Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 222 of 333
Found at i:73199379 original size:55 final size:54
Alignment explanation
Indices: 73199142--73199396 Score: 233
Period size: 55 Copynumber: 4.8 Consensus size: 54
73199132 ACATGGGTAC
* * * *
73199142 CTTACC-ATTTCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TTA-AAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* *
73199191 CTTACC-ATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* * * * *
73199244 CTCACCAA-TGCCATGCCTTGGCATGGTCTCACATGGGA-CCTTTGCCTTATAATAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTA-GA-AA
* * * *
73199299 CTTATCAA-TGACATGTCTTGACATGGTCTTACATGGTATCCTTGCCTCAGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* * *
73199352 CCTTACCAATTTCCATGCCTTGGCATGGTCATACATGGTATCCTT
1 -CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
73199397 AAACCCTAAT
Statistics
Matches: 167, Mismatches: 27, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
49 38 0.23
52 5 0.03
53 43 0.26
54 9 0.05
55 70 0.42
56 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (54 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:73204104 original size:21 final size:22
Alignment explanation
Indices: 73204065--73204105 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
73204055 GTTGAATTGT
73204065 CACACGGGCGTGTTGCCCTTCC
1 CACACGGGCGTGTTGCCCTTCC
*
73204087 CACATGGGCGTG-TGCCCTT
1 CACACGGGCGTGTTGCCCTT
73204106 GTGTTAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.10, C:0.37, G:0.29, T:0.24
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCTTCC
Found at i:73225661 original size:40 final size:40
Alignment explanation
Indices: 73225616--73225695 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
73225606 TACTTGTATT
73225616 TTGAGTGTAAGTGATAGGGAAGCCATCCTATGCTCATTGA
1 TTGAGTGTAAGTGATAGGGAAGCCATCCTATGCTCATTGA
73225656 TTGAGTGTAAGTGATAGGGAAGCCATCCTATGCTCATTGA
1 TTGAGTGTAAGTGATAGGGAAGCCATCCTATGCTCATTGA
73225696 ATGTATTACC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (40 bp):
TTGAGTGTAAGTGATAGGGAAGCCATCCTATGCTCATTGA
Found at i:73233661 original size:40 final size:40
Alignment explanation
Indices: 73233616--73233803 Score: 279
Period size: 40 Copynumber: 4.7 Consensus size: 40
73233606 ATTTGATGTG
* * * *
73233616 TGTATCCGGGCTTAAAGACCCGCAGGCT-TCGTGATGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTAT-ATGCTAGAAT
* *
73233656 GGTATCTGGGTTTAAAGACCCGCAGGCTATATGCTAGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTAGAAT
*
73233696 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTAGAGT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTAGAAT
*
73233736 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTAGAAT
*
73233776 TGTATCCGGGTTTAAAGACCCGTAGGCT
1 TGTATCCGGGTTTAAAGACCCGCAGGCT
73233804 TCTTACTAGA
Statistics
Matches: 135, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 134 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTAGAAT
Found at i:73233749 original size:80 final size:80
Alignment explanation
Indices: 73233616--73233842 Score: 289
Period size: 80 Copynumber: 2.9 Consensus size: 80
73233606 ATTTGATGTG
* * * *
73233616 TGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGATGGAATGGTATCTGGGTTTAAAGACCCGCAG
1 TGTATCCGGGTTTAAAGACCCGCAGGCTTCATGATAGAATGGTATCCGGGTTTAAAGACCCGCAG
73233681 GCTATATGCTAGAAT
66 GCTATATGCTAGAAT
* * *
73233696 TGTATCCGGGTTTAAAGACCCGCAGGCTAT-ATGCTAGAGTTGTATCCGGGTTTAAAGACCCGCA
1 TGTATCCGGGTTTAAAGACCCGCAGGCT-TCATGATAGAATGGTATCCGGGTTTAAAGACCCGCA
*
73233760 GGCTATATGCTGGAAT
65 GGCTATATGCTAGAAT
* * * ** *
73233776 TGTATCCGGGTTTAAAGACCCGTAGGCTTC-TTACTAGAATGGAATCTAGG-TTAAAGACCCGTA
1 TGTATCCGGGTTTAAAGACCCGCAGGCTTCATGA-TAGAATGGTATCCGGGTTTAAAGACCCGCA
73233839 GGCT
65 GGCT
73233843 CGTGTTAGAA
Statistics
Matches: 127, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
79 18 0.14
80 108 0.85
81 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (80 bp):
TGTATCCGGGTTTAAAGACCCGCAGGCTTCATGATAGAATGGTATCCGGGTTTAAAGACCCGCAG
GCTATATGCTAGAAT
Found at i:73248802 original size:106 final size:106
Alignment explanation
Indices: 73248557--73249149 Score: 679
Period size: 106 Copynumber: 5.6 Consensus size: 106
73248547 ACAAGTGATA
* * * *
73248557 ATATGATAAAGGTTAGCTAATTTAATATCGCAATCTAAGTTTCTTTGAGTTAGTTGATTTAAGAT
1 ATATTATAAAGGTTAGTTAATTTAATATCGCAACCTAAGTTTCTTTGAGTTAGCTGATTTAAGAT
* ** * * *
73248622 CGCAACTCCTAAACA-A-CTTGATGACCTATATTCACAACTG
66 TGCAACTCCTAAA-ATAGCTCAATAACCTACATTCACAGCTG
* *
73248662 ATATTATAAAGGTTAGTTAATTTAATATCACAACCTATGTTTCTTTGAGTTAGCTGATTTAAGAT
1 ATATTATAAAGGTTAGTTAATTTAATATCGCAACCTAAGTTTCTTTGAGTTAGCTGATTTAAGAT
* *
73248727 TGCAACTCCTAAAATAGCTCAATAACCTACATTTACAGTTG
66 TGCAACTCCTAAAATAGCTCAATAACCTACATTCACAGCTG
* * * * *
73248768 ATATTATAAAGGTTAGTTTATTTAAGACCACAACCTAAGTTTCTTTGAGTTAGCTGATTTGAGAT
1 ATATTATAAAGGTTAGTTAATTTAATATCGCAACCTAAGTTTCTTTGAGTTAGCTGATTTAAGAT
* * **
73248833 TGCAACTCCTAAAACATCTCGCTAACCTACATTCACAGCTG
66 TGCAACTCCTAAAATAGCTCAATAACCTACATTCACAGCTG
* * * * *
73248874 ATATTATAAAAGTTAGCTAATTTGATATCGCAACCTAAGCTTCTTTAAGTTAGCTGATTTAAGAT
1 ATATTATAAAGGTTAGTTAATTTAATATCGCAACCTAAGTTTCTTTGAGTTAGCTGATTTAAGAT
* * * * ***
73248939 CGTAACTCTTAAAATAGCTCAATGACCTATGCTCACAGCTG
66 TGCAACTCCTAAAATAGCTCAATAACCTACATTCACAGCTG
* * *
73248980 ATATTATAAAGGTTAGTTGATTTAAGATCGCAACCTAAGTTTCTTTGAGTTAGCTGATTTGAGAT
1 ATATTATAAAGGTTAGTTAATTTAATATCGCAACCTAAGTTTCTTTGAGTTAGCTGATTTAAGAT
* * * *
73249045 TGCAACTCCTAAAATAGCTCACTGACCCT-CGTTCACAGCTA
66 TGCAACTCCTAAAATAGCTCAAT-AACCTACATTCACAGCTG
* * * * * * * * * *
73249086 ATGTGATAAAGGTTAGCTGATTTAAAATCACAACCTAAGTTTATTTGAATTCGCTGCTTTAAGA
1 ATATTATAAAGGTTAGTTAATTTAATATCGCAACCTAAGTTTCTTTGAGTTAGCTGATTTAAGA
73249150 ACACAACTCT
Statistics
Matches: 412, Mismatches: 73, Indels: 5
0.84 0.15 0.01
Matches are distributed among these distances:
104 1 0.00
105 72 0.17
106 336 0.82
107 3 0.01
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (106 bp):
ATATTATAAAGGTTAGTTAATTTAATATCGCAACCTAAGTTTCTTTGAGTTAGCTGATTTAAGAT
TGCAACTCCTAAAATAGCTCAATAACCTACATTCACAGCTG
Found at i:73251822 original size:28 final size:28
Alignment explanation
Indices: 73251765--73251943 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
73251755 TAAATTGTGC
*
73251765 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
73251792 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
73251820 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
73251848 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
73251875 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* * *
73251903 AGCACT-AGTGTGCGAG-CTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
73251929 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73251944 GACTTAATAT
Statistics
Matches: 145, Mismatches: 4, Indels: 6
0.94 0.03 0.04
Matches are distributed among these distances:
26 14 0.10
27 61 0.42
28 70 0.48
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:73251880 original size:83 final size:81
Alignment explanation
Indices: 73251765--73251943 Score: 286
Period size: 83 Copynumber: 2.2 Consensus size: 81
73251755 TAAATTGTGC
73251765 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACT-AGT
* *
73251830 GTGCGAGTTTGACTATGT
65 GTGCGAG-CTGACTATAT
* *
73251848 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAGTG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAGTG
*
73251913 TGCGAGCTGATTATAT
66 TGCGAGCTGACTATAT
*
73251929 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73251944 GACTTAATAT
Statistics
Matches: 90, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
81 21 0.23
82 10 0.11
83 59 0.66
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.31
Consensus pattern (81 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAGTG
TGCGAGCTGACTATAT
Found at i:73259998 original size:28 final size:28
Alignment explanation
Indices: 73259941--73260121 Score: 267
Period size: 28 Copynumber: 6.5 Consensus size: 28
73259931 TAAATTGTGC
*
73259941 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
73259968 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
73259996 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
73260024 AGCATTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
73260052 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
73260080 AGCACTAGGTGTGCGAG-CTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
73260107 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73260122 GACTTAATAT
Statistics
Matches: 142, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
27 37 0.26
28 105 0.74
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:73260057 original size:84 final size:83
Alignment explanation
Indices: 73259916--73260121 Score: 288
Period size: 84 Copynumber: 2.5 Consensus size: 83
73259906 GAGATTGGCG
* * * *
73259916 CTAAGTGTGCGGGTTTAAATTGTGCAGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTG
1 CTAAGTGTGCGAGTTT-GATTATGTAGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTG
73259981 CGAGTTTGACTATGTAGCA
65 CGAGTTTGACTATGTAGCA
* *
73260000 CTAAGTGTGCGAGTTTGATTATGTAGCATTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTG
1 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTG
*
73260065 CGAGTTTGATTATGTAGCA
65 CGAGTTTGACTATGTAGCA
* * * *
73260084 CTAGGTGTGCGAG-CTGATTATATAGCACTGAGTGTGCG
1 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCG
73260122 GACTTAATAT
Statistics
Matches: 109, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
83 41 0.38
84 68 0.62
ACGTcount: A:0.25, C:0.13, G:0.30, T:0.33
Consensus pattern (83 bp):
CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGC
GAGTTTGACTATGTAGCA
Found at i:73270905 original size:44 final size:42
Alignment explanation
Indices: 73270850--73270949 Score: 121
Period size: 44 Copynumber: 2.3 Consensus size: 42
73270840 CGATATGTGT
* *
73270850 TTTCATGTAAGACCACATCTGGGACATTGGCATC-AATTTGAGA
1 TTTCGTGTAAGACCACACCTGGGACATTGGCATCGAATTT--GA
** *
73270893 TTTACGTGTAAGACCATGCCTGGGACATTGGCATCGTATTTGA
1 TTT-CGTGTAAGACCACACCTGGGACATTGGCATCGAATTTGA
73270936 TTTCGTGTAAGACC
1 TTTCGTGTAAGACC
73270950 TTGTAACATC
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
42 11 0.22
43 8 0.16
44 27 0.54
45 4 0.08
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (42 bp):
TTTCGTGTAAGACCACACCTGGGACATTGGCATCGAATTTGA
Found at i:73272357 original size:53 final size:53
Alignment explanation
Indices: 73272258--73272362 Score: 124
Period size: 53 Copynumber: 2.0 Consensus size: 53
73272248 ATAAACTACG
* * * * *
73272258 ATAAGGCAAAGATCCCATGTAAGACCATGCTAAGGCATAGCGATGGTGAGTTC
1 ATAAGGCAAAGATACCACGTAAGACCATGCTAAGACATAGCAATGGTAAGTTC
*
73272311 ATAAGGCAAGGATACCACGTAAGACCATG-TCAAGACAT-GACAATGGTAAGTT
1 ATAAGGCAAAGATACCACGTAAGACCATGCT-AAGACATAG-CAATGGTAAGTT
73272363 TAAAAAGGAA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
52 2 0.05
53 42 0.95
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (53 bp):
ATAAGGCAAAGATACCACGTAAGACCATGCTAAGACATAGCAATGGTAAGTTC
Found at i:73274199 original size:28 final size:28
Alignment explanation
Indices: 73274142--73274321 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
73274132 TAAATTGTGC
*
73274142 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
73274169 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
73274197 AGCACTAAGTGTGCAAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
73274225 AGCACTAAGTGTGCGAG-TTCACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
73274252 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
73274280 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
73274307 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73274322 GACTTAATAT
Statistics
Matches: 143, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
27 65 0.45
28 78 0.55
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:73274206 original size:55 final size:54
Alignment explanation
Indices: 73274142--73274321 Score: 263
Period size: 55 Copynumber: 3.3 Consensus size: 54
73274132 TAAATTGTGC
73274142 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGT
*
73274197 AGCACTAAGTGTGC-AAGTTTGACTATGTAGCACTAAGTGTGCGAGTTCACTATGT
1 AGCACTAAGTGTGCGAA--TTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
* * * *
73274252 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
73274307 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73274322 GACTTAATAT
Statistics
Matches: 114, Mismatches: 7, Indels: 8
0.88 0.05 0.06
Matches are distributed among these distances:
54 2 0.02
55 84 0.74
56 28 0.25
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (54 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
Found at i:73274281 original size:83 final size:82
Alignment explanation
Indices: 73274142--73274321 Score: 288
Period size: 83 Copynumber: 2.2 Consensus size: 82
73274132 TAAATTGTGC
*
73274142 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTCACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
73274207 GTGCAAGTTTGACTATGT
66 GTGCAAG-TTGACTATAT
* *
73274225 AGCACTAAGTGTGCGAGTTCACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTCACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
* *
73274290 GTGCGAGTTGATTATAT
66 GTGCAAGTTGACTATAT
*
73274307 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73274322 GACTTAATAT
Statistics
Matches: 90, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
82 22 0.24
83 68 0.76
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAATTCACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
GTGCAAGTTGACTATAT
Found at i:73282353 original size:28 final size:28
Alignment explanation
Indices: 73282296--73282475 Score: 294
Period size: 28 Copynumber: 6.5 Consensus size: 28
73282286 TAAATTGTGC
*
73282296 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
73282323 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
73282351 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
73282379 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
73282406 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
73282434 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
73282461 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73282476 GACTTAATAT
Statistics
Matches: 147, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
27 66 0.45
28 81 0.55
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:73282360 original size:55 final size:55
Alignment explanation
Indices: 73282296--73282475 Score: 299
Period size: 55 Copynumber: 3.3 Consensus size: 55
73282286 TAAATTGTGC
*
73282296 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGT
73282351 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
* * *
73282406 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
73282461 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73282476 GACTTAATAT
Statistics
Matches: 119, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
55 92 0.77
56 27 0.23
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
Found at i:73282435 original size:83 final size:82
Alignment explanation
Indices: 73282296--73282475 Score: 306
Period size: 83 Copynumber: 2.2 Consensus size: 82
73282286 TAAATTGTGC
73282296 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
73282361 GTGCGAGTTTGACTATGT
66 GTGCGAG-TTGACTATAT
* *
73282379 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
73282444 GTGCGAGTTGATTATAT
66 GTGCGAGTTGACTATAT
*
73282461 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73282476 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
82 22 0.24
83 70 0.76
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
GTGCGAGTTGACTATAT
Found at i:73290499 original size:47 final size:47
Alignment explanation
Indices: 73290445--73290733 Score: 362
Period size: 47 Copynumber: 6.1 Consensus size: 47
73290435 TTAGGATTTT
* ** * * * *
73290445 ATGTGATGAATGCGAATGTGTATATATGAGATAGGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
73290492 ATGTGATGAATGTGAACCTGTATATATATGCGGGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--CATATAT--GTGATAAGGCCGAATGGCCA
* * *
73290543 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
73290590 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
73290637 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
73290684 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
73290731 ATG
1 ATG
73290734 CGAAATGTGT
Statistics
Matches: 216, Mismatches: 22, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
47 169 0.78
49 11 0.05
51 36 0.17
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:73290583 original size:25 final size:25
Alignment explanation
Indices: 73290555--73290626 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 25
73290545 GTGATGAATG
73290555 TGAACATGCGTATGTGTGATAAGGC
1 TGAACATGCGTATGTGTGATAAGGC
* * *
73290580 TG-A-ATG-GCCA-ATGTGATGAATG-
1 TGAACATGCG-TATGTGTGAT-AAGGC
73290602 TGAACATGCGTATGTGTGATAAGGC
1 TGAACATGCGTATGTGTGATAAGGC
73290627 CGAATGGCCA
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
22 9 0.26
23 8 0.24
24 8 0.24
25 9 0.26
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (25 bp):
TGAACATGCGTATGTGTGATAAGGC
Found at i:73290843 original size:46 final size:46
Alignment explanation
Indices: 73290707--73290843 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
73290697 GAACATGTAT
* *
73290707 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
73290753 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
73290799 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
73290844 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:73292705 original size:40 final size:40
Alignment explanation
Indices: 73292282--73292692 Score: 750
Period size: 40 Copynumber: 10.3 Consensus size: 40
73292272 ATTGAGAGTT
*
73292282 ATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
73292322 ATATATCCGGGCTAAGTTCCGAAGAGCATTTGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
73292362 ATATATCCGGGCTAAGTTCCGAATAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
73292402 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
73292442 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* *
73292482 ATATATCCCGGCTAAGTTCCGAAAAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
73292522 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
73292562 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTT
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
73292602 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* *
73292642 ATATATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTT
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
73292682 ATATATCCGGG
1 ATATATCCGGG
73292693 TTAAACCTCG
Statistics
Matches: 358, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 358 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
Found at i:73292814 original size:57 final size:57
Alignment explanation
Indices: 73292724--73292834 Score: 143
Period size: 57 Copynumber: 1.9 Consensus size: 57
73292714 GCTAGAATTA
*
73292724 TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGTAGT
* ** * * *
73292781 TGAGGCACTAG-GTGTGCGAGTTCTTTAATCGAGCGCTATGTGTGCGAAATCAGT
1 TGAGGCACT-GTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGT
73292835 TAGTGGGCAT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
57 45 0.98
58 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.28
Consensus pattern (57 bp):
TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGTAGT
Found at i:73296423 original size:47 final size:47
Alignment explanation
Indices: 73296369--73296657 Score: 362
Period size: 47 Copynumber: 6.1 Consensus size: 47
73296359 TTAGGATTTT
* ** * * *
73296369 ATGTGATGAATGCGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
73296416 ATGTGATGAATGTGAACCTGTATATATATGCGGGATAAGGCCTAATGGCCA
1 ATGTGATGAATGTGAACATG--CATATAT--GTGATAAGGCCGAATGGCCA
* * *
73296467 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
73296514 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
73296561 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
73296608 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
73296655 ATG
1 ATG
73296658 CGAAATGTGT
Statistics
Matches: 215, Mismatches: 23, Indels: 8
0.87 0.09 0.03
Matches are distributed among these distances:
47 168 0.78
49 11 0.05
51 36 0.17
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:73296507 original size:25 final size:25
Alignment explanation
Indices: 73296479--73296550 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 25
73296469 GTGATGAATG
73296479 TGAACATGCGTATGTGTGATAAGGC
1 TGAACATGCGTATGTGTGATAAGGC
* * *
73296504 TG-A-ATG-GCCA-ATGTGATGAATG-
1 TGAACATGCG-TATGTGTGAT-AAGGC
73296526 TGAACATGCGTATGTGTGATAAGGC
1 TGAACATGCGTATGTGTGATAAGGC
73296551 CGAATGGCCA
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
22 9 0.26
23 8 0.24
24 8 0.24
25 9 0.26
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (25 bp):
TGAACATGCGTATGTGTGATAAGGC
Found at i:73296767 original size:46 final size:46
Alignment explanation
Indices: 73296631--73296767 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
73296621 GAACATGTAT
* *
73296631 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
73296677 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
73296723 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
73296768 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:73298033 original size:49 final size:49
Alignment explanation
Indices: 73297954--73298070 Score: 139
Period size: 49 Copynumber: 2.4 Consensus size: 49
73297944 TGTCGTGTGT
* * *
73297954 CAGTGTAATACCTGTTTGGGACATGACATCGACAC-CGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGACATCGAC-CTCGATAGATGAAAGC
* * *
73298003 CAGTGTAAGACCTGTCTGGGACAT-AGCATCGGCCTCGCTATATGAAAGC
1 CAGTGTAAGACCTGTCTGGGACATGA-CATCGACCTCGATAGATGAAAGC
73298052 CAGTGTAAGACCATGTCTG
1 CAGTGTAAGACC-TGTCTG
73298071 CTACATGGCA
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
48 2 0.03
49 51 0.86
50 6 0.10
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGACATCGACCTCGATAGATGAAAGC
Found at i:73299319 original size:20 final size:21
Alignment explanation
Indices: 73299280--73299319 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
73299270 GTTATAACGA
* *
73299280 CCACACGGGCGTGTTGCCCTT
1 CCACACGAGCATGTTGCCCTT
73299301 CCACACGAGCATG-TGCCCT
1 CCACACGAGCATGTTGCCCT
73299320 GTTTCTAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (21 bp):
CCACACGAGCATGTTGCCCTT
Found at i:73299684 original size:20 final size:21
Alignment explanation
Indices: 73299645--73299684 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
73299635 GTTATAACGA
* *
73299645 CCACACGGGCGTGTTGCCCTT
1 CCACACGAGCATGTTGCCCTT
73299666 CCACACGAGCATG-TGCCCT
1 CCACACGAGCATGTTGCCCT
73299685 GTTTCTAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (21 bp):
CCACACGAGCATGTTGCCCTT
Found at i:73299707 original size:365 final size:366
Alignment explanation
Indices: 73299032--73299763 Score: 1448
Period size: 365 Copynumber: 2.0 Consensus size: 366
73299022 GCCTTGGCCG
73299032 TGTGCCCCTTATTAGATGCTGACGTCAGAAACAGAATTTCAAGGTTTTCAGACACGGGCTAGGAC
1 TGTGCCCCTTATTAGATGCTGACGTCAGAAACAGAATTTCAAGGTTTTCAGACACGGGCTAGGAC
73299097 ACGGGCATGTCATGGCCGTGTGAAGGACACGGGCCATAGACACGGGCGTGTGTCAGGCGGTGTGA
66 ACGGGCATGTCATGGCCGTGTGAAGGACACGGGCCATAGACACGGGCGTGTGTCAGGCGGTGTGA
73299162 AAACCCTTATAGGTTCGAATTTGGAATTAAATTCACACGGGTATGGGACACGAGCGTGTCCCTAG
131 AAACCCTTATAGGTTCGAATTTGGAATTAAATTCACACGGGTATGGGACACGAGCGTGTCCCTAG
73299227 ATGGTTAGGCCGTGTATATCACACAGGCCATCAGCACGATCATGTTATAACGACCACACGGGCGT
196 ATGGTTAGGCCGTGTATATCACACAGGCCATCAGCACGATCATGTTATAACGACCACACGGGCGT
73299292 GTTGCCCTTCCACACGAGCATGTGCCCTGTTTCTAGAATCATTTTTATTTAGTCGGTTTAAGGAC
261 GTTGCCCTTCCACACGAGCATGTGCCCTGTTTCTAGAATCATTTTTATTTAGTCGGTTTAAGGAC
73299357 CCGAGTTGGTTCTGAAGGGTTTCCAAGGAAAGTTTGAAGCA
326 CCGAGTTGGTTCTGAAGGGTTTCCAAGGAAAGTTTGAAGCA
73299398 TGTG-CCCTTATTAGATGCTGACGTCAGAAACAGAATTTCAAGGTTTTCAGACACGGGCTAGGAC
1 TGTGCCCCTTATTAGATGCTGACGTCAGAAACAGAATTTCAAGGTTTTCAGACACGGGCTAGGAC
73299462 ACGGGCATGTCATGGCCGTGTGAAGGACACGGGCCATAGACACGGGCGTGTGTCAGGCGGTGTGA
66 ACGGGCATGTCATGGCCGTGTGAAGGACACGGGCCATAGACACGGGCGTGTGTCAGGCGGTGTGA
*
73299527 AAACCCTTATAGGTTCGAATTTGGAATTAAATTCACACGGGTATGGGACACGGGCGTGTCCCTAG
131 AAACCCTTATAGGTTCGAATTTGGAATTAAATTCACACGGGTATGGGACACGAGCGTGTCCCTAG
73299592 ATGGTTAGGCCGTGTATATCACACAGGCCATCAGCACGATCATGTTATAACGACCACACGGGCGT
196 ATGGTTAGGCCGTGTATATCACACAGGCCATCAGCACGATCATGTTATAACGACCACACGGGCGT
73299657 GTTGCCCTTCCACACGAGCATGTGCCCTGTTTCTAGAATCATTTTTATTTAGTCGGTTTAAGGAC
261 GTTGCCCTTCCACACGAGCATGTGCCCTGTTTCTAGAATCATTTTTATTTAGTCGGTTTAAGGAC
73299722 CCGAGTTGGTTCTGAAGGGTTTCCAAGGAAAGTTTGAAGCA
326 CCGAGTTGGTTCTGAAGGGTTTCCAAGGAAAGTTTGAAGCA
73299763 T
1 T
73299764 TATAGGCCCA
Statistics
Matches: 365, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
365 361 0.99
366 4 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (366 bp):
TGTGCCCCTTATTAGATGCTGACGTCAGAAACAGAATTTCAAGGTTTTCAGACACGGGCTAGGAC
ACGGGCATGTCATGGCCGTGTGAAGGACACGGGCCATAGACACGGGCGTGTGTCAGGCGGTGTGA
AAACCCTTATAGGTTCGAATTTGGAATTAAATTCACACGGGTATGGGACACGAGCGTGTCCCTAG
ATGGTTAGGCCGTGTATATCACACAGGCCATCAGCACGATCATGTTATAACGACCACACGGGCGT
GTTGCCCTTCCACACGAGCATGTGCCCTGTTTCTAGAATCATTTTTATTTAGTCGGTTTAAGGAC
CCGAGTTGGTTCTGAAGGGTTTCCAAGGAAAGTTTGAAGCA
Found at i:73308098 original size:11 final size:11
Alignment explanation
Indices: 73308082--73308107 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
73308072 TGGTTGTAAG
73308082 AGAAAAAAAAA
1 AGAAAAAAAAA
73308093 AGAAAAAAAAA
1 AGAAAAAAAAA
73308104 AGAA
1 AGAA
73308108 CTCTTCACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (11 bp):
AGAAAAAAAAA
Found at i:73315222 original size:20 final size:20
Alignment explanation
Indices: 73315175--73315222 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
73315165 GATTTTTCAT
73315175 ATAATTA-TTAAAAAAATAA
1 ATAATTATTTAAAAAAATAA
*
73315194 ATAATTTATTTAAAAATTATAA
1 ATAA-TTATTTAAAAA-AATAA
73315216 A-AATTAT
1 ATAATTAT
73315223 AAATAAAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 4 0.16
20 7 0.28
21 9 0.36
22 5 0.20
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
ATAATTATTTAAAAAAATAA
Found at i:73316152 original size:17 final size:18
Alignment explanation
Indices: 73316119--73316154 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
73316109 TTGGTATAAT
*
73316119 ATCAACTTAACTAAAAAA
1 ATCAAATTAACTAAAAAA
73316137 ATCAAATTAA-TAAAAAA
1 ATCAAATTAACTAAAAAA
73316154 A
1 A
73316155 ATATAAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.67, C:0.11, G:0.00, T:0.22
Consensus pattern (18 bp):
ATCAAATTAACTAAAAAA
Found at i:73316609 original size:22 final size:22
Alignment explanation
Indices: 73316584--73316628 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
73316574 CTATACTAAT
73316584 TGACAAAAAAAATGAAACTCAC
1 TGACAAAAAAAATGAAACTCAC
73316606 TGACAAAAAAAATGAAACTCAC
1 TGACAAAAAAAATGAAACTCAC
73316628 T
1 T
73316629 TTTCAGTGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.58, C:0.18, G:0.09, T:0.16
Consensus pattern (22 bp):
TGACAAAAAAAATGAAACTCAC
Found at i:73318039 original size:68 final size:68
Alignment explanation
Indices: 73317776--73318038 Score: 329
Period size: 68 Copynumber: 3.9 Consensus size: 68
73317766 CTCGAAATCA
* * * *
73317776 GGAGTCTACCAAGTCATTAAACATGGATTCATAATGTGTAAGATCATAGCTAGGATATGACAACA
1 GGAGTCTACCAAGACATTAAACATGGGTTCATAATGTGTAAGACCATAGCTAGGCTATGACAACA
73317841 TAT
66 TAT
* * *
73317844 GAAGTCCT-CCAAGACATTAAACATGAGTTTATAATGTGTAAGACCATAGCTAGGCTATGACAAC
1 GGAGT-CTACCAAGACATTAAACATGGGTTCATAATGTGTAAGACCATAGCTAGGCTATGACAAC
73317908 ATAT
65 ATAT
* * *
73317912 GGAGT-TCGCCAGGACATTAAACATGGGTTCATACTGTGTAAGACCATA-CTTAGGCTATGGA-A
1 GGAGTCT-ACCAAGACATTAAACATGGGTTCATAATGTGTAAGACCATAGC-TAGGCTAT-GACA
73317974 ACATAT
63 ACATAT
* * *
73317980 GGAGTCTACCAAAACATTAAACATGGGTTCATACAT-TGTAAGACCATAGTTGGGCTATG
1 GGAGTCTACCAAGACATTAAACATGGGTTCATA-ATGTGTAAGACCATAGCTAGGCTATG
73318039 GTGCTAGAAA
Statistics
Matches: 169, Mismatches: 18, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
66 1 0.01
67 2 0.01
68 160 0.95
69 6 0.04
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.27
Consensus pattern (68 bp):
GGAGTCTACCAAGACATTAAACATGGGTTCATAATGTGTAAGACCATAGCTAGGCTATGACAACA
TAT
Found at i:73323686 original size:40 final size:40
Alignment explanation
Indices: 73323624--73323841 Score: 332
Period size: 40 Copynumber: 5.5 Consensus size: 40
73323614 AAGCCAAGTA
* *
73323624 CCTTCGGGATTTA-ACCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
73323663 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73323703 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73323743 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * **
73323783 CCTCCGGGACTTAGCCCGGA-ACTAGTCACTAGCGTAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
73323823 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
73323842 TTATCATCCA
Statistics
Matches: 165, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 13 0.08
40 152 0.92
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:73329133 original size:24 final size:25
Alignment explanation
Indices: 73329071--73329157 Score: 67
Period size: 24 Copynumber: 3.5 Consensus size: 25
73329061 GGACTCACCG
73329071 CAGCTCGTATGAGCTTACTGATATGC
1 CAGCTCGTA-GAGCTTACTGATATGC
*
73329097 CAGCTCATAAGAGCTTACT-AT-T-C
1 CAGCTCGT-AGAGCTTACTGATATGC
* *
73329120 TCAGCTCGTCAGAGTTTACTG-T-TTC
1 -CAGCTCGT-AGAGCTTACTGATATGC
73329145 CAGCTCGATAGAG
1 CAGCTCG-TAGAG
73329158 TTTATTGTTC
Statistics
Matches: 52, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
23 1 0.02
24 30 0.58
25 4 0.08
26 16 0.31
27 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (25 bp):
CAGCTCGTAGAGCTTACTGATATGC
Found at i:73329158 original size:24 final size:25
Alignment explanation
Indices: 73329096--73329166 Score: 69
Period size: 24 Copynumber: 3.0 Consensus size: 25
73329086 TACTGATATG
* *
73329096 CCAGCTC-ATAAGAGCTTACT-ATT
1 CCAGCTCGATAAGAGTTTACTGTTT
*
73329119 CTCAGCTCG-TCAGAGTTTACTGTTT
1 C-CAGCTCGATAAGAGTTTACTGTTT
*
73329144 CCAGCTCGAT-AGAGTTTATTGTT
1 CCAGCTCGATAAGAGTTTACTGTT
73329167 CATCAGCTCA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
23 1 0.03
24 35 0.88
25 4 0.10
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.37
Consensus pattern (25 bp):
CCAGCTCGATAAGAGTTTACTGTTT
Found at i:73331814 original size:40 final size:40
Alignment explanation
Indices: 73331759--73331960 Score: 302
Period size: 40 Copynumber: 5.0 Consensus size: 40
73331749 GATGATAACG
*
73331759 GGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
*
73331799 GGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
73331839 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
**
73331879 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
73331919 GGGCTAAGTCCCGAAGGCATTTGAGTGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
73331959 GG
1 GG
73331961 TTAAATCTCG
Statistics
Matches: 152, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:73339856 original size:40 final size:40
Alignment explanation
Indices: 73339799--73339960 Score: 229
Period size: 40 Copynumber: 4.0 Consensus size: 40
73339789 GATGATAACG
*
73339799 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
**
73339839 AAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* **
73339879 GGGCTAAGTCCCGAAGGCATTTTTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
73339919 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
73339959 GG
1 GG
73339961 TTAAATCCTG
Statistics
Matches: 109, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 2 0.02
40 106 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:73344476 original size:555 final size:555
Alignment explanation
Indices: 73343406--73344500 Score: 1534
Period size: 555 Copynumber: 2.0 Consensus size: 555
73343396 AATAGAAGTG
* *
73343406 ATTGGCTAAGAGCATGTACATAGGTTGTTTGTGTTTACAAATAAATTTGGCATGATGATATGTGA
1 ATTGGCTAAGAGCATGTACATAGATTGTTTGTGTTTACAAATAAATTTGGCATGATGATAGGTGA
* * *
73343471 TTTTAAATCTTTGATTACTAGACTACTAAGTTCTATACATTACACTGTAAATAGGCATTAAGCAA
66 TTTTAAATCTTTGATTACTAAACTACTAAGTTCTATACATTACACTATAAATAGGCATTAAACAA
** * * *
73343536 TCAACTGTACTGAATGATATAGAAAATACAAGGAAACGAGCATGCTAGTATGAATGATAAATGGT
131 TCAACTGTACCAAATGATATAGAAAATACAAGGAAACGAGAATGCTAGAATGAAGGATAAATGGT
* * * * *
73343601 TGAATTTGAGTTTGTTTGGTTGCTTAAATTTGTGCATATTGAGATATCTAGGGATGAATTAATGC
196 TGAATTTGAGTTTGTTTGGTTGATCAAATTTGTGCATATTGAGATATCTAGAGATGAACTAAGGC
* * * *
73343666 ATTATTTGAAACACATCCAGAGCCAAAAACCTGACTTGTATTTATTCACCCTTAGTACCTATTTT
261 ATTATTTGAAACACATCCAGAGCCAAAAACCTGACCTATACTTATCCACCCTTAGTACCTATTTT
* *
73343731 GAGCCTGTAAACACTTCTTGATGAACCTTATTACAAAACCCAAGCCAGAAACGTTAATTTGTATT
326 GAGCCTATAAACACTTCTTAATGAACCTTATTACAAAACCCAAGCCAGAAACGTTAATTTGTATT
* * ** * * *
73343796 TGCACTCTTTCTTTGGTTCTGAATTGCACGATTATTTACGCTTGACCATATGTATTGAAGGTTAA
391 TGCACTCTTTCTTTGGTTCTGAATTACACGACTATAGACGCTTAACCATACGTATGGAAGGTTAA
* ** *
73343861 GTAGATACATCACGATAGATTTTGTAAAAGTAGAGTGAAATTGGAAAAATCAAGGTGATATAGGA
456 GTAGATACATCACGACAGATTTTGTAAAACCAGAGTGAAATAGGAAAAATCAAGGTGATATAGGA
73343926 ATCATAGGTTAGCCTAAAGTTTAAATCAAAGAAAA
521 ATCATAGGTTAGCCTAAAGTTTAAATCAAAGAAAA
* * * * *
73343961 ATTGGTTAGGAGCATGTGCGTAGATTGTTTGTGTTTACAAATAAATTTGGTATGATGATAGGTGA
1 ATTGGCTAAGAGCATGTACATAGATTGTTTGTGTTTACAAATAAATTTGGCATGATGATAGGTGA
* * *
73344026 TTTTAAATTTTTGATTATTAAACTACTAAGTTCT-TCACATTACATTATAAATAGGCATTAAACA
66 TTTTAAATCTTTGATTACTAAACTACTAAGTTCTAT-ACATTACACTATAAATAGGCATTAAACA
**
73344090 ATCAACTGTACCAAATGATATAGAAAATACAAGGAAGTGAGAATGCTAGAATGAAGGATAAATGG
130 ATCAACTGTACCAAATGATATAGAAAATACAAGGAAACGAGAATGCTAGAATGAAGGATAAATGG
* **
73344155 TTGAATTTGAGTTTGTTTGGTTGATCAAATTTGTGCATATTGAGATATTTAGAGATGGCCTAAGG
195 TTGAATTTGAGTTTGTTTGGTTGATCAAATTTGTGCATATTGAGATATCTAGAGATGAACTAAGG
* * *
73344220 CATTGTTTGGAAA-ATATCCAGAGCCAAAAAGCTGACCTATACTTATCCACCCTTAGTACCTATT
260 CATTATTT-GAAACACATCCAGAGCCAAAAACCTGACCTATACTTATCCACCCTTAGTACCTATT
* *** * *
73344284 TTGAGCCTATAAACACTTCTTAATGAACCTTATTTCAAAACTTGAGCTAGAAATGTTAATTTGTA
324 TTGAGCCTATAAACACTTCTTAATGAACCTTATTACAAAACCCAAGCCAGAAACGTTAATTTGTA
* * * * * *
73344349 TTTTCCCTCTTTCTTTGG-TCTTGAATTACATGGCTATAGATG-TCTAACCATACGTATGGAGGG
389 TTTGCACTCTTTCTTTGGTTC-TGAATTACACGACTATAGACGCT-TAACCATACGTATGGAAGG
* * *
73344412 TTAAGTAGATACATCACGGCGGATTTTGTAAAACCAGAGTGAAATAGGAAAGATC-AGTGTGATA
452 TTAAGTAGATACATCACGACAGATTTTGTAAAACCAGAGTGAAATAGGAAAAATCAAG-GTGATA
*
73344476 TAGGAATTATAGGTTAGCCTAAAGT
516 TAGGAATCATAGGTTAGCCTAAAGT
73344501 GCAAAAAAAA
Statistics
Matches: 471, Mismatches: 64, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
554 6 0.01
555 461 0.98
556 4 0.01
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (555 bp):
ATTGGCTAAGAGCATGTACATAGATTGTTTGTGTTTACAAATAAATTTGGCATGATGATAGGTGA
TTTTAAATCTTTGATTACTAAACTACTAAGTTCTATACATTACACTATAAATAGGCATTAAACAA
TCAACTGTACCAAATGATATAGAAAATACAAGGAAACGAGAATGCTAGAATGAAGGATAAATGGT
TGAATTTGAGTTTGTTTGGTTGATCAAATTTGTGCATATTGAGATATCTAGAGATGAACTAAGGC
ATTATTTGAAACACATCCAGAGCCAAAAACCTGACCTATACTTATCCACCCTTAGTACCTATTTT
GAGCCTATAAACACTTCTTAATGAACCTTATTACAAAACCCAAGCCAGAAACGTTAATTTGTATT
TGCACTCTTTCTTTGGTTCTGAATTACACGACTATAGACGCTTAACCATACGTATGGAAGGTTAA
GTAGATACATCACGACAGATTTTGTAAAACCAGAGTGAAATAGGAAAAATCAAGGTGATATAGGA
ATCATAGGTTAGCCTAAAGTTTAAATCAAAGAAAA
Found at i:73352414 original size:68 final size:68
Alignment explanation
Indices: 73352303--73352524 Score: 215
Period size: 68 Copynumber: 3.3 Consensus size: 68
73352293 AAACTTGGGT
* *
73352303 TCAT-ATGTGTAAGACCATAGCTAGAG--AGGGCAACATATGGAGTCC-TCTAAGAGATTAAACA
1 TCATAATGTGTAAGACCATAGCTAG-GCTATGGCAACATATGGAGTCCTTC-AAGACATTAAACA
73352364 TAAGA
64 TAAGA
* * * ** *
73352369 TGATAATGTATAAGACCATAGCTAGGCTATGGCAATATATGGAGTCCTTCAAGACATTAAATGTG
1 TCATAATGTGTAAGACCATAGCTAGGCTATGGCAACATATGGAGTCCTTCAAGACATTAAACATA
*
73352434 GGA
66 AGA
* * * *
73352437 TCATATTGTGTAAGATCATACCTAGGCTATGGCAACATATTGAGT--TTGCCAAGACATTAAACA
1 TCATAATGTGTAAGACCATAGCTAGGCTATGGCAACATATGGAGTCCTT--CAAGACATTAAACA
* *
73352500 TGAGT
64 TAAGA
73352505 TCATACAT-TGTAAGACCATA
1 TCATA-ATGTGTAAGACCATA
73352525 TTTGCACTAT
Statistics
Matches: 127, Mismatches: 22, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
66 6 0.05
67 19 0.15
68 99 0.78
69 3 0.02
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.27
Consensus pattern (68 bp):
TCATAATGTGTAAGACCATAGCTAGGCTATGGCAACATATGGAGTCCTTCAAGACATTAAACATA
AGA
Found at i:73360099 original size:46 final size:46
Alignment explanation
Indices: 73360031--73360132 Score: 111
Period size: 46 Copynumber: 2.2 Consensus size: 46
73360021 CCTAGATGTG
**
73360031 GTCTTACACTGACTATCATCTCGTA-GTTGATGCATGTCGC-AGAAAT
1 GTCTTACACTGACTATCATCTCG-AGGCCGATGCATGTC-CTAGAAAT
* * *
73360077 GTCTTACACTGGCT-TACGTCTCGAGGCCGATGCATGTCCTAGACAT
1 GTCTTACACTGACTAT-CATCTCGAGGCCGATGCATGTCCTAGAAAT
73360123 GTCTTACACT
1 GTCTTACACT
73360133 AGCACTCATC
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
45 3 0.06
46 45 0.94
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (46 bp):
GTCTTACACTGACTATCATCTCGAGGCCGATGCATGTCCTAGAAAT
Found at i:73360145 original size:46 final size:44
Alignment explanation
Indices: 73360059--73360226 Score: 121
Period size: 46 Copynumber: 3.7 Consensus size: 44
73360049 TCTCGTAGTT
* * * *
73360059 GATGCATGTCGCAGAAATGTCTTACACTGGCTTACGTCTCGAGGCC
1 GATGCATGTC-CAGACATGTCTTACACTAGCCT-CATCTCGAGGCC
* *
73360105 GATGCATGTCCTAGACATGTCTTACACTAGCACTCATCTCGATGTC
1 GATGCATGTCC-AGACATGTCTTACACTAGC-CTCATCTCGAGGCC
* * *
73360151 GATGCCATGT-C--ACATGGTCTTACAC-AGGCTCTCATAAT-GTGACC
1 GATG-CATGTCCAGACAT-GTCTTACACTA-GC-CTCAT-CTCGAGGCC
*
73360195 GATGCATGTCCCAGACACGTCTTACACTAGCC
1 GATGCATGT-CCAGACATGTCTTACACTAGCC
73360227 CACAATAACC
Statistics
Matches: 98, Mismatches: 13, Indels: 23
0.73 0.10 0.17
Matches are distributed among these distances:
43 10 0.10
44 22 0.22
45 4 0.04
46 52 0.53
47 10 0.10
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27
Consensus pattern (44 bp):
GATGCATGTCCAGACATGTCTTACACTAGCCTCATCTCGAGGCC
Found at i:73361859 original size:45 final size:45
Alignment explanation
Indices: 73361809--73361894 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
73361799 CCAAAACATG
* *
73361809 TGTCACATATATCACGAACTTAGACCACAACTAAATGAGTTCGGA
1 TGTCACATATATCACGAACTCAGACCACAAATAAATGAGTTCGGA
* *
73361854 TGTCACATATATCATGAACTCAGACCACAAATCAATGAGTT
1 TGTCACATATATCACGAACTCAGACCACAAATAAATGAGTT
73361895 TAGATCACAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (45 bp):
TGTCACATATATCACGAACTCAGACCACAAATAAATGAGTTCGGA
Found at i:73367264 original size:13 final size:13
Alignment explanation
Indices: 73367246--73367271 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73367236 TGACTAATTA
73367246 TTAAGCTAAATGT
1 TTAAGCTAAATGT
73367259 TTAAGCTAAATGT
1 TTAAGCTAAATGT
73367272 GATATTATGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
TTAAGCTAAATGT
Found at i:73367606 original size:26 final size:26
Alignment explanation
Indices: 73367577--73367661 Score: 68
Period size: 26 Copynumber: 3.3 Consensus size: 26
73367567 GTGAGAACAC
73367577 ATGTGTAGTACTATGTGCAGGCTACT
1 ATGTGTAGTACTATGTGCAGGCTACT
* ** **
73367603 ATGTGT-TTAAGATGGTTTTAGG-T-CAT
1 ATGTGTAGTACTAT-G-TGCAGGCTAC-T
*
73367629 ATGTGTAGTACTAAGTGCAGGCTACT
1 ATGTGTAGTACTATGTGCAGGCTACT
73367655 ATGTGTA
1 ATGTGTA
73367662 CCAGATAGTT
Statistics
Matches: 42, Mismatches: 11, Indels: 12
0.65 0.17 0.18
Matches are distributed among these distances:
25 9 0.21
26 25 0.60
27 8 0.19
ACGTcount: A:0.25, C:0.11, G:0.27, T:0.38
Consensus pattern (26 bp):
ATGTGTAGTACTATGTGCAGGCTACT
Found at i:73367693 original size:50 final size:50
Alignment explanation
Indices: 73367574--73367862 Score: 294
Period size: 50 Copynumber: 5.7 Consensus size: 50
73367564 ATTGTGAGAA
* *** *
73367574 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG--TTAGGT
*
73367626 CATATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
* * * * *
73367676 CGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
* * *
73367726 CACATGTGTAGTACTAAGTCCAAGCTACTACGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
* * * * * * * *
73367776 CGCATGTGTAGTACTAATTTCAAGCTACTATGCGTACCCA-ACAACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGA-TAGTT-AGGT
* * *
73367827 CACGTGTGTAGTACTAACTGCAGGCTACTACGTGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA
73367863 TTAGATGGTT
Statistics
Matches: 201, Mismatches: 33, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
50 126 0.63
51 36 0.18
52 39 0.19
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
Found at i:73367761 original size:100 final size:101
Alignment explanation
Indices: 73367576--73367792 Score: 339
Period size: 100 Copynumber: 2.1 Consensus size: 101
73367566 TGTGAGAACA
* * * *
73367576 CATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTCATATGTGTAGTACT
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTTCAAGATGG-TTTAGGTCACATGTGTAGTACT
* * *
73367641 AAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCG
65 AAGTCCAAGCTACTACGTGTACCAGATAGTTAGGTCG
73367678 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAA-ATGG-TTAGGTCACATGTGTAGTACT
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGT-TCAAGATGGTTTAGGTCACATGTGTAGTACT
73367741 AAGTCCAAGCTACTACGTGTACCAGATAGTTAGGTCG
65 AAGTCCAAGCTACTACGTGTACCAGATAGTTAGGTCG
73367778 CATGTGTAGTACTAA
1 CATGTGTAGTACTAA
73367793 TTTCAAGCTA
Statistics
Matches: 107, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
100 69 0.64
102 35 0.33
103 3 0.03
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (101 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTTCAAGATGGTTTAGGTCACATGTGTAGTACTA
AGTCCAAGCTACTACGTGTACCAGATAGTTAGGTCG
Found at i:73367985 original size:49 final size:50
Alignment explanation
Indices: 73367876--73367987 Score: 145
Period size: 49 Copynumber: 2.3 Consensus size: 50
73367866 GATGGTTATG
* * *
73367876 GTGCAGGCTACTACGTGTATTAGATGGTTTGGACACGTTTGTAGTACTAA
1 GTGCAGGCTACTACGTGTATCAGATGGTTTGGACACATGTGTAGTACTAA
* * * * *
73367926 GTGCATGCTACTACGTGTATCGGATTG-TTGGTCGCATGTGTAGTACTAA
1 GTGCAGGCTACTACGTGTATCAGATGGTTTGGACACATGTGTAGTACTAA
73367975 GTGCAGGCTACTA
1 GTGCAGGCTACTA
73367988 TACGTACTAG
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
49 30 0.57
50 23 0.43
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.33
Consensus pattern (50 bp):
GTGCAGGCTACTACGTGTATCAGATGGTTTGGACACATGTGTAGTACTAA
Found at i:73368219 original size:16 final size:15
Alignment explanation
Indices: 73368198--73368227 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
73368188 GAATGGAGTA
73368198 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
73368214 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
73368228 TAAAATAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:73372496 original size:12 final size:12
Alignment explanation
Indices: 73372481--73372505 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73372471 ATAAGAACAT
73372481 TTATAGAAAATA
1 TTATAGAAAATA
73372493 TTATAGAAAATA
1 TTATAGAAAATA
73372505 T
1 T
73372506 AAAACAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (12 bp):
TTATAGAAAATA
Found at i:73373863 original size:20 final size:21
Alignment explanation
Indices: 73373834--73373882 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
73373824 ATTTTGGGCC
73373834 GTTTATTATTTATTA-TTTTGG
1 GTTTA-TATTTATTATTTTTGG
*
73373855 TTTTATATTTATTATTTTTGG
1 GTTTATATTTATTATTTTTGG
73373876 GTTTATA
1 GTTTATA
73373883 ATGGGCCGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.67
Consensus pattern (21 bp):
GTTTATATTTATTATTTTTGG
Found at i:73381232 original size:17 final size:18
Alignment explanation
Indices: 73381201--73381234 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
73381191 CATAATGCAG
73381201 GCCCATGTGGGCCCACAT
1 GCCCATGTGGGCCCACAT
73381219 GCCCATGT-GGCCCACA
1 GCCCATGTGGGCCCACA
73381235 CGGCACATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.18, C:0.41, G:0.26, T:0.15
Consensus pattern (18 bp):
GCCCATGTGGGCCCACAT
Found at i:73396164 original size:28 final size:28
Alignment explanation
Indices: 73396132--73396187 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
73396122 CATTTTTAGG
73396132 AAAAGTGATTAATTTTGGAAAATACTTT
1 AAAAGTGATTAATTTTGGAAAATACTTT
73396160 AAAAGTGATTAATTTTGGAAAATACTTT
1 AAAAGTGATTAATTTTGGAAAATACTTT
73396188 CATCGCGGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.04, G:0.14, T:0.39
Consensus pattern (28 bp):
AAAAGTGATTAATTTTGGAAAATACTTT
Found at i:73398544 original size:26 final size:26
Alignment explanation
Indices: 73398508--73398591 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
73398498 CATGAAATTC
73398508 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
73398534 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
73398560 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
73398586 TTATCA
1 TTATCA
73398592 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:73401783 original size:29 final size:29
Alignment explanation
Indices: 73401697--73401796 Score: 112
Period size: 29 Copynumber: 3.5 Consensus size: 29
73401687 TACCTGTATC
* *
73401697 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* * * *
73401725 TGGCCTATTAGGCCCAAACCACCTGCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
73401754 TCGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
73401783 TGGCCCGTTAGGCC
1 TGGCCCATTAGGCC
73401797 TAGTCACATT
Statistics
Matches: 57, Mismatches: 14, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
28 13 0.23
29 44 0.77
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:73403479 original size:24 final size:24
Alignment explanation
Indices: 73403442--73403571 Score: 233
Period size: 24 Copynumber: 5.4 Consensus size: 24
73403432 CTAGAGGCCT
*
73403442 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
73403467 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
73403491 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
73403515 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
73403539 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
73403563 AGCCCTTTT
1 AGCCCTTTT
73403572 GCACTTCCTC
Statistics
Matches: 102, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
24 98 0.96
25 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:73403646 original size:20 final size:20
Alignment explanation
Indices: 73403621--73403687 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
73403611 TTATGAATAC
*
73403621 ATCATGTGCATATCAAACAT
1 ATCATGTGCATATCATACAT
73403641 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
73403661 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
73403681 ACCATGT
1 ATCATGT
73403688 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:73403745 original size:26 final size:25
Alignment explanation
Indices: 73403716--73403770 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
73403706 TTAAATTCAT
*
73403716 ATTTAAACCCTAGGGGCAAAATGGTC
1 ATTTAAA-CCTAGGGGCAAAACGGTC
**
73403742 ATTTTTACCTAGGGGCAAAACGGTC
1 ATTTAAACCTAGGGGCAAAACGGTC
73403767 ATTT
1 ATTT
73403771 TCATATTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (25 bp):
ATTTAAACCTAGGGGCAAAACGGTC
Found at i:73403756 original size:25 final size:25
Alignment explanation
Indices: 73403724--73403771 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
73403714 ATATTTAAAC
*
73403724 CCTAGGGGCAAAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
73403749 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
73403772 CATATTATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:73405932 original size:12 final size:12
Alignment explanation
Indices: 73405915--73405939 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73405905 TTTTTTCCTA
73405915 TATAATAATAAT
1 TATAATAATAAT
73405927 TATAATAATAAT
1 TATAATAATAAT
73405939 T
1 T
73405940 TTCATAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TATAATAATAAT
Found at i:73406007 original size:19 final size:18
Alignment explanation
Indices: 73405970--73406013 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
73405960 ATACTTACAG
73405970 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
73405987 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
73406006 TACTAATT
1 TAATAATT
73406014 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:73406994 original size:7 final size:7
Alignment explanation
Indices: 73406982--73407028 Score: 94
Period size: 7 Copynumber: 6.7 Consensus size: 7
73406972 TTTTATGAGA
73406982 CCCAAAG
1 CCCAAAG
73406989 CCCAAAG
1 CCCAAAG
73406996 CCCAAAG
1 CCCAAAG
73407003 CCCAAAG
1 CCCAAAG
73407010 CCCAAAG
1 CCCAAAG
73407017 CCCAAAG
1 CCCAAAG
73407024 CCCAA
1 CCCAA
73407029 TTCATCAAGG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 40 1.00
ACGTcount: A:0.43, C:0.45, G:0.13, T:0.00
Consensus pattern (7 bp):
CCCAAAG
Found at i:73411169 original size:17 final size:16
Alignment explanation
Indices: 73411147--73411180 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
73411137 TAGGATGGCA
73411147 TTTGTTTGATGTTTATT
1 TTTGTTTG-TGTTTATT
*
73411164 TTTGTTTGTTTTTATT
1 TTTGTTTGTGTTTATT
73411180 T
1 T
73411181 CATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.09, C:0.00, G:0.15, T:0.76
Consensus pattern (16 bp):
TTTGTTTGTGTTTATT
Found at i:73418032 original size:43 final size:44
Alignment explanation
Indices: 73417984--73418176 Score: 187
Period size: 43 Copynumber: 4.5 Consensus size: 44
73417974 GTTACCGAGA
* *
73417984 TGTGATTACATGTAAGACCATGTTTGAGACATTGGCATTG-TGT
1 TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCGTTGT
* * * *
73418027 TGTGATTACGTGTAAGACCATGTCTGGGATATTGACATCGTTGT
1 TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCGTTGT
* **
73418071 T-TGATTACATGTAAGACCATGTTTGGGACATTGGAATCGTTAC
1 TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCGTTGT
* * * * * * * * *
73418114 T-CGATTTCGTGTAAGACCCTGTCTAGGACAGTGGCATCGAT-A
1 TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCGTTGT
*
73418156 TGTGATAACATGTAAGACCAT
1 TGTGATTACATGTAAGACCAT
73418177 ATCTGGGATA
Statistics
Matches: 120, Mismatches: 28, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
42 1 0.01
43 115 0.96
44 4 0.03
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (44 bp):
TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCGTTGT
Found at i:73418184 original size:86 final size:86
Alignment explanation
Indices: 73417983--73418176 Score: 237
Period size: 86 Copynumber: 2.3 Consensus size: 86
73417973 GGTTACCGAG
* * * **
73417983 ATGTGATTACATGTAAGACCATGTTTGAGACATTGGCATTGTGTTGTGATTACGTGTAAGACCAT
1 ATGTGATTACATGTAAGACCATGTTTGGGACATTGGAATCGTGTACTGATTACGTGTAAGACCAT
* * * *
73418048 GTCTGGGATATTGACATCGTT
66 GTCTAGGACAGTGACATCGAT
* * * *
73418069 GTTTGATTACATGTAAGACCATGTTTGGGACATTGGAATCGT-TACTCGATTTCGTGTAAGACCC
1 ATGTGATTACATGTAAGACCATGTTTGGGACATTGGAATCGTGTACT-GATTACGTGTAAGACCA
*
73418133 TGTCTAGGACAGTGGCATCGAT
65 TGTCTAGGACAGTGACATCGAT
*
73418155 ATGTGATAACATGTAAGACCAT
1 ATGTGATTACATGTAAGACCAT
73418177 ATCTGGGATA
Statistics
Matches: 90, Mismatches: 17, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
85 2 0.02
86 88 0.98
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.34
Consensus pattern (86 bp):
ATGTGATTACATGTAAGACCATGTTTGGGACATTGGAATCGTGTACTGATTACGTGTAAGACCAT
GTCTAGGACAGTGACATCGAT
Found at i:73431742 original size:17 final size:18
Alignment explanation
Indices: 73431720--73431753 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
73431710 TTCTGGGCTA
73431720 TGTGGG-CCACACGGGCG
1 TGTGGGTCCACACGGGCG
*
73431737 TGTGGGTCCACATGGGC
1 TGTGGGTCCACACGGGC
73431754 CGCAATATGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.12, C:0.26, G:0.44, T:0.18
Consensus pattern (18 bp):
TGTGGGTCCACACGGGCG
Found at i:73433465 original size:20 final size:19
Alignment explanation
Indices: 73433437--73433475 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
73433427 GGGACTAAAC
*
73433437 TGAAAACTTTAGAAACTTTT
1 TGAAAACTTAAGAAA-TTTT
*
73433457 TGAACACTTAAGAAATTTT
1 TGAAAACTTAAGAAATTTT
73433476 CTCAAAAACT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.38
Consensus pattern (19 bp):
TGAAAACTTAAGAAATTTT
Found at i:73437825 original size:39 final size:39
Alignment explanation
Indices: 73437782--73437859 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
73437772 TTTAAGTTAA
73437782 AAGTTTTTGGTAATGCTCCGTAACCCTATTCTGATGACG
1 AAGTTTTTGGTAATGCTCCGTAACCCTATTCTGATGACG
73437821 AAGTTTTTGGTAATGCTCCGTAACCCTATTCTGATGACG
1 AAGTTTTTGGTAATGCTCCGTAACCCTATTCTGATGACG
73437860 GATACGGGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.36
Consensus pattern (39 bp):
AAGTTTTTGGTAATGCTCCGTAACCCTATTCTGATGACG
Found at i:73440534 original size:20 final size:20
Alignment explanation
Indices: 73440472--73440536 Score: 62
Period size: 19 Copynumber: 3.2 Consensus size: 20
73440462 TGTCCAATTT
73440472 AGGGGTACCGAAGTACAAAC
1 AGGGGTACCGAAGTACAAAC
* * * *
73440492 A-GGGCA-CGTATGTGCAATTC
1 AGGGGTACCG-AAGTACAA-AC
73440512 AGGGGTACCGAAGTACAAAC
1 AGGGGTACCGAAGTACAAAC
73440532 AGGGG
1 AGGGG
73440537 CATGTATCTG
Statistics
Matches: 33, Mismatches: 8, Indels: 8
0.67 0.16 0.16
Matches are distributed among these distances:
18 2 0.06
19 10 0.30
20 9 0.27
21 10 0.30
22 2 0.06
ACGTcount: A:0.34, C:0.18, G:0.34, T:0.14
Consensus pattern (20 bp):
AGGGGTACCGAAGTACAAAC
Found at i:73440550 original size:41 final size:41
Alignment explanation
Indices: 73440435--73440553 Score: 177
Period size: 40 Copynumber: 2.9 Consensus size: 41
73440425 ACATCTAGGA
* * * *
73440435 GTACTGAAGTACAGACAGGGGCACGTATGTCCAATTTAGGG
1 GTACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAGGG
73440476 GTACCGAAGTACAAACA-GGGCACGTATGTGCAATTCAGGG
1 GTACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAGGG
* *
73440516 GTACCGAAGTACAAACAGGGGCATGTATCTGCAATTCA
1 GTACCGAAGTACAAACAGGGGCACGTATGTGCAATTCA
73440554 TCATTATTCT
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
40 38 0.54
41 33 0.46
ACGTcount: A:0.32, C:0.19, G:0.29, T:0.20
Consensus pattern (41 bp):
GTACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAGGG
Found at i:73445322 original size:38 final size:38
Alignment explanation
Indices: 73445271--73445343 Score: 119
Period size: 38 Copynumber: 1.9 Consensus size: 38
73445261 TTTTTATTGT
*
73445271 ATTCATCACACATAGGAATAGTTCACTCAACATTTTGC
1 ATTCATCACACATAGGAATAATTCACTCAACATTTTGC
* *
73445309 ATTCATCACACATAGGAATAATTCTCTGAACATTT
1 ATTCATCACACATAGGAATAATTCACTCAACATTT
73445344 CTTACACTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.36, C:0.22, G:0.10, T:0.33
Consensus pattern (38 bp):
ATTCATCACACATAGGAATAATTCACTCAACATTTTGC
Found at i:73448634 original size:40 final size:40
Alignment explanation
Indices: 73448586--73448791 Score: 292
Period size: 40 Copynumber: 5.2 Consensus size: 40
73448576 AGACTAAGAT
*
73448586 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* *
73448626 CCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGAT-
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAG-TC
*
73448666 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
73448706 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* * * *
73448746 CCGTAGGCATTTGTGCGAGTTG-CTATAT-CTGGCTAAATT
1 CCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTC
73448785 CCGAAGG
1 CCGAAGG
73448792 TACTTGGGTT
Statistics
Matches: 149, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 15 0.10
40 132 0.89
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
Found at i:73448710 original size:80 final size:80
Alignment explanation
Indices: 73448577--73448791 Score: 337
Period size: 80 Copynumber: 2.7 Consensus size: 80
73448567 ATGATAACCA
73448577 GACTAAGATCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GACTAAGATCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
73448642 GAGTTACTATATCCG
66 GAGTTACTATATCCG
73448657 GACTAAGATCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GACTAAGATCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
73448722 GAGTTACTATATCCG
66 GAGTTACTATATCCG
* * * * * *
73448737 GGCTAAG-TCCCGTAGGCATTTGTGCGAGTTG-CTATAT-CTGGCTAAATTCCGAAGG
1 GACTAAGAT-CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAGG
73448792 TACTTGGGTT
Statistics
Matches: 127, Mismatches: 6, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
79 16 0.13
80 109 0.86
81 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (80 bp):
GACTAAGATCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
GAGTTACTATATCCG
Found at i:73460064 original size:18 final size:18
Alignment explanation
Indices: 73460041--73460076 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
73460031 TCTTTGTACT
*
73460041 AATATATGATATATCGAC
1 AATATACGATATATCGAC
73460059 AATATACGATATATCGAC
1 AATATACGATATATCGAC
73460077 CTTTTTAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.44, C:0.14, G:0.11, T:0.31
Consensus pattern (18 bp):
AATATACGATATATCGAC
Found at i:73461427 original size:23 final size:23
Alignment explanation
Indices: 73461401--73461624 Score: 296
Period size: 23 Copynumber: 9.7 Consensus size: 23
73461391 CAAAGTGCCA
* *
73461401 CACTGTAATATAGCCGAAGCTAT
1 CACTGTAATGTAGCCGAAGCTAC
* *
73461424 CACTGTAACGTAGCTGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
*
73461447 CACTGTATTGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
73461470 CACTG-AGATGTAGCCGAAGCTAC
1 CACTGTA-ATGTAGCCGAAGCTAC
*
73461493 CACTGTATTGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
*
73461516 CACTG-AGATGTAGCCGAAGCGAC
1 CACTGTA-ATGTAGCCGAAGCTAC
*
73461539 CACTGTATTGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
73461562 CACTG-AGATGTAGCCGAAGCTAC
1 CACTGTA-ATGTAGCCGAAGCTAC
73461585 CACTG-AGATGTAGCCGAAGCTAC
1 CACTGTA-ATGTAGCCGAAGCTAC
73461608 CACTG-AGATGTAGCCGA
1 CACTGTA-ATGTAGCCGA
73461625 TAGATTCCTA
Statistics
Matches: 182, Mismatches: 14, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
22 3 0.02
23 177 0.97
24 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.24, T:0.21
Consensus pattern (23 bp):
CACTGTAATGTAGCCGAAGCTAC
Found at i:73461468 original size:46 final size:46
Alignment explanation
Indices: 73461401--73461624 Score: 353
Period size: 46 Copynumber: 4.9 Consensus size: 46
73461391 CAAAGTGCCA
* * * * *
73461401 CACTGTAATATAGCCGAAGCTATCACTGTA-ACGTAGCTGAAGCTAC
1 CACTGTATTGTAGCCGAAGCTACCACTG-AGATGTAGCCGAAGCTAC
73461447 CACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCGAAGCTAC
1 CACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCGAAGCTAC
*
73461493 CACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCGAAGCGAC
1 CACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCGAAGCTAC
73461539 CACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCGAAGCTAC
1 CACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCGAAGCTAC
*
73461585 CACTG-AGATGTAGCCGAAGCTACCACTGAGATGTAGCCGA
1 CACTGTA-TTGTAGCCGAAGCTACCACTGAGATGTAGCCGA
73461625 TAGATTCCTA
Statistics
Matches: 168, Mismatches: 8, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
45 2 0.01
46 166 0.99
ACGTcount: A:0.29, C:0.25, G:0.24, T:0.21
Consensus pattern (46 bp):
CACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCGAAGCTAC
Found at i:73465075 original size:24 final size:24
Alignment explanation
Indices: 73465043--73465095 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
73465033 AATCATACAC
73465043 ACATAGTTTAATACCATTTCCAAA
1 ACATAGTTTAATACCATTTCCAAA
73465067 ACATAGTTTAATACCATTTCCAAA
1 ACATAGTTTAATACCATTTCCAAA
73465091 ACATA
1 ACATA
73465096 CCATACCTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.43, C:0.21, G:0.04, T:0.32
Consensus pattern (24 bp):
ACATAGTTTAATACCATTTCCAAA
Found at i:73468662 original size:49 final size:49
Alignment explanation
Indices: 73468577--73468702 Score: 155
Period size: 49 Copynumber: 2.6 Consensus size: 49
73468567 AAGTGCCAAC
* *
73468577 ACCATGTCCCAGACATGGTCTTACATTGGCTTTCATATAGCAAG-GTCGAT
1 ACCATGTCCCAGACA-GGTCTTACACTGGCTCTCATATAGC-AGTGTCGAT
* * ** *
73468627 GCCATGTCCCAGACAAGTCTTACACTGGCTCTCATATTTCGGTGTCGAT
1 ACCATGTCCCAGACAGGTCTTACACTGGCTCTCATATAGCAGTGTCGAT
*
73468676 ACCATGTCCCAGATAGGTCTTACACTG
1 ACCATGTCCCAGACAGGTCTTACACTG
73468703 ACACACCACA
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
48 1 0.02
49 50 0.77
50 14 0.22
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (49 bp):
ACCATGTCCCAGACAGGTCTTACACTGGCTCTCATATAGCAGTGTCGAT
Found at i:73468791 original size:48 final size:47
Alignment explanation
Indices: 73468739--73468935 Score: 188
Period size: 48 Copynumber: 4.2 Consensus size: 47
73468729 CAAATAGGTA
*
73468739 TTACACTAGCTTGTATATCGCGAGGCTGATGCATGTCCCAGACATGTC
1 TTACACTAGCTT-TATATCTCGAGGCTGATGCATGTCCCAGACATGTC
* ** * ** *
73468787 TTACACTAGCTCT-CGTCTCAATACCGATGCATGTCCCAGACATGTC
1 TTACACTAGCTTTATATCTCGAGGCTGATGCATGTCCCAGACATGTC
* * * *
73468833 TTACATTAGCTTAAATATCTCGAGG-TCGATGCTTGTCCCAGATATGTC
1 TTACACTAGCTT-TATATCTCGAGGCT-GATGCATGTCCCAGACATGTC
* * *
73468881 TTACACTGGCTCTCAT-TCT-GTGGCT-ATGCATGTCCCAGACATGTC
1 TTACACTAGCT-TTATATCTCGAGGCTGATGCATGTCCCAGACATGTC
73468926 TTACACTAGC
1 TTACACTAGC
73468936 ACACGTATCA
Statistics
Matches: 118, Mismatches: 26, Indels: 13
0.75 0.17 0.08
Matches are distributed among these distances:
45 27 0.23
46 39 0.33
47 5 0.04
48 46 0.39
49 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (47 bp):
TTACACTAGCTTTATATCTCGAGGCTGATGCATGTCCCAGACATGTC
Found at i:73468851 original size:94 final size:93
Alignment explanation
Indices: 73468739--73468935 Score: 252
Period size: 94 Copynumber: 2.1 Consensus size: 93
73468729 CAAATAGGTA
** *
73468739 TTACACTAGCTTGTATATCGCGAGG-CTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGT
1 TTACACTAGCTTAAATATCGCGAGGTC-GATGCATGTCCCAGACATGTCTTACACTAGCTCTCAT
73468803 CTCAATACCGATGCATGTCCCAGACATGTC
65 -TCAATACCGATGCATGTCCCAGACATGTC
* * * * *
73468833 TTACATTAGCTTAAATATCTCGAGGTCGATGCTTGTCCCAGATATGTCTTACACTGGCTCTCATT
1 TTACACTAGCTTAAATATCGCGAGGTCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATT
** ** *
73468898 CTGTGGCTATGCATGTCCCAGACATGTC
66 CAATACCGATGCATGTCCCAGACATGTC
73468926 TTACACTAGC
1 TTACACTAGC
73468936 ACACGTATCA
Statistics
Matches: 88, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
93 33 0.38
94 54 0.61
95 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (93 bp):
TTACACTAGCTTAAATATCGCGAGGTCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATT
CAATACCGATGCATGTCCCAGACATGTC
Found at i:73474991 original size:40 final size:40
Alignment explanation
Indices: 73474515--73474987 Score: 698
Period size: 40 Copynumber: 11.8 Consensus size: 40
73474505 ATTACCACAA
* * * ** *
73474515 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTC
1 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
* *
73474555 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
* *
73474595 GCACAATTGCCTGCGGGTCTTAGCCCGGATATATATCAACTT
1 GCACAAATGCCTGCGGGTCTTAGCCCGG--ATATATCAACTC
*
73474637 GCACAAATGCCTGCGGGTCTTAGCCCGAATATATCAACTC
1 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
*
73474677 GCACAAATGCCTGCGGGTCTTAGCCCGGATGTATCAACTC
1 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
73474717 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
*
73474757 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
73474797 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
* * *
73474837 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTGCGGGTCTTAGCCCGGAT-ATATCAACTC
73474877 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
* * *
73474917 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTGCGGGTCTTAGCCCGGAT-ATATCAACTC
* * *
73474957 GCACAATTGCCTTCGGGACTTAGCCCGGATA
1 GCACAAATGCCTGCGGGTCTTAGCCCGGATA
73474988 AAATTCAAAT
Statistics
Matches: 399, Mismatches: 29, Indels: 11
0.91 0.07 0.03
Matches are distributed among these distances:
39 5 0.01
40 349 0.87
41 8 0.02
42 37 0.09
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
Found at i:73483882 original size:40 final size:40
Alignment explanation
Indices: 73483366--73483878 Score: 751
Period size: 40 Copynumber: 12.8 Consensus size: 40
73483356 ATTACCACAA
* * ** **
73483366 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGAAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
73483406 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
73483446 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGG--ATATATCAACTC
*
73483488 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
73483528 GCACAAATGCCTGCGGGTCTTAGCCCGGATGTATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
73483568 GCACAAATGCCTGCGGGTCTTAGCCCGGATGTATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
73483608 GCACAAATGCCTACGGCTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
73483648 GCACAAATGCCTTCGGGTCTTAGCCCAGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
73483688 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
73483728 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
*
73483768 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
73483808 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
73483848 GCACAATTGCCTTCGGGACTTAGCCCGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
73483879 AAATTCAAAT
Statistics
Matches: 435, Mismatches: 33, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
39 5 0.01
40 385 0.89
41 8 0.02
42 37 0.09
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:73489610 original size:94 final size:95
Alignment explanation
Indices: 73489477--73489655 Score: 252
Period size: 94 Copynumber: 1.9 Consensus size: 95
73489467 CCACAAGCTG
** * * *
73489477 ATGCTATGTCCCAGACAGGTCTTACACTAGCTTGTATATCGCGAGGCTGGTGCATGTCCCAAACA
1 ATGCTATGTCCCAGACAGGTCTTACACTAGCTTAAATATCGCAAGGCCGATGCATGTCCCAAACA
*
73489542 TGTCTTACACTGGCTCTCATCTCAATGCCA
66 TATCTTACACTGGCTCTCATCTCAATGCCA
* * * *
73489572 ATGC-ATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCAAGGCCGATGCATGTCCCAGACA
1 ATGCTATGTCCCAGACAGGTCTTACACTAGCTTAAATATCGCAAGGCCGATGCATGTCCCAAACA
*
73489636 TATCTTACATTGGCTCTCAT
66 TATCTTACACTGGCTCTCAT
73489656 GCTGTGGCTG
Statistics
Matches: 73, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
94 69 0.95
95 4 0.05
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (95 bp):
ATGCTATGTCCCAGACAGGTCTTACACTAGCTTAAATATCGCAAGGCCGATGCATGTCCCAAACA
TATCTTACACTGGCTCTCATCTCAATGCCA
Found at i:73489630 original size:48 final size:46
Alignment explanation
Indices: 73489476--73489650 Score: 181
Period size: 48 Copynumber: 3.7 Consensus size: 46
73489466 ACCACAAGCT
* * * * *
73489476 GATGCTATGTCCCAGACAGGTCTTACACTAGCTTGTATATCGCGAGGCT
1 GATGC-ATGTCCCAGACATGTCTTACACTGGC-T-TATATCTCAAGGCC
* * * *
73489525 GGTGCATGTCCCAAACATGTCTTACACTGGCTCT-CATCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCT-TATATCTCAAGGCC
*
73489571 AATGCATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCAAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTT--ATATCTCAAGGCC
* *
73489619 GATGCATGTCCCAGACATATCTTACATTGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCT
73489651 CTCATGCTGT
Statistics
Matches: 105, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
45 1 0.01
46 36 0.34
47 2 0.02
48 62 0.59
49 4 0.04
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTATATCTCAAGGCC
Found at i:73489670 original size:94 final size:93
Alignment explanation
Indices: 73489473--73489695 Score: 250
Period size: 94 Copynumber: 2.4 Consensus size: 93
73489463 CACACCACAA
* ** * * *
73489473 GCTGATGCTATGTCCCAGACAGGTCTTACACTAGCTTGTATATCGCGAGGCTGGTGCATGTCCCA
1 GCTGATGC-ATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCAAGGCCGATGCATGTCCCA
*
73489538 AACATGTCTTACACTGGCTCTCATCTCAAT
65 AACATATCTTACACTGGCTCTCATCT-AAT
** * * *
73489568 GCCAATGCATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCAAGGCCGATGCATGTCCCAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCAAGGCCGATGCATGTCCCAA
* *
73489633 ACATATCTTACATTGGCTCTCATGCT-GT
66 ACATATCTTACACTGGCTCTCAT-CTAAT
* * *
73489661 GGCTGATGCATTTTCCAAACATGTCTTACACTAGC
1 -GCTGATGCATGTCCCAGACATGTCTTACACTAGC
73489696 ACACATATCA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
93 1 0.01
94 97 0.92
95 8 0.08
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (93 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCAAGGCCGATGCATGTCCCAA
ACATATCTTACACTGGCTCTCATCTAAT
Found at i:73495070 original size:16 final size:16
Alignment explanation
Indices: 73495049--73495080 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
73495039 TGTAACACCA
*
73495049 CAAAAATCCTAAAATC
1 CAAAAATCCCAAAATC
73495065 CAAAAATCCCAAAATC
1 CAAAAATCCCAAAATC
73495081 TTGAATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.56, C:0.28, G:0.00, T:0.16
Consensus pattern (16 bp):
CAAAAATCCCAAAATC
Found at i:73496336 original size:24 final size:24
Alignment explanation
Indices: 73496286--73496336 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
73496276 ATGAATCGGC
* * *
73496286 AAAAGCCAAAATGCCGAAATGCTA
1 AAAAGCCAAAATACCGAAAAGCCA
* *
73496310 AAAAGTCAAAATACTGAAAAGCCA
1 AAAAGCCAAAATACCGAAAAGCCA
73496334 AAA
1 AAA
73496337 GTTTGGCTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.57, C:0.18, G:0.14, T:0.12
Consensus pattern (24 bp):
AAAAGCCAAAATACCGAAAAGCCA
Found at i:73496603 original size:29 final size:29
Alignment explanation
Indices: 73496547--73496661 Score: 135
Period size: 29 Copynumber: 4.0 Consensus size: 29
73496537 GTGAGCATGA
* * *
73496547 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
*
73496575 ATATAAATGTGATTTGTGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
*
73496604 ATATAAAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * **
73496633 ATATGAATATGA-TTGGGATTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
73496661 A
1 A
73496662 GATACAGGTA
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
28 26 0.35
29 49 0.65
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:73499587 original size:16 final size:16
Alignment explanation
Indices: 73499546--73499594 Score: 71
Period size: 16 Copynumber: 3.1 Consensus size: 16
73499536 TTGTAACACC
* *
73499546 CCAAAAATCCCAAAAT
1 CCAAAAATCTCGAAAT
*
73499562 CTAAAAATCTCGAAAT
1 CCAAAAATCTCGAAAT
73499578 CCAAAAATCTCGAAAT
1 CCAAAAATCTCGAAAT
73499594 C
1 C
73499595 TTGAATTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.51, C:0.27, G:0.04, T:0.18
Consensus pattern (16 bp):
CCAAAAATCTCGAAAT
Found at i:73501147 original size:29 final size:29
Alignment explanation
Indices: 73501073--73501174 Score: 113
Period size: 29 Copynumber: 3.6 Consensus size: 29
73501063 TGAATGTGAC
* *
73501073 TGGGCCTAACGGGCCACATAAATGGGATT
1 TGGGCCTAATGGGCCATATAAATGGGATT
*
73501102 TGGGCCTAATGGGCCATATACAA-GTGATT
1 TGGGCCTAATGGGCCATATA-AATGGGATT
73501131 TGGGCCTAATGGGCCATATGAATAT-GG--T
1 TGGGCCTAATGGGCCATAT-AA-ATGGGATT
*
73501159 TGGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
73501175 AAAACAGGTA
Statistics
Matches: 64, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
28 16 0.25
29 43 0.67
30 5 0.08
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATGGGATT
Found at i:73504019 original size:8 final size:8
Alignment explanation
Indices: 73504006--73504041 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
73503996 AGCAAAAGCT
73504006 GAAATGCC
1 GAAATGCC
*
73504014 GAAATGAC
1 GAAATGCC
*
73504022 GAAATGTC
1 GAAATGCC
73504030 GAAATGCC
1 GAAATGCC
73504038 GAAA
1 GAAA
73504042 AGTTGAAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.44, C:0.17, G:0.25, T:0.14
Consensus pattern (8 bp):
GAAATGCC
Found at i:73504315 original size:29 final size:29
Alignment explanation
Indices: 73504259--73504329 Score: 99
Period size: 29 Copynumber: 2.5 Consensus size: 29
73504249 GTGAGCATGA
*
73504259 ATATGAATGTGA-TTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAACAGGCC
* *
73504287 ATATAAATGTGATTTGGGCCTAATAGGCC
1 ATATGAATGTGATTTGGGCCTAACAGGCC
*
73504316 ATATGAATATGATT
1 ATATGAATGTGATT
73504330 AGGCTTAATG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 11 0.30
29 26 0.70
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAACAGGCC
Found at i:73511465 original size:40 final size:39
Alignment explanation
Indices: 73511421--73511645 Score: 290
Period size: 40 Copynumber: 5.7 Consensus size: 39
73511411 GCCACTAGCT
*
73511421 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
73511461 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* *
73511500 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* *
73511540 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** * *
73511580 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
73511620 CAAATG-CTCTCGGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
73511646 TATCATCCGA
Statistics
Matches: 167, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 40 0.24
40 127 0.76
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:73511541 original size:79 final size:80
Alignment explanation
Indices: 73511421--73511605 Score: 291
Period size: 79 Copynumber: 2.3 Consensus size: 80
73511411 GCCACTAGCT
* * * *
73511421 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
73511486 -TATAATAACTCGCA
66 ATATAATAACTCGCA
*
73511500 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
* *
73511565 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
*
73511580 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73511606 ATTAGCCACT
Statistics
Matches: 97, Mismatches: 8, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
79 60 0.62
80 37 0.38
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:73514928 original size:33 final size:34
Alignment explanation
Indices: 73514854--73514928 Score: 116
Period size: 34 Copynumber: 2.2 Consensus size: 34
73514844 TTTGCATTTA
*
73514854 TGATATTGTTACTATAATGGGCTAAGGCCCACAC
1 TGATACTGTTACTATAATGGGCTAAGGCCCACAC
*
73514888 TGATACTGTTACTGTAATGGGCTAAGG-CCACAC
1 TGATACTGTTACTATAATGGGCTAAGGCCCACAC
*
73514921 TGTTACTG
1 TGATACTG
73514929 GACTATCACT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
33 13 0.34
34 25 0.66
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (34 bp):
TGATACTGTTACTATAATGGGCTAAGGCCCACAC
Found at i:73523067 original size:27 final size:27
Alignment explanation
Indices: 73523033--73523210 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
73523023 TGAATTGTAC
73523033 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
73523060 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73523086 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
73523114 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
73523142 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
73523169 AGCACTAAGTGTTCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
73523196 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73523211 GGCTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:73523094 original size:54 final size:55
Alignment explanation
Indices: 73523008--73523210 Score: 191
Period size: 54 Copynumber: 3.7 Consensus size: 55
73522998 GAGATTGGCG
* *
73523008 CTAAGTGCGCG-GAATTGAAT-TGTACAGCACTAAGTGTGCGATTTGACTATGTTGCA
1 CTAAGTGTGCGAGAA-TGAATATGT--AGCACTAAGTGTGCGATTTGACTATGTAGCA
* * **
73523064 CTAAGTGTGCGA-AATGAATATG-ATGCACTAAGTGTGCGAATTGACCATGCGGCA
1 CTAAGTGTGCGAGAATGAATATGTA-GCACTAAGTGTGCGATTTGACTATGTAGCA
** * * *
73523118 CTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCA
1 CTAAGTGTGCGAGAATGAATATGTAGCACTAAGTGTGCGATTTGACTATGTAGCA
* * * * *
73523173 CTAAGTGTTCGAG-TTGATTATATAGCACTGAGTGTGCG
1 CTAAGTGTGCGAGAATGAATATGTAGCACTAAGTGTGCG
73523211 GGCTCAATAT
Statistics
Matches: 124, Mismatches: 18, Indels: 12
0.81 0.12 0.08
Matches are distributed among these distances:
53 1 0.01
54 60 0.48
55 48 0.39
56 15 0.12
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (55 bp):
CTAAGTGTGCGAGAATGAATATGTAGCACTAAGTGTGCGATTTGACTATGTAGCA
Found at i:73523174 original size:82 final size:81
Alignment explanation
Indices: 73523034--73523189 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
73523024 GAATTGTACA
* *
73523034 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
73523099 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
73523115 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
* *
73523179 GTTCGAGTTGA
64 GTGCGAATTGA
73523190 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:73523201 original size:82 final size:81
Alignment explanation
Indices: 73523030--73523210 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
73523020 AATTGAATTG
* *
73523030 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
73523095 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
73523111 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* * **
73523175 AAGTGTTCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
73523193 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
73523211 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:73540524 original size:39 final size:39
Alignment explanation
Indices: 73540430--73540579 Score: 185
Period size: 39 Copynumber: 3.8 Consensus size: 39
73540420 CTACGGGTCT
* * * * * *
73540430 TTAAGCCCGGATATAATTCCAGCA-TATAGACTGCGGGTCT
1 TTAAGTCCGGATACAATTCCAGCACGA-AGCCTGC-GGACC
* *
73540470 TTAAGCCCGGATACAATTCCAGCACGAAGCTTGCGGACC
1 TTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACC
*
73540509 TTAAGTCCAGATACAATTCCAGCACGAAGCCTGCGGACC
1 TTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACC
*
73540548 TTAAGTCCGGATACAATTCCAGCACAAAGCCT
1 TTAAGTCCGGATACAATTCCAGCACGAAGCCT
73540580 ACAGGACTTC
Statistics
Matches: 98, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
39 69 0.70
40 28 0.29
41 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (39 bp):
TTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACC
Found at i:73540597 original size:78 final size:78
Alignment explanation
Indices: 73540412--73540716 Score: 221
Period size: 78 Copynumber: 3.9 Consensus size: 78
73540402 CAATCACCAA
* * * * * *
73540412 CACAAAGCCTACGGGTCTTTAAGCCCGGATATAATTCCAGCA-TATAGACTGCGGGTCTTTAAGC
1 CACAAAGCCTAC-GGAC-TTAAGCCCAGATATAATTCCAGCACGA-AGCCTGCGGGACCTTAAGC
73540476 CCGGATACAATTCCAG
63 CCGGATACAATTCCAG
* * * * * *
73540492 CACGAAGCTTGCGGACCTTAAGTCCAGATACAATTCCAGCACGAAGCCTGC-GGACCTTAAGTCC
1 CACAAAGCCTACGGA-CTTAAGCCCAGATATAATTCCAGCACGAAGCCTGCGGGACCTTAAGCCC
73540556 GGATACAATTCCAG
65 GGATACAATTCCAG
* ** *
73540570 CACAAAGCCTACAGGACTTCAGCCCAGATATAACACCAGCACGAATGCCTTCAGGG--CTT-AGC
1 CACAAAGCCTAC-GGACTTAAGCCCAGATATAATTCCAGCACGAA-GCCTGC-GGGACCTTAAGC
* ** *
73540632 CCGGATATAACACTAG
63 CCGGATACAATTCCAG
* ** * ** *
73540648 CACGAATGCCTTTGAGACTT-AGCCCGGATATAACACCAGCACGAATGCCTTCGGGA-CTT-AGC
1 CAC-AAAGCCTACG-GACTTAAGCCCAGATATAATTCCAGCACGAA-GCCTGCGGGACCTTAAGC
73540710 CCGGATA
63 CCGGATA
73540717 TAACACCATT
Statistics
Matches: 186, Mismatches: 30, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
77 3 0.02
78 119 0.64
79 51 0.27
80 11 0.06
81 2 0.01
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (78 bp):
CACAAAGCCTACGGACTTAAGCCCAGATATAATTCCAGCACGAAGCCTGCGGGACCTTAAGCCCG
GATACAATTCCAG
Found at i:73540609 original size:39 final size:39
Alignment explanation
Indices: 73540527--73540724 Score: 224
Period size: 39 Copynumber: 5.1 Consensus size: 39
73540517 AGATACAATT
* * * **
73540527 CCAGCACGAA-GCCTGC-GGACCTTAAGTCCGGATACAATT
1 CCAGCACGAATGCCTTCAGGA-CTT-AGCCCGGATATAACA
* * *
73540566 CCAGCAC-AAAGCCTACAGGACTTCAGCCCAGATATAACA
1 CCAGCACGAATGCCTTCAGGACTT-AGCCCGGATATAACA
*
73540605 CCAGCACGAATGCCTTCAGGGCTTAGCCCGGATATAACA
1 CCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAACA
* *
73540644 CTAGCACGAATGCCTT-TGAGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCCTTCAG-GACTTAGCCCGGATATAACA
*
73540683 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAACA
73540722 CCA
1 CCA
73540725 TTATAAAGCC
Statistics
Matches: 138, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
38 3 0.02
39 118 0.86
40 17 0.12
ACGTcount: A:0.31, C:0.31, G:0.21, T:0.18
Consensus pattern (39 bp):
CCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAACA
Found at i:73540830 original size:28 final size:28
Alignment explanation
Indices: 73540797--73540878 Score: 92
Period size: 28 Copynumber: 2.9 Consensus size: 28
73540787 ATTTAATCAT
** *
73540797 TCAATATTTTTCACACTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* *
73540825 TCAATATCTCGCACATTAAGTGCCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* * *
73540853 TCAATATTTCGTACACTGAGTACCAT
1 TCAATATTTCGCACACTAAGTGCCAT
73540879 ATTTGATTGC
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.37
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGCCATTC
Found at i:73546942 original size:47 final size:47
Alignment explanation
Indices: 73546888--73547176 Score: 389
Period size: 47 Copynumber: 6.1 Consensus size: 47
73546878 TTAGGATTTT
** * *
73546888 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
73546935 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGACCGAATGGCCA
1 ATGTGATGAATGTGAACATG--TATATAT--GTGATAAGGCCGAATGGCCA
* * *
73546986 ATGCGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
** *
73547033 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * *
73547080 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
73547127 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
73547174 ATG
1 ATG
73547177 CGAAATGTGT
Statistics
Matches: 217, Mismatches: 21, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
47 170 0.78
49 12 0.06
51 35 0.16
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:73547286 original size:46 final size:46
Alignment explanation
Indices: 73547150--73547286 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
73547140 GAACATGTAT
* *
73547150 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * *
73547196 ATATGAGGTAAAGCCGAATGGCTAATACGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
73547242 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
73547287 TGTATATATA
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.35, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:73547489 original size:37 final size:37
Alignment explanation
Indices: 73547439--73547575 Score: 152
Period size: 37 Copynumber: 3.7 Consensus size: 37
73547429 AACCTGGGAT
* * * * *
73547439 TAAGACCAGATGACCATATGTGGTGACTATGTCCGGG
1 TAAGACCCGATGACTATGTGTGGAGACTTTGTCCGGG
* *
73547476 TAAGACCCGATGACTACGTGTGGAGATTTTGTCCGGG
1 TAAGACCCGATGACTATGTGTGGAGACTTTGTCCGGG
* *
73547513 GAAGACCCGATGACTATGTGTGGAG-CTTTTGTTCGGG
1 TAAGACCCGATGACTATGTGTGGAGAC-TTTGTCCGGG
*
73547550 TAAGACCCGATAACT-TCGTGTGGAGA
1 TAAGACCCGATGACTAT-GTGTGGAGA
73547576 TTTCATCTGA
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
36 1 0.01
37 83 0.99
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
TAAGACCCGATGACTATGTGTGGAGACTTTGTCCGGG
Found at i:73547535 original size:74 final size:74
Alignment explanation
Indices: 73547440--73547578 Score: 190
Period size: 74 Copynumber: 1.9 Consensus size: 74
73547430 ACCTGGGATT
* *
73547440 AAGACCAGATGACCATATGTGGTGAC-TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATT
1 AAGACCAGATGACCATATGTGGAG-CTTATGTCCGGGTAAGACCCGATAACTACGTGTGGAGATT
73547504 TTGTCCGGGG
65 TTGTCCGGGG
* * * * * *
73547514 AAGACCCGATGACTATGTGTGGAGCTTTTGTTCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 AAGACCAGATGACCATATGTGGAGCTTATGTCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
73547579 CATCTGAGCT
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
73 1 0.02
74 55 0.98
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (74 bp):
AAGACCAGATGACCATATGTGGAGCTTATGTCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
TGTCCGGGG
Found at i:73551543 original size:39 final size:39
Alignment explanation
Indices: 73551358--73551665 Score: 241
Period size: 39 Copynumber: 7.8 Consensus size: 39
73551348 CAATCACCAA
* *
73551358 CACAAAGCCTACGGGTCTTTAAGCCCGGATATAATTCCAG
1 CACAAAGCCTGCGGGAC-TTAAGCCCGGATATAATTCCAG
* * * * *
73551398 CATATAGCCTGCGGGTCTTTAAGCCTGGATACAATTCCAG
1 CACAAAGCCTGCGGGAC-TTAAGCCCGGATATAATTCCAG
** * * * *
73551438 CATGAAGCTTGC-GGACCTTAAGTCCAGATACAATTCCAG
1 CACAAAGCCTGCGGGA-CTTAAGCCCGGATATAATTCCAG
* * *
73551477 CACGAAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAG
1 CACAAAGCCTGCGGGA-CTTAAGCCCGGATATAATTCCAG
* **
73551516 CACAAAGCCTGCGGGACTTCAGCCCGGATATAACACCAG
1 CACAAAGCCTGCGGGACTTAAGCCCGGATATAATTCCAG
* * **
73551555 CACGAATGCCTTCAGGG-CTT-AGCCCGGATATAACACCAG
1 CAC-AAAGCCTGC-GGGACTTAAGCCCGGATATAATTCCAG
* * **
73551594 CACGAATGCCTTCGGGACTT-AGCCCGGATATAACACCAG
1 CAC-AAAGCCTGCGGGACTTAAGCCCGGATATAATTCCAG
* *
73551633 CACGAATGCCTTCGGGACTT-AGCCCGGATATAA
1 CAC-AAAGCCTGCGGGACTTAAGCCCGGATATAA
73551666 CACCATTATA
Statistics
Matches: 240, Mismatches: 23, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
38 3 0.01
39 176 0.73
40 58 0.24
41 3 0.01
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (39 bp):
CACAAAGCCTGCGGGACTTAAGCCCGGATATAATTCCAG
Found at i:73551666 original size:39 final size:39
Alignment explanation
Indices: 73551473--73551670 Score: 269
Period size: 39 Copynumber: 5.1 Consensus size: 39
73551463 AGATACAATT
* * * **
73551473 CCAGCACGAA-GCCTGC-GGACCTTAAGTCCGGATACAATT
1 CCAGCACGAATGCCTTCGGGA-CTT-AGCCCGGATATAACA
* *
73551512 CCAGCAC-AAAGCCTGCGGGACTTCAGCCCGGATATAACA
1 CCAGCACGAATGCCTTCGGGACTT-AGCCCGGATATAACA
73551551 CCAGCACGAATGCCTTCAGGG-CTTAGCCCGGATATAACA
1 CCAGCACGAATGCCTTC-GGGACTTAGCCCGGATATAACA
73551590 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA
73551629 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA
73551668 CCA
1 CCA
73551671 TTATAAAGTC
Statistics
Matches: 147, Mismatches: 7, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
38 5 0.03
39 126 0.86
40 13 0.09
41 3 0.02
ACGTcount: A:0.29, C:0.32, G:0.23, T:0.17
Consensus pattern (39 bp):
CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA
Found at i:73551776 original size:28 final size:28
Alignment explanation
Indices: 73551743--73551824 Score: 92
Period size: 28 Copynumber: 2.9 Consensus size: 28
73551733 ATTTAATCAT
** *
73551743 TCAATATTTTTCACACTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* *
73551771 TCAATATCTCGCACATTAAGTGCCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* * *
73551799 TCAATATTTCGTACACTGAGTACCAT
1 TCAATATTTCGCACACTAAGTGCCAT
73551825 ATTTGATTGC
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.37
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGCCATTC
Found at i:73552774 original size:13 final size:14
Alignment explanation
Indices: 73552756--73552789 Score: 52
Period size: 13 Copynumber: 2.4 Consensus size: 14
73552746 AGATGACACC
73552756 TTTATTC-TTTTAT
1 TTTATTCATTTTAT
73552769 TTTATTCATTTTAT
1 TTTATTCATTTTAT
73552783 TATTATT
1 T-TTATT
73552790 TTTAACCAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.37
14 7 0.37
15 5 0.26
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTATTCATTTTAT
Found at i:73558528 original size:17 final size:17
Alignment explanation
Indices: 73558506--73558539 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
73558496 TTAGATAAGC
73558506 GGCTAAAAGAGAGCGTG
1 GGCTAAAAGAGAGCGTG
73558523 GGCTAAAAGAGAGCGTG
1 GGCTAAAAGAGAGCGTG
73558540 TTGCTCTTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.41, T:0.12
Consensus pattern (17 bp):
GGCTAAAAGAGAGCGTG
Found at i:73559114 original size:40 final size:40
Alignment explanation
Indices: 73559014--73559217 Score: 245
Period size: 40 Copynumber: 5.1 Consensus size: 40
73559004 TGGATGATAA
*
73559014 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* * *
73559055 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
73559095 CCGGGCTAAGTTCCAAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
73559135 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
73559175 CTGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
73559214 CCGG
1 CCGG
73559218 TTAAATGCCG
Statistics
Matches: 141, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
38 2 0.01
39 16 0.11
40 96 0.68
41 23 0.16
42 4 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:73561172 original size:47 final size:46
Alignment explanation
Indices: 73560966--73561280 Score: 266
Period size: 47 Copynumber: 6.7 Consensus size: 46
73560956 GGGATAAGTT
*
73560966 GCCGATGCCATGCCCCAGACATGGTCTTACACTGGCTATCATCATCGAG
1 GCCGATG-CATGTCCCAGACA-GGTCTTACACTGGC-ATCATCATCGAG
* * * * * *
73561015 GCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTTTTATAC-AT
1 GCCGATG-CATGTCCCAGACA-GGTCTTACACTGGC-ATC-ATCAT-CGAG
* * *
73561065 GCTGATGCATGTCCCAGACATGTCTTACACTAGCA-CAACTC-TC-A-
1 GCCGATGCATGTCCCAGACAGGTCTTACACTGGCATC-A-TCATCGAG
* *
73561109 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCGTCGAG
1 GCCGATGCATGTCCCAGACAGGTCTTACACTGGC-ATCATCATCGAG
* * *
73561156 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATC-TCTAT
1 GCCGATGCATGTCCCAGACAGGTCTTACACTGGCA-TCATCATCGAG
* * * *
73561202 GTCGATGCCATGTCCTAGACATGGTCTTACACTGGCACTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACA-GGTCTTACACTGGCA-TCATCATCGAG
*
73561250 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACAGGTCTTACACT
73561281 AGCACATAAG
Statistics
Matches: 224, Mismatches: 30, Indels: 27
0.80 0.11 0.10
Matches are distributed among these distances:
44 33 0.15
45 6 0.03
46 24 0.11
47 63 0.28
48 38 0.17
49 50 0.22
50 9 0.04
51 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACAGGTCTTACACTGGCATCATCATCGAG
Found at i:73561254 original size:141 final size:140
Alignment explanation
Indices: 73560966--73561280 Score: 379
Period size: 141 Copynumber: 2.2 Consensus size: 140
73560956 GGGATAAGTT
* *
73560966 GCCGATGCCATGCCCCAGACATGGTCTTACACTGGCTATCATCATCGAGGCCAATGCCATGTCCC
1 GCCGATG-CATGTCCCAGACA-CGTCTTACACTGGCTATCATCATCGAGGCCAATGCCATGTCCC
* * *
73561031 AGACATGGTCTTACACTAGCTCTCTTTTATACATGCTGATGCATGTCCCAGACATGTCTTACACT
64 AGACATGGTCTTACACTAGCACTCATCTATA-ATGCTGATGCATGTCCCAGACATGTCTTACACT
*
73561096 AGCACAACTCTCA
128 AGCACAAATCTCA
* *
73561109 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCGTCGAGGCCGATG-CATGTCCCAG
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCCAATGCCATGTCCCAG
* * *
73561173 ACAT-GTCTTACACTGGCACTCATCTCT-ATG-TCGATGCCATGTCCTAGACATGGTCTTACACT
66 ACATGGTCTTACACTAGCACTCATCTATAATGCT-GATG-CATGTCCCAGACAT-GTCTTACACT
* * *
73561235 GGCACTCATAATGT-G
128 AGCA--CA-AATCTCA
*
73561250 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACACGTCTTACACT
73561281 AGCACATAAG
Statistics
Matches: 151, Mismatches: 15, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
136 1 0.01
137 7 0.05
138 13 0.09
139 31 0.21
140 14 0.09
141 63 0.42
142 15 0.10
143 7 0.05
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (140 bp):
GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCCAATGCCATGTCCCAG
ACATGGTCTTACACTAGCACTCATCTATAATGCTGATGCATGTCCCAGACATGTCTTACACTAGC
ACAAATCTCA
Found at i:73561264 original size:94 final size:92
Alignment explanation
Indices: 73560966--73561284 Score: 324
Period size: 94 Copynumber: 3.4 Consensus size: 92
73560956 GGGATAAGTT
* * * *
73560966 GCCGATGCCATGCCCCAGACATGGTCTTACACTGGCTATCATCATCGAGGCCAATGCCATGTCCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGC-ATCATC-TCTA-GCCGATGCCATGTCCC
* * * **
73561031 AGACATGGTCTTACACTAGCTCTCTTTTATACAT-
61 AGACATGGTCTTACACTGGCACTC--ATA-ATGTG
* *
73561065 GCTGATGCATGTCCCAGACATGTCTTACACTAGCA-CAACTCTCAGCCGATG-CATGTCCCAGAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCATCATCTCT-AGCCGATGCCATGTCCCAGAC
* ** *
73561128 A-CGTCTTACACTGGCTA-TCATCGTCGAG
65 ATGGTCTTACACTGGC-ACTCATAAT-GTG
* * *
73561156 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTATGTCGATGCCATGTCCTAGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCA-TCATCTCTA-GCCGATGCCATGTCCCAGA
73561221 CATGGTCTTACACTGGCACTCATAATGTG
64 CATGGTCTTACACTGGCACTCATAATGTG
73561250 GCCGATGCATGTCCCAGACATGTCTTACACTAGCA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCA
73561285 CATAAGTAAT
Statistics
Matches: 185, Mismatches: 25, Indels: 25
0.79 0.11 0.11
Matches are distributed among these distances:
90 1 0.01
91 33 0.18
92 15 0.08
93 25 0.14
94 57 0.31
95 22 0.12
96 1 0.01
97 12 0.06
98 13 0.07
99 6 0.03
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCATCATCTCTAGCCGATGCCATGTCCCAGACA
TGGTCTTACACTGGCACTCATAATGTG
Found at i:73562016 original size:12 final size:12
Alignment explanation
Indices: 73561999--73562023 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73561989 CAAAAATGTA
73561999 AAAATCATCAAG
1 AAAATCATCAAG
73562011 AAAATCATCAAG
1 AAAATCATCAAG
73562023 A
1 A
73562024 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:73568732 original size:40 final size:40
Alignment explanation
Indices: 73568672--73568855 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
73568662 TATTCGAATG
*
73568672 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
73568712 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * *
73568752 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
73568792 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
73568832 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
73568856 CTTGTGCGAG
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 120 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Done.