 AATAATA
72187215 AAT-ATA
1 AATAATA
*
72187221 TATAATA
1 AATAATA
72187228 AAT
1 AAT
72187231 TTTTTACATA
Statistics
Matches: 101, Mismatches: 13, Indels: 30
0.70 0.09 0.21
Matches are distributed among these distances:
5 4 0.04
6 10 0.10
7 40 0.40
8 30 0.30
9 16 0.16
10 1 0.01
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.32
Consensus pattern (7 bp):
AATAATA
Found at i:72187117 original size:26 final size:25
Alignment explanation
Indices: 72187088--72187228 Score: 139
Period size: 26 Copynumber: 5.4 Consensus size: 25
72187078 TTTTTAAAAT
72187088 TATACATAATAATAAATAATAAATAA
1 TATA-ATAATAATAAATAATAAATAA
72187114 TATAATATATAATAAAATAA-AAATAA
1 TATAATA-ATAAT-AAATAATAAATAA
*
72187140 TATAATGAATAATATATATAATAAAATGA
1 TATAAT-AATAATA-A-ATAAT-AAATAA
*
72187169 TATAATATATAAT-AA-AATATATAA
1 TATAATA-ATAATAAATAATAAATAA
72187193 TA-AATAATACATAAATAA-AAATAA
1 TATAATAATA-ATAAATAATAAATAA
72187217 TATATATAATAA
1 TATA-ATAATAA
72187229 ATTTTTTACA
Statistics
Matches: 98, Mismatches: 4, Indels: 27
0.76 0.03 0.21
Matches are distributed among these distances:
22 3 0.03
23 6 0.06
24 15 0.15
25 11 0.11
26 34 0.35
27 12 0.12
28 1 0.01
29 16 0.16
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (25 bp):
TATAATAATAATAAATAATAAATAA
Found at i:72187245 original size:65 final size:67
Alignment explanation
Indices: 72187103--72187229 Score: 188
Period size: 67 Copynumber: 1.9 Consensus size: 67
72187093 ATAATAATAA
* * *
72187103 ATAATAAATAATATAATATATAATAAAATAAAAATAATATAATGAATAATATATATAATAAAATG
1 ATAATATATAATAAAATATATAATAAAATAAAAATAATATAATAAATAATATATATAATAAAATG
72187168 AT
66 AT
*
72187170 ATAATATATAATAAAATATATAAT-AAATAATACATAA-ATAA-AAATAATATATATAATAAA
1 ATAATATATAATAAAATATATAATAAAATAA-AAATAATATAATAAATAATATATATAATAAA
72187230 TTTTTTACAT
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
65 18 0.33
66 10 0.18
67 27 0.49
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (67 bp):
ATAATATATAATAAAATATATAATAAAATAAAAATAATATAATAAATAATATATATAATAAAATG
AT
Found at i:72187248 original size:33 final size:32
Alignment explanation
Indices: 72187147--72187250 Score: 97
Period size: 33 Copynumber: 3.2 Consensus size: 32
72187137 TAATATAATG
*
72187147 AATAATATATATAATAAAATGATATA-ATATAT-
1 AATAATATATATAAT-AAAT-TTATACATATATA
* * *
72187179 AATAAAATATATAATAAA-TAATACATAAATAAA
1 AATAATATATATAATAAATTTATACAT--ATATA
*
72187212 AATAATATATATAATAAATTTTTTACATATATA
1 AATAATATATATAATAAA-TTTATACATATATA
72187245 AATAAT
1 AATAAT
72187251 GTTTATAGTA
Statistics
Matches: 58, Mismatches: 8, Indels: 11
0.75 0.10 0.14
Matches are distributed among these distances:
29 3 0.05
30 2 0.03
31 3 0.05
32 17 0.29
33 27 0.47
35 6 0.10
ACGTcount: A:0.61, C:0.02, G:0.01, T:0.37
Consensus pattern (32 bp):
AATAATATATATAATAAATTTATACATATATA
Found at i:72187293 original size:16 final size:16
Alignment explanation
Indices: 72187261--72187310 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
72187251 GTTTATAGTA
72187261 AAAATAAAT-AATATAT
1 AAAATAAATAAAT-TAT
72187277 AAAATAAATAAATTAT
1 AAAATAAATAAATTAT
*
72187293 -ATATAAA-AAATT-T
1 AAAATAAATAAATTAT
72187306 AAAAT
1 AAAAT
72187311 GGATTAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
13 1 0.03
14 8 0.27
15 6 0.20
16 12 0.40
17 3 0.10
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
AAAATAAATAAATTAT
Found at i:72187308 original size:20 final size:20
Alignment explanation
Indices: 72187105--72187300 Score: 78
Period size: 20 Copynumber: 10.1 Consensus size: 20
72187095 AATAATAAAT
72187105 AATAAATAATATAATATATAA
1 AATAAATAA-ATAATATATAA
* *
72187126 TA-AAATAAA-AATA-ATAT
1 AATAAATAAATAATATATAA
*
72187143 AATGAAT-AAT-ATATATAA
1 AATAAATAAATAATATATAA
* *
72187161 TA-AAATGATATAATATATAA
1 AATAAAT-AAATAATATATAA
* * *
72187181 TA-AAATATATAATAAATAA
1 AATAAATAAATAATATATAA
72187200 TACATAAATAAA-AATA-AT-A
1 -A-ATAAATAAATAATATATAA
* * *
72187219 TATATAATAAAT--T-TTTTA
1 AATA-AATAAATAATATATAA
* * * *
72187237 CATATATAAATAATGTTTATAGT
1 AATAAATAAATAA--TATATA-A
72187260 AA-AAATAAATAATATATAA
1 AATAAATAAATAATATATAA
*
72187279 AATAAATAAATTATATATAA
1 AATAAATAAATAATATATAA
72187299 AA
1 AA
72187301 AATTTAAAAT
Statistics
Matches: 132, Mismatches: 23, Indels: 41
0.67 0.12 0.21
Matches are distributed among these distances:
17 23 0.17
18 21 0.16
19 18 0.14
20 45 0.34
21 7 0.05
22 17 0.13
23 1 0.01
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (20 bp):
AATAAATAAATAATATATAA
Found at i:72187504 original size:30 final size:30
Alignment explanation
Indices: 72187470--72187527 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
72187460 ATAATGATCA
*
72187470 TTAGGACTAAATTGA-AACAAAAATAAAAGG
1 TTAGGACCAAATT-ATAACAAAAATAAAAGG
* *
72187500 TTAGGGCCAAATTATAATAAAAATAAAA
1 TTAGGACCAAATTATAACAAAAATAAAA
72187528 TGAAATTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.22
Consensus pattern (30 bp):
TTAGGACCAAATTATAACAAAAATAAAAGG
Found at i:72191964 original size:38 final size:38
Alignment explanation
Indices: 72191922--72191999 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
72191912 CAACCAATTA
*
72191922 TCATTGGGGTTAATTGTGGTTTATGTTTTGACCCATTG
1 TCATTGGGGTTAATTGTGGTTTATGTTTCGACCCATTG
*
72191960 TCATTGGGGTTAATTGTGGTTTATGTTTCGACCTATTG
1 TCATTGGGGTTAATTGTGGTTTATGTTTCGACCCATTG
72191998 TC
1 TC
72192000 TGTAACAACC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.15, C:0.12, G:0.26, T:0.47
Consensus pattern (38 bp):
TCATTGGGGTTAATTGTGGTTTATGTTTCGACCCATTG
Found at i:72205843 original size:13 final size:13
Alignment explanation
Indices: 72205825--72205850 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72205815 TAAGCAATCG
72205825 CACACGGGCATGT
1 CACACGGGCATGT
72205838 CACACGGGCATGT
1 CACACGGGCATGT
72205851 TCCTATCGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.31, T:0.15
Consensus pattern (13 bp):
CACACGGGCATGT
Found at i:72214730 original size:13 final size:13
Alignment explanation
Indices: 72214712--72214738 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
72214702 GAAGTAATCA
72214712 CACACGGGCGTGT
1 CACACGGGCGTGT
72214725 CACACGGGCGTGT
1 CACACGGGCGTGT
72214738 C
1 C
72214739 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:72219753 original size:38 final size:38
Alignment explanation
Indices: 72219711--72219791 Score: 99
Period size: 38 Copynumber: 2.1 Consensus size: 38
72219701 TCTTTTAATA
* * * *
72219711 TTTTTGTTCTAACCAATTGTCATTGGGGTTAATTGTGG
1 TTTTTGTTCTAACCAATTGTCACTAGGATTAATTATGG
* * *
72219749 TTTTTGTTTTGACCCATTGTCACTAGGATTAATTATGG
1 TTTTTGTTCTAACCAATTGTCACTAGGATTAATTATGG
72219787 TTTTT
1 TTTTT
72219792 TATATTTGTC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.19, C:0.11, G:0.20, T:0.51
Consensus pattern (38 bp):
TTTTTGTTCTAACCAATTGTCACTAGGATTAATTATGG
Found at i:72220098 original size:38 final size:38
Alignment explanation
Indices: 72220056--72220136 Score: 99
Period size: 38 Copynumber: 2.1 Consensus size: 38
72220046 CTTTTAATAC
* *
72220056 TTTTGTTCCAAAAAATTGCCATTTGGGTTAATTATGGT
1 TTTTGTTCCAAAAAATTGCCACTGGGGTTAATTATGGT
* * ***
72220094 TTTTGTTTCGACCCATTGCCACTGGGGTTAATTATGGT
1 TTTTGTTCCAAAAAATTGCCACTGGGGTTAATTATGGT
72220132 TTTTG
1 TTTTG
72220137 ACATTTGTCA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.20, C:0.14, G:0.21, T:0.46
Consensus pattern (38 bp):
TTTTGTTCCAAAAAATTGCCACTGGGGTTAATTATGGT
Found at i:72220157 original size:344 final size:344
Alignment explanation
Indices: 72219422--72220400 Score: 1529
Period size: 341 Copynumber: 2.9 Consensus size: 344
72219412 AGGGGTGTTA
* * *
72219422 CATTGTCACTAGGGTTAATTATGG-TTTTGACATTTGTCATTGGGGCTAAGGGATAAAAAATGGG
1 CATTGTCACTAGGGTTAATTATGGTTTTTGACATTTGTCATCGGGGTTAAGGGATAAAAAAAGGG
*
72219486 TGTTGTTA-TTTTTTTATCTATCAGTATTTCAGAAATTATTGATTTGTCTTTATCACAGTTTTGA
66 AGTTGTTATTTTTTTTATCTATCAGTATTTCAGAAATTATTGATTTGTCTTTATCACAGTTTTGA
* *
72219550 CACAGAATATGGTTTGAATTATTTATTGTGGTATAATCATAAATTTTACAATTATGGATTTTTTA
131 CACGGAATATGCTTTGAATTATTTATTGTGGTATAATCATAAATTTTACAATTATGGATTTTTTA
** *
72219615 CTAAATATTTAGCTTAAATGC-TTTGTGCTTGCTTAACTCAACCAAGGGAAATTATAGTTACTTG
196 CTAAATATTTAGCTTAAATGCTTTTGTGCTTGCTTAACTCAACCAAGGGAAATGCTAGTTACTTA
* ** *
72219679 CTGTGTAGTTAAACTCACTCCATCTTTTAATATTTTTGTTCTAACCAATTGTCATTGGGGTTAAT
261 CTGTGTAGTTAAACTCACTCCATCTTTTAATATTTTTGTTCCAAAAAATTGCCATTGGGGTTAAT
* *
72219744 TGTGGTTTTTGTTTTGACC
326 TATGGTTTTTGTTTCGACC
* * * *
72219763 CATTGTCACTAGGATTAATTATGGTTTTTTATATTTGTCATCGGGGTTAAGAGATAAAAAAAGGG
1 CATTGTCACTAGGGTTAATTATGGTTTTTGACATTTGTCATCGGGGTTAAGGGATAAAAAAAGGG
* * * * *
72219828 AGTCGTTATTTTTTTTGTCTATCAATATTTAAGAAATTATTGATTTATCTTTATCACAGTTTTGA
66 AGTTGTTATTTTTTTTATCTATCAGTATTTCAGAAATTATTGATTTGTCTTTATCACAGTTTTGA
72219893 CACGGAATATGCTTTGAATTATTTATTGTGGTATAATCATAAATTTTACAATTATGGATTTTTTA
131 CACGGAATATGCTTTGAATTATTTATTGTGGTATAATCATAAATTTTACAATTATGGATTTTTTA
* * *
72219958 CTAAATATTTAGCTTAAATGCTTTTGTGCTTACTTAACTCAACTAAGGGAAATGCTTGTTACTTA
196 CTAAATATTTAGCTTAAATGCTTTTGTGCTTGCTTAACTCAACCAAGGGAAATGCTAGTTACTTA
* * *
72220023 CTGTGTAGTTAAGCTCACTCCATCTTTTAATACTTTTGTTCCAAAAAATTGCCATTTGGGTTAAT
261 CTGTGTAGTTAAACTCACTCCATCTTTTAATATTTTTGTTCCAAAAAATTGCCATTGGGGTTAAT
72220088 TATGGTTTTTGTTTCGACC
326 TATGGTTTTTGTTTCGACC
* * * *
72220107 CATTGCCACTGGGGTTAATTATGGTTTTTGACATTTGTCATCGAGGTTAAGGGAT-AAAAAATGG
1 CATTGTCACTAGGGTTAATTATGGTTTTTGACATTTGTCATCGGGGTTAAGGGATAAAAAAAGGG
*
72220171 AGTTGTTATTTTTTTTATCTATCAGTATTTCAG-AA-TATTGATTTGTCTTTATCACAGTTTTAA
66 AGTTGTTATTTTTTTTATCTATCAGTATTTCAGAAATTATTGATTTGTCTTTATCACAGTTTTGA
* * *
72220234 CACGGGATATGCTTTGAATTATTTATTGTGGTATAACCATAAATTTTAAAATTATGGATTTTTTA
131 CACGGAATATGCTTTGAATTATTTATTGTGGTATAATCATAAATTTTACAATTATGGATTTTTTA
* *
72220299 CTAAATATTTAGCATAAATGCTTTTGTGCTTGCTTAACCCAACCAAGGGAAATGCTAGTTACTTA
196 CTAAATATTTAGCTTAAATGCTTTTGTGCTTGCTTAACTCAACCAAGGGAAATGCTAGTTACTTA
* **
72220364 CTGTGTAATTAAACTCACTGTATCTTTTAATATTTTT
261 CTGTGTAGTTAAACTCACTCCATCTTTTAATATTTTT
72220401 ACAGGTTTTG
Statistics
Matches: 578, Mismatches: 57, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
341 203 0.35
342 42 0.07
343 173 0.30
344 160 0.28
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (344 bp):
CATTGTCACTAGGGTTAATTATGGTTTTTGACATTTGTCATCGGGGTTAAGGGATAAAAAAAGGG
AGTTGTTATTTTTTTTATCTATCAGTATTTCAGAAATTATTGATTTGTCTTTATCACAGTTTTGA
CACGGAATATGCTTTGAATTATTTATTGTGGTATAATCATAAATTTTACAATTATGGATTTTTTA
CTAAATATTTAGCTTAAATGCTTTTGTGCTTGCTTAACTCAACCAAGGGAAATGCTAGTTACTTA
CTGTGTAGTTAAACTCACTCCATCTTTTAATATTTTTGTTCCAAAAAATTGCCATTGGGGTTAAT
TATGGTTTTTGTTTCGACC
Found at i:72222633 original size:17 final size:18
Alignment explanation
Indices: 72222599--72222634 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
72222589 CATGTGGCCT
*
72222599 GCCCGTGTGGGGCCACAC
1 GCCCGTGTGGGCCCACAC
72222617 GCCCGTGT-GGCCCACAC
1 GCCCGTGTGGGCCCACAC
72222634 G
1 G
72222635 ACCCAAATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.11, C:0.42, G:0.36, T:0.11
Consensus pattern (18 bp):
GCCCGTGTGGGCCCACAC
Found at i:72222768 original size:103 final size:103
Alignment explanation
Indices: 72222579--72222775 Score: 270
Period size: 103 Copynumber: 1.9 Consensus size: 103
72222569 AAAACATGGG
* * *
72222579 CCCACACGCCCATGTGGCCTGCCCGTGTGGGGCCACACGCCCGTGTGGCCCACACGACCCAAATT
1 CCCACACGCCCATGTGGACTACCCGTGTGGGGCCACAAGCCCGTGTGGCCCACACGACCCAAATT
*
72222644 GGCTTTGGCCGTATGGATCACACGGCCTAGCCCAGAAT
66 GGCCTTGGCCGTATGGATCACACGGCCTAGCCCAGAAT
* * * *
72222682 CCCATACGCCCGTGTGGACTACCCGTGT-GGGCTCACAAGCCCGTGTGGCCCATACGGCCCAAAT
1 CCCACACGCCCATGTGGACTACCCGTGTGGGGC-CACAAGCCCGTGTGGCCCACACGACCCAAAT
* * * *
72222746 TGGCCTTGGTCGTGTGGGTCACATGGCCTA
65 TGGCCTTGGCCGTATGGATCACACGGCCTA
72222776 CCTGGCCATC
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
102 4 0.05
103 77 0.95
ACGTcount: A:0.17, C:0.36, G:0.28, T:0.19
Consensus pattern (103 bp):
CCCACACGCCCATGTGGACTACCCGTGTGGGGCCACAAGCCCGTGTGGCCCACACGACCCAAATT
GGCCTTGGCCGTATGGATCACACGGCCTAGCCCAGAAT
Found at i:72243473 original size:40 final size:40
Alignment explanation
Indices: 72243390--72243477 Score: 99
Period size: 40 Copynumber: 2.2 Consensus size: 40
72243380 AAATGGATAC
* *
72243390 ATTATCTAATTAAATATTTATATAAAATTTAGAAATTATT
1 ATTATCTAATTAAATATTTATATAAAATTTAGAAATAAAT
* * *
72243430 ATTATGTAATTAAATATTTATGTAATTTATTTA-AAA-AAAT
1 ATTATCTAATTAAATATTTATATAA--AATTTAGAAATAAAT
72243470 ATTATCTA
1 ATTATCTA
72243478 TATAATATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
40 32 0.80
41 3 0.08
42 5 0.12
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (40 bp):
ATTATCTAATTAAATATTTATATAAAATTTAGAAATAAAT
Found at i:72245312 original size:14 final size:14
Alignment explanation
Indices: 72245293--72245319 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
72245283 ATAGAAAATA
72245293 AAAAGAAACAAAAC
1 AAAAGAAACAAAAC
72245307 AAAAGAAACAAAA
1 AAAAGAAACAAAA
72245320 AGAAACAGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.81, C:0.11, G:0.07, T:0.00
Consensus pattern (14 bp):
AAAAGAAACAAAAC
Found at i:72245682 original size:17 final size:17
Alignment explanation
Indices: 72245660--72245692 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
72245650 GTATACTGAA
*
72245660 ATGGAATTGAAATTGAC
1 ATGGAAATGAAATTGAC
72245677 ATGGAAATGAAATTGA
1 ATGGAAATGAAATTGA
72245693 AATAAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.03, G:0.24, T:0.27
Consensus pattern (17 bp):
ATGGAAATGAAATTGAC
Found at i:72245890 original size:29 final size:29
Alignment explanation
Indices: 72245851--72245930 Score: 117
Period size: 28 Copynumber: 2.8 Consensus size: 29
72245841 CACTCTATGC
72245851 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGATGGATTATAT
*
72245880 TATTCTGGTGTGTTTGGGA-GGATTATAT
1 TATTCTGGTGTGTTTTGGATGGATTATAT
* * *
72245908 GATACTGGTGTGTTTTGGTTGGA
1 TATTCTGGTGTGTTTTGGATGGA
72245931 CATTTCTGGC
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
28 24 0.53
29 21 0.47
ACGTcount: A:0.16, C:0.04, G:0.33, T:0.47
Consensus pattern (29 bp):
TATTCTGGTGTGTTTTGGATGGATTATAT
Found at i:72247271 original size:80 final size:80
Alignment explanation
Indices: 72247138--72247299 Score: 279
Period size: 80 Copynumber: 2.0 Consensus size: 80
72247128 GGAGTGGGAA
* * *
72247138 TTACAAGCTTCGTAAGTTCGTATAACGGAAACTAAATTTACTAATCCCGTTTATTAAATCTAAGC
1 TTACAAGCTTAGTAAGTTCGTATAACAGAAACTAAATTTACCAATCCCGTTTATTAAATCTAAGC
72247203 ATACAATAACAAGTT
66 ATACAATAACAAGTT
* *
72247218 TTACATGCTTAGTAAGTTCGTATAACAGAAACTAAATTTACCAATCTCGTTTATTAAATCTAAGC
1 TTACAAGCTTAGTAAGTTCGTATAACAGAAACTAAATTTACCAATCCCGTTTATTAAATCTAAGC
72247283 ATACAATAACAAGTT
66 ATACAATAACAAGTT
72247298 TT
1 TT
72247300 CCATCTATTT
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 77 1.00
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (80 bp):
TTACAAGCTTAGTAAGTTCGTATAACAGAAACTAAATTTACCAATCCCGTTTATTAAATCTAAGC
ATACAATAACAAGTT
Found at i:72249782 original size:40 final size:40
Alignment explanation
Indices: 72249724--72249947 Score: 288
Period size: 40 Copynumber: 5.5 Consensus size: 40
72249714 TATTCGAATG
*
72249724 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTTCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
72249764 ATATCCGGGCTAATTCCCGAAGGCATTTGTGCAAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
72249807 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
72249847 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
72249887 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
72249927 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
72249948 ATACTTTGGT
Statistics
Matches: 163, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
39 13 0.08
40 113 0.69
41 1 0.01
43 36 0.22
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:72249867 original size:83 final size:79
Alignment explanation
Indices: 72249728--72249947 Score: 282
Period size: 83 Copynumber: 2.7 Consensus size: 79
72249718 CGAATGATAT
* * **
72249728 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTTCTATATCCGGGCTAATTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGCTATATCCGGGCTAAATCCCGAAGGCATTCA
72249793 TGCAAGTAGTTG-CTATAC
65 TGC---TAG-TGACTATAC
* *
72249811 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTG-CTATATCCGGGCTAAATCCCGAAGGCATTCA
*
72249876 TGCTAGTGACTATAT
65 TGCTAGTGACTATAC
* *
72249891 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGCTATATCCGGGCTAAATCCCGAAG
72249948 ATACTTTGGT
Statistics
Matches: 125, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
79 16 0.13
80 45 0.36
81 2 0.02
82 1 0.01
83 61 0.49
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGCTATATCCGGGCTAAATCCCGAAGGCATTCAT
GCTAGTGACTATAC
Found at i:72251909 original size:40 final size:40
Alignment explanation
Indices: 72251879--72252088 Score: 314
Period size: 40 Copynumber: 5.3 Consensus size: 40
72251869 GGACTAAGAT
* * * **
72251879 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
72251919 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
72251959 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
72251999 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
* ** * * *
72252039 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
72252078 CCGAAGGCATT
1 CCGAAGGCATT
72252089 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 33 0.21
40 126 0.79
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
Found at i:72259854 original size:40 final size:40
Alignment explanation
Indices: 72259824--72260033 Score: 314
Period size: 40 Copynumber: 5.3 Consensus size: 40
72259814 GGACTAAGAT
* * * **
72259824 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
72259864 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
72259904 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
72259944 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
* ** * * *
72259984 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
72260023 CCGAAGGCATT
1 CCGAAGGCATT
72260034 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 33 0.21
40 126 0.79
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
Found at i:72266690 original size:39 final size:40
Alignment explanation
Indices: 72266646--72266848 Score: 272
Period size: 40 Copynumber: 5.2 Consensus size: 40
72266636 CCTTCGGAGT
* *
72266646 TTAG-CCGGATATAGCT-ACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
*
72266685 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
72266725 TTAGCCCGG-TGATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGAT-ATAGTAACTCGCACAAATGCCTTCGGGAC
* *
72266765 TTAGCCCGGATAAAGTAACTCGCACAAATGCCTTCGAGA-
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * * *
72266804 TTAGCCCGGATTTAGTCACTAGCACAAATG-CTTCGAGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
72266843 TTAGCC
1 TTAGCC
72266849 TGGGTATCAA
Statistics
Matches: 150, Mismatches: 9, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
38 8 0.05
39 38 0.25
40 103 0.69
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:72297399 original size:40 final size:40
Alignment explanation
Indices: 72297344--72297605 Score: 350
Period size: 40 Copynumber: 6.5 Consensus size: 40
72297334 TATTCGGATG
72297344 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
72297384 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
72297424 ATATCC-GGCTAAGT-CCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
72297465 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
72297505 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * * *
72297545 ATATCCGGGTTAAGACCTGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
72297585 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
72297606 ATACTTTGGT
Statistics
Matches: 197, Mismatches: 20, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
38 16 0.08
39 20 0.10
40 126 0.64
41 11 0.06
42 8 0.04
43 16 0.08
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:72317369 original size:14 final size:14
Alignment explanation
Indices: 72317331--72317369 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
72317321 TTTTTAACAC
72317331 TATTTTTTCAAAAT
1 TATTTTTTCAAAAT
* * *
72317345 TGTCTTCTCAAAAT
1 TATTTTTTCAAAAT
72317359 TATTTTTTCAA
1 TATTTTTTCAA
72317370 GAACTACTGT
Statistics
Matches: 19, Mismatches: 6, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.31, C:0.13, G:0.03, T:0.54
Consensus pattern (14 bp):
TATTTTTTCAAAAT
Found at i:72317558 original size:125 final size:126
Alignment explanation
Indices: 72317116--72317764 Score: 795
Period size: 126 Copynumber: 5.2 Consensus size: 126
72317106 TAAGGTCAAG
* * * * * * * *
72317116 CAGGAACTACTGTAGAAAAAGTGCATCCATGTGGAAGGTTTTTT-AGTAATTTTGCTGATAGTGA
1 CAGGAACTACTATAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
*
72317180 ATCTTGCTTGAAGTGTTTTTTACACTATTTTTTCAGAATA-C-TCTTCTCAAAATTATTTTTT
66 ATCTTGCTTGAAGTGTTTTTGACACTATTTTTTCA-AA-ACCGTCTTCTCAAAATTATTTTTT
* * * * * * *
72317241 CAAGATCTAC-AGTAGAAAAAAAGTGTCCACGTGGGAGCTTTTTCCTGTAATTTTACTGACAGTG
1 CAGGAACTACTA-TAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTG
* * **
72317305 CATCTTGCTTGAAGCGTTTTTAACACTATTTTTTCAAAATTGTCTTCTCAAAATTATTTTTT
65 CATCTTGCTTGAAGTGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTT
* * * * *
72317367 CAAGAACTACTGTAGAAAAAGAGCGTCCACATGGGAGCTTTTTTAAGTAATTTTGTTGACAGTGC
1 CAGGAACTACTATAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* * * *
72317432 ATCCTGCTTGAAGTATTTTTGACACTATTTTTTCAGAACCGTCTTCTTAAAATTATTTTTT
66 ATCTTGCTTGAAGTGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTT
* *
72317493 -AGGAACTACTATAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAATAATTTTGCTGACAATGC
1 CAGGAACTACTATAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* * * *
72317557 ATCATGCTTGAAGCGTTTTTGACACTAATTTTTTTACAACCGTCTTCTCAAAATTATTTTTT
66 ATCTTGCTTGAAGTGTTTTTGACACT-ATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTT
* * * * * *
72317619 CAGGAACTACTGTAGCAAAAGAGCATCCACGTGGGAGCCTTTTTCAGTAATTTTGCTGATAATGC
1 CAGGAACTACTATAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* * * * *
72317684 ATCTTGTTTGAAGTGTTTTTGACATTATCTTTTCAAAACCGTCTTCTCAACATTAATTTTT
66 ATCTTGCTTGAAGTGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTT
* *
72317745 CAGAAAGTACTATAGAAAAA
1 CAGGAACTACTATAGAAAAA
72317765 AAAACAAAAC
Statistics
Matches: 449, Mismatches: 68, Indels: 13
0.85 0.13 0.02
Matches are distributed among these distances:
124 1 0.00
125 114 0.25
126 254 0.57
127 80 0.18
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (126 bp):
CAGGAACTACTATAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
ATCTTGCTTGAAGTGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTT
Found at i:72318449 original size:16 final size:16
Alignment explanation
Indices: 72318428--72318460 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
72318418 AAATTCATTT
*
72318428 TTTAAAATCTAATAAA
1 TTTAAAAGCTAATAAA
72318444 TTTAAAAGCTAATAAA
1 TTTAAAAGCTAATAAA
72318460 T
1 T
72318461 AATAATGATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.36
Consensus pattern (16 bp):
TTTAAAAGCTAATAAA
Found at i:72319384 original size:19 final size:19
Alignment explanation
Indices: 72319356--72319393 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
72319346 GATTTCTAGA
72319356 AAATAATTTACTTTTCTGG
1 AAATAATTTACTTTTCTGG
*
72319375 AAATAGTTTACTTTTCTGG
1 AAATAATTTACTTTTCTGG
72319394 TGTTTGGATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.13, T:0.47
Consensus pattern (19 bp):
AAATAATTTACTTTTCTGG
Found at i:72319536 original size:36 final size:36
Alignment explanation
Indices: 72319467--72319536 Score: 99
Period size: 36 Copynumber: 1.9 Consensus size: 36
72319457 AGAAAAGCTG
*
72319467 TTTTTACATATATTAATAAATTTATATTTTAAATTA
1 TTTTTACATATATTAATAAATTTATATTATAAATTA
72319503 TTTTTACATATATTGCAAT-AATTTAT-TTATAAAT
1 TTTTTACATATATT--AATAAATTTATATTATAAAT
72319537 AAATAAATCA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
36 21 0.68
37 7 0.23
38 3 0.10
ACGTcount: A:0.40, C:0.04, G:0.01, T:0.54
Consensus pattern (36 bp):
TTTTTACATATATTAATAAATTTATATTATAAATTA
Found at i:72321026 original size:21 final size:21
Alignment explanation
Indices: 72321001--72321042 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
72320991 TCTGTCCAAT
72321001 TTTAAAACTTATAAACATATC
1 TTTAAAACTTATAAACATATC
72321022 TTTAAAACTTATAAACATATC
1 TTTAAAACTTATAAACATATC
72321043 CTGAATATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (21 bp):
TTTAAAACTTATAAACATATC
Found at i:72322384 original size:47 final size:49
Alignment explanation
Indices: 72322315--72322528 Score: 196
Period size: 47 Copynumber: 4.6 Consensus size: 49
72322305 TAAGGTACCG
* *
72322315 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCAT-ATCTC-AAGTCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAGCCA
* * *
72322362 ATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAGCCA
* * * * *
72322410 ATG-CATGTCCCAGACAT-GTCTTATACTGGGTTA-CGTCTCGAGGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAGCCA
* * ** * * *
72322456 ATG-TATATCTTAGACGT-GTCTTACACTAGCTC-TCGTCTC-AATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAA-GCCA
72322502 ATGCCATGTCCCAGACATGGTCTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
72322529 TTGAATCTCA
Statistics
Matches: 133, Mismatches: 27, Indels: 13
0.77 0.16 0.08
Matches are distributed among these distances:
45 1 0.01
46 58 0.44
47 60 0.45
48 14 0.11
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAGCCA
Found at i:72331950 original size:37 final size:37
Alignment explanation
Indices: 72331898--72331969 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
72331888 TTTAGCTCGA
*
72331898 ATAATCCCCACACGTAGTCATCGGGTCTTACCCGGGC
1 ATAATCCCCACACGTAGCCATCGGGTCTTACCCGGGC
* *
72331935 ATAATCTCCATACGTAGCCATCGGGTCTTACCCGG
1 ATAATCCCCACACGTAGCCATCGGGTCTTACCCGG
72331970 AATATATTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.22, C:0.33, G:0.21, T:0.24
Consensus pattern (37 bp):
ATAATCCCCACACGTAGCCATCGGGTCTTACCCGGGC
Found at i:72332163 original size:48 final size:48
Alignment explanation
Indices: 72332103--72332208 Score: 176
Period size: 48 Copynumber: 2.2 Consensus size: 48
72332093 CGGCCACAAT
* *
72332103 ATATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
72332151 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
* *
72332199 ACATATATAT
1 ATATACATAT
72332209 ATTTATCTTG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.34
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
Found at i:72335635 original size:28 final size:28
Alignment explanation
Indices: 72335604--72335683 Score: 90
Period size: 28 Copynumber: 2.8 Consensus size: 28
72335594 ACTGACCGAT
72335604 CTCGCACACATAGTGCTCGGTTGA-AGAA
1 CTCGCACACATAGTGCTCGGTT-ACAGAA
* ** * *
72335632 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTG-CTCGGTTACAGAA
72335661 CTCGCACACATAGTGCTCGGTTA
1 CTCGCACACATAGTGCTCGGTTA
72335684 ACGGAATTTG
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
28 21 0.50
29 21 0.50
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (28 bp):
CTCGCACACATAGTGCTCGGTTACAGAA
Found at i:72335923 original size:43 final size:43
Alignment explanation
Indices: 72335862--72335997 Score: 218
Period size: 43 Copynumber: 3.2 Consensus size: 43
72335852 CCTTGCTCGA
** *
72335862 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
* *
72335905 ATCACCGGTACGAAGCCTGCTAGGCACGAAGGCCCGGATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
72335948 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
72335991 ATCACCG
1 ATCACCG
72335998 AGTTTTATGC
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 85 1.00
ACGTcount: A:0.30, C:0.32, G:0.24, T:0.13
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
Found at i:72337918 original size:48 final size:48
Alignment explanation
Indices: 72337858--72337963 Score: 167
Period size: 48 Copynumber: 2.2 Consensus size: 48
72337848 CGGCCACAAT
* *
72337858 ATATACACATCTCATACATATTTCACATTAGCAATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCAATTCGGCTTTACCAC
*
72337906 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCAATTCGGCTTTACCAC
* *
72337954 ACATATATAT
1 ATATACATAT
72337964 ATTTATCTTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.34, C:0.26, G:0.06, T:0.34
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACACTAGCAATTCGGCTTTACCAC
Found at i:72341811 original size:17 final size:18
Alignment explanation
Indices: 72341766--72341813 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
72341756 CAGCAATTAC
72341766 TTAAT-TTTTAAAAAAAA
1 TTAATATTTTAAAAAAAA
* **
72341783 TTAAAAAATTAAAAAAAA
1 TTAATATTTTAAAAAAAA
72341801 -TAATATTTTAAAA
1 TTAATATTTTAAAA
72341814 TATTTTTATA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
17 14 0.58
18 10 0.42
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
TTAATATTTTAAAAAAAA
Found at i:72344425 original size:18 final size:19
Alignment explanation
Indices: 72344402--72344441 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
72344392 TGGAAACATC
*
72344402 ATAATAAATT-TAAGAGGG
1 ATAATAAATTATAAGAGAG
72344420 ATAATAAATTATAAGAGAG
1 ATAATAAATTATAAGAGAG
72344439 ATA
1 ATA
72344442 TGTAGAAAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.55, C:0.00, G:0.17, T:0.28
Consensus pattern (19 bp):
ATAATAAATTATAAGAGAG
Found at i:72348080 original size:14 final size:14
Alignment explanation
Indices: 72348049--72348086 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
72348039 TTCAACTAAT
72348049 ATAATA-ATAAACA
1 ATAATATATAAACA
72348062 ATAATATATAAA-A
1 ATAATATATAAACA
72348075 ATTAATATATAA
1 A-TAATATATAA
72348087 TGTACTATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 8 0.35
14 15 0.65
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (14 bp):
ATAATATATAAACA
Found at i:72348257 original size:227 final size:233
Alignment explanation
Indices: 72347960--72348566 Score: 699
Period size: 240 Copynumber: 2.5 Consensus size: 233
72347950 AATAAAAAGT
* * * * *
72347960 ATGATATGATATAACATTGTATAATATAGTAAGGGGCTAACTTTCAAATGTACAAAAAGTATAAG
1 ATGATATGATATAACATTATATAATATAGTAA-GTGTTAACTTTCAAATGTACGAAAAGTATAGG
*
72348025 GACTTAGAGCATATTTCAACTAATATAATAATAAACAATAATATATAAAAATTAATATATAATGT
65 GACTTAGAGCATATTTCAACTAATATAATAATAAACAATAATATATAAAAATTAATATATAATAT
* * *
72348090 ACT-ATTATTATATTATAGATTATAATAAAAGATATAGTATTACATGATATTATAATGTTTAATC
130 A-TAACTATTATATTATAGATTATAAAAAAAGATATAGTATTACATGATATTATAATGTTAAATC
72348154 ATTGATG-TATATATAAACTATTAATACATTATATACTAC
194 ATTGATGATATATATAAACTATTAATACATTATATACTAC
* * *
72348193 ATGATATGATATAGCATTATAT-A-ATA-T-AGT-TTAACATTCAAATGTATGAAAAGTATAGGG
1 ATGATATGATATAACATTATATAATATAGTAAGTGTTAACTTTCAAATGTACGAAAAGTATAGGG
* * * *
72348253 ACTTAAAACCTATTTCAACTAGTATAATAATAAACAATAATGTATAATAATTAATATGTAATTAA
66 ACTTAGAGCATATTTCAACTAATATAATAATAAACAATAA--TAT-ATAA--AA-AT-TAA-T-A
* *
72348318 CTATTATTATATATAACTATTATATTATATATTATAAAAAAAGATATAGTATTGCATGATATTAT
122 -TA-TA--ATATATAACTATTATATTATAGATTATAAAAAAAGATATAGTATTACATGATATTAT
* * * * *
72348383 AATGTTAAATTATTGATGAATATATATAAATTATTAATATATTGTATACTAT
183 AATGTTAAATCATTGATG-ATATATATAAACTATTAATACATTATATACTAC
*
72348435 ATGATATTATATAACATTATATAATATAGTACGAGTGTTAACTTTCAAATGTACGAATAA-TATA
1 ATGATATGATATAACATTATATAATATAGTA--AGTGTTAACTTTCAAATGTACGAA-AAGTATA
* * * *
72348499 GAGACTTAGAGCATATTTTTAACCACTATAATAATAAACAATAATATATGATAATAATTAATATA
63 GGGACTTAGAGCATA-TTTCAACTAATATAATAATAAACAATAATATAT-A-AA-AATTAATATA
72348564 TAA
124 TAA
72348567 CTGTTGTAGA
Statistics
Matches: 312, Mismatches: 34, Indels: 49
0.79 0.09 0.12
Matches are distributed among these distances:
227 61 0.20
228 1 0.00
229 4 0.01
230 5 0.02
231 3 0.01
232 3 0.01
233 22 0.07
234 3 0.01
235 1 0.00
236 1 0.00
237 2 0.01
238 2 0.01
239 1 0.00
240 67 0.21
242 50 0.16
243 3 0.01
244 4 0.01
245 2 0.01
246 3 0.01
247 5 0.02
248 8 0.03
249 34 0.11
250 27 0.09
ACGTcount: A:0.46, C:0.07, G:0.09, T:0.38
Consensus pattern (233 bp):
ATGATATGATATAACATTATATAATATAGTAAGTGTTAACTTTCAAATGTACGAAAAGTATAGGG
ACTTAGAGCATATTTCAACTAATATAATAATAAACAATAATATATAAAAATTAATATATAATATA
TAACTATTATATTATAGATTATAAAAAAAGATATAGTATTACATGATATTATAATGTTAAATCAT
TGATGATATATATAAACTATTAATACATTATATACTAC
Found at i:72349236 original size:21 final size:23
Alignment explanation
Indices: 72349187--72349237 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
72349177 GAAAAATAAT
72349187 TTTTTTTAAAAGAGAAATTTTAG
1 TTTTTTTAAAAGAGAAATTTTAG
** *
72349210 ACTTTTTAAAATA-AAA-TTTAG
1 TTTTTTTAAAAGAGAAATTTTAG
72349231 TTTTTTT
1 TTTTTTT
72349238 GTCGTTTTAA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
21 10 0.43
22 3 0.13
23 10 0.43
ACGTcount: A:0.37, C:0.02, G:0.08, T:0.53
Consensus pattern (23 bp):
TTTTTTTAAAAGAGAAATTTTAG
Found at i:72349237 original size:22 final size:24
Alignment explanation
Indices: 72349186--72349237 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 24
72349176 AGAAAAATAA
72349186 TTTTTTTTAAAAGAGAAATTTTAG
1 TTTTTTTTAAAAGAGAAATTTTAG
** *
72349210 -ACTTTTTAAAATA-AAA-TTTAG
1 TTTTTTTTAAAAGAGAAATTTTAG
72349231 TTTTTTT
1 TTTTTTT
72349238 GTCGTTTTAA
Statistics
Matches: 22, Mismatches: 5, Indels: 4
0.71 0.16 0.13
Matches are distributed among these distances:
21 5 0.23
22 7 0.32
23 10 0.45
ACGTcount: A:0.37, C:0.02, G:0.08, T:0.54
Consensus pattern (24 bp):
TTTTTTTTAAAAGAGAAATTTTAG
Found at i:72349352 original size:144 final size:145
Alignment explanation
Indices: 72349051--72349324 Score: 396
Period size: 144 Copynumber: 1.9 Consensus size: 145
72349041 TTTTTAAAAA
* *
72349051 AAAAGAG-AAGTTTA-AATTTTTAAAATAAAAATCTATTTTTTAGTCATTTTAAAAGAAAAGTTT
1 AAAAGAGAAATTTTAGACTTTTTAAAATAAAAATCTATTTTTTAGTCATTTTAAAAGAAAAGTTT
* *
72349114 AAATTTTTTAAAATAAAGTATTGATCTTTTTCAACTATTTCGAAATAAACCTTTGAATTTTAAGA
66 AAATTTTTTAAAACAAAATATTGATCTTTTTCAACTATTTCGAAATAAACCTTTGAATTTTAAGA
72349179 AAAATAATTTTTTTT
131 AAAATAATTTTTTTT
* * * *
72349194 AAAAGAGAAATTTTAGACTTTTTAAAAT-AAAATTTAGTTTTTTTGTCGTTTTAAAGGAAAAGTT
1 AAAAGAGAAATTTTAGACTTTTTAAAATAAAAATCTA-TTTTTTAGTCATTTTAAAAGAAAAGTT
* * * *
72349258 TAAA-TTTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCGAAA-AAAGCTTTGATTTTTAGG
65 TAAATTTTTTAAAACAAAATATTGATCTTTTTCAACTATTTCGAAATAAACCTTTGAATTTTAAG
72349321 AAAA
130 AAAA
72349325 TTAGTGATTT
Statistics
Matches: 116, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
143 26 0.22
144 51 0.44
145 39 0.34
ACGTcount: A:0.42, C:0.06, G:0.09, T:0.43
Consensus pattern (145 bp):
AAAAGAGAAATTTTAGACTTTTTAAAATAAAAATCTATTTTTTAGTCATTTTAAAAGAAAAGTTT
AAATTTTTTAAAACAAAATATTGATCTTTTTCAACTATTTCGAAATAAACCTTTGAATTTTAAGA
AAAATAATTTTTTTT
Found at i:72350290 original size:27 final size:27
Alignment explanation
Indices: 72350236--72350297 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
72350226 TAGTTAAGTG
* **
72350236 TTACATTTTAATGAAACTATAATTTTT
1 TTACATTTTAATGAAACCATAAGGTTT
72350263 TTACATTTTAATGAAACCATAAGGTTT
1 TTACATTTTAATGAAACCATAAGGTTT
*
72350290 TTATATTT
1 TTACATTT
72350298 GGATTTAGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.50
Consensus pattern (27 bp):
TTACATTTTAATGAAACCATAAGGTTT
Found at i:72357153 original size:30 final size:30
Alignment explanation
Indices: 72357117--72357178 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
72357107 CAAGTAGCCG
72357117 AAGCTAGTTTAAATCGCACACTTACTGCCA
1 AAGCTAGTTTAAATCGCACACTTACTGCCA
* *
72357147 AAGCTAGTTTAAATTGCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTACTGCCA
72357177 AA
1 AA
72357179 ACTTTCGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (30 bp):
AAGCTAGTTTAAATCGCACACTTACTGCCA
Found at i:72365444 original size:24 final size:24
Alignment explanation
Indices: 72365413--72365470 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
72365403 GCTGATGAAC
72365413 AGTAAGCTC-GATCGAGCTAAAAAT
1 AGTAAGCTCTGAT-GAGCTAAAAAT
* * *
72365437 AGTAAGCTCTGATGAGTTGAGAAT
1 AGTAAGCTCTGATGAGCTAAAAAT
72365461 AGTAAGCTCT
1 AGTAAGCTCT
72365471 TACGAGCTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 27 0.90
25 3 0.10
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (24 bp):
AGTAAGCTCTGATGAGCTAAAAAT
Found at i:72366820 original size:16 final size:16
Alignment explanation
Indices: 72366799--72366853 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
72366789 GGATTTAGCC
72366799 TTTAGTTCAGACGGGA
1 TTTAGTTCAGACGGGA
* *
72366815 TTTAGTTCAGATGAGA
1 TTTAGTTCAGACGGGA
*
72366831 TTTA-TCTCGGACGGGA
1 TTTAGT-TCAGACGGGA
*
72366847 CTTAGTT
1 TTTAGTT
72366854 TTTCAATTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
15 1 0.03
16 29 0.94
17 1 0.03
ACGTcount: A:0.24, C:0.13, G:0.27, T:0.36
Consensus pattern (16 bp):
TTTAGTTCAGACGGGA
Found at i:72367883 original size:17 final size:18
Alignment explanation
Indices: 72367856--72367895 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
72367846 CTTTCTCAAT
72367856 TGGGTCATGTGGGCCACA
1 TGGGTCATGTGGGCCACA
*
72367874 TGGG-CATGTGGTCCACA
1 TGGGTCATGTGGGCCACA
*
72367891 CGGGT
1 TGGGT
72367896 GAACCACACA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.15, C:0.23, G:0.40, T:0.23
Consensus pattern (18 bp):
TGGGTCATGTGGGCCACA
Found at i:72374153 original size:21 final size:22
Alignment explanation
Indices: 72374117--72374159 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
72374107 AAAATTAATC
72374117 AATTAAACTTTAATTAACCAAA
1 AATTAAACTTTAATTAACCAAA
* *
72374139 AATTAATC-TTAATTAGCCAAA
1 AATTAAACTTTAATTAACCAAA
72374160 GTTAGTGAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.51, C:0.14, G:0.02, T:0.33
Consensus pattern (22 bp):
AATTAAACTTTAATTAACCAAA
Found at i:72376230 original size:28 final size:28
Alignment explanation
Indices: 72376193--72376268 Score: 116
Period size: 28 Copynumber: 2.7 Consensus size: 28
72376183 TCATTCGATC
*
72376193 TTTCCCACACTAAGTGCCATTCTCAATA
1 TTTCGCACACTAAGTGCCATTCTCAATA
* * *
72376221 TTTTGCACACTATGTGTCATTCTCAATA
1 TTTCGCACACTAAGTGCCATTCTCAATA
72376249 TTTCGCACACTAAGTGCCAT
1 TTTCGCACACTAAGTGCCAT
72376269 ATTTGATGTC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.36
Consensus pattern (28 bp):
TTTCGCACACTAAGTGCCATTCTCAATA
Found at i:72376349 original size:40 final size:40
Alignment explanation
Indices: 72376305--72376383 Score: 99
Period size: 40 Copynumber: 2.0 Consensus size: 40
72376295 GTACATAGCT
72376305 GAAGCTAT-CTCAAA-TCGCACACTAAGTGCCAAATTTAGTC
1 GAAGCTATAC-CAAACT-GCACACTAAGTGCCAAATTTAGTC
* * *
72376345 GAAGCTATACCGAACTGCACACTAAGTGTCATATTTAGT
1 GAAGCTATACCAAACTGCACACTAAGTGCCAAATTTAGT
72376384 TGATATGTCT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
40 32 0.94
41 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (40 bp):
GAAGCTATACCAAACTGCACACTAAGTGCCAAATTTAGTC
Found at i:72379937 original size:8 final size:8
Alignment explanation
Indices: 72379924--72379950 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
72379914 ACAACGGGAA
72379924 AATTTTTG
1 AATTTTTG
72379932 AATTTTTG
1 AATTTTTG
72379940 AATTTTTG
1 AATTTTTG
72379948 AAT
1 AAT
72379951 CCTCTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (8 bp):
AATTTTTG
Found at i:72382579 original size:36 final size:36
Alignment explanation
Indices: 72382509--72382581 Score: 87
Period size: 36 Copynumber: 2.0 Consensus size: 36
72382499 AGTAATTTAT
* *
72382509 GGAGTGTATTATGGAGAGATATTAGGATAAAATCAA
1 GGAGTGTATTATGGAGAGAAATTAGGAGAAAATCAA
*
72382545 GGAGTG-ATTTATGGAGA-AAATTAAGGAGAGAATCAA
1 GGAGTGTA-TTATGGAGAGAAATT-AGGAGAAAATCAA
72382581 G
1 G
72382582 AATTTGGTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
35 5 0.16
36 27 0.84
ACGTcount: A:0.42, C:0.03, G:0.30, T:0.25
Consensus pattern (36 bp):
GGAGTGTATTATGGAGAGAAATTAGGAGAAAATCAA
Found at i:72385629 original size:27 final size:27
Alignment explanation
Indices: 72385570--72385629 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
72385560 AAACGAGATA
** *
72385570 GGCCCAAATGATTCTATTATGGGTTGT
1 GGCCCAAATGATAATATAATGGGTTGT
*
72385597 GACCCAAATGATAATATAATGGGCTT-T
1 GGCCCAAATGATAATATAATGGG-TTGT
72385624 GGCCCA
1 GGCCCA
72385630 CTTATGCTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (27 bp):
GGCCCAAATGATAATATAATGGGTTGT
Found at i:72388315 original size:46 final size:46
Alignment explanation
Indices: 72388248--72388414 Score: 189
Period size: 46 Copynumber: 3.6 Consensus size: 46
72388238 TGTAACCCGC
*
72388248 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
* *
72388294 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTTGCAT
* * * *
72388344 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
*
72388387 CTATAAGTGAACTCGGACTCAACTCAAC
1 CCATAAGTGAACTCGGACTCAACTCAAC
72388415 TAGTTCGGAT
Statistics
Matches: 101, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
43 7 0.07
44 1 0.01
46 56 0.55
47 27 0.27
48 1 0.01
49 1 0.01
50 7 0.07
51 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
Found at i:72388362 original size:93 final size:93
Alignment explanation
Indices: 72388256--72388426 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
72388246 GCCCATAAGT
* * *
72388256 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72388321 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
72388349 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCTATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
72388414 CTAGTTCGGATGC
66 CGAGCTCGGATGC
72388427 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:72388442 original size:46 final size:45
Alignment explanation
Indices: 72388253--72388442 Score: 117
Period size: 46 Copynumber: 4.1 Consensus size: 45
72388243 CCCGCCCATA
* ****
72388253 AGTGAACTCGGACTCAACTCAACGAGCTCGG--GCGTTTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCC-T
*
72388298 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATC-CT
* * *
72388348 --CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCTAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AC-CATC-CT
*
72388391 AAGTGAACTCGGACTCAACTCAACTAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCCT
72388438 AGTGA
1 AGTGA
72388443 CATGTCACTT
Statistics
Matches: 117, Mismatches: 11, Indels: 32
0.73 0.07 0.20
Matches are distributed among these distances:
41 1 0.01
43 7 0.06
44 1 0.01
46 64 0.55
47 29 0.25
48 6 0.05
49 1 0.01
50 7 0.06
51 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCT
Found at i:72390954 original size:23 final size:20
Alignment explanation
Indices: 72390905--72390955 Score: 50
Period size: 23 Copynumber: 2.4 Consensus size: 20
72390895 GACTGTGATC
72390905 ATATGATTGTGTTCTAACTG
1 ATATGATTGTGTTCTAACTG
*
72390925 ACT-TGATTGTGGTTGTACAACTG
1 A-TATGATTGT-GTTCT--AACTG
72390948 ATATGATT
1 ATATGATT
72390956 TTAATATATG
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
20 8 0.32
21 5 0.20
22 1 0.04
23 11 0.44
ACGTcount: A:0.25, C:0.10, G:0.22, T:0.43
Consensus pattern (20 bp):
ATATGATTGTGTTCTAACTG
Found at i:72391295 original size:25 final size:27
Alignment explanation
Indices: 72391249--72391300 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
72391239 TTGAAGATTC
* *
72391249 TGTGTCGATCATATTTACCCATGGCTG
1 TGTGCCGATCATATTTACCCATCGCTG
*
72391276 TGTGCCGATTATA-TTA-CCATCGCTG
1 TGTGCCGATCATATTTACCCATCGCTG
72391301 ATGGCTATGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 8 0.36
26 3 0.14
27 11 0.50
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (27 bp):
TGTGCCGATCATATTTACCCATCGCTG
Found at i:72393298 original size:31 final size:31
Alignment explanation
Indices: 72393261--72393322 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
72393251 TTAAAGATAG
72393261 AGCAGAGAGCTTTGTGTCATAAAATCAATTA
1 AGCAGAGAGCTTTGTGTCATAAAATCAATTA
72393292 AGCAGAGAGCTTTGTGTCATAAAATCAATTA
1 AGCAGAGAGCTTTGTGTCATAAAATCAATTA
72393323 TGATTTCATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.29
Consensus pattern (31 bp):
AGCAGAGAGCTTTGTGTCATAAAATCAATTA
Found at i:72393955 original size:2 final size:2
Alignment explanation
Indices: 72393948--72393976 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
72393938 ATTTGAAAAC
72393948 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
72393977 AATGGGGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:72394065 original size:14 final size:14
Alignment explanation
Indices: 72394046--72394076 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
72394036 AAAAGGTTAA
72394046 AGAAAGAGAGAGAG
1 AGAAAGAGAGAGAG
72394060 AGAAAGAGAGAGAG
1 AGAAAGAGAGAGAG
72394074 AGA
1 AGA
72394077 GATGGTGAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (14 bp):
AGAAAGAGAGAGAG
Found at i:72395947 original size:11 final size:11
Alignment explanation
Indices: 72395920--72395949 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
72395910 TGAAATTTTC
*
72395920 TCAAAATTCTA
1 TCAAATTTCTA
72395931 TCAAATTTCTA
1 TCAAATTTCTA
72395942 TCAAATTT
1 TCAAATTT
72395950 GTTTGTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.43
Consensus pattern (11 bp):
TCAAATTTCTA
Found at i:72395948 original size:32 final size:32
Alignment explanation
Indices: 72395888--72395949 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
72395878 AATATTCCCT
* *
72395888 TCAAAAATCTATCGAATTTCATTGAAATTTTC
1 TCAAAAATCTATCAAATTTCATTCAAATTTTC
*
72395920 TCAAAATTCTATCAAATTTC-TATCAAATTT
1 TCAAAAATCTATCAAATTTCAT-TCAAATTT
72395950 GTTTGTTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 1 0.04
32 25 0.96
ACGTcount: A:0.39, C:0.16, G:0.03, T:0.42
Consensus pattern (32 bp):
TCAAAAATCTATCAAATTTCATTCAAATTTTC
Found at i:72396149 original size:48 final size:48
Alignment explanation
Indices: 72396085--72396183 Score: 139
Period size: 48 Copynumber: 2.1 Consensus size: 48
72396075 AGTGATAATT
*
72396085 TTAAATTTTCAATACTATTCGATATTTT-TTTAATTTATGCAAATT-TAA
1 TTAAATTTGCAATACTATTCGATATTTTATTT-ATTTATGC-AATTATAA
* *
72396133 TTAAATTTGCAATACTATTTGGTATTTTATTTATTTATGCAATTATAA
1 TTAAATTTGCAATACTATTCGATATTTTATTTATTTATGCAATTATAA
72396181 TTA
1 TTA
72396184 CAATGTCAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
47 4 0.09
48 39 0.85
49 3 0.07
ACGTcount: A:0.34, C:0.07, G:0.06, T:0.53
Consensus pattern (48 bp):
TTAAATTTGCAATACTATTCGATATTTTATTTATTTATGCAATTATAA
Found at i:72397829 original size:18 final size:18
Alignment explanation
Indices: 72397806--72397848 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
72397796 TGCTAGGTGC
72397806 GTATCCTAGCCCTTATAT
1 GTATCCTAGCCCTTATAT
*
72397824 GTATCCTAGCTCTTATAT
1 GTATCCTAGCCCTTATAT
*
72397842 GTTTCCT
1 GTATCCT
72397849 TTTCTTAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.19, C:0.26, G:0.12, T:0.44
Consensus pattern (18 bp):
GTATCCTAGCCCTTATAT
Found at i:72401114 original size:126 final size:126
Alignment explanation
Indices: 72400951--72401458 Score: 712
Period size: 126 Copynumber: 4.0 Consensus size: 126
72400941 TTATAGCCTC
* * * *
72400951 ATTTTTCTACGAAGTACTGTAGCAAAAGAGAGTCCACGTGGGAGCTTTTTTCTGAAATTTTGCTG
1 ATTTTTCTACGAACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCTGAAATTTTACTG
* * * *
72401016 ATAGTGCATTCTGCTTAAAGTGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* * *
72401077 ATTTTTCTACGAACTACTATAGCAAAAGAGCGTCCACGTGGAAGCTCTTTTCTGAAATTTTGCTG
1 ATTTTTCTACGAACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCTGAAATTTTACTG
* * **
72401142 ACAGTGCATCTTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAATGTCTACTCATTATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* * ** * **
72401203 ATTTTTCTATGAACTACTATAGCAAAAGAGCGTTCACGTAAGAGCTTTTTCCAAAAATTTTACTG
1 ATTTTTCTACGAACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCTGAAATTTTACTG
* *
72401268 ACAGTGCATCCTGCTTGAAGTGTTTTCGACACTATTTGTTCAGAAACATCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* * **
72401329 ATTTTTCTACGAACTACTGTAGTAAAAGAGCGTCCATATGGGAGC-TTTTTCTAGAAATTTTACT
1 ATTTTTCTACGAACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCT-GAAATTTTACT
* * *
72401393 GACAATGCATCCTGCTTGAAGCGTTTTTCAATACTATTTGTTCAGAAACGTCTACTCAGAATT
65 GACAGTGCATCCTGCTTGAAGCG-TTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
72401456 ATT
1 ATT
72401459 CTTGCAAAAA
Statistics
Matches: 335, Mismatches: 45, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
125 5 0.01
126 291 0.87
127 39 0.12
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.36
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCTGAAATTTTACTG
ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
Found at i:72402004 original size:20 final size:20
Alignment explanation
Indices: 72401979--72402048 Score: 76
Period size: 20 Copynumber: 3.6 Consensus size: 20
72401969 ACCATTATGT
72401979 ATCAATTAACCCTAAATTTA
1 ATCAATTAACCCTAAATTTA
* *
72401999 ATCAATTAACCCTAAACCCTAA
1 ATCAATTAACCCTAAA--TTTA
72402021 ATCAA-T--CCCT-AATTTA
1 ATCAATTAACCCTAAATTTA
72402037 ATCAATTAACCC
1 ATCAATTAACCC
72402049 CAATACCCTA
Statistics
Matches: 41, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
16 7 0.17
17 1 0.02
18 2 0.05
19 7 0.17
20 16 0.39
21 1 0.02
22 7 0.17
ACGTcount: A:0.43, C:0.27, G:0.00, T:0.30
Consensus pattern (20 bp):
ATCAATTAACCCTAAATTTA
Found at i:72402072 original size:34 final size:36
Alignment explanation
Indices: 72401993--72402072 Score: 103
Period size: 38 Copynumber: 2.2 Consensus size: 36
72401983 ATTAACCCTA
*
72401993 AATTTAATCAATTAACCCTAAACCCTAAATCAATCCCT
1 AATTTAATCAATTAACCCCAAACCCTAAATC-AT-CCT
72402031 AATTTAATCAATTAACCCCAATACCCTAAA-C-T-CT
1 AATTTAATCAATTAACCCCAA-ACCCTAAATCATCCT
72402065 AATTTAAT
1 AATTTAAT
72402073 ATTTAGTATT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
34 10 0.25
36 1 0.03
38 21 0.52
39 8 0.20
ACGTcount: A:0.42, C:0.26, G:0.00, T:0.31
Consensus pattern (36 bp):
AATTTAATCAATTAACCCCAAACCCTAAATCATCCT
Found at i:72413004 original size:30 final size:28
Alignment explanation
Indices: 72412970--72413041 Score: 81
Period size: 30 Copynumber: 2.5 Consensus size: 28
72412960 CATTATGTAC
*
72412970 TTAATGTAAAATTTGTTTTTCATAATATAA
1 TTAATATAAAATTT-TTTTTCATAA-ATAA
* * *
72413000 TTAATATAAACATATTTTTTCGTTAATAA
1 TTAATATAAA-ATTTTTTTTCATAAATAA
72413029 TTAATATAAAATT
1 TTAATATAAAATT
72413042 ACTTCCCATT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
28 2 0.06
29 14 0.39
30 17 0.47
31 3 0.08
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (28 bp):
TTAATATAAAATTTTTTTTCATAAATAA
Found at i:72415923 original size:51 final size:51
Alignment explanation
Indices: 72415837--72415948 Score: 170
Period size: 51 Copynumber: 2.2 Consensus size: 51
72415827 TGAGTACTTC
* * *
72415837 TGATCAGTGACAGGTGATAAGTGGTAGCCTCAGCTACACTTATCTGGTCAG
1 TGATAAGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAG
* *
72415888 TGATAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAG
1 TGATAAGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAG
*
72415939 TGACAAGTGA
1 TGATAAGTGA
72415949 TAAATGTGAT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (51 bp):
TGATAAGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAG
Found at i:72422598 original size:51 final size:51
Alignment explanation
Indices: 72422512--72422623 Score: 188
Period size: 51 Copynumber: 2.2 Consensus size: 51
72422502 TGAGTACTTC
*
72422512 TGATCAGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAG
1 TGATAAGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAG
* *
72422563 TGATAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAG
1 TGATAAGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAG
*
72422614 TGACAAGTGA
1 TGATAAGTGA
72422624 TAAATGTGAT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (51 bp):
TGATAAGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAG
Found at i:72438271 original size:41 final size:41
Alignment explanation
Indices: 72438214--72438295 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
72438204 ATGGATGTTT
72438214 TGTTGATTGTGCCTTGTATTTGATCTGTTTGAATAAAATTC
1 TGTTGATTGTGCCTTGTATTTGATCTGTTTGAATAAAATTC
72438255 TGTTGATTGTGCCTTGTATTTGATCTGTTTGAATAAAATTC
1 TGTTGATTGTGCCTTGTATTTGATCTGTTTGAATAAAATTC
72438296 CAACATATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.22, C:0.10, G:0.20, T:0.49
Consensus pattern (41 bp):
TGTTGATTGTGCCTTGTATTTGATCTGTTTGAATAAAATTC
Found at i:72441781 original size:22 final size:22
Alignment explanation
Indices: 72441755--72441798 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
72441745 CAATTATATC
**
72441755 AATTTTTAATAGTAAAATAAAT
1 AATTTTTAATAAAAAAATAAAT
72441777 AATTTTTAATAAAAAAATAAAT
1 AATTTTTAATAAAAAAATAAAT
72441799 TTCACTTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (22 bp):
AATTTTTAATAAAAAAATAAAT
Found at i:72441844 original size:16 final size:19
Alignment explanation
Indices: 72441809--72441845 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
72441799 TTCACTTTGA
72441809 TTTAATATATAAAAACTAG
1 TTTAATATATAAAAACTAG
72441828 TTTAATA-A-AAAAA-TAG
1 TTTAATATATAAAAACTAG
72441844 TT
1 TT
72441846 ATGATGTATC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 5 0.28
17 5 0.28
18 1 0.06
19 7 0.39
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (19 bp):
TTTAATATATAAAAACTAG
Found at i:72442818 original size:21 final size:21
Alignment explanation
Indices: 72442789--72442836 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
72442779 ATATTACTAT
*
72442789 AAATATTAT-TTATATTTATG
1 AAATTTTATATTATATTTATG
*
72442809 ATAATTTTATATTATATTTTTG
1 A-AATTTTATATTATATTTATG
72442831 AAATTT
1 AAATTT
72442837 GAAATTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.04
21 12 0.50
22 11 0.46
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (21 bp):
AAATTTTATATTATATTTATG
Found at i:72448809 original size:46 final size:46
Alignment explanation
Indices: 72448757--72448925 Score: 159
Period size: 46 Copynumber: 3.6 Consensus size: 46
72448747 TTTGTATGCT
72448757 AGTGTAAGACATGTCTGAGACATGCATCGGCTATATTATGAGAGCC
1 AGTGTAAGACATGTCTGAGACATGCATCGGCTATATTATGAGAGCC
* * * *
72448803 AGTGTAAGACCATGTCTGGGACATGGAATCGGC-AT-TGATACGAGAGCT
1 AGTGTAAGA-CATGTCTGAGACAT-GCATCGGCTATAT--TATGAGAGCC
* ** *
72448851 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTA-AGCC
1 AGTGTAAGACATGTCTGAGACATGCATCGG-CTATATTATG-AGAGCC
*
72448897 AGTGTAAGACATGTCT-AGGACATCCATCG
1 AGTGTAAGACATGTCTGA-GACATGCATCG
72448926 ACTACGAGAT
Statistics
Matches: 102, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
46 47 0.46
47 31 0.30
48 24 0.24
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGAGACATGCATCGGCTATATTATGAGAGCC
Found at i:72448934 original size:46 final size:43
Alignment explanation
Indices: 72448757--72448973 Score: 141
Period size: 46 Copynumber: 4.7 Consensus size: 43
72448747 TTTGTATGCT
* ** *
72448757 AGTGTAAGACATGTCT-GAGACATGCATCGGCTATATTATGAGAGCC
1 AGTGTAAGACATGTCTAG-GACATGCATCGACTCGA-GAT--GAGCC
* * * * *
72448803 AGTGTAAGACCATGTCTGGGACATGGAATCGGCATTGATACGA-GAGCT
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGAC-TCG--A-GATGAGCC
* *
72448851 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTAGGACATGCATC-GACTCGAGATG--AGCC
* * **
72448897 AGTGTAAGACATGTCTAGGACATCCATCGACTACGAGATGCGTT
1 AGTGTAAGACATGTCTAGGACATGCATCGACT-CGAGATGAGCC
72448941 AGTGTAAGACCATGTCTAGGACATGGCATCGAC
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGAC
72448974 AAGGATATGT
Statistics
Matches: 141, Mismatches: 17, Indels: 26
0.77 0.09 0.14
Matches are distributed among these distances:
43 2 0.01
44 12 0.09
45 17 0.12
46 58 0.41
47 28 0.20
48 21 0.15
49 1 0.01
51 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (43 bp):
AGTGTAAGACATGTCTAGGACATGCATCGACTCGAGATGAGCC
Found at i:72454003 original size:46 final size:45
Alignment explanation
Indices: 72453854--72454020 Score: 176
Period size: 46 Copynumber: 3.6 Consensus size: 45
72453844 TTTGTGTACT
* *
72453854 AGTGTAAGACATGTCTTGGACATGCATCGG-CTGCATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTG-A-GATGAGAGCC
* * * * *
72453900 AGTGTAAGACCATGTCTGGGATATGGCATTGGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTGAGATGAGAGCC
*
72453948 AGTGTAAGACATGTCCGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-GAGATG-AGAGCC
*
72453994 AGTGTAAGACATGTCTGGGATATGCAT
1 AGTGTAAGACATGTCTGGGACATGCAT
72454021 TGACTACGAG
Statistics
Matches: 100, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
45 1 0.01
46 49 0.49
47 25 0.25
48 22 0.22
49 1 0.01
50 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTGAGATGAGAGCC
Found at i:72454031 original size:46 final size:46
Alignment explanation
Indices: 72453896--72454047 Score: 143
Period size: 46 Copynumber: 3.3 Consensus size: 46
72453886 GCATTATGAG
* * *
72453896 AGCCAGTGTAAGACCATGTCTGGGATATGGCATTGGC-ATTGAGACG-A
1 AGCCAGTGTAAGA-CATGTCTGGGATAT-GCATTGACTA-CGAGATGTA
* * * * *
72453943 GAGCTAGTGTAAGACATGTCCGGGACATGCATCGGCCT-CGAGATGTA
1 -AGCCAGTGTAAGACATGTCTGGGATATGCAT-TGACTACGAGATGTA
72453990 AGCCAGTGTAAGACATGTCTGGGATATGCATTGACTACGAGATGT-
1 AGCCAGTGTAAGACATGTCTGGGATATGCATTGACTACGAGATGTA
*
72454035 -GTCAGTGTAAGAC
1 AGCCAGTGTAAGAC
72454048 CATATTTGAG
Statistics
Matches: 87, Mismatches: 13, Indels: 12
0.78 0.12 0.11
Matches are distributed among these distances:
44 12 0.14
45 3 0.03
46 45 0.52
47 15 0.17
48 12 0.14
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.24
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGATATGCATTGACTACGAGATGTA
Found at i:72456161 original size:30 final size:31
Alignment explanation
Indices: 72456125--72456188 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
72456115 CAATACGATT
72456125 TATTGAGTA-CTTTTAAGAATTATGGTATTA
1 TATTGAGTAGCTTTTAAGAATTATGGTATTA
72456155 TATTGAGTAGCTTTTAAGAATTATGGTATTA
1 TATTGAGTAGCTTTTAAGAATTATGGTATTA
72456186 TAT
1 TAT
72456189 GTATTCCTCC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 9 0.27
31 24 0.73
ACGTcount: A:0.33, C:0.03, G:0.17, T:0.47
Consensus pattern (31 bp):
TATTGAGTAGCTTTTAAGAATTATGGTATTA
Found at i:72457556 original size:21 final size:21
Alignment explanation
Indices: 72457531--72457572 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
72457521 TTAATTTTCT
72457531 TATATCTTTGAAGCCTTATAA
1 TATATCTTTGAAGCCTTATAA
72457552 TATATCTTTGAAGCCTTATAA
1 TATATCTTTGAAGCCTTATAA
72457573 AGAAAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.14, G:0.10, T:0.43
Consensus pattern (21 bp):
TATATCTTTGAAGCCTTATAA
Found at i:72460673 original size:77 final size:76
Alignment explanation
Indices: 72460509--72460851 Score: 530
Period size: 76 Copynumber: 4.5 Consensus size: 76
72460499 ATAAAGATGA
* * *
72460509 TTAAAACCTTAAAATATCTTTAAGAAATTAAGTAATTTCTACATCTGGAAAAAATACTTAATTTA
1 TTAAAACCTTAAAGTGTGTTTAAGAAATTAAGTAATTTCTACATCTGGAAAAAATACTTAATTTA
72460574 TGAAGGGTTAC
66 TGAAGGGTTAC
72460585 TTAAAACCTTAAAGTGTGTTTAAGAAATTAAGTAATTTCTACATCTGGAAAAAAATACTTAATTT
1 TTAAAACCTTAAAGTGTGTTTAAGAAATTAAGTAATTTCTACATCTGG-AAAAAATACTTAATTT
72460650 ATGAAGGGTTAC
65 ATGAAGGGTTAC
*
72460662 TTAAAACCTTAAAGTGTGTTTAAGAAATTAAGTAATTTCTATATCTGGAAAAAATACTTAATTTA
1 TTAAAACCTTAAAGTGTGTTTAAGAAATTAAGTAATTTCTACATCTGGAAAAAATACTTAATTTA
72460727 TGAAGGGTTAC
66 TGAAGGGTTAC
* *
72460738 TTAAAACCTTAAAGTGTGTTTAAGAAATTAAGTAA-TTCTTAAATCATGGGAAAAATACTTAATT
1 TTAAAACCTTAAAGTGTGTTTAAGAAATTAAGTAATTTC-TACATC-TGGAAAAAATACTTAATT
* * *
72460802 TATTAAAGGTCAC
64 TATGAAGGGTTAC
* * *
72460815 -TAAAACTTTAAAGAGT-TTTAAGGAATTAAGTAATTTC
1 TTAAAACCTTAAAGTGTGTTTAAGAAATTAAGTAATTTC
72460852 CTAAACCAAG
Statistics
Matches: 251, Mismatches: 12, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
75 19 0.08
76 130 0.52
77 102 0.41
ACGTcount: A:0.42, C:0.09, G:0.13, T:0.36
Consensus pattern (76 bp):
TTAAAACCTTAAAGTGTGTTTAAGAAATTAAGTAATTTCTACATCTGGAAAAAATACTTAATTTA
TGAAGGGTTAC
Found at i:72460688 original size:153 final size:152
Alignment explanation
Indices: 72460509--72460851 Score: 530
Period size: 153 Copynumber: 2.2 Consensus size: 152
72460499 ATAAAGATGA
* *
72460509 TTAAAACCTTAAAATATCTTTAAGAAATTAAGTAATTTCTACATCTGGAAAAAATACTTAATTTA
1 TTAAAACCTTAAAGTGT-TTTAAGAAATTAAGTAATTTCTACATCTGGAAAAAATACTTAATTTA
*
72460574 TGAAGGGTTACTTAAAACCTTAAAGTGTGTTTAAGAAATTAAGTAATT-TCTACATC-TGGAAAA
65 TGAAGGGTTACTTAAAACCTTAAAGTGTGTTTAAGAAATTAAGTAATTCT-TAAATCATGG-AAA
* *
72460637 AAATACTTAATTTATGAAGGGTTAC
128 AAATACTTAATTTATGAAAGGTCAC
*
72460662 TTAAAACCTTAAAGTGTGTTTAAGAAATTAAGTAATTTCTATATCTGGAAAAAATACTTAATTTA
1 TTAAAACCTTAAAGTGT-TTTAAGAAATTAAGTAATTTCTACATCTGGAAAAAATACTTAATTTA
*
72460727 TGAAGGGTTACTTAAAACCTTAAAGTGTGTTTAAGAAATTAAGTAATTCTTAAATCATGGGAAAA
65 TGAAGGGTTACTTAAAACCTTAAAGTGTGTTTAAGAAATTAAGTAATTCTTAAATCATGGAAAAA
*
72460792 ATACTTAATTTATTAAAGGTCAC
130 ATACTTAATTTATGAAAGGTCAC
* * *
72460815 -TAAAACTTTAAAGAGTTTTAAGGAATTAAGTAATTTC
1 TTAAAACCTTAAAGTGTTTTAAGAAATTAAGTAATTTC
72460852 CTAAACCAAG
Statistics
Matches: 176, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
151 20 0.11
152 14 0.08
153 138 0.78
154 4 0.02
ACGTcount: A:0.42, C:0.09, G:0.13, T:0.36
Consensus pattern (152 bp):
TTAAAACCTTAAAGTGTTTTAAGAAATTAAGTAATTTCTACATCTGGAAAAAATACTTAATTTAT
GAAGGGTTACTTAAAACCTTAAAGTGTGTTTAAGAAATTAAGTAATTCTTAAATCATGGAAAAAA
TACTTAATTTATGAAAGGTCAC
Found at i:72461085 original size:173 final size:172
Alignment explanation
Indices: 72460796--72461142 Score: 631
Period size: 173 Copynumber: 2.0 Consensus size: 172
72460786 GGAAAAATAC
72460796 TTAATTTATTAAAGGTCACTAAAACTTTAAAGAGTTTTAAGGAATTAAGTAATTTCCTAAACCAA
1 TTAATTTATTAAAGGTCACTAAAACTTTAAAGAGTTTTAAGGAATTAAGTAATTTCCTAAACCAA
*
72460861 GAAAAAACTACACTAAGAGTTACTTAAATCCTTAATGGCACTTTAAGAAATTAAGAAATTCCTAA
66 GAAAAAAATACACTAAGAGTTACTTAAATCCTTAATGGCACTTTAAGAAATTAAGAAATTCCTAA
72460926 AGCATGAGAAAATTATTGATAACATGTTAAATCTGCATGATTT
131 AGCATGAG-AAATTATTGATAACATGTTAAATCTGCATGATTT
*
72460969 TTAATTTATTAAAGTTCACTAAAACTTTAAAGAGTTTTAAGGAATTAAGTAATTTCCTAAACCAA
1 TTAATTTATTAAAGGTCACTAAAACTTTAAAGAGTTTTAAGGAATTAAGTAATTTCCTAAACCAA
*
72461034 GAAAAAAATACTCTAAGAGTTACTTAAATCCTTAATGGCACTTTAAGAAATTAAGAAATTCCTAA
66 GAAAAAAATACACTAAGAGTTACTTAAATCCTTAATGGCACTTTAAGAAATTAAGAAATTCCTAA
* * *
72461099 ATCATGAGAAATTATTGATAACATGTTAAATTTGCATTATTT
131 AGCATGAGAAATTATTGATAACATGTTAAATCTGCATGATTT
72461141 TT
1 TT
72461143 TTTCTATTTA
Statistics
Matches: 168, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
172 34 0.20
173 134 0.80
ACGTcount: A:0.43, C:0.12, G:0.11, T:0.34
Consensus pattern (172 bp):
TTAATTTATTAAAGGTCACTAAAACTTTAAAGAGTTTTAAGGAATTAAGTAATTTCCTAAACCAA
GAAAAAAATACACTAAGAGTTACTTAAATCCTTAATGGCACTTTAAGAAATTAAGAAATTCCTAA
AGCATGAGAAATTATTGATAACATGTTAAATCTGCATGATTT
Found at i:72464317 original size:16 final size:16
Alignment explanation
Indices: 72464296--72464363 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
72464286 TTTGGTTCGC
72464296 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
72464312 TGTATTGGATTAGAAG
1 TGTATTGGATTAGAGG
72464328 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
72464344 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
72464360 TGTA
1 TGTA
72464364 ATAGCAAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.26, C:0.00, G:0.35, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:72464824 original size:26 final size:28
Alignment explanation
Indices: 72464795--72464855 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
72464785 CATGAATTTG
*
72464795 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
72464821 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
72464849 TAAAATT
1 TATAATT
72464856 CTTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:72468583 original size:40 final size:40
Alignment explanation
Indices: 72468519--72468620 Score: 145
Period size: 40 Copynumber: 2.6 Consensus size: 40
72468509 GTGTTATACT
* *
72468519 CTTC-GTCTAGTGTGTTTCGGTTGGATTAGCTCTTACGAG
1 CTTCTGTCTAGTGTGTTTCGATTGGATTACCTCTTACGAG
**
72468558 CTTCTGTCTAGTGTGTTTCGATTGGATTACCTCTTTTGAG
1 CTTCTGTCTAGTGTGTTTCGATTGGATTACCTCTTACGAG
*
72468598 CTTCTGTCTGGTGTG-TTCGATTG
1 CTTCTGTCTAGTGTGTTTCGATTG
72468621 ATTTGACAAT
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
39 12 0.21
40 45 0.79
ACGTcount: A:0.11, C:0.18, G:0.26, T:0.45
Consensus pattern (40 bp):
CTTCTGTCTAGTGTGTTTCGATTGGATTACCTCTTACGAG
Found at i:72471901 original size:18 final size:20
Alignment explanation
Indices: 72471865--72471911 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
72471855 AGTTGTAAGT
72471865 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
72471885 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
72471904 ATGATATA
1 AT-ATATA
72471912 ACCTGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:72472435 original size:101 final size:101
Alignment explanation
Indices: 72472260--72472542 Score: 397
Period size: 101 Copynumber: 2.8 Consensus size: 101
72472250 TCGTCGTGAG
* * *
72472260 TCACGTGTGTAATACTAAGTGCATGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGATAGATCGCATGTGTAGTAC
72472325 TAAGTGCAGGCTACTATGCATACCCGTTAACTTCAA
66 TAAGTGCAGGCTACTATGCATACCCGTTAACTTCAA
***
72472361 TCACGTGTGTAGTACTAAGTGTGGGCTACTACGTGTACCAGATTGATAGATCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGATAGATCGCATGTGTAGTAC
* * **
72472426 TAAGTGCAGGCTACTATGCGTATCCGTTAACTTTGA
66 TAAGTGCAGGCTACTATGCATACCCGTTAACTTCAA
* * * * * *
72472462 TCATGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTA-AGTCACGTGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGATAGA-TCGCATGTGTAGTA
*
72472526 CTAAGTGTAGGCTACTA
65 CTAAGTGCAGGCTACTA
72472543 CGTGTACCAG
Statistics
Matches: 162, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
100 1 0.01
101 161 0.99
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGATAGATCGCATGTGTAGTAC
TAAGTGCAGGCTACTATGCATACCCGTTAACTTCAA
Found at i:72472603 original size:50 final size:50
Alignment explanation
Indices: 72472260--72472592 Score: 316
Period size: 50 Copynumber: 6.6 Consensus size: 50
72472250 TCGTCGTGAG
* * * *
72472260 TCACGTGTGTAATACTAAGTGCATGCTACTACGTGTACCAGATTGATAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGA
* * ** * *
72472310 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCG-TTAACTTCA-A
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--T-AGA
* **
72472361 TCACGTGTGTAGTACTAAGTGTGGGCTACTACGTGTACCAGATTGATAGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGA
* * * * *
72472411 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTATCC-G-TTAACTTTGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATTGA--TAGA
** * * * *
72472462 TCATGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTA-A
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGA
* * *
72472511 GTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGG
1 -TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGA
*
72472562 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA
72472593 TGCATACCAG
Statistics
Matches: 223, Mismatches: 48, Indels: 24
0.76 0.16 0.08
Matches are distributed among these distances:
49 8 0.04
50 139 0.62
51 71 0.32
52 5 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGA
Found at i:72472824 original size:16 final size:16
Alignment explanation
Indices: 72472803--72472834 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
72472793 AGAATGGAGT
72472803 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
72472819 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
72472835 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:72480574 original size:48 final size:47
Alignment explanation
Indices: 72480500--72480734 Score: 224
Period size: 48 Copynumber: 4.9 Consensus size: 47
72480490 GAAAAATGGG
* **
72480500 TGATATGTGTGCTAGTGTAAGGCCATGTCTGGGACATGGCATTGGCGT
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC-T
* *
72480548 TGATATGTGTGCTAGTGTAAGACCATGTCTGAGACATGGCATCGGCT
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCT
* * * *
72480595 AGATTATGAAAGT-C-AGTGTAAGACCATGTCTGGGACATGACATCAACAT
1 TGA-TATG--TGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC-T
* * * * *
72480644 TGAGACGAGGGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCCT
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAG-CT
* * * * *
72480692 CGACATGTGAGCCAGTGTAAGACCATGTCTAGGACAT-GCATCA
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCA
72480735 ACAATTTACC
Statistics
Matches: 158, Mismatches: 22, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
46 2 0.01
47 10 0.06
48 139 0.88
49 5 0.03
50 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (47 bp):
TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCT
Found at i:72480680 original size:96 final size:95
Alignment explanation
Indices: 72480513--72480737 Score: 256
Period size: 96 Copynumber: 2.3 Consensus size: 95
72480503 TATGTGTGCT
* *** * * * * *
72480513 AGTGTAAGGCCATGTCTGGGACATGGCATTGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCAACATTGAGACGAGGGCTAGTGTAAGACCATGTCT
* * *
72480578 GAGACATGGCATC-GGCTAGATTATGAAAGTC
65 GAGACATGGCATCAGCCTAGA-CATGAAAGCC
72480609 AGTGTAAGACCATGTCTGGGACATGACATCAACATTGAGACGAGGGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATG-CATCAACATTGAGACGAGGGCTAGTGTAAGACCATGTCT
* **
72480674 -AGGACATGGCATCAGCCTCGACATGTGAGCC
65 GA-GACATGGCATCAGCCTAGACATGAAAGCC
*
72480705 AGTGTAAGACCATGTCTAGGACATGCATCAACA
1 AGTGTAAGACCATGTCTGGGACATGCATCAACA
72480738 ATTTACCCTC
Statistics
Matches: 110, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
95 10 0.09
96 95 0.86
97 5 0.05
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (95 bp):
AGTGTAAGACCATGTCTGGGACATGCATCAACATTGAGACGAGGGCTAGTGTAAGACCATGTCTG
AGACATGGCATCAGCCTAGACATGAAAGCC
Found at i:72504730 original size:45 final size:45
Alignment explanation
Indices: 72504681--72504783 Score: 170
Period size: 45 Copynumber: 2.3 Consensus size: 45
72504671 TTTCAGTCAG
72504681 GGTCTTACTCATTTATATTATGATGCCATAGCATATTTCAACCAT
1 GGTCTTACTCATTTATATTATGATGCCATAGCATATTTCAACCAT
* * *
72504726 GGTCTTACTCATTTCTATTATGATGCCATAGCATCTTTCAACTAT
1 GGTCTTACTCATTTATATTATGATGCCATAGCATATTTCAACCAT
*
72504771 GGTCTTACACATT
1 GGTCTTACTCATT
72504784 GTAGGTGTAT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 54 1.00
ACGTcount: A:0.26, C:0.21, G:0.12, T:0.41
Consensus pattern (45 bp):
GGTCTTACTCATTTATATTATGATGCCATAGCATATTTCAACCAT
Found at i:72506702 original size:28 final size:28
Alignment explanation
Indices: 72506636--72506763 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
72506626 CATGAGATTG
* * **
72506636 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
72506665 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
72506693 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
72506722 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
72506750 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
72506764 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72506725 original size:57 final size:57
Alignment explanation
Indices: 72506636--72506763 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
72506626 CATGAGATTG
*
72506636 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
72506693 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
72506750 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
72506764 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:72514675 original size:28 final size:28
Alignment explanation
Indices: 72514609--72514736 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
72514599 CATGAGATTG
* * **
72514609 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
72514638 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
72514666 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
72514695 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
72514723 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
72514737 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72514698 original size:57 final size:57
Alignment explanation
Indices: 72514609--72514736 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
72514599 CATGAGATTG
*
72514609 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
72514666 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
72514723 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
72514737 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:72519355 original size:27 final size:27
Alignment explanation
Indices: 72519324--72519384 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
72519314 ATACTGAGTC
72519324 ATTTCTT-ACGAGTTTGCCATACATC-TT
1 ATTTCTTCA-GAGTTTGCCATAC-TCATT
*
72519351 ATTTCTTCAGGGTTTGCCATACTCATT
1 ATTTCTTCAGAGTTTGCCATACTCATT
72519378 ATTTCTT
1 ATTTCTT
72519385 TTAGGGTCCG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 2 0.06
27 28 0.90
28 1 0.03
ACGTcount: A:0.20, C:0.21, G:0.11, T:0.48
Consensus pattern (27 bp):
ATTTCTTCAGAGTTTGCCATACTCATT
Found at i:72522111 original size:47 final size:45
Alignment explanation
Indices: 72522048--72522214 Score: 163
Period size: 47 Copynumber: 3.6 Consensus size: 45
72522038 TGTGTGCTAG
*
72522048 TGTAAGACATGTCTGGGACATGCATCAGCCACAATATGATAGCTAA
1 TGTAAGACATGTCTGGGACATGCATCAGCCACAA-ATGATAGCCAA
* * * **
72522094 TGTAAGACCGTGTCTGGGACATGGCATCAGCGTAGAGAATGAGCGCCAA
1 TGTAAGA-CATGTCTGGGACAT-GCATCAGC-CACA-AATGATAGCCAA
** * * *
72522143 TGTAAGACATGTCTGGGACATGCATTGGCCTCGACGATGATAGCCAT
1 TGTAAGACATGTCTGGGACATGCATCAGCCAC-A-AATGATAGCCAA
*
72522190 TGTAAGACGTGTCTGGGACATGCAT
1 TGTAAGACATGTCTGGGACATGCAT
72522215 TGGCTAAGAG
Statistics
Matches: 98, Mismatches: 18, Indels: 9
0.78 0.14 0.07
Matches are distributed among these distances:
46 7 0.07
47 52 0.53
48 21 0.21
49 17 0.17
50 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (45 bp):
TGTAAGACATGTCTGGGACATGCATCAGCCACAAATGATAGCCAA
Found at i:72522337 original size:49 final size:47
Alignment explanation
Indices: 72522046--72522358 Score: 217
Period size: 49 Copynumber: 6.6 Consensus size: 47
72522036 CTTGTGTGCT
* * *
72522046 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAAT-ATGATAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGATGATGATAGCC
* * * * **
72522092 AATGTAAGACCGTGTCTGGGACATGGCATCAGCGTAGA-GAATGAGCGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGATG-ATGATAGCC
* ** *
72522141 AATGTAAGACATGTCTGGGACATGCATTGGCCTCGACGATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGATGATGATAGCC
* * * * * * * *
72522188 ATTGTAAGACGTGTCTGGGACATGCAT-TGGCTAAGA-GTTG-TTG-T
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCT-CGATGATGATAGCC
* * * * *
72522232 AGTGTAAGGCATGTCTGGGACATGCATCAG-CACGTATAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCG-AT-GATGATAGCC
* *
72522280 AGTATAAGACCATGTCTGGGACATGGCATTAGCCTCGATGATGATAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGATGATGATAGCC
* *
72522329 AGTGTAAGACCATATCTAGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
72522359 GGCAACATAT
Statistics
Matches: 207, Mismatches: 45, Indels: 27
0.74 0.16 0.10
Matches are distributed among these distances:
43 1 0.00
44 26 0.13
45 3 0.01
46 16 0.08
47 57 0.28
48 31 0.15
49 62 0.30
50 8 0.04
51 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGATGATGATAGCC
Found at i:72523209 original size:55 final size:55
Alignment explanation
Indices: 72523123--72523257 Score: 166
Period size: 55 Copynumber: 2.5 Consensus size: 55
72523113 GCACTTAAAA
* ** * *
72523123 TTTAAAGTCAGTGTTGTACACGGACATGCCACA-TGG-GCATGTGTCATGGTCGTGT
1 TTTAAAGCCAGTGTTGTACACGGGTAGGCCACACTGGAG--TGTGTCATGGCCGTGT
*
72523178 TTTAATGCCAGTGTTGTACACGGGTAGGCCACACTGGAGTGTGTCATGGCCGTGT
1 TTTAAAGCCAGTGTTGTACACGGGTAGGCCACACTGGAGTGTGTCATGGCCGTGT
* *
72523233 TTTAAAGTCAGTGTTGCACACGGGT
1 TTTAAAGCCAGTGTTGTACACGGGT
72523258 TAAGGGCACA
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
55 65 0.94
56 3 0.04
57 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (55 bp):
TTTAAAGCCAGTGTTGTACACGGGTAGGCCACACTGGAGTGTGTCATGGCCGTGT
Found at i:72525888 original size:145 final size:145
Alignment explanation
Indices: 72525690--72525963 Score: 512
Period size: 145 Copynumber: 1.9 Consensus size: 145
72525680 AACTCGAGGT
* *
72525690 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
72525755 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
72525820 ATTTCAAGTTCGCAA
131 ATTTCAAGTTCGCAA
*
72525835 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
72525900 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATG
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATG
72525964 TACTTTAAAC
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
145 125 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.30
Consensus pattern (145 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ATTTCAAGTTCGCAA
Found at i:72525982 original size:29 final size:30
Alignment explanation
Indices: 72525948--72526019 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 30
72525938 ATCAACCACG
*
72525948 CACACTTAGTGCCATGTAC-TTTAAACTCA
1 CACACTTAGTGCCATGTACATTTAAACCCA
*
72525977 CACACTTAGTG-C-TGTACAATTTAAACCCG
1 CACACTTAGTGCCATGTAC-ATTTAAACCCA
72526006 CACACTTAGTGCCA
1 CACACTTAGTGCCA
72526020 ATCTCATGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
27 5 0.14
28 1 0.03
29 30 0.81
30 1 0.03
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.28
Consensus pattern (30 bp):
CACACTTAGTGCCATGTACATTTAAACCCA
Found at i:72531387 original size:18 final size:18
Alignment explanation
Indices: 72531364--72531416 Score: 81
Period size: 18 Copynumber: 2.9 Consensus size: 18
72531354 GAAATTGCAT
*
72531364 ACTGTTTACTGTTA-TCGC
1 ACTGTTTACTATTACT-GC
72531382 ACTGTTTACTATTACTGC
1 ACTGTTTACTATTACTGC
72531400 ACTGTTTACTATTACTG
1 ACTGTTTACTATTACTG
72531417 TAATGGGCCA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
18 32 0.97
19 1 0.03
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.45
Consensus pattern (18 bp):
ACTGTTTACTATTACTGC
Found at i:72531899 original size:18 final size:18
Alignment explanation
Indices: 72531878--72531914 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
72531868 AGTATAACGA
*
72531878 TTTGAAATTAAATAATTT
1 TTTGAAAATAAATAATTT
*
72531896 TTTGAAAATGAATAATTT
1 TTTGAAAATAAATAATTT
72531914 T
1 T
72531915 CAGAAACAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (18 bp):
TTTGAAAATAAATAATTT
Found at i:72537749 original size:15 final size:15
Alignment explanation
Indices: 72537729--72537761 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
72537719 ACATAATGAA
72537729 TAACATGTGTTTCAC
1 TAACATGTGTTTCAC
72537744 TAACATGTGTTTCAC
1 TAACATGTGTTTCAC
72537759 TAA
1 TAA
72537762 TATCAACTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.39
Consensus pattern (15 bp):
TAACATGTGTTTCAC
Found at i:72549180 original size:22 final size:22
Alignment explanation
Indices: 72549152--72549273 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
72549142 TTCCACATCC
72549152 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
72549174 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
72549198 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
72549221 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
72549245 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
72549268 ATCACA
1 ATCACA
72549274 CATACCCATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:72549187 original size:47 final size:47
Alignment explanation
Indices: 72549124--72549767 Score: 888
Period size: 47 Copynumber: 13.6 Consensus size: 47
72549114 CCCTTCGGGA
* * *
72549124 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
72549171 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
72549218 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* ** *
72549265 CTTATCACACATACCCATGTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
72549312 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
72549359 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
72549406 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
72549453 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
72549500 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
72549547 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
72549596 CTTATCACATATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* * *
72549645 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
72549692 CTTATCACATATATATACACT-TTCACATTCATCACATGGGCCATTAGGC
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
72549741 CTTATCACATATATACACT-TTCACATT
1 CTTATCACATATATACA-TGTTCACATT
72549768 TATTCAAATA
Statistics
Matches: 560, Mismatches: 31, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 422 0.75
49 136 0.24
50 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:72549297 original size:25 final size:25
Alignment explanation
Indices: 72549268--72549345 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
72549258 ATTCGGCCTT
72549268 ATCACACATACCCATGTTCACATTC
1 ATCACACATACCCATGTTCACATTC
* ** *
72549293 ATCACA-TTGGCCA--TTCGACCTT-
1 ATCACACATACCCATGTTC-ACATTC
*
72549315 ATCACACATACACATGTTCACATTC
1 ATCACACATACCCATGTTCACATTC
72549340 ATCACA
1 ATCACA
72549346 TTGGCCATTC
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
22 9 0.23
23 7 0.18
24 8 0.21
25 15 0.38
ACGTcount: A:0.32, C:0.33, G:0.06, T:0.28
Consensus pattern (25 bp):
ATCACACATACCCATGTTCACATTC
Found at i:72549322 original size:24 final size:24
Alignment explanation
Indices: 72549248--72549323 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
72549238 TCACATTCAT
*
72549248 CACATTGGCCATTCGGCCTTATCA
1 CACATTGGCCATTCGACCTTATCA
** *
72549272 CACA-TACCCATGTTC-A-CAT-TCA
1 CACATTGGCCA--TTCGACCTTATCA
72549294 TCACATTGGCCATTCGACCTTATCA
1 -CACATTGGCCATTCGACCTTATCA
72549319 CACAT
1 CACAT
72549324 ACACATGTTC
Statistics
Matches: 38, Mismatches: 7, Indels: 14
0.64 0.12 0.24
Matches are distributed among these distances:
22 6 0.16
23 11 0.29
24 15 0.39
25 6 0.16
ACGTcount: A:0.26, C:0.34, G:0.11, T:0.29
Consensus pattern (24 bp):
CACATTGGCCATTCGACCTTATCA
Done.