Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 220 of 333
Found at i:72551158 original size:85 final size:85
Alignment explanation
Indices: 72551029--72551207 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
72551019 TATTTTATTG
* *
72551029 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCAGTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
72551094 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
72551114 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
72551179 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
72551199 CCCATGCTC
1 CCCATGCTC
72551208 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.26, C:0.27, G:0.09, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:72552505 original size:40 final size:40
Alignment explanation
Indices: 72552467--72552696 Score: 352
Period size: 40 Copynumber: 5.8 Consensus size: 40
72552457 ACGTCACCAA
* * * * *
72552467 CATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAG
1 CATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAG
* ** * *
72552507 CACGAATGCTCTTCGGGGTTTAGCACGGATATATCACTAG
1 CATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAG
* *
72552547 CACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAG
1 CATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAG
72552587 CATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAG
1 CATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAG
72552627 CATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAG
1 CATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAG
72552667 CATGAATGCTCTTCGGGACTTAGCCCGGAT
1 CATGAATGCTCTTCGGGACTTAGCCCGGAT
72552697 CATTGTCGAG
Statistics
Matches: 175, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 175 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAG
Found at i:72552823 original size:38 final size:38
Alignment explanation
Indices: 72552754--72552828 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
72552744 GAATTTTAAT
*
72552754 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
72552792 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
72552829 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:72555310 original size:22 final size:22
Alignment explanation
Indices: 72555282--72555403 Score: 70
Period size: 22 Copynumber: 5.3 Consensus size: 22
72555272 TTCCACATCC
72555282 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
72555304 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
72555328 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
72555351 ATCTCATATGTG-CATGTTC-ACATT
1 ATCACAT-TG-GCCA--TTCGGCCTT
72555375 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
72555398 ATCACA
1 ATCACA
72555404 CATACACATG
Statistics
Matches: 72, Mismatches: 16, Indels: 24
0.64 0.14 0.21
Matches are distributed among these distances:
22 26 0.36
23 13 0.18
24 13 0.18
25 20 0.28
ACGTcount: A:0.25, C:0.30, G:0.12, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:72555317 original size:47 final size:47
Alignment explanation
Indices: 72555254--72555532 Score: 400
Period size: 47 Copynumber: 5.9 Consensus size: 47
72555244 CCCTTCGGGA
* * *
72555254 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
72555301 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* * *
72555348 CTTATCTCATATGTGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
72555395 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
72555442 CTTATCACACATACACATGTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
72555489 CTTATCTCATCTATGCATGTTCACATTCATCACATTGGCCATTC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTC
72555533 TTTGACACCC
Statistics
Matches: 213, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 1 0.00
47 212 1.00
ACGTcount: A:0.25, C:0.30, G:0.10, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:72555508 original size:141 final size:141
Alignment explanation
Indices: 72555275--72555532 Score: 446
Period size: 141 Copynumber: 1.8 Consensus size: 141
72555265 TATACACTTC
* *
72555275 CACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGC
1 CACATCCATCACATTGGCCATTCGGCCTTATCACACATACACACTTTCACATTCATCACATTGGC
*
72555340 CATTCGGCCTTATCTCATATGTGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
66 CATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
72555405 ATACACATGTT
131 ATACACATGTT
*
72555416 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA-TGTTCACATTCATCACATTGG
1 CACATCCATCACATTGGCCATTCGGCCTTATCACACATACACACT-TTCACATTCATCACATTGG
* *
72555480 TCATTCGGCCTTATCTCATCTATGCATGTTCACATTCATCACATTGGCCATTC
65 CCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTC
72555533 TTTGACACCC
Statistics
Matches: 110, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
140 1 0.01
141 109 0.99
ACGTcount: A:0.25, C:0.31, G:0.11, T:0.33
Consensus pattern (141 bp):
CACATCCATCACATTGGCCATTCGGCCTTATCACACATACACACTTTCACATTCATCACATTGGC
CATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
ATACACATGTT
Found at i:72558012 original size:47 final size:47
Alignment explanation
Indices: 72557947--72558637 Score: 986
Period size: 47 Copynumber: 14.4 Consensus size: 47
72557937 CAGCCAAGAG
*
72557947 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
72557994 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
72558041 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
72558090 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
72558141 AGTATATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AG----TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
72558192 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
72558239 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
72558286 AGTGTATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
72558337 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
72558384 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
72558431 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
72558478 AGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
72558525 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * * * * * * *
72558572 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
72558619 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
72558638 TCCCGAAAGG
Statistics
Matches: 598, Mismatches: 34, Indels: 24
0.91 0.05 0.04
Matches are distributed among these distances:
47 416 0.70
49 44 0.07
51 134 0.22
53 4 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:72558305 original size:145 final size:145
Alignment explanation
Indices: 72557947--72558578 Score: 1019
Period size: 145 Copynumber: 4.4 Consensus size: 145
72557937 CAGCCAAGAG
72557947 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA--G--TGTATATATGTA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTA
* *
72558008 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCC
66 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA--TATATGTGATAAGGCCTAATAGCC
*
72558073 GATGTGATGAATGTGAA
129 GACGTGATGAATGTGAA
* * *
72558090 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATGTATATA
1 A--G--TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTATATA
*
72558155 TGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAG
62 TGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG
72558220 CCGACGTGATGAATGTGAA
127 CCGACGTGATGAATGTGAA
72558239 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTA
*
72558304 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGA
66 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
72558369 CGTGATGAATGTGAA
131 CGTGATGAATGTGAA
72558384 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA--G--TGTATATATGTA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTA
* *
72558445 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
66 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
* *
72558510 TGCGATGAATGTGAA
131 CGTGATGAATGTGAA
* * *
72558525 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTAT
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
72558579 ATATGTGACA
Statistics
Matches: 459, Mismatches: 18, Indels: 22
0.92 0.04 0.04
Matches are distributed among these distances:
141 132 0.29
143 3 0.01
145 190 0.41
147 45 0.10
149 39 0.08
151 50 0.11
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (145 bp):
AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTA
ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
CGTGATGAATGTGAA
Found at i:72558812 original size:37 final size:37
Alignment explanation
Indices: 72558756--72558834 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
72558746 CCGAGCTCTA
* * *
72558756 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
72558793 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
72558830 AAGAC
1 AAGAC
72558835 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:72560205 original size:23 final size:23
Alignment explanation
Indices: 72560179--72560255 Score: 61
Period size: 23 Copynumber: 3.3 Consensus size: 23
72560169 TTCGGGGTGT
72560179 TACACATTCGGCCTTATCACACA
1 TACACATTCGGCCTTATCACACA
* * *
72560202 TACACATGTTC-ACATTCATCACA-T
1 TACACA--TTCGGCCTT-ATCACACA
*
72560226 TGGC-CATTCGGCCTTATCACACA
1 T-ACACATTCGGCCTTATCACACA
72560249 TACACAT
1 TACACAT
72560256 GTTCACATTC
Statistics
Matches: 39, Mismatches: 8, Indels: 14
0.64 0.13 0.23
Matches are distributed among these distances:
22 10 0.26
23 13 0.33
24 6 0.15
25 10 0.26
ACGTcount: A:0.30, C:0.32, G:0.09, T:0.29
Consensus pattern (23 bp):
TACACATTCGGCCTTATCACACA
Found at i:72560252 original size:47 final size:47
Alignment explanation
Indices: 72560183--72560492 Score: 471
Period size: 47 Copynumber: 6.6 Consensus size: 47
72560173 GGGTGTTACA
* *
72560183 CATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGC
1 CATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGC
* *
72560230 CATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGC
1 CATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGC
* * *
72560277 CATTCGGCCTTATCTCATATATGCTTGTTCACATTCATCACATTGGC
1 CATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGC
* *
72560324 CATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGC
1 CATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGC
72560371 CATTCGGCCTTATCACATATATATACACT-TTCACATTCATCACATTGGC
1 CATTCGGCCTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGC
*
72560420 CATTCGGCCTTATCACATATATACACT-TTCACATTCATCACATCGGC
1 CATTCGGCCTTATCACATATATACA-TGTTCACATTCATCACATTGGC
*
72560467 CATTAGGCCTTATCACATATATACAT
1 CATTCGGCCTTATCACATATATACAT
72560493 CACATATATA
Statistics
Matches: 246, Mismatches: 14, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 201 0.82
49 43 0.17
50 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGC
Found at i:72560483 original size:31 final size:31
Alignment explanation
Indices: 72560448--72560544 Score: 96
Period size: 30 Copynumber: 3.2 Consensus size: 31
72560438 ATATACACTT
72560448 TCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATTCATCACATCGGCCATTAGGCCTTA
* **
72560479 TCACATAT-AT-ACATC--ACATATATACACTT-
1 TCACAT-TCATCACATCGGCCAT-TAGGC-CTTA
72560508 TCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATTCATCACATCGGCCATTAGGCCTTA
*
72560539 CCACAT
1 TCACAT
72560545 ATATATACAC
Statistics
Matches: 51, Mismatches: 7, Indels: 16
0.69 0.09 0.22
Matches are distributed among these distances:
28 4 0.08
29 11 0.22
30 16 0.31
31 16 0.31
32 4 0.08
ACGTcount: A:0.31, C:0.31, G:0.08, T:0.30
Consensus pattern (31 bp):
TCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:72560496 original size:13 final size:13
Alignment explanation
Indices: 72560478--72560504 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
72560468 ATTAGGCCTT
72560478 ATCACATATATAC
1 ATCACATATATAC
72560491 ATCACATATATAC
1 ATCACATATATAC
72560504 A
1 A
72560505 CTTTCACATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
ATCACATATATAC
Found at i:72560500 original size:60 final size:60
Alignment explanation
Indices: 72560431--72560600 Score: 254
Period size: 60 Copynumber: 3.0 Consensus size: 60
72560421 ATTCGGCCTT
72560431 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
72560491 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA-C-C------AC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
72560543 AT---ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
72560600 A
1 A
72560601 CTTTCACATT
Statistics
Matches: 101, Mismatches: 1, Indels: 19
0.83 0.01 0.16
Matches are distributed among these distances:
49 42 0.42
50 1 0.01
51 1 0.01
52 4 0.04
57 3 0.03
58 1 0.01
59 1 0.01
60 48 0.48
ACGTcount: A:0.33, C:0.28, G:0.07, T:0.32
Consensus pattern (60 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:72560546 original size:47 final size:47
Alignment explanation
Indices: 72560493--72560610 Score: 200
Period size: 49 Copynumber: 2.5 Consensus size: 47
72560483 ATATATACAT
72560493 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAC
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAC
* *
72560540 CACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTAT
1 CAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAC
72560589 CACATATATACACTTTCACATT
1 CACATATATACACTTTCACATT
72560611 TATTCAAATA
Statistics
Matches: 67, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
47 22 0.33
49 45 0.67
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (47 bp):
CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAC
Found at i:72560577 original size:109 final size:107
Alignment explanation
Indices: 72560389--72560600 Score: 370
Period size: 109 Copynumber: 2.0 Consensus size: 107
72560379 CTTATCACAT
* * *
72560389 ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATACACTTTCACAT
72560454 TCATCACATCGGCCATTAGGCCTTATCACATATATACATCAC
66 TCATCACATCGGCCATTAGGCCTTATCACATATATACATCAC
72560496 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATATACACTTTCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTACCAC--ATATATACACTTTCAC
*
72560561 ATTCATCACATTGGCCATTAGGCCTTATCACATATATACA
64 ATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
72560601 CTTTCACATT
Statistics
Matches: 99, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
107 44 0.44
109 55 0.56
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.33
Consensus pattern (107 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATACACTTTCACAT
TCATCACATCGGCCATTAGGCCTTATCACATATATACATCAC
Found at i:72562003 original size:85 final size:85
Alignment explanation
Indices: 72561874--72562052 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
72561864 TATTTTATTG
*
72561874 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
72561939 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
72561959 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
72562024 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
72562044 CCCATGCTC
1 CCCATGCTC
72562053 ATGGCTGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:72565644 original size:20 final size:19
Alignment explanation
Indices: 72565610--72565653 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 19
72565600 AGAAATAAAC
*
72565610 ATGAGATGAGAAATGAGAT
1 ATGAAATGAGAAATGAGAT
72565629 ATGAAATGATGAAATGAGAT
1 ATGAAATGA-GAAATGAGAT
72565649 ATGAA
1 ATGAA
72565654 TCTTGAAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.50, C:0.00, G:0.27, T:0.23
Consensus pattern (19 bp):
ATGAAATGAGAAATGAGAT
Found at i:72567069 original size:47 final size:47
Alignment explanation
Indices: 72566995--72567131 Score: 247
Period size: 47 Copynumber: 2.9 Consensus size: 47
72566985 TCAAGAGGGA
*
72566995 ATAAATAGTGATAAGATTGTAGATAGTGGAAGACCAAGTTTAGAAAAT
1 ATAAATAGTGA-AAGAGTGTAGATAGTGGAAGACCAAGTTTAGAAAAT
72567043 ATAAATAGTGAAAGAGTGTAGATAGTGGAAGACCAAGTTTAGAAAAT
1 ATAAATAGTGAAAGAGTGTAGATAGTGGAAGACCAAGTTTAGAAAAT
*
72567090 ATAAATAGTGAAAGAGTGTAGATAGTGGAAAACCAAGTTTAG
1 ATAAATAGTGAAAGAGTGTAGATAGTGGAAGACCAAGTTTAG
72567132 CATTGCATAG
Statistics
Matches: 87, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
47 76 0.87
48 11 0.13
ACGTcount: A:0.46, C:0.04, G:0.25, T:0.25
Consensus pattern (47 bp):
ATAAATAGTGAAAGAGTGTAGATAGTGGAAGACCAAGTTTAGAAAAT
Found at i:72571192 original size:24 final size:24
Alignment explanation
Indices: 72571163--72571210 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
72571153 ATTTAAATAT
72571163 TAAAATATGCTCTAAGTCCCTATA
1 TAAAATATGCTCTAAGTCCCTATA
* *
72571187 TAAAATATGCTTTAAGTCTCTATA
1 TAAAATATGCTCTAAGTCCCTATA
72571211 CACTCCGTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.38
Consensus pattern (24 bp):
TAAAATATGCTCTAAGTCCCTATA
Found at i:72573977 original size:40 final size:40
Alignment explanation
Indices: 72573906--72574058 Score: 229
Period size: 40 Copynumber: 3.9 Consensus size: 40
72573896 GATATAGCTT
*
72573906 CTCGCTCAAATGCCTTC-GGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
72573945 CTCGCACAATTGCATTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* * *
72573985 CTCACACAATTGCCTTCGGGACTTAGCCCGGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
72574025 CTCGCACAAATGCCTTCGGG-CTTAGCCCGATTAT
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
72574059 CAATCCGAAT
Statistics
Matches: 103, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
39 26 0.25
40 77 0.75
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:72581960 original size:40 final size:40
Alignment explanation
Indices: 72581916--72582069 Score: 238
Period size: 40 Copynumber: 3.9 Consensus size: 40
72581906 AATATAGCTT
*
72581916 CTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* * *
72581956 CTCGCACAATTGCCTTCGAGACTTAGCCCAGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
72581996 CTCGCACAATTGCCTTCGGGACTTAGCCCGGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
72582036 CTCGCACAAATGCCTTCGGG-CTTAGCCCGATTAT
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
72582070 CAATCCGAAT
Statistics
Matches: 104, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 12 0.12
40 92 0.88
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:72585802 original size:27 final size:27
Alignment explanation
Indices: 72585772--72585949 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72585762 ATATTGAGTC
* * * *
72585772 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
72585799 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
72585826 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
72585854 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
72585881 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
72585908 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
72585935 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
72585950 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:72585911 original size:82 final size:81
Alignment explanation
Indices: 72585793--72585948 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72585783 TGCTATATAA
* *
72585793 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
72585858 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
72585875 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
72585939 CACTTAGTGC
65 CACTTAGTGC
72585949 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:72600555 original size:21 final size:22
Alignment explanation
Indices: 72600531--72600584 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
72600521 CTGGCTTGTT
*
72600531 TTATTTTTATTTT-TTCCCTTA
1 TTATTTTTATTTTATTCCATTA
*
72600552 TTATTGTTATTTTATTCCATTA
1 TTATTTTTATTTTATTCCATTA
*
72600574 TT-TATTTATTT
1 TTATTTTTATTT
72600585 ATTACTTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 19 0.68
22 9 0.32
ACGTcount: A:0.19, C:0.09, G:0.02, T:0.70
Consensus pattern (22 bp):
TTATTTTTATTTTATTCCATTA
Found at i:72600622 original size:3 final size:3
Alignment explanation
Indices: 72600614--72600688 Score: 73
Period size: 3 Copynumber: 25.0 Consensus size: 3
72600604 CAAATTTTAG
* * *
72600614 ATT ATT ATT ATT ATT AGT ATT GTT ATT ATT ATT ATT ATT GTT ATT -TAT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T
* *
72600662 ATT ATT GTT -TT CATC ATT ATT ATT ATT
1 ATT ATT ATT ATT -ATT ATT ATT ATT ATT
72600689 GTTTATGCAT
Statistics
Matches: 59, Mismatches: 9, Indels: 8
0.78 0.12 0.11
Matches are distributed among these distances:
2 3 0.05
3 54 0.92
4 2 0.03
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:72600664 original size:18 final size:18
Alignment explanation
Indices: 72600618--72600691 Score: 89
Period size: 18 Copynumber: 4.1 Consensus size: 18
72600608 TTTTAGATTA
*
72600618 TTATTATTATTAGTATTG
1 TTATTATTATTATTATTG
72600636 TTATTATTATTATTATTG
1 TTATTATTATTATTATTG
*
72600654 TTATT-TATATTATTGTT-
1 TTATTAT-TATTATTATTG
*
72600671 TTCATCATTATTATTATTG
1 TT-ATTATTATTATTATTG
72600690 TT
1 TT
72600692 TATGCATATT
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
17 3 0.06
18 42 0.88
19 3 0.06
ACGTcount: A:0.26, C:0.03, G:0.07, T:0.65
Consensus pattern (18 bp):
TTATTATTATTATTATTG
Found at i:72611142 original size:30 final size:30
Alignment explanation
Indices: 72611108--72611168 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
72611098 TCCTTAACTC
72611108 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
72611138 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
72611168 A
1 A
72611169 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:72612155 original size:45 final size:45
Alignment explanation
Indices: 72612086--72612833 Score: 232
Period size: 44 Copynumber: 16.5 Consensus size: 45
72612076 GGTGAATCTT
* *
72612086 ATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCGCTAAGTCTA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACTAAGTCTA
*** * *
72612131 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAAC-AAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTG-AAGCCACTAAGTCTA
* * * * * *
72612176 ATCTCTCTGAAGTTACAGTAGAGCAGATTAAAGCTA-TAAATCCT-
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACTAAGT-CTA
* ** * *
72612220 ATAC-CCCTGAACTTGCAGTGG-G-ATGGATTGAAATCATTATAGCGAATCTT
1 AT-CTCCCTGAAGTTGCAGTGGAGCA--GATTGAAGCCACTA-A--G--TCTA
* *
72612270 ATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGCTACTAAGTCTA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACTAAGTCTA
* *** * *
72612315 ATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGATGCGAA-TCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACTAAGTCTA
* ** * * * *
72612359 AT-TTCCTCGAAGTTGCAGTGGAATAGATTAAAGCTA-TGAGTTACAA
1 ATCTCCCT-GAAGTTGCAGTGGAGCAGATTGAAGCCACTAAG-T-CTA
* * * * * *
72612405 ATCTTATCTCCTCGAAGTTGCAGAT-GAGAAGATTGTAGACGCGAA-TCTT
1 ATC---TC-CCT-GAAGTTGCAG-TGGAGCAGATTGAAGCCACTAAGTCTA
* * * * * * *
72612454 ATCT-TCTAAAGTTGCAGTGAAGCAGATTAAAGCTAC-AAGTATT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACTAAGTCTA
* * * * * **
72612497 ATCGCTCTGAAGTTGCAGTGGAGTAGATTGAAGTCAC-AAATCCC
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACTAAGTCTA
* * ** * * *
72612541 ATAC-CCCTGAAGTTGCAGTGG-GACGGATTAAAGTTATTATGGCGAATCTT
1 AT-CTCCCTGAAGTTGCAGTGGAG-CAGATTGAAGCCACTA-----AGTCTA
* * *
72612591 ATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCAC-AAGTCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACTAAGTCTA
* * * * ** * *
72612635 ATC-CCCTTGAAGTTGCAATGGACCAGACTAAAGATAGCGAA-TCTT
1 ATCTCCC-TGAAGTTGCAGTGGAGCAGATTGAAGCCA-CTAAGTCTA
* * * * * * *
72612680 ATCTCTCTGAAATTGCAGTAGAGCAGATTAAAGCTA-T-AGACCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACTAAG-TCTA
* * * ** * *
72612724 ATCTCCCTAAAGTTGTAGTGGAGCAGGTTG-AGTTTAC-AAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-CCACTAAGTCTA
* * * *
72612768 ATCTCCTTGAAGTTGCGGTGGA-CTAGATTGAAGCCACGAA-TCTT
1 ATCTCCCTGAAGTTGCAGTGGAGC-AGATTGAAGCCACTAAGTCTA
*
72612812 ATCTCCCTGAAGTTGTAGTGGA
1 ATCTCCCTGAAGTTGCAGTGGA
72612834 ATAGATTAAA
Statistics
Matches: 524, Mismatches: 127, Indels: 105
0.69 0.17 0.14
Matches are distributed among these distances:
42 5 0.01
43 39 0.07
44 225 0.43
45 142 0.27
46 12 0.02
47 1 0.00
49 10 0.02
50 62 0.12
51 25 0.05
52 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (45 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACTAAGTCTA
Found at i:72612336 original size:184 final size:183
Alignment explanation
Indices: 72612048--72612395 Score: 527
Period size: 184 Copynumber: 1.9 Consensus size: 183
72612038 ACAGTCAAAG
* * * *
72612048 TTGCAGTGAGATGGATTGAAATCATTATGGTGAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGA
1 TTGCAGTGAGATGGATTGAAATCATTATAGCGAATCTTATCTCCCTGAAGTTACAGTGGAGCAGA
*
72612113 TTGAAGCCGCTAAGTCTAATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAACAAATCTTAT
66 TTGAAGCCACTAAGTCTAATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAAT-ACAAATCTTAT
*
72612178 CT-CTCTGAAGTTACAGTAGAGCAGATTAAAGCTATAAATCCTATACCCCTGAAC
130 CTCCTC-GAAGTTACAGTAGAACAGATTAAAGCTATAAATCCTATACCCCTGAAC
*
72612232 TTGCAGTGGGATGGATTGAAATCATTATAGCGAATCTTATCTCCCTGAAGTTACAGTGGAGCAGA
1 TTGCAGTGAGATGGATTGAAATCATTATAGCGAATCTTATCTCCCTGAAGTTACAGTGGAGCAGA
* * * * * *
72612297 TTGAAGCTACTAAGTCTAATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGATGCGAATCTTATT
66 TTGAAGCCACTAAGTCTAATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATACAAATCTTATC
* * *
72612362 TCCTCGAAGTTGCAGTGGAATAGATTAAAGCTAT
131 TCCTCGAAGTTACAGTAGAACAGATTAAAGCTAT
72612396 GAGTTACAAA
Statistics
Matches: 147, Mismatches: 16, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
183 35 0.24
184 112 0.76
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.30
Consensus pattern (183 bp):
TTGCAGTGAGATGGATTGAAATCATTATAGCGAATCTTATCTCCCTGAAGTTACAGTGGAGCAGA
TTGAAGCCACTAAGTCTAATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATACAAATCTTATC
TCCTCGAAGTTACAGTAGAACAGATTAAAGCTATAAATCCTATACCCCTGAAC
Found at i:72612387 original size:44 final size:44
Alignment explanation
Indices: 72612079--72612529 Score: 165
Period size: 45 Copynumber: 9.9 Consensus size: 44
72612069 TCATTATGGT
**
72612079 GAATCTTATCTTCCT-GAAGTTGCAGTGGAGCAGATTGAAGCCGC
1 GAATCTTAT-TTCCTCGAAGTTGCAGTGGAGCAGATTGAAGATGC
* * * * *
72612123 TAAGTCTAATCTCC-CTGAAGTTGCAGTGGAGCAGATTGAAAATAAC
1 GAA-TCTTATTTCCTC-GAAGTTGCAGTGGAGCAGATTGAAGAT-GC
* * * * * * **
72612169 AAATCTTATCT-CTCTGAAGTTACAGTAGAGCAGATTAAAGCTAT
1 GAATCTTATTTCCTC-GAAGTTGCAGTGGAGCAGATTGAAGATGC
* * * * * *
72612213 AAATCCTA-TACCCCTGAACTTGCAGTGG-G-ATGGATTGAAATCATTATAGC
1 GAATCTTATTTCCTC-GAAGTTGCAGTGGAGCA--GATTG--A--A-GAT-GC
* * * *
72612263 GAATCTTATCTCC-CTGAAGTTACAGTGGAGCAGATTGAAGCTAC
1 GAATCTTATTTCCTC-GAAGTTGCAGTGGAGCAGATTGAAGATGC
* *
72612307 TAAGTCTAATCTTCCT-GAAGTTGCAGTGGAGCAGATTGAAGATGC
1 GAA-TCTTAT-TTCCTCGAAGTTGCAGTGGAGCAGATTGAAGATGC
** *
72612352 GAATCTTATTTCCTCGAAGTTGCAGTGGAATAGATTAAAGCTATGAGTTAC
1 GAATCTTATTTCCTCGAAGTTGCAGTGGAGCAGATTGAAG--AT--G---C
* * * * *
72612403 AAATCTTATCTCCTCGAAGTTGCAGAT-GAGAAGATTGTAGACGC
1 GAATCTTATTTCCTCGAAGTTGCAG-TGGAGCAGATTGAAGATGC
* * * * *
72612447 GAATCTTATCTT-CT-AAAGTTGCAGTGAAGCAGATTAAAGCTAC
1 GAATCTTAT-TTCCTCGAAGTTGCAGTGGAGCAGATTGAAGATGC
* *
72612490 -AA--GTATTATCGCTCTGAAGTTGCAGTGGAGTAGATTGAAG
1 GAATCTTATT-TC-CTC-GAAGTTGCAGTGGAGCAGATTGAAG
72612530 TCACAAATCC
Statistics
Matches: 302, Mismatches: 69, Indels: 72
0.68 0.16 0.16
Matches are distributed among these distances:
39 1 0.00
40 4 0.01
42 6 0.02
43 25 0.08
44 93 0.31
45 95 0.31
46 10 0.03
47 1 0.00
48 3 0.01
49 2 0.01
50 24 0.08
51 36 0.12
52 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (44 bp):
GAATCTTATTTCCTCGAAGTTGCAGTGGAGCAGATTGAAGATGC
Found at i:72612451 original size:184 final size:181
Alignment explanation
Indices: 72612048--72612538 Score: 471
Period size: 184 Copynumber: 2.7 Consensus size: 181
72612038 ACAGTCAAAG
* * * *
72612048 TTGCAGTGAGATGGATTGAAATCATTATGGTGAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGA
1 TTGCAGTGAGATAGATTG--ATCATGATAGCGAATCTTATC-TCCTGAAGTTGCAGTGGAGCAGA
** *
72612113 TTGAAGCCGCTAAGTCTAATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAACAAATCTTAT
63 TTGAAGCTACTAAGTCTAATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAACAAATCTTAT
*
72612178 CTCTCTGAAGTTACAGTAGAGCAGATTAAAGCTATAAATCCTATACCCCTGAAC
128 CTCTCTGAAGTTACAGTAGAACAGATTAAAGCTATAAATCCTATACCCCTGAAC
* * * *
72612232 TTGCAGTGGGATGGATTGAAATCATTATAGCGAATCTTATCTCCCTGAAGTTACAGTGGAGCAGA
1 TTGCAGTGAGATAGATTG--ATCATGATAGCGAATCTTATCT-CCTGAAGTTGCAGTGGAGCAGA
* * *
72612297 TTGAAGCTACTAAGTCTAATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-GCGAATCTTAT
63 TTGAAGCTACTAAGTCTAATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAACAAATCTTAT
* * * * * * *
72612361 TTC-CTCGAAGTTGCAGTGGAATAGATTAAAGCTATGAGTTACAAATCTTAT-CTCCTCGAAG
128 CTCTCT-GAAGTTACAGTAGAACAGATTAAAGC--T-A--T--AAATCCTATACCCCT-GAAC
* * * *
72612422 TTGCAGATGAGA-AGATTG-T-A-GA-CGCGAATCTTATCTTCTAAAGTTGCAGTGAAGCAGATT
1 TTGCAG-TGAGATAGATTGATCATGATAGCGAATCTTATCTCCTGAAGTTGCAGTGGAGCAGATT
* * * * * * *
72612482 AAAGCTAC-AAGTATTATCGCTCTGAAGTTGCAGTGGAGTAGATTGAAG-TCACAAATC
65 GAAGCTACTAAGTCTAATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAACAAATC
72612539 CCATACCCCT
Statistics
Matches: 260, Mismatches: 35, Indels: 26
0.81 0.11 0.08
Matches are distributed among these distances:
181 1 0.00
182 41 0.16
183 61 0.23
184 121 0.47
185 2 0.01
186 2 0.01
187 1 0.00
188 1 0.00
189 4 0.02
190 22 0.08
191 4 0.02
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (181 bp):
TTGCAGTGAGATAGATTGATCATGATAGCGAATCTTATCTCCTGAAGTTGCAGTGGAGCAGATTG
AAGCTACTAAGTCTAATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAACAAATCTTATCTC
TCTGAAGTTACAGTAGAACAGATTAAAGCTATAAATCCTATACCCCTGAAC
Found at i:72612452 original size:95 final size:93
Alignment explanation
Indices: 72612319--72612942 Score: 235
Period size: 95 Copynumber: 6.8 Consensus size: 93
72612309 AGTCTAATCT
* * *
72612319 TCCTGAAGTTGCAGTGGAGCAGATTGAAGATGCGAATCTTAT-TTCCTCGAAGTTGCAGTGGAA-
1 TCCTGAAGTTGCAGTGGAGAAGATTGAAGACGCGAATCTTATCTT-CT-AAAGTTGCAGT-GAAG
*
72612382 TAGATTAAAGCTATGAGTTACAAATCTTATC
63 CAGATTAAAGCTATGAGTTACAAATCTTATC
*
72612413 TCCTCGAAGTTGCAGAT-GAGAAGATTGTAGACGCGAATCTTATCTTCTAAAGTTGCAGTGAAGC
1 TCCT-GAAGTTGCAG-TGGAGAAGATTGAAGACGCGAATCTTATCTTCTAAAGTTGCAGTGAAGC
* *
72612477 AGATTAAAGC-------TACAAGTATTATC
64 AGATTAAAGCTATGAGTTACAAATCTTATC
* * * * * ** ** * *
72612500 GCTCTGAAGTTGCAGTGGAGTAGATTGAAGTCACAAATCCCATACCCCTGAAGTTGCAGTG-GGA
1 TC-CTGAAGTTGCAGTGGAGAAGATTGAAGACGCGAATCTTAT-CTTCTAAAGTTGCAGTGAAG-
* * * ** *
72612564 CGGATTAAAGTTATTA-TGGCGAATCTTATC
63 CAGATTAAAGCTATGAGTTACAAATCTTATC
* * * * * ** * * * *
72612594 TCCCTGAAGTTACAGTGGAGCAGATTAAAGCCAC-AAGTCTTATCCCCTTGAAGTTGCAATGGAC
1 T-CCTGAAGTTGCAGTGGAGAAGATTGAAGACGCGAA-TCTTATCTTC-TAAAGTTGCAGTGAAG
* *
72612658 CAGACTAAAG--AT-AG---CGAATCTTATC
63 CAGATTAAAGCTATGAGTTACAAATCTTATC
* * * * *** * * * *
72612683 TCTCTGAAATTGCAGTAGAGCAGATTAAAG-CTATAGACCTTATCTCCCTAAAGTTGTAGTGGAG
1 TC-CTGAAGTTGCAGTGGAGAAGATTGAAGACGCGA-ATCTTATCT-TCTAAAGTTGCAGTGAAG
72612747 CAG------G-T-TGAGTTTACAAATCTTATC
63 CAGATTAAAGCTATGAG-TTACAAATCTTATC
* ** * * * * *
72612771 TCCTTGAAGTTGCGGTGGACTAGATTGAAGCCACGAATCTTATCTCCCTGAAGTTGTAGTGGAA-
1 TCC-TGAAGTTGCAGTGGAGAAGATTGAAGACGCGAATCTTATCT-TCTAAAGTTGCAGT-GAAG
* *
72612835 TAGATTAAAGCTACGAGTTACAAATCTTATC
63 CAGATTAAAGCTATGAGTTACAAATCTTATC
* * * * * * * * ** *
72612866 TCCCCGAAGTTACAGAGGAGTAGATTGTAGATGTGAATCTTATCTCCCTAAAGTTGCAACGGAGC
1 T-CCTGAAGTTGCAGTGGAGAAGATTGAAGACGCGAATCTTATCT-TCTAAAGTTGCAGTGAAGC
*
72612931 AGATTGAAGCTA
64 AGATTAAAGCTA
72612943 CAAGTCTTAT
Statistics
Matches: 407, Mismatches: 81, Indels: 83
0.71 0.14 0.15
Matches are distributed among these distances:
83 2 0.00
84 2 0.00
86 1 0.00
87 43 0.11
88 83 0.20
89 62 0.15
90 3 0.01
91 1 0.00
92 2 0.00
93 9 0.02
94 86 0.21
95 105 0.26
96 8 0.02
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (93 bp):
TCCTGAAGTTGCAGTGGAGAAGATTGAAGACGCGAATCTTATCTTCTAAAGTTGCAGTGAAGCAG
ATTAAAGCTATGAGTTACAAATCTTATC
Found at i:72612667 original size:94 final size:89
Alignment explanation
Indices: 72612503--72612713 Score: 228
Period size: 94 Copynumber: 2.3 Consensus size: 89
72612493 TATTATCGCT
* * * * *
72612503 CTGAAGTTGCAGTGGAGTAGATTGAAGTCACAAATCCCATACCCCTGAAGTTGCAGTGGGACGGA
1 CTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAATCCCATACCCCTGAAGTTGCAATGGGACAGA
*
72612568 TTAAAGTTATTATGGCGAATCTTATCTCC
66 CTAAAG--A-TA--GCGAATCTTATCTCC
* * **
72612597 CTGAAGTTACAGTGGAGCAGATTAAAGCCACAAGTCTTAT-CCCCTTGAAGTTGCAAT-GGACCA
1 CTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAATCCCATACCCC-TGAAGTTGCAATGGGA-CA
*
72612660 GACTAAAGATAGCGAATCTTATCTCT
64 GACTAAAGATAGCGAATCTTATCTCC
* *
72612686 CTGAAATTGCAGTAGAGCAGATTAAAGC
1 CTGAAGTTGCAGTGGAGCAGATTAAAGC
72612714 TATAGACCTT
Statistics
Matches: 101, Mismatches: 14, Indels: 9
0.81 0.11 0.07
Matches are distributed among these distances:
89 39 0.39
91 2 0.02
92 1 0.01
93 7 0.07
94 52 0.51
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (89 bp):
CTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAATCCCATACCCCTGAAGTTGCAATGGGACAGA
CTAAAGATAGCGAATCTTATCTCC
Found at i:72612748 original size:44 final size:44
Alignment explanation
Indices: 72612449--72612973 Score: 187
Period size: 44 Copynumber: 11.6 Consensus size: 44
72612439 GTAGACGCGA
* *
72612449 ATCTTATCT-TCTAAAGTTGCAGTGAAGCAGATTAAAGCTACA-
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACAG
* * * * * * *
72612491 AGTATTATCGCTCTGAAGTTGCAGTGGAGTAGATTGAAG-TCACAA
1 A-TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCT-ACAG
** * * * *
72612536 ATCCCATAC-CCCTGAAGTTGCAGTGG-GACGGATTAAAGTTATTATGGCG
1 ATCTTAT-CTCCCTAAAGTTGCAGTGGAG-CAGATTAAAGCTA-CA----G
* * *
72612585 AATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCACA-
1 -ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACAG
* * * * *
72612629 AGTCTTATC-CCCTTGAAGTTGCAATGGACCAGACTAAAGATAGC-G
1 A-TCTTATCTCCC-TAAAGTTGCAGTGGAGCAGATTAAAGCTA-CAG
* * *
72612674 AATCTTATCTCTCTGAAA-TTGCAGTAGAGCAGATTAAAGCTATAG
1 -ATCTTATCTCCCT-AAAGTTGCAGTGGAGCAGATTAAAGCTACAG
* * * * * *
72612719 ACCTTATCTCCCTAAAGTTGTAGTGGAGCAGGTT-GAGTTTACAA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAG-CTACAG
* * * * *
72612763 ATCTTATCTCCTTGAAGTTGCGGTGGA-CTAGATTGAAGCCAC-G
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGC-AGATTAAAGCTACAG
* * **
72612806 AATCTTATCTCCCTGAAGTTGTAGTGGAATAGATTAAAGCTACGAG
1 -ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTAC-AG
** * * * ** * **
72612852 TTACAAATCTTATCTCCCCGAAGTTACAGAGGAGTAGATTGTAGAT-GTG
1 ------ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACAG
** *
72612901 AATCTTATCTCCCTAAAGTTGCAACGGAGCAGATTGAAGCTACA-
1 -ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACAG
* * * *
72612945 AGTCTTATCTCTCTGAAGTTACAGCGGAG
1 A-TCTTATCTCCCTAAAGTTGCAGTGGAG
72612974 TGGATCGAAG
Statistics
Matches: 360, Mismatches: 85, Indels: 74
0.69 0.16 0.14
Matches are distributed among these distances:
42 1 0.00
43 19 0.05
44 231 0.64
45 35 0.10
46 6 0.02
49 3 0.01
50 31 0.09
51 34 0.09
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (44 bp):
ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACAG
Found at i:72612906 original size:227 final size:225
Alignment explanation
Indices: 72612267--72612973 Score: 667
Period size: 227 Copynumber: 3.1 Consensus size: 225
72612257 TATAGCGAAT
* * *
72612267 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGCTACTAAGTCTAATCTTCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC-AAATCTAATC-TCCTGAAGTTGCA
* * *
72612332 GTGGAGCAGATTGAAGATGCGAATCTTAT-TTCCTCGAAGTTGCAGTGGAATAGATTAAAGCTAT
64 GTGGA-CAGATTGAAGATACGAATCTTATCTCCCT-GAAGTTGCAGTGGAATAGATTAAAGCTAC
* * *
72612396 GAGTTACAAATCTTATCTCCTCGAAGTTGCAGATGAGAAGATTGTAGACGCGAATCTTATCT-TC
127 GAGTTACAAATCTTATCTCCCCGAAGTTGCAGAGGAGAAGATTGTAGATGCGAATCTTATCTCTC
72612460 TAAAGTTGCAGTGAAGCAGATTAAAGCTACAAGTA
192 TAAAGTTGCAGTG-AGCAGATTAAAGCTACAAGTA
* * * * ** *
72612495 -TTATCGCTCTGAAGTTGCAGTGGAGTAGATTGAAGTCACAAATCCCATACCCCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTAAT-CTCCTGAAGTTGCAG
* * * **
72612559 TGGGACGGATTAAAGTTATTATGGCGAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAG
65 T-GGACAGATTGAAG--A-TA---CGAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTAAAG
* * ** * **
72612624 C--C-----ACAAGTCTTATC-CCCTTGAAGTTGCA-ATGGACCAGACTAAAGATAGCGAATCTT
123 CTACGAGTTACAAATCTTATCTCCC-CGAAGTTGCAGA-GGAGAAGATTGTAGAT-GCGAATCTT
*
72612680 ATCTCTCTGAAA-TTGCAGTAGAGCAGATTAAAGCTA-TAG-A
185 ATCTCTCT-AAAGTTGCAGT-GAGCAGATTAAAGCTACAAGTA
* * * *
72612720 CCTTATCTCCCTAAAGTTGTAGTGGAGCAGGTTG-AGTTTACAAATCTTATCTCCTTGAAGTTGC
1 -CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TTACAAATCTAATCTCC-TGAAGTTGC
* ** *
72612784 GGTGGACTAGATTGAAGCCACGAATCTTATCTCCCTGAAGTTGTAGTGGAATAGATTAAAGCTAC
63 AGTGGAC-AGATTGAAGATACGAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTAC
* * * *
72612849 GAGTTACAAATCTTATCTCCCCGAAGTTACAGAGGAGTAGATTGTAGATGTGAATCTTATCTCCC
127 GAGTTACAAATCTTATCTCCCCGAAGTTGCAGAGGAGAAGATTGTAGATGCGAATCTTATCTCTC
*
72612914 TAAAGTTGCAACG-GAGCAGATTGAAGCTACAAGT-
192 TAAAGTTGC-A-GTGAGCAGATTAAAGCTACAAGTA
* * *
72612948 CTTATCTCTCTGAAGTTACAGCGGAG
1 CTTATCTCCCTGAAGTTGCAGTGGAG
72612974 TGGATCGAAG
Statistics
Matches: 380, Mismatches: 65, Indels: 69
0.74 0.13 0.13
Matches are distributed among these distances:
221 38 0.10
223 1 0.00
224 4 0.01
225 30 0.08
226 55 0.14
227 171 0.45
228 38 0.10
229 6 0.02
232 33 0.09
233 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (225 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTAATCTCCTGAAGTTGCAGT
GGACAGATTGAAGATACGAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACGAGT
TACAAATCTTATCTCCCCGAAGTTGCAGAGGAGAAGATTGTAGATGCGAATCTTATCTCTCTAAA
GTTGCAGTGAGCAGATTAAAGCTACAAGTA
Found at i:72618014 original size:21 final size:21
Alignment explanation
Indices: 72617975--72618050 Score: 68
Period size: 21 Copynumber: 3.6 Consensus size: 21
72617965 AGAATCTAAG
72617975 TTGTGTGAAAGAGTG-ACACGC
1 TTGTGTGAAAGAG-GCACACGC
72617996 TTGTGTGAAAGAGGCACACGGCC
1 TTGTGTGAAAGAGGCACAC-G-C
* * *
72618019 ATGTG-G-TAGAGACACACGC
1 TTGTGTGAAAGAGGCACACGC
*
72618038 TTGTGTGATAGAG
1 TTGTGTGAAAGAG
72618051 TTACATGGCC
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
19 5 0.11
20 3 0.07
21 31 0.67
22 2 0.04
23 5 0.11
ACGTcount: A:0.28, C:0.16, G:0.34, T:0.22
Consensus pattern (21 bp):
TTGTGTGAAAGAGGCACACGC
Found at i:72624108 original size:40 final size:40
Alignment explanation
Indices: 72623960--72624171 Score: 243
Period size: 40 Copynumber: 5.3 Consensus size: 40
72623950 CATTTGAATG
* * *
72623960 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * * *
72624000 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
72624040 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
*
72624080 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* * ** *
72624120 ATA-CCTGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCC-GGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
72624160 ATATCC-GGCTAA
1 ATATCCGGGCTAA
72624172 ATTCCGAAGA
Statistics
Matches: 156, Mismatches: 11, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
39 9 0.06
40 142 0.91
41 5 0.03
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:72627565 original size:23 final size:23
Alignment explanation
Indices: 72627539--72627629 Score: 73
Period size: 23 Copynumber: 4.0 Consensus size: 23
72627529 TCAGCTCGTA
72627539 ATTCAACTAAT-TGGAGCTTACTG
1 ATTCAACTAATAT-GAGCTTACTG
* *
72627562 ATTCAGCTCATATGAGCTTACTG
1 ATTCAACTAATATGAGCTTACTG
* *
72627585 -TTCAGCTCGATA-GAGCTTACTG
1 ATTCAACT-AATATGAGCTTACTG
* *
72627607 TTTCAGCTCAATA-GAGCTTACTG
1 ATTCAACT-AATATGAGCTTACTG
72627630 TTTATTAGCT
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
22 17 0.28
23 43 0.70
24 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (23 bp):
ATTCAACTAATATGAGCTTACTG
Found at i:72627630 original size:23 final size:22
Alignment explanation
Indices: 72627552--72627632 Score: 119
Period size: 23 Copynumber: 3.6 Consensus size: 22
72627542 CAACTAATTG
*
72627552 GAGCTTACTGATTCAGCTCATA
1 GAGCTTACTGTTTCAGCTCATA
72627574 TGAGCTTACTG-TTCAGCTCGATA
1 -GAGCTTACTGTTTCAGCTC-ATA
72627597 GAGCTTACTGTTTCAGCTCAATA
1 GAGCTTACTGTTTCAGCTC-ATA
72627620 GAGCTTACTGTTT
1 GAGCTTACTGTTT
72627633 ATTAGCTCCG
Statistics
Matches: 55, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
22 18 0.33
23 37 0.67
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (22 bp):
GAGCTTACTGTTTCAGCTCATA
Found at i:72627823 original size:20 final size:20
Alignment explanation
Indices: 72627798--72627842 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
72627788 AATAAGTTAA
*
72627798 GTTGAAATGGATGAATTACT
1 GTTGAAATGAATGAATTACT
72627818 GTTGAAATGAATGAATTACT
1 GTTGAAATGAATGAATTACT
*
72627838 ATTGA
1 GTTGA
72627843 TACGGAAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.38, C:0.04, G:0.22, T:0.36
Consensus pattern (20 bp):
GTTGAAATGAATGAATTACT
Found at i:72633262 original size:11 final size:11
Alignment explanation
Indices: 72633246--72633270 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
72633236 TCTTAGTTGC
72633246 TAGTGAAATGA
1 TAGTGAAATGA
72633257 TAGTGAAATGA
1 TAGTGAAATGA
72633268 TAG
1 TAG
72633271 ACACTAGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.28, T:0.28
Consensus pattern (11 bp):
TAGTGAAATGA
Found at i:72636742 original size:40 final size:40
Alignment explanation
Indices: 72636659--72636874 Score: 273
Period size: 40 Copynumber: 5.5 Consensus size: 40
72636649 CAACCAAGTA
** *
72636659 CCTTCGGGGTTTAG-CCGGATATAGCT-ACT-GCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
72636697 CCTTCGGGACTTAGCTCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72636737 CCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAAC-TCGCACAAATG
* *
72636777 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
72636817 CCTTCGGGACTT-GCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
72636856 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
72636875 TTATCATCCA
Statistics
Matches: 157, Mismatches: 14, Indels: 12
0.86 0.08 0.07
Matches are distributed among these distances:
38 14 0.09
39 45 0.29
40 96 0.61
41 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72644876 original size:40 final size:40
Alignment explanation
Indices: 72644825--72644972 Score: 219
Period size: 40 Copynumber: 3.7 Consensus size: 40
72644815 AGCTACTGCT
72644825 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
72644865 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * *
72644905 CCAATGCCTTCGGGACTT-GCCCGG-AACTAGTCACTAGCG
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
72644944 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
72644973 CATCCAAATA
Statistics
Matches: 97, Mismatches: 8, Indels: 6
0.87 0.07 0.05
Matches are distributed among these distances:
38 1 0.01
39 32 0.33
40 63 0.65
41 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:72644928 original size:79 final size:79
Alignment explanation
Indices: 72644793--72644968 Score: 225
Period size: 79 Copynumber: 2.2 Consensus size: 79
72644783 CAACCAAGTA
** * *
72644793 CCTTCGGGGTTTAG-CCGGATATAGCTACTGCTCAAATGCCTTCGGGACTTAGCCCGGTTA-TAG
1 CCTTCGGGACTTAGCCCGGATATAGCTACTGCACAAATGCCTTCGGGACTTAGCCCGG-AACTAG
*
72644856 TAACTCGCACAAATG
65 TAACTAGCACAAATG
*
72644871 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACCAATGCCTTCGGGACTT-GCCCGGAACTA
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACT-GCACAAATGCCTTCGGGACTTAGCCCGGAACTA
* *
72644934 GTCACTAGCGCAAATG
64 GTAACTAGCACAAATG
72644950 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
72644969 TTATCATCCA
Statistics
Matches: 86, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
78 14 0.16
79 53 0.62
80 19 0.22
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGT
AACTAGCACAAATG
Found at i:72649665 original size:18 final size:19
Alignment explanation
Indices: 72649642--72649677 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
72649632 GAAATTTCAC
72649642 GAAAAAAAAGGA-AAGAAA
1 GAAAAAAAAGGAGAAGAAA
72649660 GAAAAAAAAGGAGAAGAA
1 GAAAAAAAAGGAGAAGAA
72649678 GCAGCCTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (19 bp):
GAAAAAAAAGGAGAAGAAA
Found at i:72652014 original size:58 final size:58
Alignment explanation
Indices: 72651924--72652040 Score: 234
Period size: 58 Copynumber: 2.0 Consensus size: 58
72651914 TTAGTAAACC
72651924 TATACTTAGTGCATTCTACTAACATCATCGAAGATGAAGAAAATAAATAGTCAGAGTA
1 TATACTTAGTGCATTCTACTAACATCATCGAAGATGAAGAAAATAAATAGTCAGAGTA
72651982 TATACTTAGTGCATTCTACTAACATCATCGAAGATGAAGAAAATAAATAGTCAGAGTA
1 TATACTTAGTGCATTCTACTAACATCATCGAAGATGAAGAAAATAAATAGTCAGAGTA
72652040 T
1 T
72652041 TGACCTATAC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.43, C:0.14, G:0.15, T:0.28
Consensus pattern (58 bp):
TATACTTAGTGCATTCTACTAACATCATCGAAGATGAAGAAAATAAATAGTCAGAGTA
Found at i:72657214 original size:45 final size:45
Alignment explanation
Indices: 72657140--72657225 Score: 109
Period size: 45 Copynumber: 1.9 Consensus size: 45
72657130 TTTTCCACCA
* *
72657140 AGTATAAATAATTAACAATAAATACTATGTGATTTACTTAAATTT
1 AGTATAAATAATTAACAATAAATAATATGTAATTTACTTAAATTT
* * * * *
72657185 AGTATAAATAATTTATATTATATAATATGTAATTTAGTTAA
1 AGTATAAATAATTAACAATAAATAATATGTAATTTACTTAA
72657226 TTAGACAATG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 34 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (45 bp):
AGTATAAATAATTAACAATAAATAATATGTAATTTACTTAAATTT
Found at i:72657710 original size:12 final size:12
Alignment explanation
Indices: 72657693--72657726 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
72657683 CGGCTCGCCC
72657693 ATATTAATTTTT
1 ATATTAATTTTT
*
72657705 ATATTATTTTTT
1 ATATTAATTTTT
72657717 ATA-TAATTTT
1 ATATTAATTTT
72657727 AAAAAAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:72657750 original size:18 final size:18
Alignment explanation
Indices: 72657729--72657767 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
72657719 ATAATTTTAA
*
72657729 AAAAATA-TATAAACCATC
1 AAAAATACTA-AAAACATC
72657747 AAAAATACTAAAAACATC
1 AAAAATACTAAAAACATC
72657765 AAA
1 AAA
72657768 TAAATATTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 17 0.89
19 2 0.11
ACGTcount: A:0.67, C:0.15, G:0.00, T:0.18
Consensus pattern (18 bp):
AAAAATACTAAAAACATC
Found at i:72657979 original size:11 final size:11
Alignment explanation
Indices: 72657948--72657987 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
72657938 ACAATAACAA
*
72657948 CAAAATAGTAG
1 CAAAATAATAG
*
72657959 CAAGATAATAG
1 CAAAATAATAG
*
72657970 TAAAATAATAG
1 CAAAATAATAG
72657981 CAAAATA
1 CAAAATA
72657988 GGGAGAAAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.60, C:0.07, G:0.12, T:0.20
Consensus pattern (11 bp):
CAAAATAATAG
Found at i:72658755 original size:12 final size:12
Alignment explanation
Indices: 72658738--72658762 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72658728 ATAATTTAAA
72658738 AATTAAAAAATT
1 AATTAAAAAATT
72658750 AATTAAAAAATT
1 AATTAAAAAATT
72658762 A
1 A
72658763 TAACCCAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AATTAAAAAATT
Found at i:72661140 original size:27 final size:26
Alignment explanation
Indices: 72661099--72661178 Score: 79
Period size: 26 Copynumber: 3.0 Consensus size: 26
72661089 AAAGTAACCA
*
72661099 ATAAAACAATTTAAAATGAATAATAC
1 ATAAAACAATTTAAAATAAATAATAC
* **
72661125 ATAAAATAAGTTTAAAATAAATAATGT
1 ATAAAACAA-TTTAAAATAAATAATAC
* * **
72661152 ATAAAGCATTTTAAAATCTATAATAC
1 ATAAAACAATTTAAAATAAATAATAC
72661178 A
1 A
72661179 CAAAGCAAAT
Statistics
Matches: 42, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 22 0.52
27 20 0.48
ACGTcount: A:0.57, C:0.06, G:0.05, T:0.31
Consensus pattern (26 bp):
ATAAAACAATTTAAAATAAATAATAC
Found at i:72662996 original size:31 final size:31
Alignment explanation
Indices: 72662950--72663017 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
72662940 AAAAATATAG
* * * *
72662950 AAATTAGACTCTTTTTAAAAGGTTGATGGTT
1 AAATTTGACTATTTTTAAAAGGTTGAGGGTC
72662981 AAATTTGACTATTTTTAAAAGGTTGAGGGTC
1 AAATTTGACTATTTTTAAAAGGTTGAGGGTC
72663012 AAATTT
1 AAATTT
72663018 ACCATTATAC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.34, C:0.06, G:0.19, T:0.41
Consensus pattern (31 bp):
AAATTTGACTATTTTTAAAAGGTTGAGGGTC
Found at i:72663187 original size:3 final size:3
Alignment explanation
Indices: 72663181--72663211 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
72663171 TTTGATGATA
72663181 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
72663212 TTTGTAGTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:72671849 original size:41 final size:41
Alignment explanation
Indices: 72671774--72671892 Score: 145
Period size: 41 Copynumber: 2.9 Consensus size: 41
72671764 ACAATTTAGT
* *
72671774 CCTTAGCCCATC-TCAG-TACAGTATCAAATATGTAGTAGGA
1 CCTTAGCCCATCAT-AGTTTCAGTGTCAAATATGTAGTAGGA
*
72671814 CCTTAGCCCATCATAGTTTCAGTGTCAAATATGTAGTAGGG
1 CCTTAGCCCATCATAGTTTCAGTGTCAAATATGTAGTAGGA
* * *
72671855 CCTTAGCCCATCACAGTATCAGTGGC-AATCATGTAGTA
1 CCTTAGCCCATCATAGTTTCAGTGTCAAAT-ATGTAGTA
72671893 TTTAGTAACA
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
40 17 0.24
41 53 0.76
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (41 bp):
CCTTAGCCCATCATAGTTTCAGTGTCAAATATGTAGTAGGA
Found at i:72675116 original size:13 final size:13
Alignment explanation
Indices: 72675098--72675122 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72675088 TTAGTAGCTT
72675098 AATTGATTATTTC
1 AATTGATTATTTC
72675111 AATTGATTATTT
1 AATTGATTATTT
72675123 GTGGCTGAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.08, T:0.56
Consensus pattern (13 bp):
AATTGATTATTTC
Found at i:72678666 original size:37 final size:37
Alignment explanation
Indices: 72678610--72678684 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
72678600 ACATAAGTAT
*
72678610 GCATCAAATTTACTGTCACTAGCCATTCCAATGGCTA
1 GCATCAAATTTACTATCACTAGCCATTCCAATGGCTA
*
72678647 GCATTAAATTTACTATCACTAGCCATTCCAATGGCTA
1 GCATCAAATTTACTATCACTAGCCATTCCAATGGCTA
72678684 G
1 G
72678685 TTACAACCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (37 bp):
GCATCAAATTTACTATCACTAGCCATTCCAATGGCTA
Found at i:72689728 original size:46 final size:46
Alignment explanation
Indices: 72689678--72689853 Score: 144
Period size: 46 Copynumber: 3.8 Consensus size: 46
72689668 TGGTTGAGCA
* *
72689678 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
72689724 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * * *
72689769 CATCCGAACTCGTTGAGTTGAGTCCGAGTTAACCTATGGATGCGAACG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
72689817 CCCGAGCTCATTGAGTTGGGTCCTAGTTCGCTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
72689854 GCGGGTTACA
Statistics
Matches: 99, Mismatches: 22, Indels: 18
0.71 0.16 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 56 0.57
47 27 0.27
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72689834 original size:93 final size:93
Alignment explanation
Indices: 72689675--72689846 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
72689665 GGATGGTTGA
* * * * *
72689675 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACCTATGGATGCGAACGCCCGAACTCATTGAGT
72689740 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
72689768 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACCTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACCTATGGATGCGAACGCCCGAACTCATTGAGT
* *
72689833 TGGGTCCTAGTTCG
66 TGAGTCCGAGTTCG
72689847 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACCTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:72719517 original size:79 final size:81
Alignment explanation
Indices: 72719381--72719563 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
72719371 TCGAATGATG
* *
72719381 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
72719445 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
72719460 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
72719522 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
72719540 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
72719564 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:72719579 original size:40 final size:40
Alignment explanation
Indices: 72719382--72719565 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
72719372 CGAATGATGT
* * * *
72719382 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
72719422 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
72719462 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
72719500 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
72719541 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
72719566 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:72719587 original size:79 final size:79
Alignment explanation
Indices: 72719434--72719598 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
72719424 GGACTAAGAT
* **
72719434 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
72719499 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
72719513 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
72719576 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
72719592 CCGAAGG
1 CCGAAGG
72719599 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:72725425 original size:79 final size:81
Alignment explanation
Indices: 72725289--72725471 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
72725279 TCGAATGATG
* *
72725289 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
72725353 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
72725368 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
72725430 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
72725448 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
72725472 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:72725487 original size:40 final size:40
Alignment explanation
Indices: 72725290--72725473 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
72725280 CGAATGATGT
* * * *
72725290 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
72725330 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
72725370 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
72725408 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
72725449 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
72725474 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:72725495 original size:79 final size:79
Alignment explanation
Indices: 72725342--72725506 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
72725332 GGACTAAGAT
* **
72725342 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
72725407 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
72725421 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
72725484 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
72725500 CCGAAGG
1 CCGAAGG
72725507 TATGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:72727595 original size:26 final size:26
Alignment explanation
Indices: 72727559--72727611 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
72727549 ATCTTGTACA
72727559 CCAGAAGAATGTCTGAAATGTGCCGT
1 CCAGAAGAATGTCTGAAATGTGCCGT
72727585 CCAGAAGAATGTCTGAAATGTGCCGT
1 CCAGAAGAATGTCTGAAATGTGCCGT
72727611 C
1 C
72727612 TCACTGCTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (26 bp):
CCAGAAGAATGTCTGAAATGTGCCGT
Found at i:72738170 original size:29 final size:27
Alignment explanation
Indices: 72738108--72738171 Score: 65
Period size: 29 Copynumber: 2.3 Consensus size: 27
72738098 AGTTTTGTAT
* *
72738108 TATTTATATATTTAGAATTTAATTTTC
1 TATTTTTATATTTAGAATTTAATTCTC
* *
72738135 GATTTTTTATTTTTAAGAATTTAATCTCTC
1 TA-TTTTTATATTT-AGAATTTAAT-TCTC
72738165 TATTTTT
1 TATTTTT
72738172 TGAATTTAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 1 0.03
28 9 0.31
29 15 0.52
30 4 0.14
ACGTcount: A:0.28, C:0.06, G:0.05, T:0.61
Consensus pattern (27 bp):
TATTTTTATATTTAGAATTTAATTCTC
Found at i:72738821 original size:31 final size:29
Alignment explanation
Indices: 72738762--72738822 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 29
72738752 GATCACCTTC
* *
72738762 AACAGCCTTGAATGAATAGATGAATGAAG
1 AACAACCTTGAATGAATAGAAGAATGAAG
72738791 AACAACCTTGAAATGAATTAGAAGAATGAAG
1 AACAACCTTG-AATGAA-TAGAAGAATGAAG
72738822 A
1 A
72738823 CCATCTACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 9 0.32
30 6 0.21
31 13 0.46
ACGTcount: A:0.49, C:0.10, G:0.21, T:0.20
Consensus pattern (29 bp):
AACAACCTTGAATGAATAGAAGAATGAAG
Found at i:72740937 original size:19 final size:19
Alignment explanation
Indices: 72740900--72740937 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
72740890 CATGAAGGAA
*
72740900 GCAGCAACAGAAGCGAAAC
1 GCAGCAACAGAAGCAAAAC
72740919 GCAGCAACAGTAA-CAAAAC
1 GCAGCAACAG-AAGCAAAAC
72740938 AGCAATAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.50, C:0.26, G:0.21, T:0.03
Consensus pattern (19 bp):
GCAGCAACAGAAGCAAAAC
Found at i:72742412 original size:33 final size:32
Alignment explanation
Indices: 72742374--72742440 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 32
72742364 TTTATAATTA
72742374 TTATTTTCAT-AATATTATTTA-TATTAAATATTT
1 TTATTTT-ATGAATATTATTTACT-TT-AATATTT
*
72742407 TTATTTTATGTATATTATTTACTTTAATATTT
1 TTATTTTATGAATATTATTTACTTTAATATTT
72742439 TT
1 TT
72742441 CTATTATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
32 11 0.35
33 19 0.61
34 1 0.03
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.64
Consensus pattern (32 bp):
TTATTTTATGAATATTATTTACTTTAATATTT
Found at i:72742617 original size:22 final size:20
Alignment explanation
Indices: 72742592--72742636 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 20
72742582 TATTACTTAG
72742592 TCAAATTGTTTCATTATTTATT
1 TCAAATTGTTTCA-TA-TTATT
*
72742614 TCAAATTGTTTTATATTATT
1 TCAAATTGTTTCATATTATT
72742634 TCA
1 TCA
72742637 TTTTTTGATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 8 0.36
21 2 0.09
22 12 0.55
ACGTcount: A:0.29, C:0.09, G:0.04, T:0.58
Consensus pattern (20 bp):
TCAAATTGTTTCATATTATT
Found at i:72758664 original size:48 final size:48
Alignment explanation
Indices: 72758576--72758673 Score: 110
Period size: 48 Copynumber: 2.0 Consensus size: 48
72758566 AGTCTACATA
* * * * *
72758576 CCGATGCCATATCCCAGATATGGTCTTATACGAAGTCTCATGTCGGTG
1 CCGATGCCATATCCCAGACATGGTCTTATACAAAGCCTCATATCGATG
*
72758624 CCGATGCCATGTCCCAGACATGGTC-T-TACAATAGACCTCATATCGATG
1 CCGATGCCATATCCCAGACATGGTCTTATACAA-AG-CCTCATATCGATG
72758672 CC
1 CC
72758674 ATGTCCCAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
46 4 0.10
47 3 0.07
48 35 0.83
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (48 bp):
CCGATGCCATATCCCAGACATGGTCTTATACAAAGCCTCATATCGATG
Found at i:72758692 original size:90 final size:90
Alignment explanation
Indices: 72758539--72758706 Score: 209
Period size: 90 Copynumber: 1.9 Consensus size: 90
72758529 GAACGCCAAA
* *
72758539 GCCATGTCACCGACATGGTCTAACATGAGTCTACATACCGATGCCATATCCCAGATATGGTCTTA
1 GCCATGTCACCGACATGGTCTAACATGAGCCTACATACCGATGCCATATCCCAAATATGGTCTTA
* *
72758604 TACGAAGTCTCATGTCGGTGCCGAT
66 CACGAAATCTCATGTCGGTGCCGAT
* * *
72758629 GCCATGTC-CCAGACATGGTCTTACAAT-AGACCT-CATATCGATGCCATGTCCCAAACT-TGGT
1 GCCATGTCACC-GACATGGTCTAAC-ATGAG-CCTACATACCGATGCCATATCCCAAA-TATGGT
72758690 CTTACACGAAATCTCAT
62 CTTACACGAAATCTCAT
72758707 ATCAACGCCA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
89 2 0.03
90 60 0.90
91 5 0.07
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (90 bp):
GCCATGTCACCGACATGGTCTAACATGAGCCTACATACCGATGCCATATCCCAAATATGGTCTTA
CACGAAATCTCATGTCGGTGCCGAT
Found at i:72758706 original size:42 final size:42
Alignment explanation
Indices: 72758625--72758757 Score: 142
Period size: 42 Copynumber: 3.2 Consensus size: 42
72758615 ATGTCGGTGC
* * * *
72758625 CGATGCCATGTCCCAGACATGGTCTTACAATAGACCTCATAT
1 CGATGCCATGTCCCAGACTTGGTCTTACAAGAAATCTCATAT
* *
72758667 CGATGCCATGTCCCAAACTTGGTCTTACACGAAATCTCATAT
1 CGATGCCATGTCCCAGACTTGGTCTTACAAGAAATCTCATAT
* * * * * *
72758709 CAACGCCATATCCCAGA-TATGGTCTTACATGAAATCACATAC
1 CGATGCCATGTCCCAGACT-TGGTCTTACAAGAAATCTCATAT
72758751 CGATGCC
1 CGATGCC
72758758 GATTCCATAT
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
41 1 0.01
42 74 0.99
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (42 bp):
CGATGCCATGTCCCAGACTTGGTCTTACAAGAAATCTCATAT
Found at i:72766135 original size:42 final size:42
Alignment explanation
Indices: 72766056--72766138 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
72766046 GTCGGTGCCA
* *
72766056 ATGCCATGTCCCAGACATGGTCTTACACTGGACCTCATATCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGAACCTCATATCG
*
72766098 ATGCCATGTCCCAAACATGGTCTTACAC-GAAATCTCATATC
1 ATGCCATGTCCCAAACATGGTCTTACACTG-AACCTCATATC
72766139 AACGCCATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 1 0.03
42 36 0.97
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.27
Consensus pattern (42 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGAACCTCATATCG
Found at i:72766289 original size:49 final size:48
Alignment explanation
Indices: 72766172--72766311 Score: 167
Period size: 48 Copynumber: 2.9 Consensus size: 48
72766162 TTACTGAAAT
* * * * *
72766172 CACATA-CAGATGCCGATGCCATATCCCAGATATAGTCTTACACTGGCC
1 CACATATCA-ATGCCTATGCCATGTCCCAAACATGGTCTTACACTGGCC
*
72766220 CACATATCAATG-CTGATGCCATGTCCCAAACATGGTCTTACACTGGCT
1 CACATATCAATGCCT-ATGCCATGTCCCAAACATGGTCTTACACTGGCC
* *
72766268 CTCATTTCATATGCCTATGCCATGTCCCAAACATGGTCTTACAC
1 CACATATCA-ATGCCTATGCCATGTCCCAAACATGGTCTTACAC
72766312 ATGATCTCAT
Statistics
Matches: 80, Mismatches: 8, Indels: 7
0.84 0.08 0.07
Matches are distributed among these distances:
47 1 0.01
48 44 0.55
49 33 0.41
50 2 0.03
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (48 bp):
CACATATCAATGCCTATGCCATGTCCCAAACATGGTCTTACACTGGCC
Found at i:72770141 original size:16 final size:15
Alignment explanation
Indices: 72770120--72770167 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
72770110 GATGGGAATA
72770120 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
72770136 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
72770151 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
72770167 A
1 A
72770168 ATAATTAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:72770150 original size:8 final size:8
Alignment explanation
Indices: 72770116--72770167 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
72770106 CAATGATGGG
*
72770116 AATAATAA
1 AATATTAA
72770124 AATATATAA
1 AATAT-TAA
72770133 AATA-TAA
1 AATATTAA
72770140 AATATTAA
1 AATATTAA
*
72770148 AATATCAA
1 AATATTAA
*
72770156 AATATTAG
1 AATATTAA
72770164 AATA
1 AATA
72770168 ATAATTAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:72770167 original size:24 final size:24
Alignment explanation
Indices: 72770115--72770171 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
72770105 ACAATGATGG
*
72770115 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
72770139 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
72770163 GAATAATAA
1 GAATAATAA
72770172 TTAATATTGA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:72770329 original size:23 final size:19
Alignment explanation
Indices: 72770278--72770331 Score: 54
Period size: 23 Copynumber: 2.6 Consensus size: 19
72770268 ATACTACATC
72770278 AATATGTACATATATAAAA
1 AATATGTACATATATAAAA
**
72770297 AATAAATACATGATAATATTAAA
1 AATATGTACAT-AT-ATA--AAA
72770320 AATATGTACATA
1 AATATGTACATA
72770332 ATATCGTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
19 9 0.33
20 2 0.07
21 3 0.11
22 1 0.04
23 12 0.44
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (19 bp):
AATATGTACATATATAAAA
Found at i:72770434 original size:25 final size:25
Alignment explanation
Indices: 72770400--72770533 Score: 93
Period size: 25 Copynumber: 5.6 Consensus size: 25
72770390 AGAAAAAAAT
72770400 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * *
72770425 ATATATAAATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
* * *
72770450 ATATATATACGTAATATAAAATTTAA-
1 ATATATA-A-ATAATATAATATTAAAG
** *
72770476 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
72770498 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
72770521 AAATAT-AATAATA
1 ATATATAAATAATA
72770534 ACAAAAAAAG
Statistics
Matches: 84, Mismatches: 19, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
21 3 0.04
22 13 0.15
23 18 0.21
24 5 0.06
25 33 0.39
26 2 0.02
27 10 0.12
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:72771058 original size:30 final size:30
Alignment explanation
Indices: 72771024--72771091 Score: 118
Period size: 30 Copynumber: 2.3 Consensus size: 30
72771014 TGGAGAATGT
72771024 GTGGCTAGTGGAGTTGGAGGTGGAAAAAGA
1 GTGGCTAGTGGAGTTGGAGGTGGAAAAAGA
* *
72771054 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
1 GTGGCTAGTGGAGTTGGAGGTGGAAAAAGA
72771084 GTGGCTAG
1 GTGGCTAG
72771092 GTTTTTTTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.25, C:0.04, G:0.49, T:0.22
Consensus pattern (30 bp):
GTGGCTAGTGGAGTTGGAGGTGGAAAAAGA
Found at i:72771999 original size:72 final size:72
Alignment explanation
Indices: 72771763--72772015 Score: 391
Period size: 73 Copynumber: 3.5 Consensus size: 72
72771753 ACATGTGAAC
* *
72771763 TGAGGCTCAACTCACTTT-TCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCT
1 TGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
* *
72771827 CAGCGTGTCC
63 CAACGTGTCT
* *
72771837 TGAGGCTCAACTCATTTCTCGCAATATGGGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCA
72771902 ACGTGTCT
65 ACGTGTCT
*
72771910 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAATAGAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
*
72771975 TGTGTCT
66 CGTGTCT
72771982 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
72772016 TTCTTTCAAA
Statistics
Matches: 167, Mismatches: 10, Indels: 6
0.91 0.05 0.03
Matches are distributed among these distances:
72 67 0.40
73 71 0.43
74 29 0.17
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (72 bp):
TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
CGTGTCT
Found at i:72772097 original size:88 final size:87
Alignment explanation
Indices: 72771948--72772195 Score: 275
Period size: 88 Copynumber: 2.8 Consensus size: 87
72771938 AGTTGAATTT
* * ** **
72771948 TGAAAATAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 TGAAAACAGAAATTGAAAATACCTCGGTGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
72772013 TGA-TTCTTTCAAAAACATAATAA
66 TGATTTCTTTCAAAAACA-AA-AA
* *
72772036 TGAAAACAGAAATGGAAAATACCTCGGTGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TGAAAACAGAAATTGAAAATACCTCGGTGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
72772101 TGATTTTTTTTTGAAAAACAGAAA
66 TGA--TTTCTTTCAAAAACAAAAA
* ** *
72772125 TCAAAAGGC-TTAATTGAAAATACCTCGGCGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
1 TGAAAA--CAGAAATTGAAAATACCTC-G-GTGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
72772189 GAGTTGA
62 GAGTTGA
72772196 AATTAAAACA
Statistics
Matches: 136, Mismatches: 17, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
88 60 0.44
89 7 0.05
90 15 0.11
91 14 0.10
92 40 0.29
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (87 bp):
TGAAAACAGAAATTGAAAATACCTCGGTGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTCTTTCAAAAACAAAAA
Found at i:72772395 original size:127 final size:125
Alignment explanation
Indices: 72772168--72772397 Score: 329
Period size: 127 Copynumber: 1.8 Consensus size: 125
72772158 GTCCTGAGGC
*
72772168 TCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCC
1 TCAACCCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCC
72772233 CGAGGCTCAACTCACCTCTTGCAATATGAGCTGATTTTGGAAAAGTAGAAATTAAAAGGT
66 CGAGGCTCAACTCACCTCTTGCAATATGAGCTGATTTTGGAAAAGTAGAAATTAAAAGGT
** * * * *
72772293 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAA-ACAGAAATTGAAATTACCTCATCGTG
1 TCAACCCACCTCTCGCAATATGAGTTGA-AATT-AAAACACAAAAATTGAAAATACCTCAGCGTG
* *
72772357 TCCTGAGGCTCAACTCACCT-TTCGCAATATGAGTTGATTTT
64 -CCCGAGGCTCAACTCACCTCTT-GCAATATGAGCTGATTTT
72772398 TTTGAAAAAC
Statistics
Matches: 92, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
125 27 0.29
126 27 0.29
127 38 0.41
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (125 bp):
TCAACCCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCC
CGAGGCTCAACTCACCTCTTGCAATATGAGCTGATTTTGGAAAAGTAGAAATTAAAAGGT
Found at i:72772444 original size:76 final size:76
Alignment explanation
Indices: 72772293--72772735 Score: 384
Period size: 76 Copynumber: 5.7 Consensus size: 76
72772283 ATTAAAAGGT
* * * * *
72772293 TCAACCCACCTCTCGCAATATGAGTTGA--TTCTTGACAAACAGAAA-TTGAAATTACCTCATCG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTTAAAAATACCTCAGCG
72772355 TGTCCTGAGGC
66 TGTCCTGAGGC
* *
72772366 TCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTTAAAAATACCTCAGCG
72772431 TGTCCTGAGGC
66 TGTCCTGAGGC
* * * * **
72772442 TCAATTCACCTCTCGCAATATGAGTTGATTTATTTT-ACGAACAGAAATTGAAGAACAGAAATTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTT-TTTTGACAAACAGAAATTTAA-AA-A-TACCT-
* * * *
72772506 AAAAGACCTCAG-CATGTGAGC
61 --CAG-CGT--GTCCTGAG-GC
* * * *
72772527 -CGAGGCTCAACTCACCTCTCGCAATATGAGTT-A-ATTTTTGACAAACAGAAA-TTGAAATTAC
1 TC-A-ACT-----CACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTTAAAAATAC
*
72772588 CTCAGCGTGTCCCGAGGC
59 CTCAGCGTGTCCTGAGGC
* * * *
72772606 TCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATTTAAAAATACATCAGCG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTTAAAAATACCTCAGCG
72772671 TGTCCTGAGGC
66 TGTCCTGAGGC
* * * *
72772682 TCAACTCACCTCTCGCAATATGAGTT-ATTTTTTTTACGAACAAAAATTGAAAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTTAAAAA
72772736 CAGAAATTGA
Statistics
Matches: 293, Mismatches: 50, Indels: 52
0.74 0.13 0.13
Matches are distributed among these distances:
73 45 0.15
74 1 0.00
75 52 0.18
76 116 0.40
77 6 0.02
78 3 0.01
79 6 0.02
80 4 0.01
81 2 0.01
82 4 0.01
83 2 0.01
84 5 0.02
85 6 0.02
86 1 0.00
87 2 0.01
88 6 0.02
89 11 0.04
90 1 0.00
91 20 0.07
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (76 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTTAAAAATACCTCAGCG
TGTCCTGAGGC
Found at i:72772499 original size:14 final size:14
Alignment explanation
Indices: 72772480--72772507 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
72772470 TTTATTTTAC
72772480 GAACAGAAATTGAA
1 GAACAGAAATTGAA
72772494 GAACAGAAATTGAA
1 GAACAGAAATTGAA
72772508 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:72772553 original size:91 final size:88
Alignment explanation
Indices: 72772399--72772583 Score: 239
Period size: 91 Copynumber: 2.1 Consensus size: 88
72772389 GTTGATTTTT
* * *
72772399 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAATTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
* * *
72772464 AGTTGATTTATTTTACGAACAGAAA
66 AGTT-AATT-TTTGACAAACAGAAA
* *
72772489 TTGAAGAACAGAAA-TTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAAT
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGC--GTG-GCCTGAGGCTCAACTCACCTCTCGCAAT
72772552 ATGAGTTAATTTTTGACAAACAGAAA
63 ATGAGTTAATTTTTGACAAACAGAAA
72772578 TTGAAA
1 TTGAAA
72772584 TTACCTCAGC
Statistics
Matches: 83, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
89 32 0.39
90 16 0.19
91 33 0.40
92 2 0.02
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (88 bp):
TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTAATTTTTGACAAACAGAAA
Found at i:72772640 original size:75 final size:74
Alignment explanation
Indices: 72772495--72772734 Score: 311
Period size: 75 Copynumber: 3.2 Consensus size: 74
72772485 GAAATTGAAG
* **
72772495 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
*
72772560 -ATTTTTGACA
64 TTTTTTTGACA
* *
72772570 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-AT
*
72772635 TTTTTTGAAA
65 TTTTTTGACA
* * * *
72772645 AATAGAAATTTAAAAATACATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAT
1 AACAGAAA-TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAT
* *
72772710 TTTTTTTACG
65 TTTTTTGACA
*
72772720 AACAAAAATTGAAAA
1 AACAGAAATTGAAAA
72772735 ACAGAAATTG
Statistics
Matches: 143, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
73 35 0.24
74 7 0.05
75 52 0.36
76 49 0.34
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.28
Consensus pattern (74 bp):
AACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTATT
TTTTTGACA
Found at i:72772831 original size:239 final size:240
Alignment explanation
Indices: 72772293--72772876 Score: 1044
Period size: 240 Copynumber: 2.4 Consensus size: 240
72772283 ATTAAAAGGT
* * *
72772293 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
72772358 CCTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAATA
66 CCTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAATA
* * *
72772423 CCTCAGCGTGTCCTGAGGCTCAATTCACCTCTCGCAATATGAGTTGATTTATTTTACGAACAGAA
131 CATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTATTTTACGAACAAAA
*
72772488 ATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGC
196 ATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGC
*
72772533 TCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
* *
72772598 CCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATTTAAAAATA
66 CCTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAATA
*
72772663 CATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT-ATTTTTTTTACGAACAAAA
131 CATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTATTTTACGAACAAAA
72772727 ATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGC
196 ATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGC
72772772 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
* *
72772837 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
66 CCTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTT
72772877 AAAAACAGAA
Statistics
Matches: 329, Mismatches: 15, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
239 162 0.49
240 167 0.51
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (240 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
CCTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAATA
CATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTATTTTACGAACAAAA
ATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGC
Found at i:72772899 original size:14 final size:14
Alignment explanation
Indices: 72772877--72772908 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
72772867 AGTTGATTTT
72772877 AAAAACAGAAATTG
1 AAAAACAGAAATTG
*
72772891 AAAACCAGAAATTG
1 AAAAACAGAAATTG
72772905 AAAA
1 AAAA
72772909 TACCTCAGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.66, C:0.09, G:0.12, T:0.12
Consensus pattern (14 bp):
AAAAACAGAAATTG
Found at i:72772938 original size:160 final size:159
Alignment explanation
Indices: 72772564--72773038 Score: 587
Period size: 160 Copynumber: 2.9 Consensus size: 159
72772554 GAGTTAATTT
* *
72772564 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTC--CCGAGGCTCAACTCACCTTTCGCAATAT
1 TTGA-AAACAGAAATTGAAAATACCTCAGCGTGTCAGCCGAGGCTCAACTCACCTCTCGCAATAT
* * *
72772627 GAGTTGATTTTTTTGAAAAATAGAAATTTAAAAATACATCAGCGTGTCCTGAGGCTCAACTCACC
65 GAGTTGA--TTTTTGAAAAACAGAAA-TTAAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACC
**
72772692 TCTCGCAATATGAGTT-ATTTTTTTTACGAACAAAAA
127 TCTCGCAATATGAGTTGA----TTTTAAAAACAAAAA
* * *
72772728 TTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTG-AAAACAGAAATTGAAAATACCTCAGCGTGTCAGCCGAGGCTCAACTCACCTCTCGCAATAT
* * *
72772793 GAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCT
65 GAGTTGATTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCT
*
72772858 CGCAATATGAGTTGATTTTAAAAACAGAAA
130 CGCAATATGAGTTGATTTTAAAAACAAAAA
* *
72772888 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGTCAGCCAAGGCTCAACTCACCTCTTGCAATAT
1 TTGAAAA-CAGAAATTGAAAATACCTCAGCGTGTCAGCCGAGGCTCAACTCACCTCTCGCAATAT
* * * ** * ** * *
72772953 GAGCTAATTTTTTATGAACATAAATTAAAACCACCTTAGCGTGTCCTGAGAGGCTCAACTCACCT
65 GAGTTGATTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGT-CT-TGAGGCTCAACTCACCT
72773018 CTCGCAATATGAGTTGATTTT
128 CTCGCAATATGAGTTGATTTT
72773039 TTGAAAATCA
Statistics
Matches: 274, Mismatches: 30, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
159 4 0.01
160 101 0.37
161 2 0.01
162 37 0.14
163 50 0.18
164 45 0.16
165 1 0.00
166 34 0.12
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.28
Consensus pattern (159 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCAGCCGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTTTAAAAACAAAAA
Found at i:72772963 original size:87 final size:85
Alignment explanation
Indices: 72772803--72772963 Score: 227
Period size: 87 Copynumber: 1.9 Consensus size: 85
72772793 GAGTTGATTT
* *
72772803 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCTAGAGGCTCAACTCACCTCTCGCAATATGA
* *
72772868 GTTGATTTTAAAAACAGAAA
66 GCTAATTTTAAAAACAGAAA
*
72772888 TTGA-AAACCAGAAATTGAAAATACCTCAGCGTGTC-AGCCAAGGCTCAACTCACCTCTTGCAAT
1 TTGACAAA-CAGAAATTGAAAATACCTCAGCGTGTCTAG---AGGCTCAACTCACCTCTCGCAAT
72772951 ATGAGCTAATTTT
62 ATGAGCTAATTTT
72772964 TTATGAACAT
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
84 4 0.06
85 30 0.45
87 33 0.49
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (85 bp):
TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCTAGAGGCTCAACTCACCTCTCGCAATATGA
GCTAATTTTAAAAACAGAAA
Found at i:72781326 original size:16 final size:15
Alignment explanation
Indices: 72781305--72781352 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
72781295 TGATGGAATA
72781305 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
72781321 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
72781336 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
72781352 A
1 A
72781353 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:72781335 original size:8 final size:8
Alignment explanation
Indices: 72781301--72781352 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
72781291 ACAATGATGG
*
72781301 AATAATAA
1 AATATTAA
72781309 AATATATAA
1 AATAT-TAA
72781318 AATA-TAA
1 AATATTAA
72781325 AATATTAA
1 AATATTAA
*
72781333 AATATCAA
1 AATATTAA
*
72781341 AATATTAG
1 AATATTAA
72781349 AATA
1 AATA
72781353 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:72781352 original size:24 final size:24
Alignment explanation
Indices: 72781300--72781356 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
72781290 AACAATGATG
*
72781300 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
72781324 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
72781348 GAATAATAA
1 GAATAATAA
72781357 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:72781517 original size:20 final size:20
Alignment explanation
Indices: 72781462--72781519 Score: 64
Period size: 22 Copynumber: 2.9 Consensus size: 20
72781452 ATACTACATC
72781462 AATATGTACAT-ATATAAAA
1 AATATGTACATAATATAAAA
** *
72781481 AATAAATACTGATAATATTAAA
1 AATATGTAC--ATAATATAAAA
72781503 AATATGTACATAATATA
1 AATATGTACATAATATA
72781520 GTGTTAAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
19 7 0.23
20 7 0.23
21 2 0.07
22 14 0.47
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33
Consensus pattern (20 bp):
AATATGTACATAATATAAAA
Found at i:72781561 original size:22 final size:24
Alignment explanation
Indices: 72781498--72781562 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
72781488 ACTGATAATA
*
72781498 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
72781523 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
72781546 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
72781563 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:72781600 original size:13 final size:12
Alignment explanation
Indices: 72781582--72781638 Score: 55
Period size: 13 Copynumber: 4.8 Consensus size: 12
72781572 TAAAATATAT
72781582 ATATATATAAATA
1 ATATATAT-AATA
*
72781595 ATATATATTA-A
1 ATATATATAATA
*
72781606 AGATATATAATA
1 ATATATATAATA
*
72781618 AAATAGTATAAT-
1 ATATA-TATAATA
72781630 ATATATATA
1 ATATATATA
72781639 CGTAATATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
11 13 0.35
12 10 0.27
13 14 0.38
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.39
Consensus pattern (12 bp):
ATATATATAATA
Found at i:72781600 original size:15 final size:15
Alignment explanation
Indices: 72781574--72781634 Score: 56
Period size: 15 Copynumber: 4.1 Consensus size: 15
72781564 ATAACATGTA
72781574 AAATATATATATATAT
1 AAATA-ATATATATAT
72781590 AAATAATATATAT-T
1 AAATAATATATATAT
*
72781604 AAA-GATATATA-AT
1 AAATAATATATATAT
*
72781617 AAAATAGTATAATATAT
1 -AAATAATAT-ATATAT
72781634 A
1 A
72781635 TATACGTAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
13 8 0.22
14 7 0.19
15 11 0.30
16 9 0.24
17 2 0.05
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (15 bp):
AAATAATATATATAT
Found at i:72782234 original size:28 final size:30
Alignment explanation
Indices: 72782183--72782296 Score: 187
Period size: 30 Copynumber: 3.9 Consensus size: 30
72782173 TAGGTACAAG
*
72782183 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
72782213 TGGTGGTGG-AAA-GTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
* *
72782241 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
72782271 TGGTGGTGGAAAAGGTGTGGCTAGTG
1 TGGTGGTGGAAAAGGTGTGGCTAGTG
72782297 AGAAAGTTTA
Statistics
Matches: 78, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
28 25 0.32
29 5 0.06
30 48 0.62
ACGTcount: A:0.20, C:0.04, G:0.50, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:72782273 original size:58 final size:60
Alignment explanation
Indices: 72782183--72782296 Score: 187
Period size: 58 Copynumber: 1.9 Consensus size: 60
72782173 TAGGTACAAG
* * *
72782183 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGG-AAA-GTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
72782241 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAGGTGTGGCTAGTG
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAGGTGTGGCTAGTG
72782297 AGAAAGTTTA
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
58 36 0.71
59 3 0.06
60 12 0.24
ACGTcount: A:0.20, C:0.04, G:0.50, T:0.26
Consensus pattern (60 bp):
TGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:72784452 original size:24 final size:23
Alignment explanation
Indices: 72784423--72784508 Score: 77
Period size: 24 Copynumber: 3.6 Consensus size: 23
72784413 GCGTCAACCT
72784423 CCATATCCACCACCGCCACCGCCG
1 CCATATCCACCACCGCC-CCGCCG
* *
72784447 CCATATCCGCCACCG--CCTCCG
1 CCATATCCACCACCGCCCCGCCG
72784468 CCATATCCGCCACCACCGCCTCCGCCG
1 CCATAT---CCACCACCGCC-CCGCCG
* *
72784495 TCATATCCTCCACC
1 CCATATCCACCACC
72784509 ATTCCCGAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
21 11 0.22
24 29 0.58
27 10 0.20
ACGTcount: A:0.17, C:0.57, G:0.12, T:0.14
Consensus pattern (23 bp):
CCATATCCACCACCGCCCCGCCG
Found at i:72784458 original size:18 final size:18
Alignment explanation
Indices: 72784435--72784487 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 18
72784425 ATATCCACCA
72784435 CCGCCACCGCCGCCATAT
1 CCGCCACCGCCGCCATAT
72784453 CCGCCACCGCCTCCGCCATAT
1 CCGCCACCG---CCGCCATAT
*
72784474 CCGCCACCACCGCC
1 CCGCCACCGCCGCC
72784488 TCCGCCGTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
18 14 0.45
21 17 0.55
ACGTcount: A:0.15, C:0.60, G:0.15, T:0.09
Consensus pattern (18 bp):
CCGCCACCGCCGCCATAT
Found at i:72786708 original size:1 final size:1
Alignment explanation
Indices: 72786702--72786733 Score: 55
Period size: 1 Copynumber: 32.0 Consensus size: 1
72786692 TGATGAATGC
*
72786702 AAAAAAAAAAAAAAAAAAAAAAAAAAATAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
72786734 TATGAACGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.97, C:0.00, G:0.00, T:0.03
Consensus pattern (1 bp):
A
Found at i:72787287 original size:19 final size:19
Alignment explanation
Indices: 72787265--72787310 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
72787255 AGAATTTTAA
72787265 ATAATATTTT-ATATTTTTT
1 ATAAT-TTTTAATATTTTTT
*
72787284 ATAATTTTTAATTTTTTTT
1 ATAATTTTTAATATTTTTT
72787303 ATAATTTT
1 ATAATTTT
72787311 AGACTCATCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (19 bp):
ATAATTTTTAATATTTTTT
Found at i:72787292 original size:10 final size:10
Alignment explanation
Indices: 72787242--72787310 Score: 54
Period size: 10 Copynumber: 7.2 Consensus size: 10
72787232 TGCTTTTCAA
72787242 TTTT-TAATT
1 TTTTATAATT
* *
72787251 TCTTAGAATT
1 TTTTATAATT
** *
72787261 TTAAATAATA
1 TTTTATAATT
72787271 TTTTAT-ATT
1 TTTTATAATT
72787280 TTTTATAATT
1 TTTTATAATT
* *
72787290 TTTAAT-TTT
1 TTTTATAATT
72787299 TTTTATAATT
1 TTTTATAATT
72787309 TT
1 TT
72787311 AGACTCATCT
Statistics
Matches: 43, Mismatches: 14, Indels: 5
0.69 0.23 0.08
Matches are distributed among these distances:
9 18 0.42
10 25 0.58
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.67
Consensus pattern (10 bp):
TTTTATAATT
Found at i:72788952 original size:51 final size:51
Alignment explanation
Indices: 72788842--72789093 Score: 214
Period size: 51 Copynumber: 5.0 Consensus size: 51
72788832 GTAAATAATG
* * * *
72788842 GTTTAAAATAAATAATGTATA-AGAACAATTCAAAATGAATAA-ATA-AAAAA
1 GTTTGAAATAAATAATATATATA-AA-AATTTAAAATAAATAATATATAAAAA
* * * * *
72788892 ATCTCAAATAAATAATATATATAAAAAATTAAAGTAAATAATA-ATAAAACA
1 GTTTGAAATAAATAATATATATAAAAATTTAAAATAAATAATATATAAAA-A
* *
72788943 GTTTGAAATAAACAATATATA-AAAGAATTTTAAAATAAATAACATATAAAATA
1 GTTTGAAATAAATAATATATATAAA-AA-TTTAAAATAAATAATATATAAAA-A
* * * * *
72788996 GTTTGAACTACATAACATATAT-AAAATTTAAAATATATAATATGT-AAAA
1 GTTTGAAATAAATAATATATATAAAAATTTAAAATAAATAATATATAAAAA
* * **
72789045 -TTTTAAATAAATAGTATATATAAAAACGTAAAATAAATAATATATAAAA
1 GTTTGAAATAAATAATATATATAAAAATTTAAAATAAATAATATATAAAA
72789094 TAATTTAAAA
Statistics
Matches: 160, Mismatches: 32, Indels: 20
0.75 0.15 0.09
Matches are distributed among these distances:
48 16 0.10
49 33 0.21
50 33 0.21
51 37 0.23
52 15 0.09
53 26 0.16
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.30
Consensus pattern (51 bp):
GTTTGAAATAAATAATATATATAAAAATTTAAAATAAATAATATATAAAAA
Found at i:72788980 original size:27 final size:25
Alignment explanation
Indices: 72788843--72789285 Score: 212
Period size: 25 Copynumber: 17.4 Consensus size: 25
72788833 TAAATAATGG
*
72788843 TTTAAAATAAATAATGTATAAGAACAA
1 TTTAAAATAAATAATATATAA-AA-AA
* *
72788870 TTCAAAATGAATAA-ATA-AAAAAA
1 TTTAAAATAAATAATATATAAAAAA
* *
72788893 TCTCAAATAAATAATATATATAAAAA
1 TTTAAAATAAATAATATATA-AAAAA
* * *
72788919 ATTAAAGTAAATAATA-ATAAAACAG
1 TTTAAAATAAATAATATATAAAA-AA
* *
72788944 TTTGAAATAAACAATATATAAAAGAA
1 TTTAAAATAAATAATATATAAAA-AA
* *
72788970 TTTTAAAATAAATAACATATAAAATAG
1 -TTTAAAATAAATAATATATAAAA-AA
* * * * *
72788997 TTTGAACTACATAACATATATAAAA
1 TTTAAAATAAATAATATATAAAAAA
* *
72789022 TTTAAAATATATAATATGT--AAAA
1 TTTAAAATAAATAATATATAAAAAA
* *
72789045 TTTTAAATAAATAGTATATATAAAAA
1 TTTAAAATAAATAATATATA-AAAAA
**
72789071 CGTAAAATAAATAATATATAAAATAA
1 TTTAAAATAAATAATATATAAAA-AA
* **
72789097 TTTAAAAT-AAT-ATGTAATAAAACCG
1 TTTAAAATAAATAATAT-ATAAAA-AA
* *
72789122 TTTAAAGTAACTAGTTAATATATATATATAA
1 TTTAAAATAA--A--TAATATATA-A-AAAA
* *
72789153 CTTAAAATAATATACA-ATA-AAACAA
1 TTTAAAATAA-ATA-ATATATAAAAAA
* * * **
72789178 TTTGAAATGAAT-ACATA-AATCAA
1 TTTAAAATAAATAATATATAAAAAA
* * * *
72789201 TTTTAAATAAATGATAAATAAAATAG
1 TTTAAAATAAATAATATATAAAA-AA
* *
72789227 TTT--AAGAAATAATATGTAAAAAA
1 TTTAAAATAAATAATATATAAAAAA
* *
72789250 TATAAAATAAATAA-ATATAAAACTA
1 TTTAAAATAAATAATATATAAAA-AA
72789275 TTTAAAATAAA
1 TTTAAAATAAA
72789286 ATATATGTTT
Statistics
Matches: 313, Mismatches: 76, Indels: 56
0.70 0.17 0.13
Matches are distributed among these distances:
22 1 0.00
23 52 0.17
24 37 0.12
25 84 0.27
26 79 0.25
27 34 0.11
28 6 0.02
29 1 0.00
30 6 0.02
31 12 0.04
32 1 0.00
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.31
Consensus pattern (25 bp):
TTTAAAATAAATAATATATAAAAAA
Found at i:72789033 original size:16 final size:16
Alignment explanation
Indices: 72789012--72789045 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
72789002 ACTACATAAC
*
72789012 ATATATAAAATTTAAA
1 ATATATAAAATGTAAA
*
72789028 ATATATAATATGTAAA
1 ATATATAAAATGTAAA
72789044 AT
1 AT
72789046 TTTAAATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (16 bp):
ATATATAAAATGTAAA
Found at i:72789043 original size:23 final size:23
Alignment explanation
Indices: 72788843--72789094 Score: 112
Period size: 26 Copynumber: 10.0 Consensus size: 23
72788833 TAAATAATGG
*
72788843 TTTAAAATAAATAATGTATAAGAACAA
1 TTTAAAATAAATAA--TAT-ATAA-AA
* * *
72788870 TTCAAAATGAATAA-ATAAAAAAA
1 TTTAAAATAAATAATAT-ATAAAA
* *
72788893 TCTCAAATAAATAATATATATAAAAA
1 TTTAAAATAAAT-A-ATATAT-AAAA
* *
72788919 ATTAAAGTAAATAATA-ATAAAACA
1 TTTAAAATAAATAATATAT-AAA-A
* *
72788943 GTTTGAAATAAACAATATATAAAAGAA
1 -TTTAAAATAAATAATATAT--AA-AA
*
72788970 TTTTAAAATAAATAACATATAAAATA
1 -TTTAAAATAAATAATATAT-AAA-A
* * *
72788996 GTTTGAACTACATAACATATATAAAA
1 -TTTAAAATAAAT-A-ATATATAAAA
* *
72789022 TTTAAAATATATAATATGTAAAA
1 TTTAAAATAAATAATATATAAAA
*
72789045 TTTTAAATAAATAGTATATATAAAAA
1 TTTAAAATAAATA--ATATAT-AAAA
**
72789071 CGTAAAATAAATAATATATAAAA
1 TTTAAAATAAATAATATATAAAA
72789094 T
1 T
72789095 AATTTAAAAT
Statistics
Matches: 174, Mismatches: 36, Indels: 34
0.71 0.15 0.14
Matches are distributed among these distances:
23 40 0.23
24 18 0.10
25 30 0.17
26 44 0.25
27 36 0.21
28 6 0.03
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.31
Consensus pattern (23 bp):
TTTAAAATAAATAATATATAAAA
Found at i:72789196 original size:23 final size:24
Alignment explanation
Indices: 72789164--72789208 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
72789154 TTAAAATAAT
72789164 ATACAATAAAACAATTTGAAATGA
1 ATACAATAAAACAATTTGAAATGA
* *
72789188 ATAC-ATAAATCAATTTTAAAT
1 ATACAATAAAACAATTTGAAAT
72789209 AAATGATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.56, C:0.09, G:0.04, T:0.31
Consensus pattern (24 bp):
ATACAATAAAACAATTTGAAATGA
Found at i:72789261 original size:25 final size:25
Alignment explanation
Indices: 72789233--72789303 Score: 65
Period size: 25 Copynumber: 2.8 Consensus size: 25
72789223 ATAGTTTAAG
72789233 AAATAATATGTAAAAAATATAAAAT
1 AAATAATATGTAAAAAATATAAAAT
* * *
72789258 AAATAA-ATATAAAACTATTTAAAAT
1 AAATAATATGTAAAA-AATATAAAAT
72789283 AAA-ATATATGTTTAAAAAATA
1 AAATA-ATATG--TAAAAAATA
72789304 AATAAGCAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
24 8 0.23
25 18 0.51
26 2 0.06
27 2 0.06
28 5 0.14
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (25 bp):
AAATAATATGTAAAAAATATAAAAT
Found at i:72803297 original size:10 final size:10
Alignment explanation
Indices: 72803279--72803321 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
72803269 AAATCTGTAA
72803279 TAATTAAAAT
1 TAATTAAAAT
*
72803289 TAATCAAAATT
1 TAATTAAAA-T
*
72803300 TGATATAAAAT
1 TAAT-TAAAAT
72803311 TAATTAAAAT
1 TAATTAAAAT
72803321 T
1 T
72803322 CAACATGTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
10 15 0.56
11 8 0.30
12 4 0.15
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (10 bp):
TAATTAAAAT
Found at i:72808979 original size:38 final size:38
Alignment explanation
Indices: 72808928--72809073 Score: 143
Period size: 38 Copynumber: 3.9 Consensus size: 38
72808918 ATATAAGGTA
* * * *
72808928 TTATCGGGCTATATGCCTAGTAGGCCTTCATGCTGGTG
1 TTATCAGGCTATATGCCTAGCAAGCCTTCGTGCTGGTG
* *
72808966 TTATCAGGCTATATGCCTAACAAGCCTTTGTG-TCGGTG
1 TTATCAGGCTATATGCCTAGCAAGCCTTCGTGCT-GGTG
* * * **
72809004 TTATCAAGCTATGTGCCTAGCAACCCTTCGTGCCAGTG
1 TTATCAGGCTATATGCCTAGCAAGCCTTCGTGCTGGTG
* * *
72809042 TTATCGGGCTATGTGCCTAGCATG-CTTCGTGC
1 TTATCAGGCTATATGCCTAGCAAGCCTTCGTGC
72809074 CATTGTTTAA
Statistics
Matches: 89, Mismatches: 17, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
37 9 0.10
38 80 0.90
ACGTcount: A:0.18, C:0.24, G:0.25, T:0.33
Consensus pattern (38 bp):
TTATCAGGCTATATGCCTAGCAAGCCTTCGTGCTGGTG
Found at i:72812899 original size:43 final size:42
Alignment explanation
Indices: 72812779--72812937 Score: 182
Period size: 43 Copynumber: 3.7 Consensus size: 42
72812769 AGCTCGTACA
* *
72812779 ATGCCAACATCCCAGAAGTGGTCTTACATGCAATCAAATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACATGAAATCAAATA-CG
* * *
72812822 ATGCC-ACTGTCCCAAACAG-GGTCTTACACGAAATCAAATACG
1 ATGCCAAC-ATCCCAGAC-GTGGTCTTACATGAAATCAAATACG
*
72812864 ATGCCAACATCCTAGACGTGGTCTTACATGTAAATCATAAGT-CG
1 ATGCCAACATCCCAGACGTGGTCTTACATG-AAATCA-AA-TACG
72812908 ATGCCAACATCCCAGACGTGGT-TTACATGA
1 ATGCCAACATCCCAGACGTGGTCTTACATGA
72812938 TAACACATAT
Statistics
Matches: 99, Mismatches: 10, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
41 1 0.01
42 26 0.26
43 45 0.45
44 26 0.26
45 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (42 bp):
ATGCCAACATCCCAGACGTGGTCTTACATGAAATCAAATACG
Found at i:72820470 original size:42 final size:43
Alignment explanation
Indices: 72820402--72820524 Score: 130
Period size: 43 Copynumber: 2.9 Consensus size: 43
72820392 TTCAGACGTG
* *
72820402 GTCTTACATGTAATCAAATATCGATGCC-ACTGTCCCAGATAGA
1 GTCTTACACGAAATCAAATATCGATGCCAAC-GTCCCAGATAGA
72820445 GTCTTACACGAAATCAAATAT-GATGCCAACGTCCCAGACGT-G-
1 GTCTTACACGAAATCAAATATCGATGCCAACGTCCCAGA--TAGA
* *
72820487 GTCTTACACAAAAATCATAA-GTCGATGCCAACGTCCCA
1 GTCTTACAC-GAAATCA-AATATCGATGCCAACGTCCCA
72820525 AACGTGGTCT
Statistics
Matches: 70, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
42 23 0.33
43 29 0.41
44 18 0.26
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (43 bp):
GTCTTACACGAAATCAAATATCGATGCCAACGTCCCAGATAGA
Found at i:72824167 original size:35 final size:35
Alignment explanation
Indices: 72824102--72824168 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 35
72824092 TCTAAACTTA
* ****
72824102 TTTTAAAATTTTTATTTTTTAATTTTTTAAATAAT
1 TTTTAAAATTTTTATTTTATAAAAGATTAAATAAT
72824137 TTTTAAAATTTTTATTTTATAAAAGATTAAAT
1 TTTTAAAATTTTTATTTTATAAAAGATTAAAT
72824169 TATGACATCA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 27 1.00
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (35 bp):
TTTTAAAATTTTTATTTTATAAAAGATTAAATAAT
Found at i:72833524 original size:22 final size:25
Alignment explanation
Indices: 72833499--72833551 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 25
72833489 AAATCATACA
*
72833499 ATATTAATT-TT-AAAT-TATATTT
1 ATATTAATTCTTAAAATATATATTC
72833521 ATATT-ATTCTTAAAATATATATTC
1 ATATTAATTCTTAAAATATATATTC
72833545 ATATTAA
1 ATATTAA
72833552 ATAATAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 3 0.12
22 7 0.27
23 4 0.15
24 11 0.42
25 1 0.04
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (25 bp):
ATATTAATTCTTAAAATATATATTC
Done.