Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 221 of 333
Found at i:72833823 original size:11 final size:11
Alignment explanation
Indices: 72833807--72833832 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
72833797 TAATAAAGGT
72833807 AAAAAAAAAGA
1 AAAAAAAAAGA
72833818 AAAAAAAAAGA
1 AAAAAAAAAGA
72833829 AAAA
1 AAAA
72833833 GAAGCTATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:72838347 original size:29 final size:27
Alignment explanation
Indices: 72838295--72838348 Score: 72
Period size: 29 Copynumber: 1.9 Consensus size: 27
72838285 ATAGCCATGA
* *
72838295 AGACTTCCTTTACAGAGATTGCCACAT
1 AGACTTCCTTTACAAAGATCGCCACAT
72838322 AGACTTTCCTTTGACAAAGATCGCCAC
1 AGAC-TTCCTTT-ACAAAGATCGCCAC
72838349 GAAGGCATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 4 0.17
28 7 0.30
29 12 0.52
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
AGACTTCCTTTACAAAGATCGCCACAT
Found at i:72839589 original size:27 final size:27
Alignment explanation
Indices: 72839537--72839616 Score: 106
Period size: 27 Copynumber: 2.9 Consensus size: 27
72839527 GTGACAGAGT
*
72839537 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGGGC
* *
72839566 CACCATAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGGGC
72839593 CACCAGAACAGATAATTTGTGGCA
1 CACCAGAACAGAT-ATTTGTGGCA
72839617 TAGCCACTAG
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
27 23 0.51
28 16 0.36
29 6 0.13
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.23
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGGGC
Found at i:72839775 original size:28 final size:28
Alignment explanation
Indices: 72839732--72839796 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
72839722 AAATTAACCC
72839732 TAGGGGTATAACGGTAATTTTGCATACA
1 TAGGGGTATAACGGTAATTTTGCATACA
*
72839760 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAACGGTAATTTTGCATACA
*
72839788 TAAGGGTAT
1 TAGGGGTAT
72839797 TCTAGTACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAACGGTAATTTTGCATACA
Found at i:72847195 original size:27 final size:27
Alignment explanation
Indices: 72847145--72847231 Score: 113
Period size: 27 Copynumber: 3.1 Consensus size: 27
72847135 AGCATGGCTG
72847145 CCAGATACAGATATTTTGTGGCAGTGCCA
1 CCAGA-ACAGATA-TTTGTGGCAGTGCCA
* *
72847174 CCAGAACAGATATATGTGGCAGGGCCA
1 CCAGAACAGATATTTGTGGCAGTGCCA
72847201 CCAGAACAGATAATTTGTGGCA-TAGCCA
1 CCAGAACAGAT-ATTTGTGGCAGT-GCCA
72847229 CCA
1 CCA
72847232 AGACGCTTCC
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
27 24 0.46
28 23 0.44
29 5 0.10
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (27 bp):
CCAGAACAGATATTTGTGGCAGTGCCA
Found at i:72847381 original size:28 final size:28
Alignment explanation
Indices: 72847338--72847402 Score: 121
Period size: 28 Copynumber: 2.3 Consensus size: 28
72847328 AAATTAACCC
72847338 TAGGGGTATAACGGTAATTTTGCATACA
1 TAGGGGTATAACGGTAATTTTGCATACA
*
72847366 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAACGGTAATTTTGCATACA
72847394 TAGGGGTAT
1 TAGGGGTAT
72847403 TCTAGTACAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAACGGTAATTTTGCATACA
Found at i:72850227 original size:42 final size:40
Alignment explanation
Indices: 72850147--72850232 Score: 102
Period size: 42 Copynumber: 2.1 Consensus size: 40
72850137 CTATAACATT
* *
72850147 TACACCATCAAAACTTACTAAGCCCAAGGCTTGATACAAA
1 TACACCATCAAAACTTACTAAGCCCAAGACCTGATACAAA
* *
72850187 TACACCAGTTCAAAGCTTGCTAAGCCCAAGACCT-ATTACAAA
1 TACACCA--TCAAAACTTACTAAGCCCAAGACCTGA-TACAAA
72850229 TACA
1 TACA
72850233 TCTACCCAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
40 7 0.18
41 1 0.03
42 31 0.79
ACGTcount: A:0.41, C:0.28, G:0.10, T:0.21
Consensus pattern (40 bp):
TACACCATCAAAACTTACTAAGCCCAAGACCTGATACAAA
Found at i:72853075 original size:6 final size:6
Alignment explanation
Indices: 72853064--72853165 Score: 102
Period size: 6 Copynumber: 16.8 Consensus size: 6
72853054 AACCAAAATG
* * *
72853064 AGAATC AGAATC AGAATC AGTAA-C AGAATC AAAATC AGAATC AGTATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
* *
72853112 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
72853161 AGAAT
1 AGAAT
72853166 GTGAATGCAA
Statistics
Matches: 79, Mismatches: 10, Indels: 14
0.77 0.10 0.14
Matches are distributed among these distances:
5 5 0.06
6 68 0.86
7 5 0.06
8 1 0.01
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:72853079 original size:30 final size:29
Alignment explanation
Indices: 72853043--72853165 Score: 138
Period size: 30 Copynumber: 4.1 Consensus size: 29
72853033 AAGAAACATT
* * *
72853043 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
* *
72853073 ATCAGAATCAGTAACAGAATCAAAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
*
72853103 ATCAGTATTAGTAACAGAATCAGAATCAGA
1 ATCAGAATT-GTAACAGAATCAGAATCAGA
*
72853133 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
72853164 AT
1 AT
72853166 GTGAATGCAA
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
30 55 0.70
31 24 0.30
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:72853319 original size:27 final size:26
Alignment explanation
Indices: 72853283--72853348 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
72853273 AGCATGGCTG
* *
72853283 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAAAGCCA
* *
72853309 CCAGATACAGATATTGTGGCAAAGCCA
1 CCAGA-ACAGATATCGTGACAAAGCCA
72853336 CCAGAATCAGATA
1 CCAGAA-CAGATA
72853349 ATGTGGCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.18
27 28 0.82
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAAAGCCA
Found at i:72853353 original size:27 final size:27
Alignment explanation
Indices: 72853307--72853364 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
72853297 GTGACAGAGT
* *
72853307 CACCAGATACAGATATTGTGGCAAAGC
1 CACCAGATACAGATAATGTGGCAAACC
72853334 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
72853361 CACC
1 CACC
72853365 TAACAGAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 1 0.04
27 27 0.96
ACGTcount: A:0.38, C:0.28, G:0.19, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:72853566 original size:22 final size:22
Alignment explanation
Indices: 72853518--72853576 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
72853508 GTAAATACGT
*
72853518 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
72853540 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
72853562 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
72853577 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:72853743 original size:27 final size:26
Alignment explanation
Indices: 72853664--72853745 Score: 110
Period size: 27 Copynumber: 3.1 Consensus size: 26
72853654 TCGATCGGTC
* * *
72853664 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
72853690 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
72853717 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
72853744 AA
1 AA
72853746 TGCTTCCTCC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:72853964 original size:27 final size:28
Alignment explanation
Indices: 72853902--72853965 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 28
72853892 CAGTCACTTG
*
72853902 CCCACAAGGGCAAAACAGTCATTTAACA
1 CCCACAAGGGCAAAACAGTAATTTAACA
* ** *
72853930 CCC-TAAGGGCAAAATGGTAATTTTAC-
1 CCCACAAGGGCAAAACAGTAATTTAACA
72853956 CCCACAAGGG
1 CCCACAAGGG
72853966 TATCTCAGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
26 3 0.10
27 23 0.79
28 3 0.10
ACGTcount: A:0.38, C:0.27, G:0.19, T:0.17
Consensus pattern (28 bp):
CCCACAAGGGCAAAACAGTAATTTAACA
Found at i:72853976 original size:27 final size:27
Alignment explanation
Indices: 72853946--72854140 Score: 248
Period size: 27 Copynumber: 7.2 Consensus size: 27
72853936 GGGCAAAATG
* * * *
72853946 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
72853973 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
72854000 GTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
**
72854026 GATAATTCTACCCTACAGGGGTATTTTG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * *
72854054 GTAATTCTATCCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
72854081 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
72854108 GAAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
72854135 GTAATT
1 GTAATT
72854141 TCACAATCAA
Statistics
Matches: 145, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 143 0.99
28 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:72854011 original size:54 final size:54
Alignment explanation
Indices: 72853945--72854140 Score: 277
Period size: 54 Copynumber: 3.6 Consensus size: 54
72853935 AGGGCAAAAT
* * *
72853945 GGTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* * *
72853999 AGTATTTCTACCCTACAAGGGTATTTC-GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTC
* * *
72854053 GGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* *
72854107 GGAAATTCTACCCTACAGGGGTATTTCAGTAATT
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATT
72854141 TCACAATCAA
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 122 0.98
55 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
Found at i:72854175 original size:27 final size:27
Alignment explanation
Indices: 72854145--72854473 Score: 350
Period size: 27 Copynumber: 12.2 Consensus size: 27
72854135 GTAATTTCAC
* * *
72854145 AATCAAGGGTAAAATGATAATTCTATA
1 AATCGAGGGTAAAACGATAATTCTGTA
*
72854172 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
*
72854199 AA-CTGAGGGT-AAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGA-TAATTCTGTA
* * * **
72854226 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGATAATTCTGTA
72854253 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
*
72854280 AATCGAGGGTAAAAC-AGTAATCCTGTA
1 AATCGAGGGTAAAACGA-TAATTCTGTA
* *
72854307 AA-CTAAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGATAATTCTGTA
* *
72854334 AATCGAGGGTAAAA-TAGTAATTCTAT-
1 AATCGAGGGTAAAACGA-TAATTCTGTA
*
72854360 AACCTGAGGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAACGATAATTCTGTA
* *
72854388 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGATAATTCTGTA
* *
72854415 AA-CTAAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGATAATTCTGTA
72854442 AATCGAGGGTAAAACGGA-AATTCTGTA
1 AATCGAGGGTAAAAC-GATAATTCTGTA
72854469 AATCG
1 AATCG
72854474 GGAGTACTTT
Statistics
Matches: 252, Mismatches: 35, Indels: 30
0.79 0.11 0.09
Matches are distributed among these distances:
26 12 0.05
27 228 0.90
28 12 0.05
ACGTcount: A:0.41, C:0.11, G:0.21, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAACGATAATTCTGTA
Found at i:72854256 original size:81 final size:81
Alignment explanation
Indices: 72854145--72854472 Score: 416
Period size: 81 Copynumber: 4.0 Consensus size: 81
72854135 GTAATTTCAC
* * *
72854145 AATCAAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGT
1 AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATC-GAGGGT
*
72854209 AAACCAGTAATTCTGTA
65 AAAACAGTAATTCTGTA
* *
72854226 AATCAAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
1 AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
*
72854291 AAACAGTAATCCTGTA
66 AAACAGTAATTCTGTA
* * * *
72854307 AA-CTAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA-TAGTAATTCTAT-AACCTGAGG
1 AATC-AAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGA-TAATTCTGTAAATC-GAGG
72854369 GTAAAAC-GATAATTCTGTA
63 GTAAAACAG-TAATTCTGTA
* * *
72854388 AATCGAGGGTAAAACGGTAATTCTATAAA-CTAAGGGTAAAACGGTAATTCTGTAAATCGAGGGT
1 AATCAAGGGTAAAACGGTAATTCTATAAATC-GAGGGTAAAACGATAATTCTGTAAATCGAGGGT
* *
72854452 AAAACGGAAATTCTGTA
65 AAAACAGTAATTCTGTA
72854469 AATC
1 AATC
72854473 GGGAGTACTT
Statistics
Matches: 215, Mismatches: 22, Indels: 20
0.84 0.09 0.08
Matches are distributed among these distances:
80 7 0.03
81 202 0.94
82 6 0.03
ACGTcount: A:0.41, C:0.11, G:0.21, T:0.26
Consensus pattern (81 bp):
AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
AAACAGTAATTCTGTA
Found at i:72864410 original size:40 final size:40
Alignment explanation
Indices: 72864366--72864525 Score: 257
Period size: 40 Copynumber: 4.0 Consensus size: 40
72864356 CTGAATATAA
*
72864366 TACCAGCACTAAGCCTGCGGGATTTAACCCGGATATACAT
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATACAT
*
72864406 TACCAGCACGAAGCCTGCGGAATTTAACCCGGATATACAT
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATACAT
* *
72864446 TACCAGCACGAAGCCTGCGGGATTTGACCCAGATATACAT
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATACAT
* * *
72864486 TACCAGCACGAAGCCTGTGGGATTTGACCCGAATATACAT
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATACAT
72864526 AATATATCGA
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 112 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (40 bp):
TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATACAT
Found at i:72864451 original size:80 final size:80
Alignment explanation
Indices: 72864343--72864525 Score: 262
Period size: 80 Copynumber: 2.3 Consensus size: 80
72864333 TCAAAGTCTA
* * *
72864343 CGGAACTTTAAGCCTGAATATA-A-TACCAGCACTAAGCCTGCGGGATTTAACCCGGATATACAT
1 CGGAA-TTTAA-CCCGAATATACATTACCAGCACGAAGCCTGCGGGATTTAACCCAGATATACAT
72864406 TACCAGCACGAAGCCTG
64 TACCAGCACGAAGCCTG
* *
72864423 CGGAATTTAACCCGGATATACATTACCAGCACGAAGCCTGCGGGATTTGACCCAGATATACATTA
1 CGGAATTTAACCCGAATATACATTACCAGCACGAAGCCTGCGGGATTTAACCCAGATATACATTA
72864488 CCAGCACGAAGCCTG
66 CCAGCACGAAGCCTG
* * *
72864503 TGGGATTTGACCCGAATATACAT
1 CGGAATTTAACCCGAATATACAT
72864526 AATATATCGA
Statistics
Matches: 92, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
78 8 0.09
79 6 0.07
80 78 0.85
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.22
Consensus pattern (80 bp):
CGGAATTTAACCCGAATATACATTACCAGCACGAAGCCTGCGGGATTTAACCCAGATATACATTA
CCAGCACGAAGCCTG
Found at i:72870931 original size:19 final size:19
Alignment explanation
Indices: 72870907--72870944 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
72870897 ATAAGCTAGA
72870907 GGCTTACATTATTGACACT
1 GGCTTACATTATTGACACT
72870926 GGCTTACATTATTGACACT
1 GGCTTACATTATTGACACT
72870945 AGGAATAGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (19 bp):
GGCTTACATTATTGACACT
Found at i:72885091 original size:230 final size:229
Alignment explanation
Indices: 72884687--72885115 Score: 686
Period size: 230 Copynumber: 1.9 Consensus size: 229
72884677 AATATTTCAT
*
72884687 GGGTTTAGACTCGATTTTTAAAAAAAAATAACTTCCTCCATCTCAAACTTATTTTTTTTAAAAGA
1 GGGTTTAGACTCGA-TTTTAAAAAAAAATAACTTCCCCCATCTCAAACTTATTTTTTTTAAAAGA
* *
72884752 AATTCAACTCTATCAAATCGAATCGAATGAAAACCAATCTATTTCATTTTTTTTATCATATCTCT
65 AATCCAACTCTATCAAATCGAATCAAATGAAAACCAATCTATTTCATTTTTTTTATCATA-CTCT
* *
72884817 ATCAATAATTACTATTATAAATAAATTGAGTTTGACTCTACTCCATT-ATTTGTTGGTCCATTAA
129 ATCAATAATTACTATTACAAATAAATTGAGTTTGACTCTACTCCATTAATTT-TTCGTCCATTAA
72884881 CTAATTAGATTTTGTAAATATTTCAAACGGGTAGAAC
193 CTAATTAGATTTTGTAAATATTTCAAACGGGTAGAAC
*
72884918 GGGTTTAGACTTGA-TTTAAAAAAAAATAACTTCCCCCATCTCAAACTTAATTTTTTTTAAAAGA
1 GGGTTTAGACTCGATTTTAAAAAAAAATAACTTCCCCCATCTCAAACTT-ATTTTTTTTAAAAGA
72884982 AATCCAACTCTATCAAATCCG-ATCAAATGAAAACCAATCTATTTCAAATTTTTTTTATCATA-T
65 AATCCAACTCTATCAAAT-CGAATCAAATGAAAACCAATCTATTTC--ATTTTTTTTATCATACT
** *
72885045 CTATCGGTAATTACTATTACAAATAAATTGAGTTTGATTCTACTCCATTAATTTTTCGTCCATTA
127 CTATCAATAATTACTATTACAAATAAATTGAGTTTGACTCTACTCCATTAATTTTTCGTCCATTA
72885110 ACTAAT
192 ACTAAT
72885116 GCATTTTTAA
Statistics
Matches: 184, Mismatches: 9, Indels: 11
0.90 0.04 0.05
Matches are distributed among these distances:
229 33 0.18
230 117 0.64
231 19 0.10
232 15 0.08
ACGTcount: A:0.36, C:0.17, G:0.08, T:0.39
Consensus pattern (229 bp):
GGGTTTAGACTCGATTTTAAAAAAAAATAACTTCCCCCATCTCAAACTTATTTTTTTTAAAAGAA
ATCCAACTCTATCAAATCGAATCAAATGAAAACCAATCTATTTCATTTTTTTTATCATACTCTAT
CAATAATTACTATTACAAATAAATTGAGTTTGACTCTACTCCATTAATTTTTCGTCCATTAACTA
ATTAGATTTTGTAAATATTTCAAACGGGTAGAAC
Found at i:72886722 original size:3 final size:3
Alignment explanation
Indices: 72886699--72886861 Score: 100
Period size: 3 Copynumber: 53.3 Consensus size: 3
72886689 GGGGAGAGTG
* * *
72886699 TTA TTT TTA ATA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * **
72886746 TTA CTG TTA CTA TTA CTA TTA TTA TATA TATA TTTA TTA CCA TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA T-TA -TTA TTA TTA TTA -TTA
** ** * *
72886795 TTTA TTTA TTA TTA TTA GAA ACA -TA TTG TTA TTT TTA TTA TT- TTA
1 -TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
72886840 TTA TTA TTA TT- TTAA TTA TTA T
1 TTA TTA TTA TTA TT-A TTA TTA T
72886862 CATGGTAATA
Statistics
Matches: 125, Mismatches: 27, Indels: 16
0.74 0.16 0.10
Matches are distributed among these distances:
2 7 0.06
3 96 0.77
4 21 0.17
5 1 0.01
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:72886914 original size:12 final size:12
Alignment explanation
Indices: 72886897--72886922 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
72886887 AAAATAGGGC
72886897 TTTAGCGGCGTT
1 TTTAGCGGCGTT
72886909 TTTAGCGGCGTT
1 TTTAGCGGCGTT
72886921 TT
1 TT
72886923 ATAAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:72887008 original size:41 final size:41
Alignment explanation
Indices: 72886963--72887061 Score: 164
Period size: 40 Copynumber: 2.4 Consensus size: 41
72886953 CAGAGCAATA
72886963 GTAAAACGCCGCTAAAAGACAAAGCAGTAGCGGCGCTTTTG
1 GTAAAACGCCGCTAAAAGACAAAGCAGTAGCGGCGCTTTTG
* * *
72887004 GTAAAACGTCGCT-AAAGACAGAGCATTAGCGGCGCTTTTG
1 GTAAAACGCCGCTAAAAGACAAAGCAGTAGCGGCGCTTTTG
72887044 GTAAAACGCCGCTAAAAG
1 GTAAAACGCCGCTAAAAG
72887062 TCATATAACT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
40 37 0.70
41 16 0.30
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.18
Consensus pattern (41 bp):
GTAAAACGCCGCTAAAAGACAAAGCAGTAGCGGCGCTTTTG
Found at i:72887703 original size:24 final size:24
Alignment explanation
Indices: 72887676--72887724 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
72887666 CGTATATTTA
*
72887676 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTCTATATAAAAATTAAT
72887700 TTAAAAGTCTATATAAAAATTAAT
1 TTAAAAGTCTATATAAAAATTAAT
72887724 T
1 T
72887725 GTTATTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (24 bp):
TTAAAAGTCTATATAAAAATTAAT
Found at i:72888043 original size:15 final size:14
Alignment explanation
Indices: 72888012--72888050 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
72888002 ATTTTAAGGT
*
72888012 TTATGGATTATGAA
1 TTATGGTTTATGAA
*
72888026 TTATGGGTTTATGGA
1 TTAT-GGTTTATGAA
72888041 TTATGGTTTA
1 TTATGGTTTA
72888051 CAGTTTATGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 10 0.45
15 12 0.55
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.49
Consensus pattern (14 bp):
TTATGGTTTATGAA
Found at i:72888063 original size:7 final size:7
Alignment explanation
Indices: 72888004--72888064 Score: 50
Period size: 7 Copynumber: 8.6 Consensus size: 7
72887994 GAGTTACTAT
*
72888004 TTTAAGG
1 TTTATGG
72888011 TTTATGG
1 TTTATGG
* *
72888018 ATTATGA
1 TTTATGG
*
72888025 ATTATGGG
1 TTTAT-GG
72888033 TTTATGG
1 TTTATGG
*
72888040 ATTATGG
1 TTTATGG
**
72888047 TTTACAG
1 TTTATGG
72888054 TTTATGG
1 TTTATGG
72888061 TTTA
1 TTTA
72888065 AGGGTTGGGG
Statistics
Matches: 42, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
7 37 0.88
8 5 0.12
ACGTcount: A:0.25, C:0.02, G:0.25, T:0.49
Consensus pattern (7 bp):
TTTATGG
Found at i:72888077 original size:21 final size:21
Alignment explanation
Indices: 72888055--72888135 Score: 58
Period size: 21 Copynumber: 3.8 Consensus size: 21
72888045 GGTTTACAGT
72888055 TTATGGTTTAAGGGTT-GGGG
1 TTATGGTTTAAGGGTTAGGGG
* *
72888075 TTTAAGG-TTCAGGTGTTAGGGG
1 -TTATGGTTTAAGG-GTTAGGGG
* * * **
72888097 TTAGGGGTTATGGGTTCTGGG
1 TTATGGTTTAAGGGTTAGGGG
72888118 TTATGGATTTAAGGGTTA
1 TTATGG-TTTAAGGGTTA
72888136 TGTTGTATGA
Statistics
Matches: 45, Mismatches: 11, Indels: 7
0.71 0.17 0.11
Matches are distributed among these distances:
20 5 0.11
21 24 0.53
22 16 0.36
ACGTcount: A:0.17, C:0.02, G:0.41, T:0.40
Consensus pattern (21 bp):
TTATGGTTTAAGGGTTAGGGG
Found at i:72888297 original size:14 final size:14
Alignment explanation
Indices: 72888278--72888344 Score: 89
Period size: 14 Copynumber: 4.7 Consensus size: 14
72888268 GTTTGCAGGT
*
72888278 AAAATGTTTTCTGG
1 AAAATGATTTCTGG
*
72888292 AAAATGATTTATGG
1 AAAATGATTTCTGG
* *
72888306 AAAATAATTTCTTGA
1 AAAATGATTTC-TGG
72888321 AAAATGATTTCTGG
1 AAAATGATTTCTGG
72888335 AAAATGATTT
1 AAAATGATTT
72888345 ACTTTTCTGG
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
14 33 0.73
15 12 0.27
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.39
Consensus pattern (14 bp):
AAAATGATTTCTGG
Found at i:72888906 original size:22 final size:21
Alignment explanation
Indices: 72888863--72888907 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
72888853 AATTTAATCT
*
72888863 AATTATTTTAAATATTACTTA
1 AATTATTTTAAAAATTACTTA
* *
72888884 AATTTTTTTAAAAAATTATTTA
1 AATTATTTT-AAAAATTACTTA
72888906 AA
1 AA
72888908 AGTAATATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (21 bp):
AATTATTTTAAAAATTACTTA
Found at i:72889103 original size:10 final size:9
Alignment explanation
Indices: 72889079--72889106 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
72889069 AAAATTTGAA
72889079 AGAAAAAAT
1 AGAAAAAAT
72889088 AGAAAAAAT
1 AGAAAAAAT
72889097 AGAAAAAAT
1 AGAAAAAAT
72889106 A
1 A
72889107 TGTTAGAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.11
Consensus pattern (9 bp):
AGAAAAAAT
Found at i:72891891 original size:15 final size:16
Alignment explanation
Indices: 72891871--72891901 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
72891861 GTTTTTATCT
72891871 TATATATGAT-TAAAA
1 TATATATGATCTAAAA
72891886 TATATATGATCTAAAA
1 TATATATGATCTAAAA
72891902 GCAAGAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (16 bp):
TATATATGATCTAAAA
Found at i:72893239 original size:22 final size:23
Alignment explanation
Indices: 72893197--72893239 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
72893187 TTTCAAAAAT
*
72893197 TAAACATAATATAATATTTAACA
1 TAAAAATAATATAATATTTAACA
*
72893220 TAAAAATAA-ATATTATTTAA
1 TAAAAATAATATAATATTTAA
72893240 TTAAATTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (23 bp):
TAAAAATAATATAATATTTAACA
Found at i:72893332 original size:43 final size:43
Alignment explanation
Indices: 72893266--72893450 Score: 219
Period size: 43 Copynumber: 4.3 Consensus size: 43
72893256 TTTTGTAAGA
* * * *
72893266 TTATTATTTTTAGCGGCGTTTGTGAGAAAAGTGTCGCTAAAGG
1 TTATGATTTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGG
* *
72893309 TTATGATTTTTAGCAGCGTTTGTGAAAAAAGTGCCGCTAAAGG
1 TTATGATTTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGG
* * * *
72893352 TTATGGTCTTTAGTGGTGTTTGTGAAAAAAGCGCCGCTAAAGG
1 TTATGATTTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGG
* * * *
72893395 TCATGGTTTTTAGCGGCGTTTGCG-AAAACGCGCCGCTAAAGG
1 TTATGATTTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGG
* *
72893437 TCATGATCTTTAGC
1 TTATGATTTTTAGC
72893451 TATTTTTTCG
Statistics
Matches: 124, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
42 29 0.23
43 95 0.77
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.33
Consensus pattern (43 bp):
TTATGATTTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGG
Found at i:72895136 original size:3 final size:3
Alignment explanation
Indices: 72895130--72895174 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
72895120 CTCCTCCTCC
72895130 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
72895175 CTTTGCATAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:72896704 original size:6 final size:6
Alignment explanation
Indices: 72896693--72896730 Score: 67
Period size: 6 Copynumber: 6.2 Consensus size: 6
72896683 AATAAAAGGG
72896693 GCAAGT GCAAGT GCAAGT GCAAGT GCAAGT GCCAAGT G
1 GCAAGT GCAAGT GCAAGT GCAAGT GCAAGT G-CAAGT G
72896731 GGAGCTAGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 25 0.81
7 6 0.19
ACGTcount: A:0.32, C:0.18, G:0.34, T:0.16
Consensus pattern (6 bp):
GCAAGT
Found at i:72897080 original size:27 final size:27
Alignment explanation
Indices: 72897042--72897098 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
72897032 GCAAAGATTA
72897042 ATTATGTTGGTAGATTACGGCTACTTC
1 ATTATGTTGGTAGATTACGGCTACTTC
72897069 ATTATGTTGGTAGATTACGGCTACTTC
1 ATTATGTTGGTAGATTACGGCTACTTC
72897096 ATT
1 ATT
72897099 GTTGTTGTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.23, C:0.14, G:0.21, T:0.42
Consensus pattern (27 bp):
ATTATGTTGGTAGATTACGGCTACTTC
Found at i:72900499 original size:19 final size:19
Alignment explanation
Indices: 72900477--72900537 Score: 65
Period size: 19 Copynumber: 3.2 Consensus size: 19
72900467 TAAACAATAA
72900477 ATATATGATAATAATTAAC
1 ATATATGATAATAATTAAC
*
72900496 ATATTATG-TATTAATCT-AC
1 ATA-TATGATAATAAT-TAAC
72900515 -TATAATGATAATAATTAAC
1 ATAT-ATGATAATAATTAAC
72900534 ATAT
1 ATAT
72900538 TATGTATTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 11
0.72 0.04 0.23
Matches are distributed among these distances:
17 1 0.03
18 6 0.18
19 19 0.56
20 8 0.24
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.41
Consensus pattern (19 bp):
ATATATGATAATAATTAAC
Found at i:72900532 original size:38 final size:38
Alignment explanation
Indices: 72900481--72900558 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
72900471 CAATAAATAT
72900481 ATGATAATAATTAACATATTATGTATTAATCTACTATA
1 ATGATAATAATTAACATATTATGTATTAATCTACTATA
72900519 ATGATAATAATTAACATATTATGTATTAATCTACTATA
1 ATGATAATAATTAACATATTATGTATTAATCTACTATA
72900557 AT
1 AT
72900559 AGTATGTGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.45, C:0.08, G:0.05, T:0.42
Consensus pattern (38 bp):
ATGATAATAATTAACATATTATGTATTAATCTACTATA
Found at i:72900548 original size:19 final size:19
Alignment explanation
Indices: 72900488--72900548 Score: 72
Period size: 19 Copynumber: 3.2 Consensus size: 19
72900478 TATATGATAA
72900488 TAATTAACATATTATGTAT
1 TAATTAACATATTATGTAT
* *
72900507 TAATCT-AC-TATAATGATAA
1 TAAT-TAACATATTATG-TAT
72900526 TAATTAACATATTATGTAT
1 TAATTAACATATTATGTAT
72900545 TAAT
1 TAAT
72900549 CTACTATAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
18 7 0.21
19 20 0.59
20 7 0.21
ACGTcount: A:0.44, C:0.07, G:0.05, T:0.44
Consensus pattern (19 bp):
TAATTAACATATTATGTAT
Found at i:72900563 original size:19 final size:19
Alignment explanation
Indices: 72900503--72900563 Score: 56
Period size: 19 Copynumber: 3.2 Consensus size: 19
72900493 AACATATTAT
72900503 GTATTAATCTACTATAAT-
1 GTATTAATCTACTATAATA
* *
72900521 GATAATAAT-TAAC-ATATTA
1 G-TATTAATCT-ACTATAATA
72900540 TGTATTAATCTACTATAATA
1 -GTATTAATCTACTATAATA
72900560 GTAT
1 GTAT
72900564 GTGATATAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 11
0.69 0.08 0.23
Matches are distributed among these distances:
18 6 0.18
19 20 0.61
20 7 0.21
ACGTcount: A:0.43, C:0.08, G:0.07, T:0.43
Consensus pattern (19 bp):
GTATTAATCTACTATAATA
Found at i:72903258 original size:56 final size:57
Alignment explanation
Indices: 72903197--72903308 Score: 156
Period size: 56 Copynumber: 2.0 Consensus size: 57
72903187 TTTTCAGGTC
*
72903197 ATTTTCATTTTGGAGAAAACCACATTCATTTCC-AATGATTCC-ATTTCTCTATTTTA
1 ATTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGATTCCTATTTCTC-ATTTTA
* * * *
72903253 ATTTTCGTTTTTGAGAAAACCATAATCATTTCCAAATGTTTCCTATTTCTCATTTT
1 ATTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGATTCCTATTTCTCATTTT
72903309 TCACCATTTC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
56 29 0.59
57 13 0.27
58 7 0.14
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.46
Consensus pattern (57 bp):
ATTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGATTCCTATTTCTCATTTTA
Found at i:72910463 original size:16 final size:16
Alignment explanation
Indices: 72910450--72910483 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
72910440 CCTTAAATCT
72910450 AACAAAATACAAATAG
1 AACAAAATACAAATAG
72910466 AACAAAATA-ATAATAG
1 AACAAAATACA-AATAG
72910482 AA
1 AA
72910484 TGCACACTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 1 0.06
16 16 0.94
ACGTcount: A:0.71, C:0.09, G:0.06, T:0.15
Consensus pattern (16 bp):
AACAAAATACAAATAG
Found at i:72913573 original size:25 final size:25
Alignment explanation
Indices: 72913539--72913609 Score: 69
Period size: 25 Copynumber: 3.0 Consensus size: 25
72913529 AAACTTACAA
*
72913539 GGAGAAGCAGCAGAGGGCTACCGAC
1 GGAGATGCAGCAGAGGGCTACCGAC
* *
72913564 GGAGATGCAGCA-ATGGGTTGCCGAC
1 GGAGATGCAGCAGA-GGGCTACCGAC
*
72913589 GAAGAT---GCAGAGGGCTACCGA
1 GGAGATGCAGCAGAGGGCTACCGA
72913610 TTTGGGGAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
22 11 0.29
23 1 0.03
24 1 0.03
25 25 0.66
ACGTcount: A:0.30, C:0.21, G:0.39, T:0.10
Consensus pattern (25 bp):
GGAGATGCAGCAGAGGGCTACCGAC
Found at i:72921570 original size:28 final size:27
Alignment explanation
Indices: 72921513--72921664 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
72921503 TAAATTGTGC
*
72921513 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
72921540 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
72921568 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
72921595 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
72921623 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
72921650 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72921665 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:72921577 original size:55 final size:55
Alignment explanation
Indices: 72921513--72921664 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
72921503 TAAATTGTGC
*
72921513 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
72921568 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
72921623 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
72921665 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:72940120 original size:27 final size:28
Alignment explanation
Indices: 72940039--72940132 Score: 127
Period size: 27 Copynumber: 3.4 Consensus size: 28
72940029 GAGATTGGCG
* * * *
72940039 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
72940068 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
72940096 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
72940123 CTGAGTGTGC
1 CTAAGTGTGC
72940133 AGACTTAATA
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 23 0.38
28 22 0.37
29 15 0.25
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:72940147 original size:29 final size:27
Alignment explanation
Indices: 72940064--72940147 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
72940054 TAAATTGTAC
* *
72940064 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
72940092 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
*
72940119 AGCACTGAGTGTGCAGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTAAT-TATAT
72940148 TTTTGAATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 23 0.46
28 22 0.44
29 5 0.10
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:72948138 original size:27 final size:28
Alignment explanation
Indices: 72948057--72948151 Score: 129
Period size: 27 Copynumber: 3.4 Consensus size: 28
72948047 GAGATTGGCG
* * * *
72948057 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
72948086 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
72948114 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
72948141 CTGAGTGTGCG
1 CTAAGTGTGCG
72948152 GACTTAATAT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.39
28 22 0.36
29 15 0.25
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:72948165 original size:29 final size:27
Alignment explanation
Indices: 72948082--72948165 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
72948072 TAAATTGTAC
* *
72948082 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
72948110 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
*
72948137 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTAAT-TATAT
72948166 TTTTGAATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 23 0.46
28 22 0.44
29 5 0.10
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:72951116 original size:20 final size:20
Alignment explanation
Indices: 72951091--72951129 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
72951081 AGGGACTAAA
* *
72951091 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTATAAAATTTG
72951111 ATGAAAAATTATAAAATTT
1 ATGAAAAATTATAAAATTT
72951130 AATGGATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTATAAAATTTG
Found at i:72952122 original size:47 final size:47
Alignment explanation
Indices: 72952033--72952132 Score: 112
Period size: 47 Copynumber: 2.1 Consensus size: 47
72952023 CCAACACACC
* * * * *
72952033 AGTACGGCACTCAATGCCTCATCGGCTTTACTGAAGTAAATAGTAAT
1 AGTACGGCACTCAATACCTCATCGGATTGACTAAAGTAAATAGCAAT
* * *
72952080 AGTACGGTACTCAGTACCTCATCGGATTGGACTAAAGT-AATAGCAGT
1 AGTACGGCACTCAATACCTCATCGGATT-GACTAAAGTAAATAGCAAT
72952127 AGTACG
1 AGTACG
72952133 ACACACATGG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
47 37 0.84
48 7 0.16
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (47 bp):
AGTACGGCACTCAATACCTCATCGGATTGACTAAAGTAAATAGCAAT
Found at i:72953411 original size:3 final size:3
Alignment explanation
Indices: 72953403--72953457 Score: 69
Period size: 3 Copynumber: 18.7 Consensus size: 3
72953393 ATATATTAGT
* *
72953403 TAA TAA TAA TAT TAA TAA TAA TAA TAA TACA TTA TAA TAA T-A TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA
72953448 T-A TAA TAA TA
1 TAA TAA TAA TA
72953458 TTTAATTTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
2 4 0.09
3 39 0.87
4 2 0.04
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:72953441 original size:13 final size:13
Alignment explanation
Indices: 72953423--72953457 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
72953413 ATTAATAATA
*
72953423 ATAATAATACATT
1 ATAATAATACAAT
*
72953436 ATAATAATATAAT
1 ATAATAATACAAT
72953449 ATAATAATA
1 ATAATAATA
72953458 TTTAATTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (13 bp):
ATAATAATACAAT
Found at i:72953621 original size:24 final size:23
Alignment explanation
Indices: 72953571--72953623 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 23
72953561 TTGTCTTCAT
72953571 TTTAATAATTTAATATAAAACTA
1 TTTAATAATTTAATATAAAACTA
*
72953594 --TAATAATTATAATA-AATATCTA
1 TTTAATAATT-TAATATAA-AACTA
72953616 TTTAATAA
1 TTTAATAA
72953624 AAAATACATA
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 10 0.40
22 9 0.36
24 6 0.24
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (23 bp):
TTTAATAATTTAATATAAAACTA
Found at i:72957320 original size:36 final size:36
Alignment explanation
Indices: 72957277--72957348 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
72957267 AAATAAAAAG
72957277 ATAGAAAATTAATGAAGCCTTATTACATAATTTAAA
1 ATAGAAAATTAATGAAGCCTTATTACATAATTTAAA
*
72957313 ATAGAAAATTAATGAGGCCTTATTACATAATTTAAA
1 ATAGAAAATTAATGAAGCCTTATTACATAATTTAAA
72957349 CCCAAAATGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.49, C:0.08, G:0.10, T:0.33
Consensus pattern (36 bp):
ATAGAAAATTAATGAAGCCTTATTACATAATTTAAA
Found at i:72957746 original size:27 final size:28
Alignment explanation
Indices: 72957723--72957788 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
72957713 TGTAAAGCTG
*
72957723 CCAGTAACAGTA-TCTGTGGCAAAGCCA
1 CCAGTAACAGTATTATGTGGCAAAGCCA
*
72957750 CCAGTAATAGTATTATGTGGCAAAGCCA
1 CCAGTAACAGTATTATGTGGCAAAGCCA
72957778 CCAGT-ACAGTA
1 CCAGTAACAGTA
72957789 CACTTACTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
27 16 0.46
28 19 0.54
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (28 bp):
CCAGTAACAGTATTATGTGGCAAAGCCA
Found at i:72965529 original size:27 final size:27
Alignment explanation
Indices: 72965466--72965531 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
72965456 AGCAAAGCTG
* *
72965466 CCAGCAACAGTATCTGTGGCAAACCAA
1 CCAGTAACAGTATATGTGGCAAACCAA
*
72965493 CCAGTAACAGTATTATGTGGCAGAGCCAA
1 CCAGTAACAGTA-TATGTGGCA-AACCAA
72965522 -CAGT-ACAGTA
1 CCAGTAACAGTA
72965532 CACTTCCTCC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
27 17 0.50
28 12 0.35
29 5 0.15
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.18
Consensus pattern (27 bp):
CCAGTAACAGTATATGTGGCAAACCAA
Found at i:72969501 original size:16 final size:17
Alignment explanation
Indices: 72969462--72969493 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
72969452 GATATTTCTA
72969462 TTTAATTATTTATCATC
1 TTTAATTATTTATCATC
72969479 TTTAATTATTT-TCAT
1 TTTAATTATTTATCAT
72969494 TTCTAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTAATTATTTATCATC
Found at i:72979152 original size:50 final size:50
Alignment explanation
Indices: 72979077--72979315 Score: 258
Period size: 50 Copynumber: 4.9 Consensus size: 50
72979067 TGATGCTAGG
* * * *
72979077 GAGATATCATAGCTAGTGTAAGACCATGTCTGGGACATGGCGTTGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
*
72979127 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGACATCGG-CT-
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * *
72979175 -TGATATGTG-TC-AGTGTAAGACCATGTGTGGGACATGGCATCGGCAC-C
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTC
* * * * *
72979222 GATAGATGAGAGCCAGTGTAAGACCATGCCTGAGACATGGCATCGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * *
72979272 GATATACGAGAG-TCAGTGTAAGACCATGCCTGGGACATGGCATC
1 GAGATATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATC
72979316 AACTTTGATG
Statistics
Matches: 159, Mismatches: 22, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
45 30 0.19
46 1 0.01
47 8 0.05
48 5 0.03
49 4 0.03
50 111 0.70
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (50 bp):
GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
Found at i:72979231 original size:95 final size:97
Alignment explanation
Indices: 72979091--72979315 Score: 285
Period size: 95 Copynumber: 2.3 Consensus size: 97
72979081 TATCATAGCT
* * * * *
72979091 AGTGTAAGACCATGTCTGGGACATGGCGTTGGCCTCGAGATATGAGAGCTAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGAGATGAGAGCCAGTGTAAGACCATGC
* * *
72979156 CTGGGACATGACATCGG-CTTGATAT-GTGTC
66 CTGAGACATGACATCGGCCTCGATATAGAGTC
* *
72979186 AGTGTAAGACCATGTGTGGGACATGGCATCGGCAC-CGATAGATGAGAGCCAGTGTAAGACCATG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAGAGATGAGAGCCAGTGTAAGACCATG
*
72979250 CCTGAGACATGGCATCGGCCTCGATATACGAGAGTC
65 CCTGAGACATGACATCGGCCTCGATAT---AGAGTC
*
72979286 AGTGTAAGACCATGCCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
72979316 AACTTTGATG
Statistics
Matches: 111, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
95 71 0.64
96 8 0.07
100 32 0.29
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.22
Consensus pattern (97 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGAGATGAGAGCCAGTGTAAGACCATGC
CTGAGACATGACATCGGCCTCGATATAGAGTC
Found at i:72990752 original size:79 final size:81
Alignment explanation
Indices: 72990616--72990798 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
72990606 TCGAATGATG
* *
72990616 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
72990680 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
72990695 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
72990757 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* * *
72990775 CCCGGGCTATGTCTCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
72990799 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 29 0.33
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:72990807 original size:40 final size:39
Alignment explanation
Indices: 72990616--72990800 Score: 214
Period size: 40 Copynumber: 4.7 Consensus size: 39
72990606 TCGAATGATG
* * *
72990616 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
*
72990656 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
*
72990695 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
72990735 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* * *
72990775 CCCGGGCTATGTCTCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72990801 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 35 0.28
40 83 0.66
41 8 0.06
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:72996014 original size:30 final size:30
Alignment explanation
Indices: 72995979--72996037 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
72995969 CTTTAGCCAT
*
72995979 TTATTTTTCTTAC-AATTTAATTTAATTTTA
1 TTATTTTTATTACTAA-TTAATTTAATTTTA
*
72996009 TTATTTTTATTACTAATTAATTTACTTTT
1 TTATTTTTATTACTAATTAATTTAATTTT
72996038 TCCTTCTCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (30 bp):
TTATTTTTATTACTAATTAATTTAATTTTA
Found at i:73006274 original size:43 final size:43
Alignment explanation
Indices: 73006179--73006297 Score: 150
Period size: 43 Copynumber: 2.8 Consensus size: 43
73006169 CGAGATGTGG
* *
73006179 TTACATGTAAGACCATGTCTGGGACATTAGCATTGTATTGAGA
1 TTACATGTAAGACCATGTCTGGGACATTGGCATTGTAATGAGA
* * *
73006222 TTACGTGTAAAACCATGTCTGGGACATTGGCATTGTTAAT-CGA
1 TTACATGTAAGACCATGTCTGGGACATTGGCATTG-TAATGAGA
* * *
73006265 TTTCATGTAAGACCCTGTCTGGGACAGTGGCAT
1 TTACATGTAAGACCATGTCTGGGACATTGGCAT
73006298 CGATATATGA
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 62 0.95
44 3 0.05
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTGGGACATTGGCATTGTAATGAGA
Found at i:73006321 original size:43 final size:43
Alignment explanation
Indices: 73006179--73006321 Score: 101
Period size: 43 Copynumber: 3.3 Consensus size: 43
73006169 CGAGATGTGG
* * * * * * *
73006179 TTACATGTAAGACCATGTCTGGGACATTAGCATTG-TATTGAGA
1 TTACATATAAGACCCTGTCTGGGACAGTGGCATCGATAAT-CGA
* * * * * * *
73006222 TTACGTGTAAAACCATGTCTGGGACATTGGCATTGTTAATCGA
1 TTACATATAAGACCCTGTCTGGGACAGTGGCATCGATAATCGA
* *
73006265 TTTCATGTAAGACCCTGTCTGGGACAGTGGCATCGATATAT-GA
1 TTACATATAAGACCCTGTCTGGGACAGTGGCATCGATA-ATCGA
*
73006308 TTACATATCAGACC
1 TTACATATAAGACC
73006322 ATATTCGGGA
Statistics
Matches: 83, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
43 78 0.94
44 5 0.06
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.31
Consensus pattern (43 bp):
TTACATATAAGACCCTGTCTGGGACAGTGGCATCGATAATCGA
Found at i:73010290 original size:53 final size:54
Alignment explanation
Indices: 73010109--73010314 Score: 234
Period size: 53 Copynumber: 3.8 Consensus size: 54
73010099 ATTAGGGTTT
* * * * *
73010109 AGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTACAAGGCA
1 AGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGCA
* * * * * *
73010163 AGGAAATCATGTAAGACCATGTCAAGACATGGCACTGATAAACTACTATAAGGCA
1 AGGATACCATGTAAGACCATGTCAAGACATGGCAATGGT-AAGTTCTATAAGGCA
* * * * *
73010218 AAGATCCCATGTAAGACCATGACAAGGCATGGCAATGGTGAGTTC-ATAAGGCA
1 AGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGCA
* *
73010271 AGGATACCACGTAAGACCATGTCATGACATGGCAATGGTAAGTT
1 AGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
73010315 TAAAAAGGAA
Statistics
Matches: 123, Mismatches: 28, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
53 45 0.37
54 35 0.28
55 43 0.35
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (54 bp):
AGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGCA
Found at i:73015952 original size:25 final size:25
Alignment explanation
Indices: 73015923--73015970 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
73015913 TTATAATATG
* * *
73015923 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
73015948 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
73015971 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:73016077 original size:20 final size:20
Alignment explanation
Indices: 73016007--73016069 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
73015997 ATTTTGATAA
73016007 ACATGACATGTATGATATGC
1 ACATGACATGTATGATATGC
73016027 ACATGACATGTATGATATGC
1 ACATGACATGTATGATATGC
*
73016047 ACATGATATGTATGATATGC
1 ACATGACATGTATGATATGC
73016067 ACA
1 ACA
73016070 CGAGATGTTC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (20 bp):
ACATGACATGTATGATATGC
Found at i:73016193 original size:47 final size:47
Alignment explanation
Indices: 73016124--73016221 Score: 171
Period size: 47 Copynumber: 2.1 Consensus size: 47
73016114 AGGAAGTGCA
73016124 AAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTATT
73016171 AAAGGGCTTATGCCCCAGTTATTAAAAAAGGGCTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT-AAAAAGGGCTTTGCCCCAGTTATT
73016219 AAA
1 AAA
73016222 AGAGGCTAGG
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
47 23 0.47
48 16 0.33
49 10 0.20
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
Found at i:73016238 original size:25 final size:24
Alignment explanation
Indices: 73016123--73016242 Score: 174
Period size: 24 Copynumber: 5.0 Consensus size: 24
73016113 AAGGAAGTGC
73016123 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
73016147 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
73016171 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
73016194 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
73016219 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
73016243 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 1, Indels: 11
0.88 0.01 0.11
Matches are distributed among these distances:
23 29 0.33
24 30 0.34
25 21 0.24
26 9 0.10
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:73016499 original size:31 final size:31
Alignment explanation
Indices: 73016436--73016499 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
73016426 CGTTTACAGT
**
73016436 AAAGGCTTCGGCCCAGTAATATGAAATGTGA
1 AAAGGCTTCGGCCCAGTAATATGAAAAATGA
**
73016467 AAAGGCTTCGGCCCAGTGTTATGAAAAATGA
1 AAAGGCTTCGGCCCAGTAATATGAAAAATGA
73016498 AA
1 AA
73016500 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAAAATGA
Found at i:73017324 original size:15 final size:17
Alignment explanation
Indices: 73017294--73017325 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
73017284 AAAAAGGGTA
73017294 TTTTTGAAGATGGTTTT
1 TTTTTGAAGATGGTTTT
73017311 TTTTTG-AGAT-GTTTT
1 TTTTTGAAGATGGTTTT
73017326 GCGGGGAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.33
16 4 0.27
17 6 0.40
ACGTcount: A:0.16, C:0.00, G:0.22, T:0.62
Consensus pattern (17 bp):
TTTTTGAAGATGGTTTT
Found at i:73024002 original size:9 final size:9
Alignment explanation
Indices: 73023988--73024044 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
73023978 TTTAATAAAC
73023988 ATGATATGT
1 ATGATATGT
*
73023997 ATGATATGCAC
1 ATGATATG--T
*
73024008 ATGACATGT
1 ATGATATGT
*
73024017 ATGATATGCAC
1 ATGATATG--T
73024028 ATGATATGT
1 ATGATATGT
73024037 ATGATATG
1 ATGATATG
73024045 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:73024011 original size:20 final size:20
Alignment explanation
Indices: 73023986--73024048 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
73023976 ATTTTAATAA
73023986 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
73024006 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
73024026 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
73024046 ACA
1 ACA
73024049 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:73024129 original size:24 final size:24
Alignment explanation
Indices: 73024102--73024244 Score: 211
Period size: 24 Copynumber: 6.0 Consensus size: 24
73024092 GAGGAAGTGC
73024102 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
73024126 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
73024150 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
73024174 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
73024197 AAAAAAGGATT-TGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
73024221 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
73024245 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 5, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
23 28 0.26
24 66 0.61
25 15 0.14
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:73024196 original size:47 final size:48
Alignment explanation
Indices: 73024102--73024223 Score: 203
Period size: 47 Copynumber: 2.6 Consensus size: 48
73024092 GAGGAAGTGC
73024102 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT-
1 AAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATTA
73024150 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTA
* *
73024198 AAAAAGGATT-TGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
73024224 AGAGGCTAGG
Statistics
Matches: 71, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
47 39 0.55
48 32 0.45
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTA
Found at i:73024219 original size:71 final size:72
Alignment explanation
Indices: 73024103--73024244 Score: 218
Period size: 71 Copynumber: 2.0 Consensus size: 72
73024093 AGGAAGTGCA
* * *
73024103 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTTATGCC-C
1 AAAGGGCTTATGCCCCAGTTATTAAAAAGGATTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTC
73024166 CAGTTATT
65 CAGTTATT
73024174 AAAGGGCTTATGCCCCAGTTATTAAAAAAGGATT-TGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAGGGCTTATGCCCCAGTTATT-AAAAAGGATTATGCCCCAGTTATTAAAAGAGGCTAGGCCTC
73024238 CAGTTAT
65 CAGTTAT
73024245 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
71 46 0.71
72 19 0.29
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.28
Consensus pattern (72 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAAGGATTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCC
AGTTATT
Found at i:73024473 original size:31 final size:31
Alignment explanation
Indices: 73024438--73024501 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
73024428 CATTTACAGT
*
73024438 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAAAATGA
**
73024469 AAAGGCTTCGGCCCAGTGTTATGAAAAATGA
1 AAAGGCTTCGGCCCAGTAATATGAAAAATGA
73024500 AA
1 AA
73024502 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAAAATGA
Found at i:73037708 original size:46 final size:45
Alignment explanation
Indices: 73037655--73037923 Score: 255
Period size: 46 Copynumber: 5.8 Consensus size: 45
73037645 TATTTGGGCA
73037655 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
*** * *
73037701 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAATG
*
73037748 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
*
73037794 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-C--A-GAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGGAA-T--G
* * *
73037839 CATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
**
73037887 -CCTGAACTCGTTGAGTTGAGTCAAAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73037924 GCGGGTTACA
Statistics
Matches: 183, Mismatches: 21, Indels: 38
0.76 0.09 0.16
Matches are distributed among these distances:
42 3 0.02
43 7 0.04
44 3 0.02
45 5 0.03
46 91 0.50
47 59 0.32
48 3 0.02
49 3 0.02
50 6 0.03
51 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:73037770 original size:47 final size:46
Alignment explanation
Indices: 73037651--73037870 Score: 209
Period size: 47 Copynumber: 4.7 Consensus size: 46
73037641 AGGATATTTG
*** *
73037651 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GA-T-
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGAGATGTAACTA
*
73037694 GCGAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
1 G-GCA--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-AGAGATGTAACTA
* *** *
73037744 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATG-GA-T-
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGAGATGTAACTA
*
73037787 GCGAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCCAGAGATGTAACTA
1 G-GCA--TCCGAACTCGTTGAGTTGAGTCCGAGTT-CAGAGATGTAACTA
* *
73037837 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA
73037871 CTTATGGATG
Statistics
Matches: 143, Mismatches: 20, Indels: 25
0.76 0.11 0.13
Matches are distributed among these distances:
43 2 0.01
44 5 0.03
45 1 0.01
46 62 0.43
47 63 0.44
48 2 0.01
49 6 0.04
50 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (46 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGAGATGTAACTA
Found at i:73037915 original size:93 final size:93
Alignment explanation
Indices: 73037651--73037908 Score: 455
Period size: 93 Copynumber: 2.8 Consensus size: 93
73037641 AGGATATTTG
*
73037651 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
*
73037716 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCCAGAGATGTAACTA
73037744 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
73037809 TTGAGTCCGAGTTCCAGAGATGTAACTA
66 TTGAGTCCGAGTTCCAGAGATGTAACTA
* * *
73037837 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG-CCTGAACTCGTTGA
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC-GAACTCGTTGA
73037901 GTTGAGTC
65 GTTGAGTC
73037909 AAAGTTCACT
Statistics
Matches: 159, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
92 2 0.01
93 157 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCCAGAGATGTAACTA
Found at i:73043320 original size:46 final size:44
Alignment explanation
Indices: 73043266--73043535 Score: 240
Period size: 46 Copynumber: 5.9 Consensus size: 44
73043256 ATATTTGGGC
73043266 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
*** * *
73043310 ATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
* *
73043359 ATCCGAGCAT-GTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAA
1 ATCCGAAC-TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A
*** * *
73043404 TATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GC
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
* *
73043452 ATCCGAGCTCGTTGAGTTGGGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* *
73043496 ACGCCTAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 A-TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73043536 GCGGGTTACA
Statistics
Matches: 178, Mismatches: 30, Indels: 34
0.74 0.12 0.14
Matches are distributed among these distances:
43 2 0.01
44 6 0.03
45 5 0.03
46 94 0.53
47 61 0.34
48 3 0.02
49 5 0.03
50 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.29
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:73043382 original size:47 final size:47
Alignment explanation
Indices: 73043313--73043481 Score: 191
Period size: 47 Copynumber: 3.6 Consensus size: 47
73043303 GATGCGAATG
*
73043313 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
* *** * * * **
73043360 TCCGAGCAT-GTTGAGTTAAGTCCGAGTTC-ACTTATGGATGCGA-ATA
1 TCCGAGC-TCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
*
73043406 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
*
73043453 TCCGAGCTCGTTGAGTTGGGTCCGAGTTC
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC
73043482 ACTTATGGAT
Statistics
Matches: 95, Mismatches: 22, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
45 1 0.01
46 33 0.35
47 60 0.63
48 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.28
Consensus pattern (47 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
Found at i:73043422 original size:93 final size:93
Alignment explanation
Indices: 73043263--73043527 Score: 435
Period size: 93 Copynumber: 2.8 Consensus size: 93
73043253 AGGATATTTG
* *
73043263 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATATCCGAACTCGTTGAG
73043328 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
*
73043356 GGCATCCGAGCAT-GTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATATCCGAACTCGTTGA
1 GGCATCCGAGC-TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATATCCGAACTCGTTGA
73043420 GTTGAGTCCGAGTTCGAGAGATGTAACTA
65 GTTGAGTCCGAGTTCGAGAGATGTAACTA
* ** *
73043449 GGCATCCGAGCTCGTTGAGTTGGGTCCGAGTTCACTTATGGATGCGAA-CGCCTAAACTCGTTGA
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATATCC-GAACTCGTTGA
73043513 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
73043528 ACTTATGGGC
Statistics
Matches: 161, Mismatches: 8, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
92 3 0.02
93 157 0.98
94 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATATCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:73057214 original size:48 final size:48
Alignment explanation
Indices: 73057139--73057407 Score: 352
Period size: 48 Copynumber: 5.7 Consensus size: 48
73057129 CACATGGTAG
* * * *
73057139 GATGCGAATGCCATATCCTAGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
*
73057187 AATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
73057235 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* *
73057283 GATGCCAATGCCATGTCCTAGACATGGTTTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * ** *
73057331 GATGCCAATG----G-CCCA-ACTATAGTCTTACACGAAATTACATATC
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATC
* * *
73057374 AATTCCAAAGCCATGTCCCAGACATGGTCTTACA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACA
73057408 CGAGATCGCA
Statistics
Matches: 195, Mismatches: 19, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
42 2 0.01
43 29 0.15
44 1 0.01
47 1 0.01
48 160 0.82
49 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:73065071 original size:40 final size:40
Alignment explanation
Indices: 73065013--73065092 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
73065003 TAATACATAG
*
73065013 AAAATATAACACGTAGTAATCTTCATAGCTTAGTAAGCTC
1 AAAATATAACACGAAGTAATCTTCATAGCTTAGTAAGCTC
73065053 AAAATATAACACGAAGTAATCTTCATAGCTTAGTAAGCTC
1 AAAATATAACACGAAGTAATCTTCATAGCTTAGTAAGCTC
73065093 GTATGTAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.29
Consensus pattern (40 bp):
AAAATATAACACGAAGTAATCTTCATAGCTTAGTAAGCTC
Found at i:73065491 original size:77 final size:77
Alignment explanation
Indices: 73065392--73065599 Score: 310
Period size: 77 Copynumber: 2.7 Consensus size: 77
73065382 GAACTATTTC
* **
73065392 CATGGCCCGAAGCCAAAACATCCGATATGCATGGCCCGAAGCCAAATCGGTATAACTCGCACCCG
1 CATGGCCAGAAGCCAACTCATCCGATATGCATGGCCCGAAGCCAAATCGGTATAACTCGCACCCG
73065457 AAGTGCTAATAT
66 AAGTGCTAATAT
* *** * *
73065469 CATGGCCAGCAGCCAACTCATCCGATATGCATGGTATGAAGCCAAATTGGTATAACTCGTACCCG
1 CATGGCCAGAAGCCAACTCATCCGATATGCATGGCCCGAAGCCAAATCGGTATAACTCGCACCCG
73065534 AAGTGCTAATAT
66 AAGTGCTAATAT
*
73065546 CATGGCCCA-AAGCCAACTCATCTGATATGCATGGCCCGAAGCCAAATCGGTATA
1 CATGG-CCAGAAGCCAACTCATCCGATATGCATGGCCCGAAGCCAAATCGGTATA
73065600 TCATCTTATA
Statistics
Matches: 115, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
77 112 0.97
78 3 0.03
ACGTcount: A:0.32, C:0.28, G:0.21, T:0.20
Consensus pattern (77 bp):
CATGGCCAGAAGCCAACTCATCCGATATGCATGGCCCGAAGCCAAATCGGTATAACTCGCACCCG
AAGTGCTAATAT
Found at i:73071625 original size:24 final size:25
Alignment explanation
Indices: 73071568--73071638 Score: 83
Period size: 24 Copynumber: 2.8 Consensus size: 25
73071558 AGACTCACTG
*
73071568 CAGCTCGTATGAGCTTATCAATATAT
1 CAGCTCGTATGAGCTTA-CTATATAT
* *
73071594 CAGCTCGTATGAGCTTACTGT-TCT
1 CAGCTCGTATGAGCTTACTATATAT
73071618 CAGCTCGTCA-GAGCTTACTAT
1 CAGCTCGT-ATGAGCTTACTAT
73071639 TTCCAGCTTG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
24 20 0.50
25 3 0.08
26 17 0.43
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (25 bp):
CAGCTCGTATGAGCTTACTATATAT
Found at i:73074271 original size:43 final size:43
Alignment explanation
Indices: 73074223--73074308 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
73074213 ATCACATGTA
** *
73074223 TCGCATCCATTATGAACTCGAACCACTCAACGAGCTCGGATGC
1 TCGCATCCACAATGAACTAGAACCACTCAACGAGCTCGGATGC
** * *
73074266 TCGCATCCACAATGAACTAGGGCCACTCAATGAGTTCGGATGC
1 TCGCATCCACAATGAACTAGAACCACTCAACGAGCTCGGATGC
73074309 CACATATATC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (43 bp):
TCGCATCCACAATGAACTAGAACCACTCAACGAGCTCGGATGC
Found at i:73082802 original size:40 final size:40
Alignment explanation
Indices: 73082757--73082903 Score: 242
Period size: 40 Copynumber: 3.7 Consensus size: 40
73082747 CTAAGATCCA
73082757 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCTCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCTCG
73082797 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGT-TCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCT-CG
*
73082837 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCTCG
* **
73082877 AAGGCATTTGTGCAAGTTGTTATATCC
1 AAGGCATTTGTGCGAGTTACTATATCC
73082904 AGCTAAATCC
Statistics
Matches: 101, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
39 1 0.01
40 100 0.99
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCTCG
Found at i:73087274 original size:29 final size:29
Alignment explanation
Indices: 73087211--73087278 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
73087201 TAATCAACCG
73087211 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
73087240 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
73087269 CGCACACTTA
1 CGCACACTTA
73087279 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:73087391 original size:174 final size:174
Alignment explanation
Indices: 73087100--73087427 Score: 586
Period size: 174 Copynumber: 1.9 Consensus size: 174
73087090 AACTCAAGGT
* *
73087100 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCACACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCACACCCTTAATGTAAATAATTTATA
*
73087165 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
73087230 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
73087274 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGG-AAAGGTCGCACCCTTAATGTAAATAATTTAT
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAA-GTCACACCCTTAATGTAAATAATTTAT
73087338 AGAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATG
65 AGAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATG
* *
73087403 TACTTTAAACTCGCACACTTAGTGC
130 CACTTTAAACTCACACACTTAGTGC
73087428 TGTACAATTT
Statistics
Matches: 147, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
173 3 0.02
174 144 0.98
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCACACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:73087419 original size:29 final size:30
Alignment explanation
Indices: 73087380--73087458 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
73087370 CTTAATAATC
73087380 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
73087410 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
73087439 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
73087459 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:73094233 original size:40 final size:40
Alignment explanation
Indices: 73094185--73094350 Score: 289
Period size: 40 Copynumber: 4.2 Consensus size: 40
73094175 GGACTAAGAT
73094185 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
73094225 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTT
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
73094265 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* * *
73094305 CCGAAGGCATTTGTGCAAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
73094344 CCGAAGG
1 CCGAAGG
73094351 TACTTGGGTT
Statistics
Matches: 121, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 15 0.12
40 106 0.88
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:73098730 original size:28 final size:28
Alignment explanation
Indices: 73098690--73098746 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
73098680 GAATCTTAAG
73098690 GAATTTACTATAATTTGTATAACTACTA
1 GAATTTACTATAATTTGTATAACTACTA
73098718 GAATTTACTATAATTTGTATAACTACTA
1 GAATTTACTATAATTTGTATAACTACTA
73098746 G
1 G
73098747 TTTGCTTGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.42
Consensus pattern (28 bp):
GAATTTACTATAATTTGTATAACTACTA
Found at i:73106937 original size:42 final size:41
Alignment explanation
Indices: 73106881--73107027 Score: 143
Period size: 42 Copynumber: 3.5 Consensus size: 41
73106871 GAAATCCAAG
* *
73106881 CTCGTTGAGCGGTCCGAGTTTGTGATATTGTGAGAATCCGAA
1 CTCGTTGAGTGGTCCGAGTTTGTGATA-TGTGAGCATCCGAA
* * * *
73106923 CTTGTTGAGTGGTCCAAGTTTGCGATATATGAGGCATCC-AA
1 CTCGTTGAGTGGTCCGAGTTTGTGATATGTGA-GCATCCGAA
* ** * *
73106964 GCTCGTTGAGTGGCCCGAGTTCATTATGGATGTGAGCATCCGAG
1 -CTCGTTGAGTGGTCCGAGTTTGTGAT--ATGTGAGCATCCGAA
73107008 CTCGTTGAGTGGTCCGAGTT
1 CTCGTTGAGTGGTCCGAGTT
73107028 CATTATGGAT
Statistics
Matches: 84, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
41 6 0.07
42 47 0.56
43 25 0.30
44 6 0.07
ACGTcount: A:0.20, C:0.18, G:0.31, T:0.31
Consensus pattern (41 bp):
CTCGTTGAGTGGTCCGAGTTTGTGATATGTGAGCATCCGAA
Found at i:73107010 original size:43 final size:43
Alignment explanation
Indices: 73106956--73107040 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
73106946 GATATATGAG
73106956 GCATCCAAGCTCGTTGAGTGGCCCGAGTTCATTATGGATGTGA
1 GCATCCAAGCTCGTTGAGTGGCCCGAGTTCATTATGGATGTGA
* *
73106999 GCATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGTG
1 GCATCCAAGCTCGTTGAGTGGCCCGAGTTCATTATGGATGTG
73107041 TTACATGTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.19, C:0.20, G:0.32, T:0.29
Consensus pattern (43 bp):
GCATCCAAGCTCGTTGAGTGGCCCGAGTTCATTATGGATGTGA
Found at i:73109479 original size:13 final size:13
Alignment explanation
Indices: 73109461--73109488 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
73109451 AAAATACATT
73109461 TATTAATTAAAAA
1 TATTAATTAAAAA
73109474 TATTAATTAAAAA
1 TATTAATTAAAAA
73109487 TA
1 TA
73109489 AAAAAGCTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
TATTAATTAAAAA
Found at i:73114341 original size:47 final size:47
Alignment explanation
Indices: 73114224--73114804 Score: 865
Period size: 47 Copynumber: 12.2 Consensus size: 47
73114214 AATTCTAAAT
*
73114224 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
73114273 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAACTGTATATG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
73114320 TGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
73114367 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
73114414 TGTGAATAGGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTG-ATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
73114462 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTG-ATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
73114510 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
*
73114559 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
73114606 TGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
*
73114655 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
73114702 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * ** * * * * *
73114749 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
73114796 TGTGATAAG
1 TGTGATAAG
73114805 TCCCGAAGGG
Statistics
Matches: 489, Mismatches: 38, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
47 268 0.55
48 93 0.19
49 128 0.26
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:73114414 original size:96 final size:94
Alignment explanation
Indices: 73114227--73114789 Score: 853
Period size: 96 Copynumber: 5.9 Consensus size: 94
73114217 TCTAAATTGT
73114227 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGC
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCTTAATGGC
*
73114292 CGATGTGATGAATGTGAAACTGTATATGTG
65 CGATGTGATGAATGTGAAAGTGTATATGTG
*
73114322 CGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCTTAATGGC
1 -GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCTTAATGGC
73114386 CGATGTGATGAATGTGAAAGTGTATATATGTG
65 CGATGTGATGAATGTGAAAGTG--TATATGTG
* * * * *
73114418 AATAGGGCTTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGAATAGGGCCTAATGGC
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTG-ATAAGGCTTAATGGC
*
73114482 CGATGTGATGAATGTGAAAGTGTATATATG
65 CGATGTGATGAATGTGAAAGTGTATATGTG
73114512 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGG
1 -GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCTTAATGG
73114577 CCGATGTGATGAATGTGAAAGTGTATATGTG
64 CCGATGTGATGAATGTGAAAGTGTATATGTG
*
73114608 CGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGG
1 -GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCTTAATGG
*
73114673 CCGATGTGATGAATGTGAAAGTGTATATGCG
64 CCGATGTGATGAATGTGAAAGTGTATATGTG
* * * ** *
73114704 TGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGACAGGGCCGAGTGGC
1 -GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCTTAATGGC
* *
73114768 CAATGTGATGGATGTGAAAGTG
65 CGATGTGATGAATGTGAAAGTG
73114790 CATAAATGTG
Statistics
Matches: 433, Mismatches: 28, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
94 93 0.21
95 79 0.18
96 251 0.58
97 10 0.02
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (94 bp):
GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCTTAATGGCC
GATGTGATGAATGTGAAAGTGTATATGTG
Found at i:73114475 original size:143 final size:142
Alignment explanation
Indices: 73114224--73114804 Score: 905
Period size: 143 Copynumber: 4.1 Consensus size: 142
73114214 AATTCTAAAT
73114224 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCTTAAT
* *
73114289 GGCCGATGTGATGAATGTGAAACTGTATATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGT
65 GGCCGATGTGATGAATGTGAAAGTGTATATATGCGATAAGGCCTAATAGCCGATGTGATGAATGT
73114354 GAAAGTGTATATA
130 GAAAGTGTATATA
* *
73114367 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGAATAGGGCTTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTG-ATAAGGCTTAAT
* * *
73114431 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCGATGTGATGAATG
65 GGCCGATGTGATGAATGTGAAAGTGTATATATGCG-ATAAGGCCTAATAGCCGATGTGATGAATG
73114496 TGAAAGTGTATATA
129 TGAAAGTGTATATA
73114510 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCTTAAT
*
73114575 GGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGT
65 GGCCGATGTGATGAATGTGAAAGTGTATATATGCGATAAGGCCTAATAGCCGATGTGATGAATGT
73114640 GAAAGTGTATATATA
130 GAAAGTG--TATATA
* **
73114655 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG-TATATGCGTGATAAGGCTTAATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCTTAATG
* * * * * * * *
73114719 GCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATGGATGTG
66 GCCGATGTGATGAATGTGAAAGTGTATATATGCGATAAGGCCTAATAGCCGATGTGATGAATGTG
* *
73114784 AAAGTGCATAAA
131 AAAGTGTATATA
73114796 TGTGATAAG
1 TGTGATAAG
73114805 TCCCGAAGGG
Statistics
Matches: 405, Mismatches: 27, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
141 23 0.06
142 43 0.11
143 239 0.59
144 44 0.11
145 56 0.14
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (142 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCTTAATG
GCCGATGTGATGAATGTGAAAGTGTATATATGCGATAAGGCCTAATAGCCGATGTGATGAATGTG
AAAGTGTATATA
Found at i:73114978 original size:37 final size:37
Alignment explanation
Indices: 73114922--73115000 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
73114912 TCGAGCTCTA
* * *
73114922 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
73114959 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
73114996 AAGAC
1 AAGAC
73115001 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:73120734 original size:31 final size:31
Alignment explanation
Indices: 73120690--73120761 Score: 108
Period size: 31 Copynumber: 2.3 Consensus size: 31
73120680 AAAATTGTAA
* *
73120690 TTTAAGCACTGTTATTATATATTTTTATCAT
1 TTTAATCACTGTTATTATATACTTTTATCAT
* *
73120721 TTTAATCAGTGTTATTATATACTTTTATTAT
1 TTTAATCACTGTTATTATATACTTTTATCAT
73120752 TTTAATCACT
1 TTTAATCACT
73120762 CGATGTTAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.29, C:0.10, G:0.06, T:0.56
Consensus pattern (31 bp):
TTTAATCACTGTTATTATATACTTTTATCAT
Found at i:73122221 original size:26 final size:27
Alignment explanation
Indices: 73122174--73122230 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
73122164 AAGGCCAATC
* *
73122174 TTTCAAAGAATGCCACAGAGGCTTCCA
1 TTTCAAAGAATGCCAAAAAGGCTTCCA
* *
73122201 TTTCAAA-TATGCCAAAAAGGCTTTCA
1 TTTCAAAGAATGCCAAAAAGGCTTCCA
73122227 TTTC
1 TTTC
73122231 CTGGAGTGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (27 bp):
TTTCAAAGAATGCCAAAAAGGCTTCCA
Found at i:73125182 original size:38 final size:38
Alignment explanation
Indices: 73125101--73125329 Score: 318
Period size: 38 Copynumber: 6.0 Consensus size: 38
73125091 GAATCCAGTC
* * * *
73125101 ACCAGCACAAAGCCTGCAGGACTTTAAGCTCGGATATAAT
1 ACCAGCACTAAGCCTGCGGGA-TTTAA-CCCGGATATATT
73125141 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATATT
1 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATATT
*
73125179 ACCAGCA-TGAAGCCTGCGGGATTTAACCCAGATATATT
1 ACCAGCACT-AAGCCTGCGGGATTTAACCCGGATATATT
*
73125217 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
1 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATATT
73125255 ACCAGCA-TGAAGCCTGCGGGATTTAACCCGGATATATT
1 ACCAGCACT-AAGCCTGCGGGATTTAACCCGGATATATT
* * * *
73125293 ACCAGCACGAAGCTTGCGGGACTTAACTCGGATATAT
1 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAT
73125330 ATCGACTGAT
Statistics
Matches: 173, Mismatches: 12, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
37 1 0.01
38 148 0.86
39 5 0.03
40 19 0.11
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (38 bp):
ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATATT
Found at i:73125224 original size:76 final size:76
Alignment explanation
Indices: 73125101--73125329 Score: 350
Period size: 76 Copynumber: 3.0 Consensus size: 76
73125091 GAATCCAGTC
** * * * *
73125101 ACCAGCACAAAGCCTGCAGGACTTTAAGCTCGGATATAATACCAGCACTAAGCCTGCGGGATTTA
1 ACCAGCATGAAGCCTGCGGGA-TTTAA-CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTA
73125166 ACCCGGATATATT
64 ACCCGGATATATT
*
73125179 ACCAGCATGAAGCCTGCGGGATTTAACCCAGATATATTACCAGCACGAAGCCTGCGGGATTTAAC
1 ACCAGCATGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAAC
73125244 CCGGATATATT
66 CCGGATATATT
* *
73125255 ACCAGCATGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCTTGCGGGACTTAAC
1 ACCAGCATGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAAC
*
73125320 TCGGATATAT
66 CCGGATATAT
73125330 ATCGACTGAT
Statistics
Matches: 140, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
76 117 0.84
77 5 0.04
78 18 0.13
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (76 bp):
ACCAGCATGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAAC
CCGGATATATT
Found at i:73131434 original size:28 final size:28
Alignment explanation
Indices: 73131368--73131495 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
73131358 CATGAGATTG
* * **
73131368 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
73131397 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
73131425 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
73131454 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
73131482 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
73131496 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:73131457 original size:57 final size:57
Alignment explanation
Indices: 73131368--73131495 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
73131358 CATGAGATTG
*
73131368 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
73131425 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
73131482 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
73131496 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:73151506 original size:9 final size:9
Alignment explanation
Indices: 73151488--73151524 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
73151478 TATAGTTTGA
73151488 TATTCGAAT
1 TATTCGAAT
*
73151497 TATTCAAAT
1 TATTCGAAT
*
73151506 TATTCGAGT
1 TATTCGAAT
73151515 TATTCGAAT
1 TATTCGAAT
73151524 T
1 T
73151525 TGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:73151584 original size:9 final size:9
Alignment explanation
Indices: 73151570--73151604 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
73151560 AAAATCGAGT
73151570 TAACTCGAA
1 TAACTCGAA
*
73151579 TAACTCGAT
1 TAACTCGAA
73151588 TAACTCGAA
1 TAACTCGAA
73151597 TAACTCGA
1 TAACTCGA
73151605 TTCGTTTGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.26
Consensus pattern (9 bp):
TAACTCGAA
Found at i:73151592 original size:18 final size:18
Alignment explanation
Indices: 73151564--73151606 Score: 77
Period size: 18 Copynumber: 2.3 Consensus size: 18
73151554 TTTGAAAAAA
73151564 TCGAGTTAACTCGAATAAC
1 TCGA-TTAACTCGAATAAC
73151583 TCGATTAACTCGAATAAC
1 TCGATTAACTCGAATAAC
73151601 TCGATT
1 TCGATT
73151607 CGTTTGACTC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 20 0.83
19 4 0.17
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (18 bp):
TCGATTAACTCGAATAAC
Found at i:73152027 original size:41 final size:41
Alignment explanation
Indices: 73151982--73152081 Score: 182
Period size: 41 Copynumber: 2.4 Consensus size: 41
73151972 TAGACGGGCT
*
73151982 TGCTCACACAAGCTGTCAGTCAAGAAGTAGCTGCACAGTAC
1 TGCTCACACAAGCTGTCAGTCAAGAAGTAGCTACACAGTAC
73152023 TGCTCACACAAGCTGTCAGTCAAGAAGTAGCTACACAGTAC
1 TGCTCACACAAGCTGTCAGTCAAGAAGTAGCTACACAGTAC
*
73152064 TGCTTACACAAGCTGTCA
1 TGCTCACACAAGCTGTCA
73152082 AGTATACTCA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 57 1.00
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (41 bp):
TGCTCACACAAGCTGTCAGTCAAGAAGTAGCTACACAGTAC
Found at i:73159633 original size:40 final size:40
Alignment explanation
Indices: 73159578--73159886 Score: 528
Period size: 40 Copynumber: 7.7 Consensus size: 40
73159568 TGAGCATTGG
73159578 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
73159618 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
73159658 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* *
73159698 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
73159738 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* *
73159778 AATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGAT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* *
73159818 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * *
73159858 GATATGTCCGGGTTAAGACCCGAAGGCAA
1 AATATATCCGGGCTAAGACCCGAAGGCAA
73159887 ATGTGTTTGC
Statistics
Matches: 257, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 257 1.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (40 bp):
AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
Found at i:73168333 original size:40 final size:40
Alignment explanation
Indices: 73168278--73168579 Score: 486
Period size: 40 Copynumber: 7.6 Consensus size: 40
73168268 ATGAGCATTG
73168278 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
73168318 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
73168358 AATATATCCGGGCT-AGACCCG-AGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
73168396 GATATATCCGGGCTAAGACCCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGA-CCCGAAGGCAATTATGCGAGTT
*
73168437 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* *
73168477 AATATATCC-GGCTATGACCCGAAGGCAATTATGCGAGAT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* *
73168516 GATAT-TCCGGGCTAAGACCCGAAGGCAATTATGCAAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * *
73168555 GATATGTCCGGGTTAAGACCCGAAG
1 AATATATCCGGGCTAAGACCCGAAG
73168580 ACAAATGTGT
Statistics
Matches: 248, Mismatches: 9, Indels: 10
0.93 0.03 0.04
Matches are distributed among these distances:
38 33 0.13
39 74 0.30
40 106 0.43
41 35 0.14
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.23
Consensus pattern (40 bp):
AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
Found at i:73168496 original size:119 final size:119
Alignment explanation
Indices: 73168279--73168579 Score: 518
Period size: 119 Copynumber: 2.5 Consensus size: 119
73168269 TGAGCATTGA
*
73168279 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
*
73168344 CAATTATGCGAGTTAATATATCCGGGCTAGACCCG-AGGCAATTATGCGAGTTG
66 CAATTATGCGAGTTAATATATCCGGGCTAGACCCGAAGGCAATTATGCGAGATG
73168397 ATATATCCGGGCTAAGACCCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
1 ATATATCCGGGCTAAGA-CCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
73168462 GCAATTATGCGAGTTAATATATCC-GGCTATGACCCGAAGGCAATTATGCGAGATG
65 GCAATTATGCGAGTTAATATATCCGGGCTA-GACCCGAAGGCAATTATGCGAGATG
* * *
73168517 ATAT-TCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATGTCCGGGTTAAGACCCGAAG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
73168580 ACAAATGTGT
Statistics
Matches: 175, Mismatches: 5, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
118 66 0.38
119 88 0.50
120 21 0.12
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.23
Consensus pattern (119 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
CAATTATGCGAGTTAATATATCCGGGCTAGACCCGAAGGCAATTATGCGAGATG
Found at i:73168572 original size:159 final size:158
Alignment explanation
Indices: 73168279--73168579 Score: 507
Period size: 159 Copynumber: 1.9 Consensus size: 158
73168269 TGAGCATTGA
73168279 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAGG
* *
73168344 CAATTATGCGAGTTAATATATCCGGGCTAGACCCGAGGCAATTATGCGAGTTGATATATCCGGGC
66 CAATTATGCGAGATAATATATCCGGGCTAGACCCGAGGCAATTATGCAAGTTGATATATCCGGGC
73168409 TAAGACCCCGAAGGCAATTATGCGAGTTG
131 TAAGA-CCCGAAGGCAATTATGCGAGTTG
*
73168438 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATATCC-GGCTATGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAGG
* *
73168502 CAATTATGCGAGATGATAT-TCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATGTCCGG
66 CAATTATGCGAGATAATATATCCGGGCT-AGACCCG-AGGCAATTATGCAAGTTGATATATCCGG
*
73168566 GTTAAGACCCGAAG
129 GCTAAGACCCGAAG
73168580 ACAAATGTGT
Statistics
Matches: 134, Mismatches: 6, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
157 8 0.06
158 46 0.34
159 80 0.60
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.23
Consensus pattern (158 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAGG
CAATTATGCGAGATAATATATCCGGGCTAGACCCGAGGCAATTATGCAAGTTGATATATCCGGGC
TAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:73198939 original size:16 final size:16
Alignment explanation
Indices: 73198920--73198950 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73198910 CTTCTTCACT
73198920 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
73198936 TACTTACTTACTTAA
1 TACTCACTTACTTAA
73198951 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:73198956 original size:20 final size:20
Alignment explanation
Indices: 73198917--73198956 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
73198907 AAACTTCTTC
* *
73198917 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
73198937 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
73198957 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Done.