Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 225 of 333
Found at i:74235517 original size:16 final size:16
Alignment explanation
Indices: 74235496--74235537 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
74235486 TTATTAAATT
*
74235496 ATATATTTTAATTATA
1 ATATATTTTAATAATA
74235512 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
74235527 AT-TATGTTTAA
1 ATATAT-TTTAA
74235538 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:74235522 original size:15 final size:15
Alignment explanation
Indices: 74235487--74235528 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
74235477 TTAAGAATTT
*
74235487 TATTAAATTAT-ATA
1 TATTTAATTATAATA
74235501 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
74235515 TATTTAATAATAAT
1 TATTTAATTATAAT
74235529 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:74235778 original size:16 final size:16
Alignment explanation
Indices: 74235753--74235820 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
74235743 GATTTGCTAT
74235753 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
* *
74235769 TACACATCTAATCCAT
1 TACACCTCTAATCCAA
74235785 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
74235801 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
74235817 TACA
1 TACA
74235821 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:74240533 original size:48 final size:48
Alignment explanation
Indices: 74240343--74240568 Score: 221
Period size: 48 Copynumber: 4.8 Consensus size: 48
74240333 GTTATGTACA
* *
74240343 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATTGATATGTA
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTG
**** * *
74240391 ATTTTGTGTAAGACCATAGT-TGGG-C-T---ATCGTCATTGATATGTG
1 ATCCCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATTGATATGTG
** * ** **
74240434 ATCCCATGTAAGACCATGTCTAAGACATGGCATTGGCATCGACCTACG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTG
74240482 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTG
* * * * *
74240530 ATCCTATGTAAGACCATATCCGGGATATGGAATTGGCAT
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
74240569 CCTATCATGT
Statistics
Matches: 138, Mismatches: 33, Indels: 14
0.75 0.18 0.08
Matches are distributed among these distances:
42 2 0.01
43 28 0.20
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 102 0.74
49 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (48 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTG
Found at i:74254528 original size:43 final size:43
Alignment explanation
Indices: 74254470--74254638 Score: 200
Period size: 43 Copynumber: 4.0 Consensus size: 43
74254460 TAAGCTCGTA
* * *
74254470 CAATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATAT
1 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAT
* * * * * * *
74254512 CGATGCCACTGTCCCAGACAGGGTCTTACACGAAATCGA-TTAA
1 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATC-ACATAT
*
74254555 CAATGCCAATGTCCCTGACATGGTCTTACATGTAATCACA-AT
1 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAT
74254597 ACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAT
1 -CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAT
74254639 CTCGATAGCG
Statistics
Matches: 103, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
42 8 0.08
43 94 0.91
44 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.27
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAT
Found at i:74255844 original size:27 final size:27
Alignment explanation
Indices: 74255746--74255835 Score: 110
Period size: 27 Copynumber: 3.3 Consensus size: 27
74255736 TTTAGTTTAC
* * *
74255746 TAAAATTACCGAAATACGCCTAG-TTTG
1 TAAAATTACTGAAATAC-CCTCGACTTG
* *
74255773 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTCGACTTG
*
74255800 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCCTCGACTTG
74255827 TAAAATTAC
1 TAAAATTAC
74255836 CAAAGTACCC
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
26 4 0.07
27 52 0.93
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.31
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGACTTG
Found at i:74255892 original size:27 final size:27
Alignment explanation
Indices: 74255849--74256051 Score: 244
Period size: 27 Copynumber: 7.5 Consensus size: 27
74255839 AGTACCCACA
* * *
74255849 ATTTACAGAATTACCATTTTACCCCCG
1 ATTTACAAAATTACCGTTTTACCCTCG
* * *
74255876 ATTTACATAATTACCATTTTACCCCCG
1 ATTTACAAAATTACCGTTTTACCCTCG
* *
74255903 ATTTACATAATTATCGTTTTACCCTCG
1 ATTTACAAAATTACCGTTTTACCCTCG
*
74255930 ACTTACAAAATTACCGTTTTACCCTCG
1 ATTTACAAAATTACCGTTTTACCCTCG
* *
74255957 ATTTACAAAATTATCGTTTTACCGTCG
1 ATTTACAAAATTACCGTTTTACCCTCG
* * * *
74255984 ATTTATAGAATTACTGTTTTACCCTTG
1 ATTTACAAAATTACCGTTTTACCCTCG
* **
74256011 ATTTACAGAATTACTATTTTACCCTCG
1 ATTTACAAAATTACCGTTTTACCCTCG
74256038 ATTTACAAAATTAC
1 ATTTACAAAATTAC
74256052 TAAAATACCC
Statistics
Matches: 156, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 156 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.39
Consensus pattern (27 bp):
ATTTACAAAATTACCGTTTTACCCTCG
Found at i:74255915 original size:81 final size:81
Alignment explanation
Indices: 74255849--74256051 Score: 271
Period size: 81 Copynumber: 2.5 Consensus size: 81
74255839 AGTACCCACA
* * *
74255849 ATTTACAGAATTACCATTTTACCCCCGATTTACATAATTACCATTTTACCCCCGATTTACATAAT
1 ATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCCCGATTTACAGAAT
*
74255914 TATCGTTTTACCCTCG
66 TACCGTTTTACCCTCG
* * * * * ** *
74255930 ACTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTATCGTTTTACCGTCGATTTATAGAAT
1 ATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCCCGATTTACAGAAT
* *
74255995 TACTGTTTTACCCTTG
66 TACCGTTTTACCCTCG
*
74256011 ATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
1 ATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTAC
74256052 TAAAATACCC
Statistics
Matches: 103, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 103 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.39
Consensus pattern (81 bp):
ATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCCCGATTTACAGAAT
TACCGTTTTACCCTCG
Found at i:74256060 original size:27 final size:27
Alignment explanation
Indices: 74255774--74256197 Score: 119
Period size: 27 Copynumber: 15.6 Consensus size: 27
74255764 CCTAGTTTGT
* * **
74255774 AAAAATACTGAAATACCCTCGATTTGT
1 AAAATTACTAAAATACCCTCGATTTAC
* * * **
74255801 AAAATTACTGAAATACCTTCGACTTGT
1 AAAATTACTAAAATACCCTCGATTTAC
* * * *
74255828 AAAATTACCAAAGTACCCACAATTTAC
1 AAAATTACTAAAATACCCTCGATTTAC
* * *** *
74255855 AGAATTACCATTTTACCCCCGATTTAC
1 AAAATTACTAAAATACCCTCGATTTAC
* * *** *
74255882 ATAATTACCATTTTACCCCCGATTTAC
1 AAAATTACTAAAATACCCTCGATTTAC
* ** *
74255909 ATAATTATCGT--TTTACCCTCGACTTAC
1 AAAATTA-C-TAAAATACCCTCGATTTAC
*****
74255936 AAAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACTAAAATACCCTCGATTTAC
** * *
74255963 AAAATTATCGT--TTTACCGTCGATTTAT
1 AAAATTA-C-TAAAATACCCTCGATTTAC
* **** *
74255990 AGAATTACTGTTTTACCCTTGATTTAC
1 AAAATTACTAAAATACCCTCGATTTAC
* ***
74256017 AGAATTACTATTTTACCCTCGATTTAC
1 AAAATTACTAAAATACCCTCGATTTAC
* * **
74256044 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACTAAAATACCCTCGATTTAC
* * **
74256071 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACTAAAATACCCTCGA-TTTAC
*
74256098 AAAATTACCAAAATACCC-CTGATTTAC
1 AAAATTACTAAAATACCCTC-GATTTAC
* *
74256125 AAAGTTAC-ATAAATACCCTTGACTTT-C
1 AAAATTACTA-AAATACCCTCGA-TTTAC
* * *
74256152 TAAAAATTA-TAGAAATACCATTGGTTTAC
1 --AAAATTACTA-AAATACCCTCGATTTAC
*
74256181 AAAATTACTGAAATACC
1 AAAATTACTAAAATACC
74256198 TTTGGTTTGT
Statistics
Matches: 323, Mismatches: 56, Indels: 36
0.78 0.13 0.09
Matches are distributed among these distances:
25 1 0.00
26 3 0.01
27 291 0.90
28 10 0.03
29 18 0.06
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.34
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTCGATTTAC
Found at i:74256202 original size:27 final size:27
Alignment explanation
Indices: 74256003--74256205 Score: 142
Period size: 27 Copynumber: 7.4 Consensus size: 27
74255993 ATTACTGTTT
* * ***
74256003 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTTGGTTTACAAAATTACTAAAA
* *
74256030 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
** *
74256057 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * ** *
74256084 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * *
74256111 TACCCCTGATTTACAAAGTTAC-ATAAA
1 TACCCTTGGTTTACAAAATTACTA-AAA
*
74256138 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTG-GTTTAC--AAAATTACTA-AAA
* *
74256167 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
*
74256194 TACCTTTGGTTT
1 TACCCTTGGTTT
74256206 GTTGATTTAC
Statistics
Matches: 144, Mismatches: 25, Indels: 14
0.79 0.14 0.08
Matches are distributed among these distances:
26 1 0.01
27 118 0.82
28 7 0.05
29 18 0.12
ACGTcount: A:0.37, C:0.19, G:0.08, T:0.35
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACTAAAA
Found at i:74256306 original size:27 final size:27
Alignment explanation
Indices: 74256246--74256323 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
74256236 AAATGACTAA
* *
74256246 AATACCCCTATTAGGGTAAAGTGACCGT
1 AATACCCCT-GTAGGGTAAAATGACCGT
74256274 AA-ACCCCTGTAGGGTAAAATGACCGT
1 AATACCCCTGTAGGGTAAAATGACCGT
*
74256300 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTAGGGTAAAATGAC
74256324 GAATATGCCC
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 18 0.39
27 26 0.57
28 2 0.04
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.23
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAATGACCGT
Found at i:74257511 original size:25 final size:25
Alignment explanation
Indices: 74257482--74257529 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74257472 TTATAACATG
* * *
74257482 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
74257507 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
74257530 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:74257613 original size:11 final size:11
Alignment explanation
Indices: 74257577--74257632 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
74257567 CATGGTATGT
74257577 ATGATATGCAC
1 ATGATATGCAC
* *
74257588 ATGACATG--T
1 ATGATATGCAC
74257597 ATGATATGCAC
1 ATGATATGCAC
*
74257608 ATGATATG--T
1 ATGATATGCAC
74257617 ATGATATGCAC
1 ATGATATGCAC
74257628 ATGAT
1 ATGAT
74257633 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:74257632 original size:20 final size:20
Alignment explanation
Indices: 74257566--74257632 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
74257556 ATTTTGATAA
*
74257566 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
74257586 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
74257606 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
74257626 ACATGAT
1 ACATGAT
74257633 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:74257709 original size:24 final size:24
Alignment explanation
Indices: 74257682--74257847 Score: 187
Period size: 24 Copynumber: 7.0 Consensus size: 24
74257672 GAGGAAGCGA
74257682 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
74257706 AAAA-GGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
* *
74257729 AAAAGGGCTTATACCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
* *
74257753 AAAAGGGCTTACGCCCCATTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
74257777 -AAAGGGCTTATGCCCCTGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
* * *
74257799 AGAAAAGGCTTTTGCCCCAATTATT
1 A-AAAGGGCTTATGCCCCAGTTATT
*
74257824 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
74257848 ATGATAAAGC
Statistics
Matches: 119, Mismatches: 17, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
22 1 0.01
23 40 0.34
24 66 0.55
25 12 0.10
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:74257751 original size:47 final size:46
Alignment explanation
Indices: 74257682--74257847 Score: 181
Period size: 47 Copynumber: 3.5 Consensus size: 46
74257672 GAGGAAGCGA
* *
74257682 AAAAGGGCTTATGCCCCAGTTATTAAAAGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGCTTATGCCCCAATTAT
* * *
74257728 CAAAAGGGCTTATACCCCAGTTATCAAAAGGGCTTACGCCCCATTTAT
1 -AAAAGGGCTTATGCCCCAGTTATCAAAA-GGCTTATGCCCCAATTAT
* * * *
74257776 TAAAGGGCTTATGCCCCTGTTATAGAAAAGGCTTTTGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTAT-CAAAAGGCTTATGCCCCAATTA-T
*
74257824 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
74257848 ATGATAAAGC
Statistics
Matches: 100, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
47 60 0.60
48 30 0.30
49 10 0.10
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGCTTATGCCCCAATTAT
Found at i:74257798 original size:71 final size:71
Alignment explanation
Indices: 74257682--74257847 Score: 201
Period size: 71 Copynumber: 2.3 Consensus size: 71
74257672 GAGGAAGCGA
* *
74257682 AAAAGGGCTTATGCCCCAGTTATTAAAAGGCTTATGCCCCAGTTATCA-AAAGGGCTTATACCCC
1 AAAAGGGCTTACGCCCCAGTTATTAAAAGGCTTATGCCCCAGTTAT-AGAAAAGGCTTATACCCC
*
74257746 AGTTATC
65 AATTATC
* * * * *
74257753 AAAAGGGCTTACGCCCCATTTATTAAAGGGCTTATGCCCCTGTTATAGAAAAGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAAGGCTTATGCCCCAGTTATAGAAAAGGCTTATACCCCA
*
74257818 ATTATT
66 ATTATC
*
74257824 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
74257848 ATGATAAAGC
Statistics
Matches: 81, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
70 1 0.01
71 70 0.86
72 10 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAAGGCTTATGCCCCAGTTATAGAAAAGGCTTATACCCCA
ATTATC
Found at i:74260448 original size:13 final size:13
Alignment explanation
Indices: 74260430--74260457 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
74260420 AGAAAATTGA
74260430 AAAGATGAAAAAT
1 AAAGATGAAAAAT
74260443 AAAGATGAAAAAT
1 AAAGATGAAAAAT
74260456 AA
1 AA
74260458 TAAAATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (13 bp):
AAAGATGAAAAAT
Found at i:74273224 original size:68 final size:66
Alignment explanation
Indices: 74273152--74273323 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
74273142 CATCATGTGT
* * * *
74273152 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
74273215 TGTAG
62 TGTAG
** * *
74273220 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
74273285 AG
65 AG
* * * *
74273287 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
74273324 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:74273257 original size:64 final size:64
Alignment explanation
Indices: 74273176--74273359 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
74273166 AGACATTATG
* * *
74273176 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
74273240 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
74273305 AA
63 AA
* * *
74273307 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
74273360 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:74276983 original size:32 final size:32
Alignment explanation
Indices: 74276945--74277010 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
74276935 TTTAAAAGAG
74276945 ACATCAAATTATTCTAAAGATTTATTCGGGAT
1 ACATCAAATTATTCTAAAGATTTATTCGGGAT
*
74276977 ACATCAAATTATTCTAGAGATTTATTCGGGAT
1 ACATCAAATTATTCTAAAGATTTATTCGGGAT
74277009 AC
1 AC
74277011 GCAATGTCAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (32 bp):
ACATCAAATTATTCTAAAGATTTATTCGGGAT
Found at i:74278689 original size:21 final size:22
Alignment explanation
Indices: 74278661--74278707 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 22
74278651 TGGTAATTGT
74278661 TTGTTATTCAAA-A-GCAAAGC
1 TTGTTATTCAAATATGCAAAGC
* *
74278681 TTGTGTATTGAAATATTCAAAGC
1 TTGT-TATTCAAATATGCAAAGC
74278704 TTGT
1 TTGT
74278708 ACATAAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 4 0.18
21 7 0.32
22 1 0.05
23 10 0.45
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (22 bp):
TTGTTATTCAAATATGCAAAGC
Found at i:74279619 original size:16 final size:16
Alignment explanation
Indices: 74279598--74279632 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
74279588 TCTTTAAAGA
74279598 TAAAATATGCCTTTAT
1 TAAAATATGCCTTTAT
74279614 TAAAATATGCCTTTAT
1 TAAAATATGCCTTTAT
74279630 TAA
1 TAA
74279633 TAGCATGGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.43
Consensus pattern (16 bp):
TAAAATATGCCTTTAT
Found at i:74280479 original size:25 final size:27
Alignment explanation
Indices: 74280431--74280480 Score: 77
Period size: 25 Copynumber: 1.9 Consensus size: 27
74280421 CGCTATTATG
*
74280431 GGTTGAATGATCGATTATGCATAATAT
1 GGTTGAATGATCGATTATGAATAATAT
74280458 GGTTGAAT-AT-GATTATGAATAAT
1 GGTTGAATGATCGATTATGAATAAT
74280481 GCATGATGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 12 0.55
26 2 0.09
27 8 0.36
ACGTcount: A:0.36, C:0.04, G:0.22, T:0.38
Consensus pattern (27 bp):
GGTTGAATGATCGATTATGAATAATAT
Found at i:74280641 original size:48 final size:48
Alignment explanation
Indices: 74280556--74280927 Score: 464
Period size: 48 Copynumber: 7.8 Consensus size: 48
74280546 GACATTTAGG
* * * * * *
74280556 TGATATGTGTGCTAGTGTAAGACCATGTTTAGAACATGGCATCGGCAA
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* *
74280604 TG-TAATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCAT
1 TGAT-ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * *
74280652 TGATATGTGAGCTAGTGTAAGACCATGTCTCGGACATGGCATCGGTAT
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* *
74280700 TGATATGTA-CGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAT
1 TGATATG-AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * *
74280748 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGACATCGGCCA-
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CAT
* *
74280796 T-ATTATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCAT
1 TGA-TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * * *
74280844 TGAGACGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCAT
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* *
74280892 TGAGACGAGAGCTAGTGTAAGACCATGTCTGGGACA
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACA
74280928 CGGTGTCGTA
Statistics
Matches: 284, Mismatches: 32, Indels: 16
0.86 0.10 0.05
Matches are distributed among these distances:
47 4 0.01
48 276 0.97
49 4 0.01
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (48 bp):
TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
Found at i:74280720 original size:96 final size:97
Alignment explanation
Indices: 74280556--74280986 Score: 491
Period size: 96 Copynumber: 4.5 Consensus size: 97
74280546 GACATTTAGG
* * * *
74280556 TGATATGTGTGCTAGTGTAAGACCATGTTTAGAACATGGCATCGGCAATG-TAATGAGAGCCAGT
1 TGATATGTGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATAATGAGAGCCAGT
*
74280620 GTAAGACCATGTCTGGGACATGGCATTGGCAT
66 GTAAGACCATGTCTGGGACATGGCATCGGCAT
* * * *
74280652 TGATATGTGAGCTAGTGTAAGACCATGTCTCGGACATGGCATCGGTATTGAT-ATGTA-CGCTAG
1 TGATATGTGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATAATG-AGAGCCAG
*
74280715 TGTAAGACCATGTCTGGGACATGGCATCAGCAT
65 TGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * * *
74280748 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGACATCGGCCA-T-ATTATGAGAGCCAG
1 TGATATGTGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGG-CATTGATAATGAGAGCCAG
*
74280811 TGTAAGACCATGTCTAGGACATGGCATCGGCAT
65 TGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * * * * * *
74280844 TGAGACGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGA-GACGAGAGCTAGT
1 TGATATGTGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATAATGAGAGCCAGT
* ** *
74280908 GTAAGACCATGTCTGGGACACGGTGTC-GTACT
66 GTAAGACCATGTCTGGGACATGGCATCGGCA-T
** * * *
74280940 CAACATGTGAGCCAGTGTAAGACCATGT-TTGGATCATGGCATCGGCA
1 TGATATGTGAGCTAGTGTAAGACCATGTCTAGGA-CATGGCATCGGCA
74280987 ATTCACCCTC
Statistics
Matches: 285, Mismatches: 41, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
95 11 0.04
96 270 0.95
97 4 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (97 bp):
TGATATGTGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATAATGAGAGCCAGT
GTAAGACCATGTCTGGGACATGGCATCGGCAT
Found at i:74280952 original size:144 final size:141
Alignment explanation
Indices: 74280566--74280986 Score: 472
Period size: 144 Copynumber: 2.9 Consensus size: 141
74280556 TGATATGTGT
* * * * *
74280566 GCTAGTGTAAGACCATGTTTAGAACATGGCATCGGCAATGTAATGAGAGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTG-AATGAGAGCTAGTGTAAGACCATG
* ** * *
74280631 TCTGGGACATGGCATT-GGCATTGATATGTGAGCTAGTGTAAGACCATGTCTCGGACATGGCATC
65 TCTGGGACATGG--TTCGAC-TCAATATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATC
* * * *
74280695 GGTATTGATATGTAC
127 GGCATTGAGACGTAA
* * *
74280710 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGATATGTGTGCTAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGA-ATGAGAGCTAGTGTAAGACCATG
** * *
74280775 TCTGGGACATGACATCGGC-CATATTATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATC
65 TCTGGGACATG-GTTCGACTCA-A-TATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATC
74280839 GGCATTGAGACG-AGA
127 GGCATTGAGACGTA-A
*
74280854 GCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGAGACGAGAGCTAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGA-ATGAGAGCTAGTGTAAGACCATG
* * *
74280919 TCTGGGACACGGTGTCGTACTCAACATGTGAGCCAGTGTAAGACCATGT-TTGGATCATGGCATC
65 TCTGGGACATGGT-TCG-ACTCAATATGTGAGCCAGTGTAAGACCATGTCTAGGA-CATGGCATC
74280983 GGCA
127 GGCA
74280987 ATTCACCCTC
Statistics
Matches: 236, Mismatches: 31, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
143 8 0.03
144 224 0.95
145 2 0.01
146 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (141 bp):
GCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGAATGAGAGCTAGTGTAAGACCATGT
CTGGGACATGGTTCGACTCAATATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCA
TTGAGACGTAA
Found at i:74286202 original size:48 final size:48
Alignment explanation
Indices: 74286131--74286460 Score: 270
Period size: 48 Copynumber: 6.9 Consensus size: 48
74286121 CATTTGGGTG
* *
74286131 ATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGTATTA
1 ATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTA
* * * * * *
74286179 ATATGTGCGCCAGTGTAAGACCATGTTTCAGG-CATGGCATTGACATTG
1 ATATGTGAGCTAGTGTAAGACCATGTTT-GGGACATGGCATCGGCATTA
* * * * * * *** * *
74286227 ATATGTGCGCCAATGTAAGGCCATGTCTGGGATATGGCATTATCACTG
1 ATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTA
* * * *
74286275 ATATGTGTGCTACTGTAAGACCTTGTTTGGGACATGGCATCGGCCA-CA
1 ATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGG-CATTA
* * * * *
74286323 TTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTG
1 ATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTA
* * * * * * * *
74286371 AGATGAGAGCTACTGTAAGAACATGTCTGGGACATGGCATCGTCCTCA
1 ATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTA
* *
74286419 ACATGTGAGCCAGTGTAAGACCATGTTT-GGATCATGGCATCG
1 ATATGTGAGCTAGTGTAAGACCATGTTTGGGA-CATGGCATCG
74286461 ACAATTCACC
Statistics
Matches: 226, Mismatches: 51, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
47 7 0.03
48 215 0.95
49 4 0.02
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (48 bp):
ATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTA
Found at i:74286389 original size:144 final size:144
Alignment explanation
Indices: 74286129--74286460 Score: 350
Period size: 144 Copynumber: 2.3 Consensus size: 144
74286119 GACATTTGGG
* * * * *
74286129 TGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGTATTAATATGTGCGCCAGTG
1 TGATATGTGTGCTACTGTAAGACCATGTTTGGGACATGGCATCGGCATCAATATGAGAGCCAGTG
* * * * * **
74286194 TAAGACCATGTTTCAGGCATGGCATTGACATTGATATGTGCGCCAATGTAAGGCCATGTCTGGGA
66 TAAGACCATGTCTCAGGCATGGCATAGACATTGAGATGAGAGCCAATGTAAGAACATGTCTGGGA
*
74286259 TATGGCATTATCAC
131 CATGGCATTATCAC
* * *
74286273 TGATATGTGTGCTACTGTAAGACCTTGTTTGGGACATGGCATCGGCCA-CATTATGAGAGCTAGT
1 TGATATGTGTGCTACTGTAAGACCATGTTTGGGACATGGCATCGG-CATCAATATGAGAGCCAGT
* * *
74286337 GTAAGACCATGTCT-GGGACATGGCATCAG-CATTGAGATGAGAGCTACTGTAAGAACATGTCTG
65 GTAAGACCATGTCTCAGG-CATGGCAT-AGACATTGAGATGAGAGCCAATGTAAGAACATGTCTG
**
74286400 GGACATGGCATCGTC-C
128 GGACATGGCATTATCAC
* * * * *
74286416 TCAACATGTGAGCCAGTGTAAGACCATGTTT-GGATCATGGCATCG
1 T-GATATGTGTGCTACTGTAAGACCATGTTTGGGA-CATGGCATCG
74286461 ACAATTCACC
Statistics
Matches: 156, Mismatches: 27, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
143 7 0.04
144 147 0.94
145 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (144 bp):
TGATATGTGTGCTACTGTAAGACCATGTTTGGGACATGGCATCGGCATCAATATGAGAGCCAGTG
TAAGACCATGTCTCAGGCATGGCATAGACATTGAGATGAGAGCCAATGTAAGAACATGTCTGGGA
CATGGCATTATCAC
Found at i:74291673 original size:28 final size:29
Alignment explanation
Indices: 74291608--74291704 Score: 121
Period size: 28 Copynumber: 3.4 Consensus size: 29
74291598 CATGAGATTG
* *
74291608 GCACTAAGTGTGCG-GGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGGTTC-GATTATATA
74291637 GCACTAAGTGTGCGAGGTT-GATTATATA
1 GCACTAAGTGTGCGAGGTTCGATTATATA
*
74291665 GCACTAAGTGTGCGA-GTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGGTTCGATTATAT-A
74291693 GCACTAAGTGTG
1 GCACTAAGTGTG
74291705 TGGGCTTATT
Statistics
Matches: 62, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
27 4 0.06
28 40 0.65
29 14 0.23
30 4 0.06
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGGTTCGATTATATA
Found at i:74295225 original size:15 final size:15
Alignment explanation
Indices: 74295205--74295273 Score: 102
Period size: 15 Copynumber: 4.6 Consensus size: 15
74295195 ATATTGTATT
*
74295205 TTGGATTTCTATATC
1 TTGGATTTCTTTATC
74295220 TTGGATTTCTTTATC
1 TTGGATTTCTTTATC
*
74295235 TTGGATTTCTTTGTC
1 TTGGATTTCTTTATC
*
74295250 TTGGACTTCTTTATC
1 TTGGATTTCTTTATC
*
74295265 TTGGTTTTC
1 TTGGATTTC
74295274 ATGTCATCTC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 48 1.00
ACGTcount: A:0.12, C:0.14, G:0.16, T:0.58
Consensus pattern (15 bp):
TTGGATTTCTTTATC
Found at i:74298099 original size:44 final size:44
Alignment explanation
Indices: 74298036--74298175 Score: 154
Period size: 52 Copynumber: 3.0 Consensus size: 44
74298026 TATGTATGAG
* * *
74298036 GCATCCGAACTCGTTGAGTTGGTCCGATTTCATTATGGATGCGA
1 GCATCCGAGCTTGTTGAGTTGGTCCGAGTTCATTATGGATGCGA
* *
74298080 GCATCCGAGCTTGTTGAGTTGGTCCGAGTTCATAATGGATTCGACACATGT
1 GCATCCGAGCTTGTTGAGTTGGTCCGAGTTCATTATGGA-T-G---C--GA
*
74298131 GACATCCGAGTTTGTTGAGTTGGTCCGAGTTCATTATGGATGCGA
1 G-CATCCGAGCTTGTTGAGTTGGTCCGAGTTCATTATGGATGCGA
74298176 TACATGTAAT
Statistics
Matches: 80, Mismatches: 8, Indels: 15
0.78 0.08 0.15
Matches are distributed among these distances:
44 35 0.44
45 2 0.03
46 1 0.01
47 1 0.01
49 1 0.01
50 1 0.01
51 3 0.04
52 36 0.45
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.32
Consensus pattern (44 bp):
GCATCCGAGCTTGTTGAGTTGGTCCGAGTTCATTATGGATGCGA
Found at i:74298146 original size:52 final size:52
Alignment explanation
Indices: 74298081--74298182 Score: 168
Period size: 52 Copynumber: 2.0 Consensus size: 52
74298071 TGGATGCGAG
*
74298081 CATCCGAGCTTGTTGAGTTGGTCCGAGTTCATAATGGATTCGACACATGTGA
1 CATCCGAGCTTGTTGAGTTGGTCCGAGTTCATAATGGATGCGACACATGTGA
* * *
74298133 CATCCGAGTTTGTTGAGTTGGTCCGAGTTCATTATGGATGCGATACATGT
1 CATCCGAGCTTGTTGAGTTGGTCCGAGTTCATAATGGATGCGACACATGT
74298183 AATTGGGTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (52 bp):
CATCCGAGCTTGTTGAGTTGGTCCGAGTTCATAATGGATGCGACACATGTGA
Found at i:74305847 original size:41 final size:41
Alignment explanation
Indices: 74305788--74305958 Score: 189
Period size: 41 Copynumber: 4.2 Consensus size: 41
74305778 AGAATAATGA
* * * *
74305788 TGAATTGCACAAACGTGCCCCTATTTGTATTTCAGTACCCC
1 TGAATTGCACATATGTGCCCCTATTTGTACTTCGGTACCCC
* * * **
74305829 TGAATTACACATATGTGCCCCTATTTGCACTTCGATACTAC
1 TGAATTGCACATATGTGCCCCTATTTGTACTTCGGTACCCC
* * *
74305870 TGAATCGCACATATGTGCCCTTGTTTGTACTTCGGTACCCC
1 TGAATTGCACATATGTGCCCCTATTTGTACTTCGGTACCCC
* * * * *
74305911 TAAATTGCATAGATGTGCTCCTGTTTGTACTTCGGTACCCC
1 TGAATTGCACATATGTGCCCCTATTTGTACTTCGGTACCCC
74305952 TGAATTG
1 TGAATTG
74305959 TAATATCCCG
Statistics
Matches: 106, Mismatches: 24, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 106 1.00
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (41 bp):
TGAATTGCACATATGTGCCCCTATTTGTACTTCGGTACCCC
Found at i:74310951 original size:49 final size:49
Alignment explanation
Indices: 74310855--74311118 Score: 457
Period size: 49 Copynumber: 5.5 Consensus size: 49
74310845 TTAGGATTTT
74310855 ATGTGATGAATGTGAAAGTGTATG--TATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
74310902 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
74310951 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
74311000 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
* *
74311049 ATGTGATGAATGTGAAA--GTATATATATATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
*
74311096 ATGTGATGGAA-GTGGAAGTGTAT
1 ATGTGAT-GAATGTGAAAGTGTAT
74311119 AACTGTGATA
Statistics
Matches: 209, Mismatches: 3, Indels: 8
0.95 0.01 0.04
Matches are distributed among these distances:
47 64 0.31
48 3 0.01
49 142 0.68
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
Found at i:74310981 original size:27 final size:27
Alignment explanation
Indices: 74310951--74311033 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 27
74310941 CGAATGGCCA
74310951 ATGTGATGAATGTGAAAGTGTATGTAT
1 ATGTGATGAATGTGAAAGTGTATGTAT
* * *
74310978 ATGTGAT-AAGGCCG-AA-TG---GCCA-
1 ATGTGATGAATG-TGAAAGTGTATG-TAT
74311000 ATGTGATGAATGTGAAAGTGTATGTAT
1 ATGTGATGAATGTGAAAGTGTATGTAT
74311027 ATGTGAT
1 ATGTGAT
74311034 AAGGCCGAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 18
0.63 0.09 0.28
Matches are distributed among these distances:
22 9 0.22
23 6 0.15
24 2 0.05
25 2 0.05
26 6 0.15
27 16 0.39
ACGTcount: A:0.33, C:0.05, G:0.30, T:0.33
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTATGTAT
Found at i:74312750 original size:40 final size:40
Alignment explanation
Indices: 74312696--74312889 Score: 316
Period size: 40 Copynumber: 4.8 Consensus size: 40
74312686 ATTGAGAGTT
*
74312696 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTA
* * *
74312736 TTATATCCGGGCTAAGTCCTGAAAAGCATTCGTGCTGGTA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTA
*
74312776 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTA
* *
74312816 TTATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTA
*
74312856 ATATATCTGGGCTAAGTCCCGAAGAGCATTCGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTG
74312890 GTAAGTTGGT
Statistics
Matches: 140, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTA
Found at i:74312796 original size:80 final size:80
Alignment explanation
Indices: 74312696--74312889 Score: 352
Period size: 80 Copynumber: 2.4 Consensus size: 80
74312686 ATTGAGAGTT
*
74312696 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCTGAAAA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAAA
74312761 GCATTCGTGCTGGTA
66 GCATTCGTGCTGGTA
* *
74312776 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAAGTCCCGAAGA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAAA
74312841 GCATTCGTGCTGGTA
66 GCATTCGTGCTGGTA
*
74312856 ATATATCTGGGCTAAGTCCCGAAGAGCATTCGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTG
74312890 GTAAGTTGGT
Statistics
Matches: 110, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 110 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (80 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAAA
GCATTCGTGCTGGTA
Found at i:74313563 original size:68 final size:66
Alignment explanation
Indices: 74313491--74313662 Score: 179
Period size: 67 Copynumber: 2.6 Consensus size: 66
74313481 CATCATGTGT
* * * *
74313491 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
74313554 TGTAG
62 TGTAG
* * *
74313559 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
74313624 AG
65 AG
* * * *
74313626 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
74313663 GGTGGTACTG
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
64 24 0.26
65 3 0.03
66 18 0.20
67 33 0.36
68 13 0.14
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:74314720 original size:15 final size:16
Alignment explanation
Indices: 74314702--74314731 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74314692 ATGGAAACTA
74314702 TGGTAT-ATGAAATAT
1 TGGTATAATGAAATAT
74314717 TGGTATAATGAAATA
1 TGGTATAATGAAATA
74314732 AATGATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (16 bp):
TGGTATAATGAAATAT
Found at i:74317604 original size:30 final size:31
Alignment explanation
Indices: 74317487--74317606 Score: 154
Period size: 31 Copynumber: 3.7 Consensus size: 31
74317477 TTAGTCTTGA
*
74317487 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
74317517 CATATCACTAGGCCTGGGCCGAAGCCTTTTCATAAAT
1 CATAT--C-A---CTGGGCCGAAGCCTTTTCATAAAT
74317554 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
74317585 CATATCACT-GGCTGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
74317607 ATTGTAAGCG
Statistics
Matches: 81, Mismatches: 2, Indels: 14
0.84 0.02 0.14
Matches are distributed among these distances:
30 17 0.21
31 33 0.41
34 2 0.02
35 1 0.01
37 28 0.35
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:74317677 original size:42 final size:42
Alignment explanation
Indices: 74317630--74317721 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
74317620 TGGCCCTTAG
*
74317630 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
74317672 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
74317714 GCCCATTT
1 GCCCATTT
74317722 GGGGAGACTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:74317938 original size:25 final size:25
Alignment explanation
Indices: 74317869--74317938 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
74317859 CTCTTTTAAT
*
74317869 AACTGGGGCAAAGCCCTTTCCGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
74317894 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
74317919 AACTGGGGCAGAGCCATTTT
1 AACTGGGGCAAAGCCCTTTT
74317939 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:74318814 original size:26 final size:26
Alignment explanation
Indices: 74318748--74318849 Score: 89
Period size: 27 Copynumber: 3.8 Consensus size: 26
74318738 GGGCATATTC
74318748 GTCATTTTACCATACAAGGGTATTACG
1 GTCATTTTACC-TACAAGGGTATTACG
* *
74318775 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTACAAGGG-TATTACG
* * ***
74318802 GTCTTTTTACCTATTAAGGGTATTTTA
1 GTCATTTTACCTA-CAAGGGTATTACG
74318829 GTCATTTTATCCTACAAGGGT
1 GTCATTTTA-CCTACAAGGGT
74318850 GTTTTGGTAA
Statistics
Matches: 59, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
26 5 0.08
27 47 0.80
28 7 0.12
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.38
Consensus pattern (26 bp):
GTCATTTTACCTACAAGGGTATTACG
Found at i:74318904 original size:26 final size:26
Alignment explanation
Indices: 74318866--74318915 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
74318856 GTAAATCTAC
*
74318866 AAACCAAGGGTATTTC-AGTAATTTGT
1 AAACCAAGAGTATTTCTA-TAATTTGT
*
74318892 AAACCAATAGTATTTCTATAATTT
1 AAACCAAGAGTATTTCTATAATTT
74318916 TTAGAAAGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (26 bp):
AAACCAAGAGTATTTCTATAATTTGT
Found at i:74318960 original size:55 final size:54
Alignment explanation
Indices: 74318863--74318997 Score: 141
Period size: 55 Copynumber: 2.5 Consensus size: 54
74318853 TTGGTAAATC
* *
74318863 TACAAACCAAGGGTATTTCAGTAA-TTTGTAAACCAATAGTATTTCT-ATAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAGAGTATTT-TGATAA-TTT
* * * * *
74318917 TAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATC-AGGGTATTTTGGTAATTT
1 TACAAA-TCAAGGGTATTTCAGTAATTTTGTAAACCAAGAGTATTTTGATAATTT
* *
74318971 TACAAATTAAGGGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
74318998 CACAAACTAG
Statistics
Matches: 68, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
53 19 0.28
54 14 0.21
55 26 0.38
56 9 0.13
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.41
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAGAGTATTTTGATAATTT
Found at i:74318967 original size:26 final size:26
Alignment explanation
Indices: 74318927--74319047 Score: 115
Period size: 26 Copynumber: 4.6 Consensus size: 26
74318917 TAGAAAGTCA
**
74318927 AGGGTATTTCT-GTAATTTTGTAAATC
1 AGGGTATTT-TGGTAATTTTACAAATC
*
74318953 AGGGTATTTTGGTAATTTTACAAATTA
1 AGGGTATTTTGGTAATTTTACAAA-TC
* *
74318980 AGGGTATTTCGGTAATTTCACAAA-C
1 AGGGTATTTTGGTAATTTTACAAATC
74319005 TAGTGGTATTTTGGTAA-TTTACAAA-C
1 -AG-GGTATTTTGGTAATTTTACAAATC
74319031 TAGGGGTATTTTGGTAA
1 -A-GGGTATTTTGGTAA
74319048 CTCTACCCTA
Statistics
Matches: 82, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
25 1 0.01
26 45 0.55
27 36 0.44
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.41
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAATC
Found at i:74318993 original size:27 final size:27
Alignment explanation
Indices: 74318816--74319047 Score: 138
Period size: 27 Copynumber: 8.6 Consensus size: 27
74318806 TTTTACCTAT
* * **
74318816 TAAGGGTATTTTAGTCATTTTATCCTAC
1 TAAGGGTATTTTGGTAATTTTA-CAAAC
* * *
74318844 -AAGGGTGTTTTGGTAAATCTACAAAC
1 TAAGGGTATTTTGGTAATTTTACAAAC
* **
74318870 CAAGGGTATTTCAGTAATTTGT--AAAC
1 TAAGGGTATTTTGGTAATTT-TACAAAC
* ** * * *
74318896 CAATAGTATTTCT-ATAATTTTTAGAAAG
1 TAAGGGTATTT-TGGTAA-TTTTACAAAC
**
74318924 TCAAGGGTATTTCT-GTAATTTTGTAAA-
1 T-AAGGGTATTT-TGGTAATTTTACAAAC
* *
74318951 TCAGGGTATTTTGGTAATTTTACAAAT
1 TAAGGGTATTTTGGTAATTTTACAAAC
* *
74318978 TAAGGGTATTTCGGTAATTTCACAAAC
1 TAAGGGTATTTTGGTAATTTTACAAAC
74319005 T-AGTGGTATTTTGGTAA-TTTACAAAC
1 TAAG-GGTATTTTGGTAATTTTACAAAC
*
74319031 TAGGGGTATTTTGGTAA
1 TAAGGGTATTTTGGTAA
74319048 CTCTACCCTA
Statistics
Matches: 160, Mismatches: 33, Indels: 24
0.74 0.15 0.11
Matches are distributed among these distances:
25 1 0.01
26 64 0.40
27 71 0.44
28 11 0.07
29 13 0.08
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
TAAGGGTATTTTGGTAATTTTACAAAC
Found at i:74319089 original size:27 final size:27
Alignment explanation
Indices: 74318954--74319115 Score: 93
Period size: 27 Copynumber: 6.1 Consensus size: 27
74318944 TTGTAAATCA
* * * *
74318954 GGGTATTTTGGTAATTTTACAAAT-TAA
1 GGGTATTTCGGTAATTTCAC-AATCGAG
* *
74318981 GGGTATTTCGGTAATTTCACAAACTAG
1 GGGTATTTCGGTAATTTCACAATCGAG
* * * *
74319008 TGGTATTTTGGTAATTT-ACAAACTAG
1 GGGTATTTCGGTAATTTCACAATCGAG
* * * *
74319034 GGGTATTTTGGTAACTCTACCCTAT--AG
1 GGGTATTTCGGTAA-T-TTCACAATCGAG
*
74319061 GGGTATTTCAGTAATTTCACAATCGA-
1 GGGTATTTCGGTAATTTCACAATCGAG
**
74319087 GGGTAAAAT-GGTAATTTCACAATCGAG
1 GGGT-ATTTCGGTAATTTCACAATCGAG
74319114 GG
1 GG
74319116 TAAAACAATA
Statistics
Matches: 108, Mismatches: 19, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
25 5 0.05
26 45 0.42
27 55 0.51
28 1 0.01
29 2 0.02
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTCACAATCGAG
Found at i:74319127 original size:26 final size:26
Alignment explanation
Indices: 74319069--74319155 Score: 104
Period size: 26 Copynumber: 3.3 Consensus size: 26
74319059 AGGGGTATTT
74319069 CAGTAATTTCACAATCGAGGGTAAAA
1 CAGTAATTTCACAATCGAGGGTAAAA
**
74319095 TGGTAATTTCACAATCGAGGGTAAAA
1 CAGTAATTTCACAATCGAGGGTAAAA
* * *
74319121 CAATAATTCTGTA-AATCAAGGGTAAAA
1 CAGTAATT-T-CACAATCGAGGGTAAAA
74319148 CAGTAATT
1 CAGTAATT
74319156 CTATAAATCG
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
26 29 0.57
27 21 0.41
28 1 0.02
ACGTcount: A:0.43, C:0.13, G:0.18, T:0.26
Consensus pattern (26 bp):
CAGTAATTTCACAATCGAGGGTAAAA
Found at i:74319145 original size:27 final size:27
Alignment explanation
Indices: 74319107--74319171 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
74319097 GTAATTTCAC
*
74319107 AATCGAGGGTAAAACAATAATTCTGTA
1 AATCGAGGGTAAAACAATAATTCTATA
* *
74319134 AATCAAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAATAATTCTATA
74319161 AATCGAGGGTA
1 AATCGAGGGTA
74319172 CTTTGGCAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.45, C:0.11, G:0.20, T:0.25
Consensus pattern (27 bp):
AATCGAGGGTAAAACAATAATTCTATA
Found at i:74342342 original size:40 final size:40
Alignment explanation
Indices: 74342298--74342520 Score: 299
Period size: 40 Copynumber: 5.6 Consensus size: 40
74342288 AAGTGAATAT
* * * * **
74342298 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAA
74342338 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
74342378 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
*
74342418 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * **
74342458 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* *
74342497 A-CCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
74342521 TGAACGAGGA
Statistics
Matches: 169, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
38 22 0.13
39 12 0.07
40 135 0.80
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:74342396 original size:80 final size:80
Alignment explanation
Indices: 74342259--74342520 Score: 309
Period size: 80 Copynumber: 3.3 Consensus size: 80
74342249 TTGAATGCTG
* * * * *
74342259 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCC
*
74342321 TTTGTGCGAGATACTAAA
63 TTTGTGCGAGTTACTAAA
* * *
74342339 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
**
74342404 GTGCGAGTTGTTAAA
66 GTGCGAGTTACTAAA
* * * *
74342419 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
74342483 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
*
74342498 -CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
74342521 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
78 21 0.13
79 14 0.09
80 115 0.73
81 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:74366008 original size:46 final size:46
Alignment explanation
Indices: 74365958--74366130 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
74365948 TGGTTGAGCA
*
74365958 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
74366004 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
74366051 TCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
74366097 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
74366131 AGGGCGGGTT
Statistics
Matches: 105, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
45 7 0.07
46 56 0.53
47 27 0.26
48 3 0.03
50 6 0.06
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:74366114 original size:93 final size:93
Alignment explanation
Indices: 74365955--74366125 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
74365945 GGATGGTTGA
* * * *
74365955 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGTCCCAACTCGTTGAGT
74366020 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
74366048 GCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGTCCCAA-CTCGTTGAG
74366112 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
74366126 ACTTAAGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 4 0.05
93 69 0.95
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGTCCCAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:74371869 original size:46 final size:46
Alignment explanation
Indices: 74371819--74371991 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
74371809 TGGTTGAGCA
74371819 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
74371865 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* *
74371910 CATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
74371958 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
74371992 AGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 60 0.56
47 28 0.26
48 4 0.04
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:74371975 original size:93 final size:93
Alignment explanation
Indices: 74371816--74371986 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
74371806 GGATGGTTGA
* *
74371816 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
74371881 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
74371909 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
74371974 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
74371987 ACTTAAGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:74373066 original size:40 final size:40
Alignment explanation
Indices: 74373011--74373228 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
74373001 CGGATGATAA
* *
74373011 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
74373051 CCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
74373091 CCGGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
74373131 CCGGGCTAGGTCCCGAAGGTATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
74373171 CCGGGCTAAGTCCCGATGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
74373211 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
74373229 TACTTGGTTT
Statistics
Matches: 160, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 16 0.10
40 143 0.89
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:74381327 original size:40 final size:40
Alignment explanation
Indices: 74381269--74381486 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
74381259 CGGATGATAA
* *
74381269 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
74381309 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
74381349 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
74381389 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
74381429 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
74381469 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
74381487 TACTTGGTTT
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 17 0.10
40 146 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:74385275 original size:39 final size:40
Alignment explanation
Indices: 74385197--74385386 Score: 168
Period size: 39 Copynumber: 5.0 Consensus size: 40
74385187 CAAATCCAAT
* * *
74385197 CACCACCA-CAAAGCATGCGTGACTTTAAGCCCGGATATAA
1 CACCAGCACCAAAGCCTGCGGGACTTT-AGCCCGGATATAA
* *
74385237 TACCAGC-CCAAAGCCTGCAGGACTTTAGCCCGGATATAA
1 CACCAGCACCAAAGCCTGCGGGACTTTAGCCCGGATATAA
* * *
74385276 CACCAGCACGAATGCCT------C-TTAGCCCGGATATAG
1 CACCAGCACCAAAGCCTGCGGGACTTTAGCCCGGATATAA
* * *
74385309 CACCAGCACGAATGCCTTCGGGAC-TTAGCCCGGATATAA
1 CACCAGCACCAAAGCCTGCGGGACTTTAGCCCGGATATAA
* * *
74385348 CACCAGCACGAATGCCTTCGGGAC-TTAGCCCGGATATAA
1 CACCAGCACCAAAGCCTGCGGGACTTTAGCCCGGATATAA
74385387 TTCTCCATTA
Statistics
Matches: 132, Mismatches: 10, Indels: 17
0.83 0.06 0.11
Matches are distributed among these distances:
33 31 0.23
34 1 0.01
39 73 0.55
40 27 0.20
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.18
Consensus pattern (40 bp):
CACCAGCACCAAAGCCTGCGGGACTTTAGCCCGGATATAA
Found at i:74385341 original size:72 final size:72
Alignment explanation
Indices: 74385224--74385364 Score: 212
Period size: 72 Copynumber: 2.0 Consensus size: 72
74385214 CGTGACTTTA
*
74385224 AGCCCGGATATAATACCAGCCCAAAGCCTGCAGGACTTTAGCCCGGATATAACACCAGCACGAAT
1 AGCCCGGATATAACACCAGCCCAAAGCCTGCAGGACTTTAGCCCGGATATAACACCAGCACGAAT
74385289 GCCTCTT
66 GCCTCTT
* * * * *
74385296 AGCCCGGATATAGCACCAGCACGAATGCCTTCGGGAC-TTAGCCCGGATATAACACCAGCACGAA
1 AGCCCGGATATAACACCAGC-CCAAAGCCTGCAGGACTTTAGCCCGGATATAACACCAGCACGAA
74385360 TGCCT
65 TGCCT
74385365 TCGGGACTTA
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
72 50 0.81
73 12 0.19
ACGTcount: A:0.30, C:0.32, G:0.21, T:0.17
Consensus pattern (72 bp):
AGCCCGGATATAACACCAGCCCAAAGCCTGCAGGACTTTAGCCCGGATATAACACCAGCACGAAT
GCCTCTT
Found at i:74391748 original size:39 final size:39
Alignment explanation
Indices: 74391663--74391879 Score: 312
Period size: 39 Copynumber: 5.5 Consensus size: 39
74391653 ACAAAGCATG
* * * *
74391663 CGGGACTTTAAGCCCGAATATAATACCAGCA-GAAAGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
*
74391703 CGGGACTTTAGCCCGGATATAACACCAACACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
74391743 C-GGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
74391781 CGGGACTTAGCCCGAATATAATACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
74391820 CAGGACCTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
74391859 CGGGACTTAGCCCGGATATAA
1 CGGGACTTAGCCCGGATATAA
74391880 TTCTCCATTA
Statistics
Matches: 161, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
38 33 0.20
39 111 0.69
40 17 0.11
ACGTcount: A:0.31, C:0.29, G:0.22, T:0.18
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:74397212 original size:9 final size:9
Alignment explanation
Indices: 74397198--74397224 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
74397188 ATATGGTGAG
74397198 ATTTTGTGT
1 ATTTTGTGT
74397207 ATTTTGTGT
1 ATTTTGTGT
74397216 ATTTTGTGT
1 ATTTTGTGT
74397225 TTTATGCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.00, G:0.22, T:0.67
Consensus pattern (9 bp):
ATTTTGTGT
Found at i:74397951 original size:35 final size:35
Alignment explanation
Indices: 74397908--74398031 Score: 153
Period size: 35 Copynumber: 3.5 Consensus size: 35
74397898 CATAGGTAAG
74397908 TACATGTGAGCTTATATTGAACTTGTATATTCGGC
1 TACATGTGAGCTTATATTGAACTTGTATATTCGGC
* * * **
74397943 TGCATGTGAGGTTATATTGAACTTG-AGTATTTGAT
1 TACATGTGAGCTTATATTGAACTTGTA-TATTCGGC
*
74397978 TACATGTGAGCTTATATTGAACTTGTATATTCGGT
1 TACATGTGAGCTTATATTGAACTTGTATATTCGGC
*
74398013 TATATGTGAAG-TTATATTG
1 TACATGTG-AGCTTATATTG
74398032 CATGTACATA
Statistics
Matches: 76, Mismatches: 10, Indels: 6
0.83 0.11 0.07
Matches are distributed among these distances:
34 1 0.01
35 72 0.95
36 3 0.04
ACGTcount: A:0.27, C:0.09, G:0.22, T:0.43
Consensus pattern (35 bp):
TACATGTGAGCTTATATTGAACTTGTATATTCGGC
Found at i:74398269 original size:37 final size:37
Alignment explanation
Indices: 74398228--74398301 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
74398218 ACTCTGTGTG
74398228 TGTTTTTGTTACTCTATTTTATATATTTTGGTGGTAA
1 TGTTTTTGTTACTCTATTTTATATATTTTGGTGGTAA
*
74398265 TGTTTTTGTTACTCTGTTTTATATATTTTGGTGGTAA
1 TGTTTTTGTTACTCTATTTTATATATTTTGGTGGTAA
74398302 GTTACGAGCT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.18, C:0.05, G:0.18, T:0.59
Consensus pattern (37 bp):
TGTTTTTGTTACTCTATTTTATATATTTTGGTGGTAA
Found at i:74417599 original size:39 final size:40
Alignment explanation
Indices: 74417504--74417726 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
74417494 TTGAATGATG
*
74417504 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
74417542 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
74417583 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
74417622 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
74417661 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
74417700 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
74417727 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:74417690 original size:79 final size:81
Alignment explanation
Indices: 74417504--74417726 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
74417494 TTGAATGATG
* * *
74417504 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
74417566 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
74417583 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
74417644 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
74417661 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
74417725 TG
66 TG
74417727 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:74417748 original size:79 final size:79
Alignment explanation
Indices: 74417504--74417759 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
74417494 TTGAATGATG
* * * *
74417504 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
74417565 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
74417583 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
74417647 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
74417661 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
74417724 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
74417741 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
74417760 TACGTGATTT
Statistics
Matches: 153, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 69 0.45
80 36 0.24
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:74425614 original size:39 final size:39
Alignment explanation
Indices: 74425462--74425681 Score: 243
Period size: 39 Copynumber: 5.6 Consensus size: 39
74425452 TTGAATGATG
* *
74425462 TCCGGGCTAAGTCCGAAGGC--TTGTGCTAAGTGAC-AAT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
74425499 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAT
*
74425540 TCCGGGCTAAG-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT
* * * *
74425578 TCCGGGCTAAGCCCGAAGGTATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT
* *
74425617 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-AT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT
* *
74425656 AACCGGGCTATGTCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCGAAGGCATTTG
74425682 AACGAGGAGC
Statistics
Matches: 157, Mismatches: 18, Indels: 13
0.84 0.10 0.07
Matches are distributed among these distances:
38 48 0.31
39 56 0.36
40 44 0.28
41 9 0.06
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:74425662 original size:79 final size:78
Alignment explanation
Indices: 74425462--74425681 Score: 252
Period size: 79 Copynumber: 2.8 Consensus size: 78
74425452 TTGAATGATG
* * * *
74425462 TCCGGGCTAAGTCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAA-TTACTATATCCGGGCTAAG-TCCGAAGGCATTT
*
74425525 GTGCGAGATACTAAT
64 GTGCGAGATACTAAA
* *
74425540 TCCGGGCTAAG-CCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAGCCCGAAGGTATTT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGA-ATTACTATA-TCCGGGCTAAGTCCGAAGGCATTT
* *
74425602 GTGTGAGTTACTAAA
64 GTGCGAGATACTAAA
* * *
74425617 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAATTACTATATCCGGGCTAAGTCCGAAGGCATTTG
74425682 AACGAGGAGC
Statistics
Matches: 120, Mismatches: 14, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
77 42 0.35
78 25 0.21
79 51 0.43
80 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (78 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAATTACTATATCCGGGCTAAGTCCGAAGGCATTTGT
GCGAGATACTAAA
Found at i:74425699 original size:79 final size:78
Alignment explanation
Indices: 74425551--74425714 Score: 172
Period size: 79 Copynumber: 2.1 Consensus size: 78
74425541 CCGGGCTAAG
* * *** *
74425551 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGTATTTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
74425616 ATCCGGGTTAAGTC
66 ATCC-GGTTAAATC
* *
74425630 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGA-C
* *
74425692 TATATCCGGTTAAATT
63 TAAATCCGGTTAAATC
74425708 CCGAAGG
1 CCGAAGG
74425715 TACGTGATTT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
78 18 0.25
79 53 0.75
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGTTAAATC
Found at i:74430779 original size:23 final size:22
Alignment explanation
Indices: 74430737--74430780 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
74430727 TAGATAAATA
*
74430737 AAAGAAAACAGAAATGAAATCG
1 AAAGAAAACAGAAATCAAATCG
74430759 AAAGAAAA-ATGAGAATCAAATC
1 AAAGAAAACA-GA-AATCAAATC
74430781 ACCTTGTGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 1 0.05
22 10 0.53
23 8 0.42
ACGTcount: A:0.64, C:0.09, G:0.16, T:0.11
Consensus pattern (22 bp):
AAAGAAAACAGAAATCAAATCG
Found at i:74439781 original size:18 final size:18
Alignment explanation
Indices: 74439758--74439796 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
74439748 TTAAATAACT
74439758 TAAAATGAACTTTAAAAA
1 TAAAATGAACTTTAAAAA
* *
74439776 TAAAATTAAGTTTAAAAA
1 TAAAATGAACTTTAAAAA
74439794 TAA
1 TAA
74439797 CTAAGGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.31
Consensus pattern (18 bp):
TAAAATGAACTTTAAAAA
Found at i:74444770 original size:48 final size:48
Alignment explanation
Indices: 74444681--74445084 Score: 209
Period size: 46 Copynumber: 8.5 Consensus size: 48
74444671 TTCGTGTACT
* * *
74444681 AGTGTAAGA-CATGTCTGAGACAT-GCATCGGCCA-C-ATTATGAGAGAC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACATCGA-GATGAGAGAC
* * * * *
74444727 TGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGATGAGCG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGATGAGAGAC
* * ** * *
74444774 AAGTGTAAG-GCATGTTTGGGACAT-GCATCGACCCCAAGATGTA-AGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGATG-AGAGAC
* *
74444821 AGTGTAAGA-CATGTCT-GGAGCAT-GCATC-AGCAAT-GAGAT--GTGTC
1 AGTGTAAGACCATGTCTGGGA-CATGGCATCGA-C-ATCGAGATGAGAGAC
* * * *
74444865 AGTGTAAGACCATGCCTAGGACATGGCATCAACA-CGA-ATAGAGGTGAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGAT-GA-GAGAC
* * * *
74444913 AGTGTAAGACCATTTCTGGGACATGGCATCGACATGGATATGTGAGAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGATGAGAGA-C
* * * * * ** * *
74444962 TAGTGTAAGACCACGTCTGGGACATGGCGTTGTCCTCGATTTCGATAGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGAT-GAGAGAC
** * *
74445012 AGTGTAAGACCATGTCTAAGACATGGCATCGAC-T--TGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGAT-GA-GAGAC
74445059 AGTGTAAGACCATGTCTGGGACATGG
1 AGTGTAAGACCATGTCTGGGACATGG
74445085 AATCAGCTCT
Statistics
Matches: 276, Mismatches: 55, Indels: 53
0.72 0.14 0.14
Matches are distributed among these distances:
44 13 0.05
45 16 0.06
46 60 0.22
47 60 0.22
48 56 0.20
49 32 0.12
50 36 0.13
51 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGATGAGAGAC
Found at i:74448217 original size:85 final size:85
Alignment explanation
Indices: 74448074--74448245 Score: 344
Period size: 85 Copynumber: 2.0 Consensus size: 85
74448064 TTTCTTATAA
74448074 TGATTAGAGGTCATTGTTTTCCAACTAACCTCATGCTACTACCGTTTGATGAATTTGATCTAATT
1 TGATTAGAGGTCATTGTTTTCCAACTAACCTCATGCTACTACCGTTTGATGAATTTGATCTAATT
74448139 CTTGGCATGGATTTGTTGAC
66 CTTGGCATGGATTTGTTGAC
74448159 TGATTAGAGGTCATTGTTTTCCAACTAACCTCATGCTACTACCGTTTGATGAATTTGATCTAATT
1 TGATTAGAGGTCATTGTTTTCCAACTAACCTCATGCTACTACCGTTTGATGAATTTGATCTAATT
74448224 CTTGGCATGGATTTGTTGAC
66 CTTGGCATGGATTTGTTGAC
74448244 TG
1 TG
74448246 CTCATAATGA
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 87 1.00
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.40
Consensus pattern (85 bp):
TGATTAGAGGTCATTGTTTTCCAACTAACCTCATGCTACTACCGTTTGATGAATTTGATCTAATT
CTTGGCATGGATTTGTTGAC
Found at i:74457385 original size:49 final size:49
Alignment explanation
Indices: 74457328--74457515 Score: 209
Period size: 49 Copynumber: 3.8 Consensus size: 49
74457318 TAGCCAAAGC
*
74457328 TATCTGGTACGCATAGTAGCCCGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCCGCACTTAGTACTACACATGCGACCAAT
** * * * * *
74457377 TATCTGGTACATGTAGTAGCCTGCACTTAATACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCCGCACTTAGTACTACACATGCGA-CCAA-T
* ** *
74457428 TATCGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCCGCACTTAGTACTACACATGCGACCAAT
*
74457477 TATAC-GGTACACGTAGTAG-CCGACACTTAGTACTACACA
1 TAT-CTGGTACACATAGTAGCCCG-CACTTAGTACTACACA
74457516 CGTGACCTCA
Statistics
Matches: 114, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
48 2 0.02
49 68 0.60
50 7 0.06
51 37 0.32
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCCGCACTTAGTACTACACATGCGACCAAT
Found at i:74457468 original size:100 final size:100
Alignment explanation
Indices: 74457328--74457520 Score: 309
Period size: 100 Copynumber: 1.9 Consensus size: 100
74457318 TAGCCAAAGC
* *
74457328 TATCTGGTACGCATAGTAGCCCGCACTTAGTACTACACATGCGACCAATTAT-CTGGTACATGTA
1 TATCGGGTACGCATAGTAGCCCGCACTTAGTACTACACATGCGACCAATTATAC-GGTACACGTA
74457392 GTAGCCTG-CACTTAATACTACACACGTGATCGAAGT
65 GTAGCC-GACACTTAATACTACACACGTGATCGAAGT
* *
74457428 TATCGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATACGGTACACGTAG
1 TATCGGGTACGCATAGTAGCCCGCACTTAGTACTACACATGCGACCAATTATACGGTACACGTAG
*
74457493 TAGCCGACACTTAGTACTACACACGTGA
66 TAGCCGACACTTAATACTACACACGTGA
74457521 CCTCACAATA
Statistics
Matches: 86, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
99 1 0.01
100 84 0.98
101 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.26
Consensus pattern (100 bp):
TATCGGGTACGCATAGTAGCCCGCACTTAGTACTACACATGCGACCAATTATACGGTACACGTAG
TAGCCGACACTTAATACTACACACGTGATCGAAGT
Found at i:74458809 original size:48 final size:47
Alignment explanation
Indices: 74458731--74458868 Score: 140
Period size: 46 Copynumber: 2.9 Consensus size: 47
74458721 GGATGTTATA
* * *
74458731 GTCTGGGACATGCATCGACCA-C-ATTATGAGAGCCAGTGTAAGACCAT
1 GTCTGGGACATGAATCGA-CATCGA-GATGAGAGCCAGTGTAAGACAAT
*
74458778 GTCTGGGACATGGAATCGACATTGAGATGAGAGCCAGTGTAAGA-AAT
1 GTCTGGGACAT-GAATCGACATCGAGATGAGAGCCAGTGTAAGACAAT
* * * *
74458825 GTTTGGGACATGCATCGGCCTCGAGATGTA-AGCCAGTGTAAGAC
1 GTCTGGGACATGAATCGACATCGAGATG-AGAGCCAGTGTAAGAC
74458869 GTGTCTAAGA
Statistics
Matches: 77, Mismatches: 9, Indels: 10
0.80 0.09 0.10
Matches are distributed among these distances:
46 26 0.34
47 26 0.34
48 24 0.31
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.22
Consensus pattern (47 bp):
GTCTGGGACATGAATCGACATCGAGATGAGAGCCAGTGTAAGACAAT
Found at i:74458866 original size:46 final size:48
Alignment explanation
Indices: 74458756--74458868 Score: 142
Period size: 46 Copynumber: 2.4 Consensus size: 48
74458746 CGACCACATT
* *
74458756 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGAATCGACATTGAG
1 ATGAGAGCCAGTGTAAGACAATGTCTGGGACATGGAATCGACATCGAG
* * * *
74458804 ATGAGAGCCAGTGTAAGA-AATGTTTGGGACAT-GCATCGGCCTCGAG
1 ATGAGAGCCAGTGTAAGACAATGTCTGGGACATGGAATCGACATCGAG
74458850 ATGTA-AGCCAGTGTAAGAC
1 ATG-AGAGCCAGTGTAAGAC
74458869 GTGTCTAAGA
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
46 26 0.46
47 13 0.23
48 18 0.32
ACGTcount: A:0.31, C:0.17, G:0.31, T:0.21
Consensus pattern (48 bp):
ATGAGAGCCAGTGTAAGACAATGTCTGGGACATGGAATCGACATCGAG
Found at i:74461393 original size:16 final size:17
Alignment explanation
Indices: 74461354--74461395 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
74461344 ATATGTAAAA
*
74461354 AAATATATAGAAAATGC
1 AAATATATAGAAAATCC
* *
74461371 AAGTATAT-GTAAATCC
1 AAATATATAGAAAATCC
74461387 AAATATATA
1 AAATATATA
74461396 TGGGAAAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.55, C:0.07, G:0.10, T:0.29
Consensus pattern (17 bp):
AAATATATAGAAAATCC
Found at i:74468180 original size:17 final size:17
Alignment explanation
Indices: 74468137--74468206 Score: 54
Period size: 17 Copynumber: 4.2 Consensus size: 17
74468127 TATGCAGTAT
* *
74468137 AATATAAAAGAAAATAA
1 AATAAAAAATAAAATAA
* *
74468154 ATTAATAAATAAAATAA
1 AATAAAAAATAAAATAA
*
74468171 AATAAAAAATTAAAGT--
1 AATAAAAAA-TAAAATAA
* *
74468187 AATAAAAAATGAAACAA
1 AATAAAAAATAAAATAA
74468204 AAT
1 AAT
74468207 TTAGAACAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
15 3 0.08
16 9 0.22
17 23 0.57
18 5 0.12
ACGTcount: A:0.73, C:0.01, G:0.04, T:0.21
Consensus pattern (17 bp):
AATAAAAAATAAAATAA
Found at i:74468184 original size:22 final size:22
Alignment explanation
Indices: 74468135--74468180 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
74468125 AATATGCAGT
*
74468135 ATAATATAAAAGAAAATAAATTA
1 ATAA-ATAAAAGAAAATAAATAA
*
74468158 ATAAATAAAATAAAATAAA-AA
1 ATAAATAAAAGAAAATAAATAA
74468179 AT
1 AT
74468181 TAAAGTAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.14
22 14 0.67
23 4 0.19
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (22 bp):
ATAAATAAAAGAAAATAAATAA
Found at i:74492138 original size:23 final size:24
Alignment explanation
Indices: 74492088--74492142 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 24
74492078 AGAAAAATTC
*
74492088 TAAATTTTATAGAATGTATATGCTA
1 TAAATTTTATAG-ATGTACATGCTA
74492113 TAAATTTTATAG-TGTACATTGC-A
1 TAAATTTTATAGATGTACA-TGCTA
74492136 TAAATTT
1 TAAATTT
74492143 CATTTTCCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 13 0.46
24 3 0.11
25 12 0.43
ACGTcount: A:0.38, C:0.05, G:0.11, T:0.45
Consensus pattern (24 bp):
TAAATTTTATAGATGTACATGCTA
Found at i:74492684 original size:57 final size:57
Alignment explanation
Indices: 74492563--74492758 Score: 250
Period size: 57 Copynumber: 3.4 Consensus size: 57
74492553 TTACTGATGG
* * * * * * * **
74492563 GATTTAGCCTGAACTGGTAATCCTGATATAATC-CCTCTCGAGCATATGTTACAATTAA
1 GATTTAGCCTGGACTGGTAATCCTAAT-TGAGCTCTTCT-AAGCATATATTACAAAAAA
*
74492621 GATTTAGCCTAGACTGGTAATCCTAATTGAGCTCTTCTAAGCATATATTACAAAAAA
1 GATTTAGCCTGGACTGGTAATCCTAATTGAGCTCTTCTAAGCATATATTACAAAAAA
* * *
74492678 GATTTAGCCTGGACTGGTAATCCTAATTGAGCTCTTCTGAGCATATATTCCAAAAAG
1 GATTTAGCCTGGACTGGTAATCCTAATTGAGCTCTTCTAAGCATATATTACAAAAAA
74492735 GATTTAGCCTGGACTGGTAATCCT
1 GATTTAGCCTGGACTGGTAATCCT
74492759 GTTATATGTT
Statistics
Matches: 123, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
57 95 0.77
58 28 0.23
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.32
Consensus pattern (57 bp):
GATTTAGCCTGGACTGGTAATCCTAATTGAGCTCTTCTAAGCATATATTACAAAAAA
Found at i:74494137 original size:46 final size:45
Alignment explanation
Indices: 74494083--74494346 Score: 173
Period size: 46 Copynumber: 5.6 Consensus size: 45
74494073 ATTTGTGTGA
* *
74494083 TAGTGTAAGATATGTCTGGGACATGCATCGGCCACATTATGAGAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTACGAGAGC
* * * *
74494129 CAGTGTAAGACCATGCCTGAGACATGGCATCAG--CATTGGGACGAGAGC
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATT---ACGAGAGC
* * *
74494177 TAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGTGACGTA-AGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTACG-AGAGC
*
74494223 TAGTGTAAGACATGTCTGGGACATGCATCGG--C--TACGAGATGTG
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTACGAGA-G-C
* * *** * *
74494266 TCAATGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTTAATAGT
1 T-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCC-C-ATTACGAGAGC
74494316 TAGTGTAAGACCATGTCTGGGACATGGCATC
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATC
74494347 TACTGGATGG
Statistics
Matches: 172, Mismatches: 25, Indels: 39
0.73 0.11 0.17
Matches are distributed among these distances:
40 1 0.01
41 4 0.02
42 1 0.01
43 2 0.01
44 8 0.05
45 18 0.10
46 57 0.33
47 23 0.13
48 22 0.13
49 31 0.18
50 1 0.01
51 1 0.01
52 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (45 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTACGAGAGC
Found at i:74506001 original size:40 final size:39
Alignment explanation
Indices: 74505778--74506039 Score: 293
Period size: 39 Copynumber: 6.6 Consensus size: 39
74505768 TTGAATGATG
*
74505778 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAA-A
* *
74505817 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAA
* *
74505856 TTTCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
*
74505896 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
* *
74505935 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTATTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
74505974 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAATATAA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-AA
*
74506015 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
74506040 AACGAGGAGC
Statistics
Matches: 200, Mismatches: 16, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
39 126 0.63
40 63 0.31
41 10 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:74507762 original size:18 final size:18
Alignment explanation
Indices: 74507739--74507782 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
74507729 CATGAGGGTC
74507739 AATCACCACTTGGGAACA
1 AATCACCACTTGGGAACA
74507757 AATCACCACTTGGGAACA
1 AATCACCACTTGGGAACA
*
74507775 AATGACCA
1 AATCACCA
74507783 AAAAAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.41, C:0.27, G:0.16, T:0.16
Consensus pattern (18 bp):
AATCACCACTTGGGAACA
Found at i:74510560 original size:10 final size:10
Alignment explanation
Indices: 74510545--74510611 Score: 61
Period size: 10 Copynumber: 6.9 Consensus size: 10
74510535 TCGCTCTCCC
*
74510545 CTTCTTTTCT
1 CTTCTTTCCT
74510555 CTTCTTTCCT
1 CTTCTTTCCT
*
74510565 -TTCTTT-TT
1 CTTCTTTCCT
*
74510573 CTTTCATTCCT
1 C-TTCTTTCCT
74510584 CTTCTTT-C-
1 CTTCTTTCCT
74510592 CTTCTTTCCT
1 CTTCTTTCCT
74510602 CCTTCTTTCC
1 -CTTCTTTCC
74510612 CTTTCCTTCT
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
8 8 0.17
9 8 0.17
10 19 0.41
11 11 0.24
ACGTcount: A:0.01, C:0.36, G:0.00, T:0.63
Consensus pattern (10 bp):
CTTCTTTCCT
Found at i:74510611 original size:29 final size:29
Alignment explanation
Indices: 74510544--74510611 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
74510534 ATCGCTCTCC
* *
74510544 CCTTCTTTTCTCTTCTTTCCTTTCTTTTT
1 CCTTCTTTCCTCTTCTTTCCTTTCTTTCT
* *
74510573 CTTTCATTCCTCTTCTTTCC-TTCTTTCCT
1 CCTTCTTTCCTCTTCTTTCCTTTCTTT-CT
74510602 CCTTCTTTCC
1 CCTTCTTTCC
74510612 CTTTCCTTCT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
28 6 0.19
29 26 0.81
ACGTcount: A:0.01, C:0.37, G:0.00, T:0.62
Consensus pattern (29 bp):
CCTTCTTTCCTCTTCTTTCCTTTCTTTCT
Found at i:74512386 original size:11 final size:11
Alignment explanation
Indices: 74512370--74512408 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
74512360 CCTTGAGTCC
*
74512370 TTTTATTCTAT
1 TTTTATTTTAT
74512381 TTTTATTTTA-
1 TTTTATTTTAT
74512391 TTTTATTTTAT
1 TTTTATTTTAT
74512402 TTTTATT
1 TTTTATT
74512409 ACAATTCTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 10 0.38
11 16 0.62
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTTATTTTAT
Found at i:74512389 original size:5 final size:5
Alignment explanation
Indices: 74512370--74512404 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
74512360 CCTTGAGTCC
*
74512370 TTTTA TTCTA TTTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA -TTTTA TTTTA TTTTA TTTTA TTTT
74512405 TATTACAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
5 23 0.85
6 4 0.15
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:74515429 original size:46 final size:47
Alignment explanation
Indices: 74515377--74515466 Score: 130
Period size: 46 Copynumber: 1.9 Consensus size: 47
74515367 TCTTACATCT
* *
74515377 CACATATCGAAGCTGATGTCATGTCCCA-ATATGGTCTT-CACTAACC
1 CACATATCGAAGC-GATGCCATGTCCCAGACATGGTCTTACACTAACC
*
74515423 CACATATCGAGGCGATGCCATGTCCCAGACATGGTCTTACACTA
1 CACATATCGAAGCGATGCCATGTCCCAGACATGGTCTTACACTA
74515467 GCTCTCGTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
45 13 0.33
46 21 0.54
47 5 0.13
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.26
Consensus pattern (47 bp):
CACATATCGAAGCGATGCCATGTCCCAGACATGGTCTTACACTAACC
Found at i:74526606 original size:25 final size:25
Alignment explanation
Indices: 74526558--74526617 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
74526548 CGATTTACAG
74526558 AATTACCATTTTACCCTCAGTTTAT
1 AATTACCATTTTACCCTCAGTTTAT
* *
74526583 AATTACTATTTTACCCTC-GATTTACA
1 AATTACCATTTTACCCTCAG-TTTA-T
74526609 AATTACCAT
1 AATTACCAT
74526618 ACCCTAGTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
24 1 0.03
25 21 0.70
26 8 0.27
ACGTcount: A:0.32, C:0.23, G:0.03, T:0.42
Consensus pattern (25 bp):
AATTACCATTTTACCCTCAGTTTAT
Found at i:74526647 original size:20 final size:21
Alignment explanation
Indices: 74526594--74526682 Score: 90
Period size: 21 Copynumber: 4.0 Consensus size: 21
74526584 ATTACTATTT
74526594 TACCCTCGATTTACAAATTACCA
1 TACCCTCG-TTTA-AAATTACCA
* *
74526617 TACCCTAGTTTAAAATTACTA
1 TACCCTCGTTTAAAATTACCA
74526638 T-CCCTCGTTTAAAAATTACCAAAA
1 TACCCTCGTTT-AAAATTACC---A
*
74526662 TACCCTGGTTTAAAATTACCA
1 TACCCTCGTTTAAAATTACCA
74526683 AAATACCCAT
Statistics
Matches: 56, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
20 8 0.14
21 18 0.32
22 4 0.07
23 7 0.12
24 11 0.20
25 8 0.14
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.33
Consensus pattern (21 bp):
TACCCTCGTTTAAAATTACCA
Found at i:74526675 original size:45 final size:43
Alignment explanation
Indices: 74526569--74526680 Score: 118
Period size: 45 Copynumber: 2.4 Consensus size: 43
74526559 ATTACCATTT
* *
74526569 TACCCTCAGTTTATAATTACTATTTTACCCTCGATTTACAAATTACCA
1 TACCCT-AGTTTAAAATTACTA---T-CCCTCGATTTAAAAATTACCA
74526617 TACCCTAGTTTAAAATTACTATCCCTCG-TTTAAAAATTACCAAAA
1 TACCCTAGTTTAAAATTACTATCCCTCGATTTAAAAATTACC---A
*
74526662 TACCCTGGTTTAAAATTAC
1 TACCCTAGTTTAAAATTAC
74526681 CAAAATACCC
Statistics
Matches: 58, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
42 12 0.21
43 6 0.10
44 1 0.02
45 19 0.33
47 14 0.24
48 6 0.10
ACGTcount: A:0.35, C:0.23, G:0.05, T:0.37
Consensus pattern (43 bp):
TACCCTAGTTTAAAATTACTATCCCTCGATTTAAAAATTACCA
Found at i:74526711 original size:26 final size:24
Alignment explanation
Indices: 74526616--74526745 Score: 106
Period size: 24 Copynumber: 5.3 Consensus size: 24
74526606 ACAAATTACC
* *
74526616 ATACCCTAGTTTAAAATTA-C--T
1 ATACCCTGGTTTAAAATTACCAAA
*
74526637 AT-CCCTCGTTTAAAAATTACCAAA
1 ATACCCTGGTTT-AAAATTACCAAA
74526661 ATACCCTGGTTTAAAATTACCAAA
1 ATACCCTGGTTTAAAATTACCAAA
* *
74526685 ATACCCATGGTTTGCAAATTACTAAA
1 ATACCC-TGGTTT-AAAATTACCAAA
** *
74526711 ATACCCCTGTAGGGTAAAATTACCGAA
1 ATA-CCCTG--GTTTAAAATTACCAAA
74526738 ATACCCTG
1 ATACCCTG
74526746 TAGGTAGAAT
Statistics
Matches: 89, Mismatches: 10, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
20 8 0.09
21 9 0.10
22 1 0.01
24 20 0.22
25 14 0.16
26 20 0.22
27 15 0.17
28 2 0.02
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.29
Consensus pattern (24 bp):
ATACCCTGGTTTAAAATTACCAAA
Found at i:74526739 original size:27 final size:25
Alignment explanation
Indices: 74526649--74526760 Score: 95
Period size: 26 Copynumber: 4.4 Consensus size: 25
74526639 CCCTCGTTTA
*
74526649 AAAATTACCAAAATACCCTG--GTTT
1 AAAATTACCAAAATACCCTGTAG-GT
**
74526673 AAAATTACCAAAATACCCATGGTTTG-
1 AAAATTACCAAAATACCC-T-GTAGGT
* *
74526699 CAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACCAAAATA-CCCTGTA-GGT
*
74526726 AAAATTACCGAAATACCCTGTAGGT
1 AAAATTACCAAAATACCCTGTAGGT
*
74526751 AGAATTACCA
1 AAAATTACCA
74526761 TTTTGCCCCT
Statistics
Matches: 70, Mismatches: 11, Indels: 13
0.74 0.12 0.14
Matches are distributed among these distances:
24 18 0.26
25 14 0.20
26 23 0.33
27 15 0.21
ACGTcount: A:0.41, C:0.21, G:0.12, T:0.26
Consensus pattern (25 bp):
AAAATTACCAAAATACCCTGTAGGT
Found at i:74526757 original size:25 final size:27
Alignment explanation
Indices: 74526700--74526759 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
74526690 CATGGTTTGC
**
74526700 AAATTACTAAAATACCCCTGTAGGGTA
1 AAATTACCGAAATACCCCTGTAGGGTA
74526727 AAATTACCGAAATA-CCCTGTA-GGTA
1 AAATTACCGAAATACCCCTGTAGGGTA
*
74526752 GAATTACC
1 AAATTACC
74526760 ATTTTGCCCC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
25 11 0.37
26 7 0.23
27 12 0.40
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (27 bp):
AAATTACCGAAATACCCCTGTAGGGTA
Found at i:74533974 original size:48 final size:48
Alignment explanation
Indices: 74533886--74534166 Score: 273
Period size: 48 Copynumber: 5.9 Consensus size: 48
74533876 TGATACTAGG
* * *
74533886 GATATGTGAGCCAGTGAAAGACCATG-CTTGGAGCATGGCATCAGCATT
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGA-CATGGCATCAGCATT
* * * * * *
74533934 TATACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATT
* * * * *
74533982 GATATGTGGGTTAGTGTAAGACCATATTTGGGACATGACATCAGC-TT
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATT
* * * *
74534029 CGATATGTGAGCCAGTGTAAGACCATGT-TTGGAGCGTGACATC-GACATT
1 -GATATGTGAGCTAGTGTAAGACCATGTCTGGGA-CATGGCATCAG-CATT
* * * * * *
74534078 TATACGAGAGCTAGTGTAAGACAATGTCTGGGACATGGCATCAGCCTC
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATT
*
74534126 GATATGTGGGCTAGTGTAAGACCATGTCTGGGACATGGCAT
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
74534167 TGGCATCTTA
Statistics
Matches: 186, Mismatches: 40, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
47 6 0.03
48 168 0.90
49 12 0.06
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATT
Found at i:74534146 original size:144 final size:144
Alignment explanation
Indices: 74533886--74534162 Score: 457
Period size: 144 Copynumber: 1.9 Consensus size: 144
74533876 TGATACTAGG
*
74533886 GATATGTGAGCCAGTGAAAGACCATGCTTGGAGCATGGCATCAGCATTTATACGAGAGCTAGTGT
1 GATATGTGAGCCAGTGAAAGACCATGCTTGGAGCATGACATCAGCATTTATACGAGAGCTAGTGT
* * * *
74533951 AAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGGGTTAGTGTAAGACCATATTTGGGAC
66 AAGACAATGTCTGGGACATGGCATCAGCCTCGATATGTGGGCTAGTGTAAGACCATATCTGGGAC
74534016 ATGACATCAGCTTC
131 ATGACATCAGCTTC
* * *
74534030 GATATGTGAGCCAGTGTAAGACCATGTTTGGAGCGTGACATC-GACATTTATACGAGAGCTAGTG
1 GATATGTGAGCCAGTGAAAGACCATGCTTGGAGCATGACATCAG-CATTTATACGAGAGCTAGTG
*
74534094 TAAGACAATGTCTGGGACATGGCATCAGCCTCGATATGTGGGCTAGTGTAAGACCATGTCTGGGA
65 TAAGACAATGTCTGGGACATGGCATCAGCCTCGATATGTGGGCTAGTGTAAGACCATATCTGGGA
74534159 CATG
130 CATG
74534163 GCATTGGCAT
Statistics
Matches: 123, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
143 1 0.01
144 122 0.99
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (144 bp):
GATATGTGAGCCAGTGAAAGACCATGCTTGGAGCATGACATCAGCATTTATACGAGAGCTAGTGT
AAGACAATGTCTGGGACATGGCATCAGCCTCGATATGTGGGCTAGTGTAAGACCATATCTGGGAC
ATGACATCAGCTTC
Found at i:74537194 original size:6 final size:6
Alignment explanation
Indices: 74537183--74537215 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
74537173 ATAGAATTGT
74537183 AATAAA AATAAA AATAAA AAT-AA AATAAA AATA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATA
74537216 GAATAAAAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AATAAA
Found at i:74537201 original size:11 final size:11
Alignment explanation
Indices: 74537183--74537223 Score: 64
Period size: 11 Copynumber: 3.6 Consensus size: 11
74537173 ATAGAATTGT
74537183 AATAAAAATAAA
1 AATAAAAAT-AA
74537195 AATAAAAATAA
1 AATAAAAATAA
*
74537206 AATAAAAATAG
1 AATAAAAATAA
74537217 AATAAAA
1 AATAAAA
74537224 GGACTCAAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
11 19 0.68
12 9 0.32
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.17
Consensus pattern (11 bp):
AATAAAAATAA
Found at i:74539009 original size:19 final size:19
Alignment explanation
Indices: 74538973--74539053 Score: 62
Period size: 19 Copynumber: 4.3 Consensus size: 19
74538963 AAATATGAGG
*
74538973 GAAGAAGGAAAG--GGAAA
1 GAAGGAGGAAAGAAGGAAA
74538990 GAAGGAGGAAAGAAGGAAA
1 GAAGGAGGAAAGAAGGAAA
* *
74539009 GAA-GAGGGAATGAAAGAAA
1 GAAGGA-GGAAAGAAGGAAA
*
74539028 -AAGAAAGGAAAGAAGAGAAAA
1 GAAG-GAGGAAAGAAG-G-AAA
74539049 GAAGG
1 GAAGG
74539054 GGAGAGCGAT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
17 11 0.22
18 4 0.08
19 26 0.53
20 2 0.04
21 3 0.06
22 3 0.06
ACGTcount: A:0.60, C:0.00, G:0.38, T:0.01
Consensus pattern (19 bp):
GAAGGAGGAAAGAAGGAAA
Found at i:74541855 original size:18 final size:18
Alignment explanation
Indices: 74541829--74541872 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
74541819 AAAATTTTTT
*
74541829 TGGTCATTTGTTCCCAAG
1 TGGTGATTTGTTCCCAAG
74541847 TGGTGATTTGTTCCCAAG
1 TGGTGATTTGTTCCCAAG
74541865 TGGTGATT
1 TGGTGATT
74541873 GACCCTCATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.16, C:0.16, G:0.27, T:0.41
Consensus pattern (18 bp):
TGGTGATTTGTTCCCAAG
Found at i:74543694 original size:39 final size:39
Alignment explanation
Indices: 74543577--74543838 Score: 300
Period size: 39 Copynumber: 6.6 Consensus size: 39
74543567 GCTCCTCGTT
* * * *
74543577 CAAATGCCTTCGGGACATAGCCCGG-TTATATTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCA
* * * *
74543617 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
74543657 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
74543696 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* *
74543735 CAAATGCCTTCGGGCTTAGCCCGAAATTTGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
74543774 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
74543815 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
74543839 CATCATTCAA
Statistics
Matches: 201, Mismatches: 15, Indels: 13
0.88 0.07 0.06
Matches are distributed among these distances:
39 128 0.64
40 62 0.31
41 11 0.05
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:74547774 original size:25 final size:25
Alignment explanation
Indices: 74547716--74547777 Score: 65
Period size: 25 Copynumber: 2.4 Consensus size: 25
74547706 AAATTTAAGC
*
74547716 AAAATTAAAATAAAACTAAATTGCAAT
1 AAAAATAAAATAAAAC-AAATTGC-AT
74547743 AAAAATAAAATAAAA-AAATTGC-T
1 AAAAATAAAATAAAACAAATTGCAT
74547766 AAAGTAATAAAA
1 AAA--AATAAAA
74547778 ATTAAGCATT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
23 4 0.12
25 14 0.44
27 14 0.44
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.23
Consensus pattern (25 bp):
AAAAATAAAATAAAACAAATTGCAT
Found at i:74549648 original size:40 final size:40
Alignment explanation
Indices: 74549567--74549676 Score: 121
Period size: 40 Copynumber: 2.8 Consensus size: 40
74549557 AACTATTGAA
* ** * * ** *
74549567 TGAAAGCACATACGTTTCCCTGTTTGAACTTTGGTACCCC
1 TGAATGCACATACGTGCCCCTATTTGTACTTCAGTAACCC
74549607 TGAATGCACATACGTGCCCCTATTTGTACTTCAGTAACCC
1 TGAATGCACATACGTGCCCCTATTTGTACTTCAGTAACCC
* * *
74549647 TGAGTGCACTTACGTGCCCCTATTTATACT
1 TGAATGCACATACGTGCCCCTATTTGTACT
74549677 CCGGTAACTT
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.23, C:0.28, G:0.16, T:0.33
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCCTATTTGTACTTCAGTAACCC
Found at i:74569407 original size:21 final size:21
Alignment explanation
Indices: 74569383--74569440 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 21
74569373 ATTACTTAGA
74569383 ATTTTTTATTTTTTTTATTGC
1 ATTTTTTATTTTTTTTATTGC
*
74569404 A-TTTGT-TTTTTTTTATTGC
1 ATTTTTTATTTTTTTTATTGC
**
74569423 -TTAATTATATTTTTTTAT
1 ATTTTTTAT-TTTTTTTAT
74569441 CTGGTAGGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
19 15 0.50
20 5 0.17
21 10 0.33
ACGTcount: A:0.17, C:0.03, G:0.05, T:0.74
Consensus pattern (21 bp):
ATTTTTTATTTTTTTTATTGC
Found at i:74573178 original size:39 final size:39
Alignment explanation
Indices: 74573090--74573350 Score: 311
Period size: 39 Copynumber: 6.6 Consensus size: 39
74573080 TTGAATGATG
*
74573090 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
74573128 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATAC-AAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
*
74573168 TTCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
74573207 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
74573246 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
74573285 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
74573324 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
74573351 AACGAGGAGC
Statistics
Matches: 199, Mismatches: 16, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
38 23 0.12
39 116 0.58
40 51 0.26
41 8 0.04
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:74575050 original size:17 final size:17
Alignment explanation
Indices: 74575028--74575064 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
74575018 CCATGAGGGT
74575028 CAATCACCACTTGGGAA
1 CAATCACCACTTGGGAA
74575045 CAATCACCACTTGGGAA
1 CAATCACCACTTGGGAA
74575062 CAA
1 CAA
74575065 ATGACCAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.38, C:0.30, G:0.16, T:0.16
Consensus pattern (17 bp):
CAATCACCACTTGGGAA
Found at i:74577832 original size:19 final size:20
Alignment explanation
Indices: 74577807--74577872 Score: 68
Period size: 19 Copynumber: 3.4 Consensus size: 20
74577797 TCGCTCTCCC
74577807 CTTCTTTTCTCTTCTTTCCT
1 CTTCTTTTCTCTTCTTTCCT
*
74577827 -TTCTTTT-TCTTTCATTCCCT
1 CTTCTTTTCTC-TTC-TTTCCT
74577847 CTTC-TTTC-CTTCTTTCCT
1 CTTCTTTTCTCTTCTTTCCT
74577865 CCTTCTTT
1 -CTTCTTT
74577873 CCCTTTCCTT
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
18 7 0.18
19 17 0.45
20 11 0.29
21 3 0.08
ACGTcount: A:0.02, C:0.35, G:0.00, T:0.64
Consensus pattern (20 bp):
CTTCTTTTCTCTTCTTTCCT
Found at i:74577873 original size:19 final size:19
Alignment explanation
Indices: 74577806--74577886 Score: 62
Period size: 19 Copynumber: 4.3 Consensus size: 19
74577796 ATCGCTCTCC
74577806 CCTTCTTTTCTCTTCTTTCCTT
1 CCTTC-TTTC-CTTCTTTCC-T
* * *
74577828 TCTT-TTTCTTTCATTCC-
1 CCTTCTTTCCTTCTTTCCT
74577845 CTCTTCTTTCCTTCTTTCCT
1 C-CTTCTTTCCTTCTTTCCT
74577865 CCTTCTTTCC--CTTTCCT
1 CCTTCTTTCCTTCTTTCCT
*
74577882 TCTTC
1 CCTTC
74577887 CCTCATATTT
Statistics
Matches: 49, Mismatches: 7, Indels: 11
0.73 0.10 0.16
Matches are distributed among these distances:
17 11 0.22
18 3 0.06
19 27 0.55
20 5 0.10
22 3 0.06
ACGTcount: A:0.01, C:0.38, G:0.00, T:0.60
Consensus pattern (19 bp):
CCTTCTTTCCTTCTTTCCT
Found at i:74577875 original size:30 final size:30
Alignment explanation
Indices: 74577806--74577876 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
74577796 ATCGCTCTCC
* *
74577806 CCTTCTTT-TCTCTTCTTTCCTTTCTTTTT
1 CCTTCTTTCCCTCTTCTTTCCTTTCTTTCT
* *
74577835 CTTTCATTCCCTCTTCTTTCC-TTCTTTCCT
1 CCTTCTTTCCCTCTTCTTTCCTTTCTTT-CT
74577865 CCTTCTTTCCCT
1 CCTTCTTTCCCT
74577877 TTCCTTCTTC
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
29 12 0.35
30 22 0.65
ACGTcount: A:0.01, C:0.38, G:0.00, T:0.61
Consensus pattern (30 bp):
CCTTCTTTCCCTCTTCTTTCCTTTCTTTCT
Found at i:74579660 original size:6 final size:6
Alignment explanation
Indices: 74579649--74579682 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
74579639 CCTTTTATTC
74579649 TATTTT TATTTT TATTTT TATTTT TATTTT TATT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATT
74579683 ACAATTCTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
TATTTT
Found at i:74582819 original size:48 final size:48
Alignment explanation
Indices: 74582748--74583028 Score: 262
Period size: 48 Copynumber: 5.9 Consensus size: 48
74582738 TAAGATGCCA
74582748 ATGCCATGTCCCAGACATGGTCTTACACTAGCCCACATATCGAGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCCCACATATCGAGGCTG
* * * * ** *
74582796 ATGCCATGTCCCAGACATTGTCTTACACTAGCTCTCGTATAAATG-TCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCCCACATATCGAGGCT-G
* * * * * *
74582844 ATGTCACG-CTCCAAACATGGTCTTACACTGGCTCACATATCGAAGCTG
1 ATGCCATGTC-CCAGACATGGTCTTACACTAGCCCACATATCGAGGCTG
* * * * *
74582892 ATGTCATGTCCCAAATATGGTCTTACACTAACCCACATATCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCCCACATATCGAGGCTG
* * * ** *
74582940 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATAAATGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCCCACATATCGAGGCTG
* * * *
74582988 ATGCCATGCTCCAAG-CATGGTCTTTCACTGGCTCACATATC
1 ATGCCATG-TCCCAGACATGGTCTTACACTAGCCCACATATC
74583029 CCTAGTATCA
Statistics
Matches: 187, Mismatches: 41, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
47 2 0.01
48 178 0.95
49 7 0.04
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCCCACATATCGAGGCTG
Found at i:74583017 original size:144 final size:144
Alignment explanation
Indices: 74582752--74583028 Score: 457
Period size: 144 Copynumber: 1.9 Consensus size: 144
74582742 ATGCCAATGC
* * * *
74582752 CATGTCCCAGACATGGTCTTACACTAGCCCACATATCGAGGCTGATGCCATGTCCCAGACATTGT
1 CATGTCCCAAACATGGTCTTACACTAACCCACATATCGAGGCCGATGCCATGTCCCAGACATGGT
*
74582817 CTTACACTAGCTCTCGTATAAATGTCGATGTCACGCTCCAAACATGGTCTTACACTGGCTCACAT
66 CTTACACTAGCTCTCGTATAAATGTCGATGCCACGCTCCAAACATGGTCTTACACTGGCTCACAT
74582882 ATCGAAGCTGATGT
131 ATCGAAGCTGATGT
*
74582896 CATGTCCCAAATATGGTCTTACACTAACCCACATATCGAGGCCGATGCCATGTCCCAGACATGGT
1 CATGTCCCAAACATGGTCTTACACTAACCCACATATCGAGGCCGATGCCATGTCCCAGACATGGT
* * *
74582961 CTTACACTAGCTCTCGTATAAATG-CTGATGCCATGCTCCAAGCATGGTCTTTCACTGGCTCACA
66 CTTACACTAGCTCTCGTATAAATGTC-GATGCCACGCTCCAAACATGGTCTTACACTGGCTCACA
74583025 TATC
130 TATC
74583029 CCTAGTATCA
Statistics
Matches: 123, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
143 1 0.01
144 122 0.99
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (144 bp):
CATGTCCCAAACATGGTCTTACACTAACCCACATATCGAGGCCGATGCCATGTCCCAGACATGGT
CTTACACTAGCTCTCGTATAAATGTCGATGCCACGCTCCAAACATGGTCTTACACTGGCTCACAT
ATCGAAGCTGATGT
Found at i:74587945 original size:40 final size:40
Alignment explanation
Indices: 74587890--74587984 Score: 154
Period size: 40 Copynumber: 2.4 Consensus size: 40
74587880 ACTGCATTTG
** *
74587890 GCACTAAGTGTGCGATTCAAAATAGCTTTGGTTATAAATA
1 GCACTAAGTGTGCGATTCAAAATAGCTTCAGCTATAAATA
*
74587930 GCACTAAGTGTGCGATTCAAAATATCTTCAGCTATAAATA
1 GCACTAAGTGTGCGATTCAAAATAGCTTCAGCTATAAATA
74587970 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
74587985 AATGGTATAG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (40 bp):
GCACTAAGTGTGCGATTCAAAATAGCTTCAGCTATAAATA
Found at i:74590091 original size:25 final size:27
Alignment explanation
Indices: 74590063--74590112 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 27
74590053 AGTTTAGCCA
74590063 ATTTAAACCCT-AGGGGT-ATTTCGGT
1 ATTTAAACCCTGAGGGGTAATTTCGGT
**
74590088 ATTTATGCCCTGAGGGGTAATTTCG
1 ATTTAAACCCTGAGGGGTAATTTCG
74590113 TACTTACGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 9 0.43
26 6 0.29
27 6 0.29
ACGTcount: A:0.22, C:0.16, G:0.26, T:0.36
Consensus pattern (27 bp):
ATTTAAACCCTGAGGGGTAATTTCGGT
Found at i:74590794 original size:27 final size:27
Alignment explanation
Indices: 74590748--74590822 Score: 116
Period size: 27 Copynumber: 2.8 Consensus size: 27
74590738 TTCTACCCTA
*
74590748 CAGGGGTA-TTTAGTAATTTTGCAAAC
1 CAGGGGTATTTTGGTAATTTTGCAAAC
* *
74590774 CATGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTGCAAAC
74590801 CAGGGGTATTTTGGTAATTTTG
1 CAGGGGTATTTTGGTAATTTTG
74590823 TAAATCAAGG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 7 0.16
27 36 0.84
ACGTcount: A:0.27, C:0.09, G:0.24, T:0.40
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTGCAAAC
Found at i:74590834 original size:27 final size:27
Alignment explanation
Indices: 74590751--74590835 Score: 109
Period size: 27 Copynumber: 3.2 Consensus size: 27
74590741 TACCCTACAG
* *
74590751 GGGTA-TTTAGTAATTTTGCAAACCAT
1 GGGTATTTTGGTAATTTTGCAAACCAA
* *
74590777 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTGCAAACCAA
* *
74590804 GGGTATTTTGGTAATTTTGTAAATCAA
1 GGGTATTTTGGTAATTTTGCAAACCAA
74590831 GGGTA
1 GGGTA
74590836 AAACGGTAAT
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 5 0.10
27 46 0.90
ACGTcount: A:0.29, C:0.08, G:0.24, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTGCAAACCAA
Done.