Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 226 of 333
Found at i:74590843 original size:27 final size:27
Alignment explanation
Indices: 74590813--74590966 Score: 188
Period size: 27 Copynumber: 5.7 Consensus size: 27
74590803 GGGGTATTTT
* *
74590813 GGTAATTTTGTAAATCAAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
*
74590840 GGTAATTCTATAAATCGAGGGT-AAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
* * *
74590866 TAGTAATTCTATAAA-CTGAGGGTAAAAT
1 -GGTAATTCTGTAAATC-GAGGGTAAAAC
*
74590894 GGTAATTCTGTAAATCGAGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGTAAAAC
74590921 GGTAATTCTGTAAA-CTGAGGGTAAAAC
1 GGTAATTCTGTAAATC-GAGGGTAAAAC
*
74590948 GGTAATTTTGTAAATCGAG
1 GGTAATTCTGTAAATCGAG
74590967 AGTACTTTGG
Statistics
Matches: 112, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
26 6 0.05
27 101 0.90
28 5 0.04
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
GGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:74590862 original size:54 final size:54
Alignment explanation
Indices: 74590811--74590981 Score: 218
Period size: 54 Copynumber: 3.2 Consensus size: 54
74590801 CAGGGGTATT
* * *
74590811 TTGGTAATTTTGTAAA-TCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAA
1 TTGGTAATTCTGTAAACT-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAA
* * * *
74590865 CTAGTAATTCTATAAACTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAA
1 TTGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAA
* * * **
74590919 ATGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTTTGTAAATCGAGAGTACT
1 TTGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAA
74590973 TTGGTAATT
1 TTGGTAATT
74590982 TTACAAGTCG
Statistics
Matches: 100, Mismatches: 16, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
54 99 0.99
55 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.32
Consensus pattern (54 bp):
TTGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAA
Found at i:74590978 original size:81 final size:81
Alignment explanation
Indices: 74590810--74590981 Score: 197
Period size: 81 Copynumber: 2.1 Consensus size: 81
74590800 CCAGGGGTAT
*
74590810 TTTGGTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAACTAGTAATTC
1 TTTGGTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAACTAGTAATTC
*
74590875 TATAAACTGAGGGTAA
66 TATAAACTGAGAGTAA
** * * * *
74590891 AATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAA-CTGAGGGTAAAAC-GGTAAT
1 TTTGGTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTATAAATC-GAGGGT-AAACTAGTAAT
* * *
74590954 TTTGTAAA-TCGAGAGTAC
64 TCTATAAACT-GAGAGTAA
74590972 TTTGGTAATT
1 TTTGGTAATT
74590982 TTACAAGTCG
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
80 2 0.03
81 69 0.92
82 4 0.05
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.33
Consensus pattern (81 bp):
TTTGGTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAACTAGTAATTC
TATAAACTGAGAGTAA
Found at i:74593664 original size:43 final size:44
Alignment explanation
Indices: 74593595--74593712 Score: 168
Period size: 43 Copynumber: 2.7 Consensus size: 44
74593585 CGTCACGTAC
* *
74593595 ATCATGAACTCAGACCAACTCGATGAGCTCAAG-TGGCACATGT
1 ATCATGAACTCAGACCAACTCAATGAGCTCAAGATGGCACATAT
* * *
74593638 ATCATGAACTCAAACCAATTCAATGAGCTC-GGATGGCACATAT
1 ATCATGAACTCAGACCAACTCAATGAGCTCAAGATGGCACATAT
*
74593681 ATCATGAACTCAGACCAACTCAATGAGTTCAA
1 ATCATGAACTCAGACCAACTCAATGAGCTCAA
74593713 ATCATATAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 1 0.02
43 63 0.98
ACGTcount: A:0.36, C:0.25, G:0.17, T:0.22
Consensus pattern (44 bp):
ATCATGAACTCAGACCAACTCAATGAGCTCAAGATGGCACATAT
Found at i:74600741 original size:43 final size:43
Alignment explanation
Indices: 74600679--74600798 Score: 170
Period size: 43 Copynumber: 2.8 Consensus size: 43
74600669 TGTCACGTAC
* *
74600679 ATCATGAACTCAGATCAACTCAATGAGCTCA-AGTGGCACATGT
1 ATCATGAACTCAGACCAACTCAATGAGCTCAGA-TGGCACATAT
* * *
74600722 ATCATGAACTTAGACCAACTCAATGAGTTCGGATGGCACATAT
1 ATCATGAACTCAGACCAACTCAATGAGCTCAGATGGCACATAT
*
74600765 ATCATGAACTCAGACCAACTCAATGAGTTCAGAT
1 ATCATGAACTCAGACCAACTCAATGAGCTCAGAT
74600799 CATATAATTT
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
43 68 0.99
44 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (43 bp):
ATCATGAACTCAGACCAACTCAATGAGCTCAGATGGCACATAT
Found at i:74606340 original size:16 final size:16
Alignment explanation
Indices: 74606321--74606355 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
74606311 GCAAAAGCCG
*
74606321 AAATGTCGAAAAGTCA
1 AAATGCCGAAAAGTCA
74606337 AAATGCCGAAAAGTCA
1 AAATGCCGAAAAGTCA
74606353 AAA
1 AAA
74606356 GTTTGGCTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.54, C:0.14, G:0.17, T:0.14
Consensus pattern (16 bp):
AAATGCCGAAAAGTCA
Found at i:74606345 original size:24 final size:22
Alignment explanation
Indices: 74606312--74606357 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
74606302 AGTAGATCAG
*
74606312 CAAAAGCCGAAATGTCGAAAAGT
1 CAAAAGCCGAAAAGTC-AAAAGT
74606335 CAAAATGCCGAAAAGTCAAAAGT
1 CAAAA-GCCGAAAAGTCAAAAGT
74606358 TTGGCTACGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.50, C:0.17, G:0.20, T:0.13
Consensus pattern (22 bp):
CAAAAGCCGAAAAGTCAAAAGT
Found at i:74606634 original size:57 final size:57
Alignment explanation
Indices: 74606567--74606727 Score: 200
Period size: 58 Copynumber: 2.8 Consensus size: 57
74606557 GTCAGCATGA
* *
74606567 ATAT-AATGTGATTTGGGCCGGATTGGCCATATAAATGAGATTGGGCCCAATGGGCC
1 ATATGAATGTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCCAATGGGCC
* * * * **
74606623 ATATGAATGTGAATTGGGGCTGATGGGCCATATGAATGTGAATTGGGCCTGATGGGCC
1 ATATGAATGTGAATTGGGCCGGATGGGCCATATAAATGAG-ATTGGGCCCAATGGGCC
* * *
74606681 ATAAGAACGTGAATTGGGCTGGATGGGCCATATAAATGAGA-TGGGCC
1 ATATGAATGTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCC
74606728 TAGTGAACCA
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
56 10 0.11
57 30 0.34
58 48 0.55
ACGTcount: A:0.27, C:0.14, G:0.34, T:0.25
Consensus pattern (57 bp):
ATATGAATGTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCCAATGGGCC
Found at i:74606694 original size:35 final size:29
Alignment explanation
Indices: 74606567--74606718 Score: 175
Period size: 29 Copynumber: 5.3 Consensus size: 29
74606557 GTCAGCATGA
* * *
74606567 ATAT-AATGTGATTTGGGCCGGATTGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* * **
74606595 ATATAAATGAG-ATTGGGCCCAATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
*
74606623 ATATGAATGTGAATTGGGGCTGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
74606652 ATATGAATGTGAATTGGGCCTGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* *
74606681 ATAAGAACGTGAATTGGG-CTGGATGGGCC
1 ATATGAATGTGAATTGGGCCT-GATGGGCC
*
74606710 ATATAAATG
1 ATATGAATG
74606719 AGATGGGCCT
Statistics
Matches: 105, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
28 28 0.27
29 77 0.73
ACGTcount: A:0.28, C:0.13, G:0.33, T:0.26
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGCCTGATGGGCC
Found at i:74611986 original size:16 final size:16
Alignment explanation
Indices: 74611944--74611986 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
74611934 GTAGATCAGC
*
74611944 AAAAGCTAAAATGCCG
1 AAAAGCTGAAATGCCG
* *
74611960 AAAAGCCGAAATGTCG
1 AAAAGCTGAAATGCCG
74611976 AAAAGCTGAAA
1 AAAAGCTGAAA
74611987 GTTTGGCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.51, C:0.16, G:0.21, T:0.12
Consensus pattern (16 bp):
AAAAGCTGAAATGCCG
Found at i:74612307 original size:58 final size:57
Alignment explanation
Indices: 74612206--74612351 Score: 184
Period size: 58 Copynumber: 2.5 Consensus size: 57
74612196 TGACTTGGGT
* * *
74612206 CGGATGGGCCATATAAATGAGATTGGGCCCAATGGGTCATATGAATGTGAATTGCGC
1 CGGATGGGCCATATAAATGAGATTGGGCCTAATGGGCCATATGAACGTGAATTGCGC
* * * * * * * *
74612263 CTGATGGGCTATATGAATGTGAATTGGGCCTGATGGGCCTTATGAACGTGAATTGGGT
1 CGGATGGGCCATATAAATGAG-ATTGGGCCTAATGGGCCATATGAACGTGAATTGCGC
74612321 CGGATGGGCCATATAAATGAGATTGGGCCTA
1 CGGATGGGCCATATAAATGAGATTGGGCCTA
74612352 GTAAGCCATA
Statistics
Matches: 72, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
57 26 0.36
58 46 0.64
ACGTcount: A:0.26, C:0.14, G:0.33, T:0.27
Consensus pattern (57 bp):
CGGATGGGCCATATAAATGAGATTGGGCCTAATGGGCCATATGAACGTGAATTGCGC
Found at i:74612318 original size:29 final size:29
Alignment explanation
Indices: 74612192--74612350 Score: 135
Period size: 29 Copynumber: 5.6 Consensus size: 29
74612182 GCATGAATAT
* * * * *
74612192 AATGTGACTTGGGTCGGATGGGCCATATA
1 AATGTGAATTGGGCCTGATGGGCCTTATG
* ** * *
74612221 AATGAG-ATTGGGCCCAATGGGTCATATG
1 AATGTGAATTGGGCCTGATGGGCCTTATG
*
74612249 AATGTGAATTGCGCCTGATGGG-CTATATG
1 AATGTGAATTGGGCCTGATGGGCCT-TATG
74612278 AATGTGAATTGGGCCTGATGGGCCTTATG
1 AATGTGAATTGGGCCTGATGGGCCTTATG
* * * * *
74612307 AACGTGAATTGGGTCGGATGGGCCATATA
1 AATGTGAATTGGGCCTGATGGGCCTTATG
*
74612336 AATGAG-ATTGGGCCT
1 AATGTGAATTGGGCCT
74612351 AGTAAGCCAT
Statistics
Matches: 105, Mismatches: 22, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
28 29 0.28
29 74 0.70
30 2 0.02
ACGTcount: A:0.25, C:0.14, G:0.33, T:0.28
Consensus pattern (29 bp):
AATGTGAATTGGGCCTGATGGGCCTTATG
Found at i:74614870 original size:27 final size:27
Alignment explanation
Indices: 74614840--74615017 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
74614830 ATATTGAGCC
* *
74614840 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
74614867 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
74614894 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
74614922 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
74614949 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
74614976 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
74615003 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74615018 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:74614979 original size:82 final size:81
Alignment explanation
Indices: 74614861--74615016 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
74614851 TGCTATATAA
* * *
74614861 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
74614926 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
74614943 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
74615007 CACTTAGTGC
65 CACTTAGTGC
74615017 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:74626059 original size:42 final size:42
Alignment explanation
Indices: 74626013--74626163 Score: 182
Period size: 42 Copynumber: 3.7 Consensus size: 42
74626003 ATGAGTTTAT
*
74626013 GTGTAAGACCATATCTGGGATATGGCATCGTTATGAGATTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTC
* * * * *
74626055 GTGTAAAACCATGTCTAGGACATGGCATCGATATGAGA-ATC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTC
* * **
74626096 GTGTAAGACCATAGCTGGGCTAT--CATCGATATGAGATCCC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTC
*
74626136 ATGTAAGACCATATCTGGGATATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
74626164 TGGTATGATT
Statistics
Matches: 89, Mismatches: 17, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
39 13 0.15
40 21 0.24
41 19 0.21
42 36 0.40
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTC
Found at i:74626171 original size:81 final size:82
Alignment explanation
Indices: 74626013--74626163 Score: 196
Period size: 81 Copynumber: 1.8 Consensus size: 82
74626003 ATGAGTTTAT
* * ** * *
74626013 GTGTAAGACCATATCTGGGATATGGCATCGTTATGAGATTTCGTGTAAAACCATGTCTAGGACAT
1 GTGTAAGACCATAGCTGGGATAT-GCATCGATATGAGATCCCATGTAAAACCATATCTAGGACAT
74626078 GGCATCGATATGAGAATC
65 GGCATCGATATGAGAATC
* * * *
74626096 GTGTAAGACCATAGCTGGGCTAT-CATCGATATGAGATCCCATGTAAGACCATATCTGGGATATG
1 GTGTAAGACCATAGCTGGGATATGCATCGATATGAGATCCCATGTAAAACCATATCTAGGACATG
74626160 GCAT
66 GCAT
74626164 TGGTATGATT
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
81 37 0.64
83 21 0.36
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (82 bp):
GTGTAAGACCATAGCTGGGATATGCATCGATATGAGATCCCATGTAAAACCATATCTAGGACATG
GCATCGATATGAGAATC
Found at i:74627631 original size:30 final size:30
Alignment explanation
Indices: 74627591--74627667 Score: 120
Period size: 29 Copynumber: 2.6 Consensus size: 30
74627581 CTTTGGCTAC
*
74627591 CAAATTATGAAAAGGGATGGTGACGACCAT
1 CAAATAATGAAAAGGGATGGTGACGACCAT
*
74627621 CGAATAATGAAAA-GGATGGTGACGACCAT
1 CAAATAATGAAAAGGGATGGTGACGACCAT
*
74627650 CAAATTATGAAAAGGGAT
1 CAAATAATGAAAAGGGAT
74627668 AGCTTCGGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
29 27 0.64
30 15 0.36
ACGTcount: A:0.43, C:0.12, G:0.26, T:0.19
Consensus pattern (30 bp):
CAAATAATGAAAAGGGATGGTGACGACCAT
Found at i:74627691 original size:30 final size:30
Alignment explanation
Indices: 74627655--74627727 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
74627645 ACCATCAAAT
* *
74627655 TATGAAAAGGGATAGCTTCGGCTGTCGAAC
1 TATGAAAAGGGATAACTTCGGCTATCGAAC
* * *
74627685 TATGAAAAGGGATAACTTTGGTTATCGAAT
1 TATGAAAAGGGATAACTTCGGCTATCGAAC
*
74627715 TACGAAAAGGGAT
1 TATGAAAAGGGAT
74627728 GGGTCAACCA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.36, C:0.11, G:0.27, T:0.26
Consensus pattern (30 bp):
TATGAAAAGGGATAACTTCGGCTATCGAAC
Found at i:74638768 original size:37 final size:37
Alignment explanation
Indices: 74638727--74638800 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
74638717 AAATTCCAAC
74638727 ATAAATGCTCACAATTTTTACCCTATTACAAATCAGT
1 ATAAATGCTCACAATTTTTACCCTATTACAAATCAGT
74638764 ATAAATGCTCACAATTTTTACCCTATTACAAATCAGT
1 ATAAATGCTCACAATTTTTACCCTATTACAAATCAGT
74638801 CATTTTCCTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.35
Consensus pattern (37 bp):
ATAAATGCTCACAATTTTTACCCTATTACAAATCAGT
Found at i:74639730 original size:17 final size:17
Alignment explanation
Indices: 74639700--74639733 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
74639690 TTAATGATTG
*
74639700 GACGATTAAATTCAAAT
1 GACGACTAAATTCAAAT
*
74639717 GACGACTAAGTTCAAAT
1 GACGACTAAATTCAAAT
74639734 CTCTTCATAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (17 bp):
GACGACTAAATTCAAAT
Found at i:74640354 original size:15 final size:15
Alignment explanation
Indices: 74640334--74640380 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
74640324 AAAACTATGT
74640334 TTAAAAAATTAAGTG
1 TTAAAAAATTAAGTG
*
74640349 TTAAAAAAATAAGT-
1 TTAAAAAATTAAGTG
*
74640363 ATAAAAACATTAAGTG
1 TTAAAAA-ATTAAGTG
74640379 TT
1 TT
74640381 GAATTTAAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
14 6 0.23
15 19 0.73
16 1 0.04
ACGTcount: A:0.55, C:0.02, G:0.11, T:0.32
Consensus pattern (15 bp):
TTAAAAAATTAAGTG
Found at i:74640355 original size:16 final size:16
Alignment explanation
Indices: 74640331--74640380 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
74640321 AATAAAACTA
*
74640331 TGTTTAAAAAATTAAG
1 TGTTAAAAAAATTAAG
74640347 TGTTAAAAAAA-TAAG
1 TGTTAAAAAAATTAAG
* *
74640362 T-ATAAAAACATTAAG
1 TGTTAAAAAAATTAAG
74640377 TGTT
1 TGTT
74640381 GAATTTAAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 7 0.25
15 10 0.36
16 11 0.39
ACGTcount: A:0.52, C:0.02, G:0.12, T:0.34
Consensus pattern (16 bp):
TGTTAAAAAAATTAAG
Found at i:74642515 original size:39 final size:36
Alignment explanation
Indices: 74642435--74642515 Score: 90
Period size: 39 Copynumber: 2.2 Consensus size: 36
74642425 CTTGTTGAAG
*
74642435 AAATTAGCGAGCTTTAAAAACGACAGTCGTGATCGT
1 AAATCAGCGAGCTTTAAAAACGACAGTCGTGATCGT
* ** *
74642471 GAATCAGCGAGCTGTTAGAAAATCGAGGGTCGTGATCTT
1 AAATCAGCGAGCT-TTA-AAAA-CGACAGTCGTGATCGT
74642510 AAATCA
1 AAATCA
74642516 ATAGCCCATA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
36 11 0.31
37 3 0.08
38 4 0.11
39 18 0.50
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.25
Consensus pattern (36 bp):
AAATCAGCGAGCTTTAAAAACGACAGTCGTGATCGT
Found at i:74642888 original size:228 final size:227
Alignment explanation
Indices: 74642581--74643122 Score: 674
Period size: 228 Copynumber: 2.4 Consensus size: 227
74642571 GGATCGTGAC
* * * * *
74642581 CTTAAATCAGCGAACCGTAAAAATAACAGTTGTGAACATAGGTCAACAAGCTATTAGAAAATCGA
1 CTTAAATCAGCGAACCGAAAAAATATCAATTGTGAACATAGGTCAACAAGTTGTTAGAAAATCGA
* * * * *
74642646 GGGTCGCGATCTTAAAGCAGCGGA-TAGTAAAAAATATCAGA-TGTGAACGTAGGTCAACAAGCT
66 GGGTCACAATCTTAAATCAGCGGACCA-TAAAAAATATCA-ACTATGAACGTAGGTCAACAAGCT
** *
74642709 ATTAGAAAACCGAGGGTCGCAATATTAAATCAGTGGACCGTAAAAAATAACAACTGTGAACGTAG
129 ATTAGAAAACCGAGGGTCGCAATATTAAATCAGCAGACCATAAAAAATAACAACTGTGAACGTAG
* * *
74642774 GTAAGAAAGCTGTTAAAAAACCAAGGGTCGCGAT
194 GTAAGAAAGCTGTTAAAAAACAAAAGGTCACGAT
* *
74642808 CTTAAATCAGCGGACCGCAAAAAATATCAATTGTGAACGTAGGTCAACAAGTTGTTAGAAAATCG
1 CTTAAATCAGCGAACCG-AAAAAATATCAATTGTGAACATAGGTCAACAAGTTGTTAGAAAATCG
* ***
74642873 AGGGTCACAATCTTAAATAAGCGGACCATAAAAAATATCAACTATGAACGTAGGTCAGTGAGCTA
65 AGGGTCACAATCTTAAATCAGCGGACCATAAAAAATATCAACTATGAACGTAGGTCAACAAGCTA
* * ** * * *
74642938 TTAGAAAATCGAGGGTTGTGATCTTAAATCAGCAGACCATAAAAAATATCAGCTGTGAACGTAGG
130 TTAGAAAACCGAGGGTCGCAATATTAAATCAGCAGACCATAAAAAATAACAACTGTGAACGTAGG
* ** *
74643003 TTAGCGAGCTGTTAGAAAACAAAAGGTCACGAT
195 TAAGAAAGCTGTTAAAAAACAAAAGGTCACGAT
* * * * * * *
74643036 CTTAAATCAGCAAACCGTAAAAAATATCAACTGTGAACATAGGTTAGCGAGTTGTTAGAAAACCA
1 CTTAAATCAGCGAACCG-AAAAAATATCAATTGTGAACATAGGTCAACAAGTTGTTAGAAAATCG
74643101 AGGGTCACAATCTTAAATCAGC
65 AGGGTCACAATCTTAAATCAGC
74643123 AAGCCTTAGT
Statistics
Matches: 268, Mismatches: 44, Indels: 5
0.85 0.14 0.02
Matches are distributed among these distances:
227 17 0.06
228 250 0.93
229 1 0.00
ACGTcount: A:0.41, C:0.16, G:0.21, T:0.22
Consensus pattern (227 bp):
CTTAAATCAGCGAACCGAAAAAATATCAATTGTGAACATAGGTCAACAAGTTGTTAGAAAATCGA
GGGTCACAATCTTAAATCAGCGGACCATAAAAAATATCAACTATGAACGTAGGTCAACAAGCTAT
TAGAAAACCGAGGGTCGCAATATTAAATCAGCAGACCATAAAAAATAACAACTGTGAACGTAGGT
AAGAAAGCTGTTAAAAAACAAAAGGTCACGAT
Found at i:74643124 original size:76 final size:76
Alignment explanation
Indices: 74642474--74643122 Score: 604
Period size: 76 Copynumber: 8.6 Consensus size: 76
74642464 TGATCGTGAA
* * * *** * * *
74642474 TCAGCGAGCTGTTAGAAAATCGAGGGTCGTGATCTTAAATCAATAGCCCAT-AAAAATATCAATT
1 TCAGCAAGCTGTTAGAAAACCGAGGGTCGCGATCTTAAATCAGCGGACCGTAAAAAATATCAACT
*
74642538 GTGAACATAGG
66 GTGAACGTAGG
* * * * * * * * * * **
74642549 TCAACGAGCTATCAGAAAA-CTAGGATCGTGACCTTAAATCAGCGAACCGT-AAAAATAACAGTT
1 TCAGCAAGCTGTTAGAAAACCGAGGGTCGCGATCTTAAATCAGCGGACCGTAAAAAATATCAACT
*
74642612 GTGAACATAGG
66 GTGAACGTAGG
* * * * **
74642623 TCAACAAGCTATTAGAAAATCGAGGGTCGCGATCTTAAAGCAGCGGATAGTAAAAAATATCAGA-
1 TCAGCAAGCTGTTAGAAAACCGAGGGTCGCGATCTTAAATCAGCGGACCGTAAAAAATATCA-AC
74642687 TGTGAACGTAGG
65 TGTGAACGTAGG
* * * * * *
74642699 TCAACAAGCTATTAGAAAACCGAGGGTCGCAATATTAAATCAGTGGACCGTAAAAAATAACAACT
1 TCAGCAAGCTGTTAGAAAACCGAGGGTCGCGATCTTAAATCAGCGGACCGTAAAAAATATCAACT
74642764 GTGAACGTAGG
66 GTGAACGTAGG
* * * * * *
74642775 TAAGAAAGCTGTTAAAAAACCAAGGGTCGCGATCTTAAATCAGCGGACCGCAAAAAATATCAATT
1 TCAGCAAGCTGTTAGAAAACCGAGGGTCGCGATCTTAAATCAGCGGACCGTAAAAAATATCAACT
74642840 GTGAACGTAGG
66 GTGAACGTAGG
* * * * * * *
74642851 TCAACAAGTTGTTAGAAAATCGAGGGTCACAATCTTAAATAAGCGGACCATAAAAAATATCAACT
1 TCAGCAAGCTGTTAGAAAACCGAGGGTCGCGATCTTAAATCAGCGGACCGTAAAAAATATCAACT
*
74642916 ATGAACGTAGG
66 GTGAACGTAGG
** * * * * * * *
74642927 TCAGTGAGCTATTAGAAAATCGAGGGTTGTGATCTTAAATCAGCAGACCATAAAAAATATCAGCT
1 TCAGCAAGCTGTTAGAAAACCGAGGGTCGCGATCTTAAATCAGCGGACCGTAAAAAATATCAACT
74642992 GTGAACGTAGG
66 GTGAACGTAGG
* * ** * * **
74643003 TTAGCGAGCTGTTAGAAAACAAAAGGTCACGATCTTAAATCAGCAAACCGTAAAAAATATCAACT
1 TCAGCAAGCTGTTAGAAAACCGAGGGTCGCGATCTTAAATCAGCGGACCGTAAAAAATATCAACT
*
74643068 GTGAACATAGG
66 GTGAACGTAGG
* * * * * *
74643079 TTAGCGAGTTGTTAGAAAACCAAGGGTCACAATCTTAAATCAGC
1 TCAGCAAGCTGTTAGAAAACCGAGGGTCGCGATCTTAAATCAGC
74643123 AAGCCTTAGT
Statistics
Matches: 478, Mismatches: 92, Indels: 7
0.83 0.16 0.01
Matches are distributed among these distances:
74 61 0.13
75 40 0.08
76 377 0.79
ACGTcount: A:0.40, C:0.16, G:0.21, T:0.22
Consensus pattern (76 bp):
TCAGCAAGCTGTTAGAAAACCGAGGGTCGCGATCTTAAATCAGCGGACCGTAAAAAATATCAACT
GTGAACGTAGG
Found at i:74643523 original size:26 final size:24
Alignment explanation
Indices: 74643479--74643528 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
74643469 ATTTGTTTTA
*
74643479 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
74643503 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
74643529 TTAATGAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:74647336 original size:15 final size:16
Alignment explanation
Indices: 74647318--74647350 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
74647308 TTGAATATGA
74647318 AAATATAT-TATATAT
1 AAATATATGTATATAT
*
74647333 AAATATATGTGTATAT
1 AAATATATGTATATAT
74647349 AA
1 AA
74647351 TTAAAATTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (16 bp):
AAATATATGTATATAT
Found at i:74647716 original size:54 final size:52
Alignment explanation
Indices: 74647656--74647766 Score: 143
Period size: 53 Copynumber: 2.1 Consensus size: 52
74647646 AATGAAAAAT
**
74647656 AATGAAAACTT-GATGTGATTAAATTGTGTTATTATAAAAGTTAAAGATATTAAA
1 AATGAAAACTTAG-TGTGATT-AATTGTACTATTATAAAAGTTAAA-ATATTAAA
* * *
74647710 AATGAAAAGTTAGTGTGATTAATTTTACTATTATAAAAGTTAGAATATTAAA
1 AATGAAAACTTAGTGTGATTAATTGTACTATTATAAAAGTTAAAATATTAAA
74647762 AATGA
1 AATGA
74647767 CTGTTAATTT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
52 13 0.25
53 20 0.39
54 17 0.33
55 1 0.02
ACGTcount: A:0.47, C:0.02, G:0.14, T:0.37
Consensus pattern (52 bp):
AATGAAAACTTAGTGTGATTAATTGTACTATTATAAAAGTTAAAATATTAAA
Found at i:74651469 original size:21 final size:21
Alignment explanation
Indices: 74651445--74651514 Score: 74
Period size: 21 Copynumber: 3.4 Consensus size: 21
74651435 TCTGATTAGG
74651445 ATTCAAACAAACACTCAATGA
1 ATTCAAACAAACACTCAATGA
* * *
74651466 ATTCAAAC---CATCTGATTAGG
1 ATTCAAACAAACA-CTCAAT-GA
74651486 ATTCAAACAAACACTCAATGA
1 ATTCAAACAAACACTCAATGA
74651507 ATTCAAAC
1 ATTCAAAC
74651515 CAGGAATTTG
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
18 2 0.05
19 4 0.11
20 9 0.24
21 17 0.45
22 4 0.11
23 2 0.05
ACGTcount: A:0.47, C:0.23, G:0.07, T:0.23
Consensus pattern (21 bp):
ATTCAAACAAACACTCAATGA
Found at i:74651482 original size:41 final size:41
Alignment explanation
Indices: 74651435--74651516 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
74651425 TTCATTAGGG
74651435 TCTGATTAGGATTCAAACAAACACTCAATGAATTCAAACCA
1 TCTGATTAGGATTCAAACAAACACTCAATGAATTCAAACCA
74651476 TCTGATTAGGATTCAAACAAACACTCAATGAATTCAAACCA
1 TCTGATTAGGATTCAAACAAACACTCAATGAATTCAAACCA
74651517 GGAATTTGTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.44, C:0.22, G:0.10, T:0.24
Consensus pattern (41 bp):
TCTGATTAGGATTCAAACAAACACTCAATGAATTCAAACCA
Found at i:74654764 original size:23 final size:23
Alignment explanation
Indices: 74654734--74654780 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
74654724 TTAACATAGT
*
74654734 ACATGGCATCATAAAGAAATATG
1 ACATGGCATCATAAAGAAAAATG
74654757 ACATGGCATCATAAAGAAAAATG
1 ACATGGCATCATAAAGAAAAATG
74654780 A
1 A
74654781 ACAACCATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (23 bp):
ACATGGCATCATAAAGAAAAATG
Found at i:74656697 original size:15 final size:15
Alignment explanation
Indices: 74656679--74656726 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
74656669 TTTTCTCGAG
74656679 TTATATTTTAATTAT
1 TTATATTTTAATTAT
* *
74656694 TTATATTTAAAATA-
1 TTATATTTTAATTAT
* *
74656708 TTATGTTTTAGTTAT
1 TTATATTTTAATTAT
74656723 TTAT
1 TTAT
74656727 GTTATTATTT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
14 10 0.38
15 16 0.62
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (15 bp):
TTATATTTTAATTAT
Found at i:74656874 original size:14 final size:15
Alignment explanation
Indices: 74656855--74656888 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
74656845 GAAAATAATT
74656855 TTTTAATTAA-AAAA
1 TTTTAATTAATAAAA
74656869 TTTTAATTAATTAAAA
1 TTTTAATTAA-TAAAA
74656885 TTTT
1 TTTT
74656889 CAAACCTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 10 0.56
16 8 0.44
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TTTTAATTAATAAAA
Found at i:74658341 original size:36 final size:34
Alignment explanation
Indices: 74658309--74658374 Score: 98
Period size: 36 Copynumber: 1.9 Consensus size: 34
74658299 TGAAAATATA
*
74658309 TAAAATTTTAT-AATATATAAATTAATAAAAAAT
1 TAAAATTTTATAAATATATAAATAAATAAAAAAT
74658342 TAAAATTTTATAAAAATATATAAATAAATAAAA
1 TAAAATTTTAT--AAATATATAAATAAATAAAA
74658375 GAACTGAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 11 0.38
36 18 0.62
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (34 bp):
TAAAATTTTATAAATATATAAATAAATAAAAAAT
Found at i:74660712 original size:40 final size:38
Alignment explanation
Indices: 74660632--74660730 Score: 92
Period size: 40 Copynumber: 2.5 Consensus size: 38
74660622 CACACTATCT
* * *
74660632 CCAACCAACCCAACACACC-ATGTGGGGATAAAATCGAC
1 CCAACC-ACCCTACACACCAATGTGGGGACAAAATCAAC
* *
74660670 CCAACCTACCCTACACACCAAGTTTGGGGACATAATCAAC
1 CCAACC-ACCCTACACACCAA-TGTGGGGACAAAATCAAC
**
74660710 CCATGCAGCCCTACACACCAA
1 CCAACCA-CCCTACACACCAA
74660731 AAGGTACCGT
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
38 17 0.34
39 2 0.04
40 31 0.62
ACGTcount: A:0.36, C:0.37, G:0.13, T:0.13
Consensus pattern (38 bp):
CCAACCACCCTACACACCAATGTGGGGACAAAATCAAC
Found at i:74663574 original size:51 final size:54
Alignment explanation
Indices: 74663514--74663632 Score: 147
Period size: 51 Copynumber: 2.3 Consensus size: 54
74663504 AAGTGTCGCC
*
74663514 TTACTGTTACTGTTCTGGATTCGTTCCGAAGAGGT-A-CT-TCGTACC-TTACTG
1 TTACTGTTACTGTTCTGGATTCGTTCCGAAGAGGTAATCTGT-GTACCGCTACTG
** ** *
74663565 TTACTGTTACTAATCTGGATTTTTTCCGATGAGGTAATCTGTGTACCGCTACTG
1 TTACTGTTACTGTTCTGGATTCGTTCCGAAGAGGTAATCTGTGTACCGCTACTG
74663619 TTACTGTTACTGTT
1 TTACTGTTACTGTT
74663633 ACCGTTACAG
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
51 30 0.54
52 1 0.02
53 7 0.12
54 18 0.32
ACGTcount: A:0.18, C:0.19, G:0.20, T:0.42
Consensus pattern (54 bp):
TTACTGTTACTGTTCTGGATTCGTTCCGAAGAGGTAATCTGTGTACCGCTACTG
Found at i:74663777 original size:18 final size:18
Alignment explanation
Indices: 74663753--74663839 Score: 104
Period size: 18 Copynumber: 4.8 Consensus size: 18
74663743 AAAGGTATTA
74663753 AATAACTGACTGTTACTG
1 AATAACTGACTGTTACTG
* * *
74663771 GATAACTGATTGCTACTG
1 AATAACTGACTGTTACTG
*
74663789 AATAATTGACTGTTACTG
1 AATAACTGACTGTTACTG
* *
74663807 AATAATTTA-TCGTTACTG
1 AATAACTGACT-GTTACTG
74663825 AATAACTGACTGTTA
1 AATAACTGACTGTTA
74663840 AAGAGTGACT
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
17 1 0.02
18 55 0.96
19 1 0.02
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (18 bp):
AATAACTGACTGTTACTG
Found at i:74663793 original size:36 final size:36
Alignment explanation
Indices: 74663753--74663839 Score: 120
Period size: 36 Copynumber: 2.4 Consensus size: 36
74663743 AAAGGTATTA
* *
74663753 AATAACTGACTGTTACTGGATAACTGATTGCTACTG
1 AATAACTGACTGTTACTGAATAACTGATCGCTACTG
* * * *
74663789 AATAATTGACTGTTACTGAATAATTTATCGTTACTG
1 AATAACTGACTGTTACTGAATAACTGATCGCTACTG
74663825 AATAACTGACTGTTA
1 AATAACTGACTGTTA
74663840 AAGAGTGACT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 44 1.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (36 bp):
AATAACTGACTGTTACTGAATAACTGATCGCTACTG
Found at i:74663899 original size:18 final size:18
Alignment explanation
Indices: 74663757--74663901 Score: 62
Period size: 18 Copynumber: 8.1 Consensus size: 18
74663747 GTATTAAATA
* * *
74663757 ACTGACTGTTACTGGATA
1 ACTGAATGTTACTGAATG
* * *
74663775 ACTGATTGCTACTGAATA
1 ACTGAATGTTACTGAATG
* *
74663793 ATTGACTGTTACTGAAT-
1 ACTGAATGTTACTGAATG
* ** *
74663810 AATTTATCGTTACTGAATA
1 ACTGAAT-GTTACTGAATG
* ** *
74663829 ACTGACTGTTAAAGAGTG
1 ACTGAATGTTACTGAATG
* * *
74663847 ACTGAATATTATTGAACG
1 ACTGAATGTTACTGAATG
74663865 ACT-AATTGTTA-TCGAATG
1 ACTGAA-TGTTACT-GAATG
*
74663883 ATTGAATGTTACTGAATG
1 ACTGAATGTTACTGAATG
74663901 A
1 A
74663902 AACTGATAAA
Statistics
Matches: 94, Mismatches: 27, Indels: 12
0.71 0.20 0.09
Matches are distributed among these distances:
17 6 0.06
18 82 0.87
19 6 0.06
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.36
Consensus pattern (18 bp):
ACTGAATGTTACTGAATG
Found at i:74665082 original size:45 final size:45
Alignment explanation
Indices: 74664997--74665200 Score: 288
Period size: 45 Copynumber: 4.6 Consensus size: 45
74664987 GCATTTCACT
* * * *
74664997 TGCTAGGCTCGAA-GCCCG-ATA-TCATTTCACCGGTATTATAGCC
1 TGCTAGGCTCAAAGGCCCGAATAGT-ATCTCACCGGCATCATAGCC
* * * * *
74665040 TTCTAGGCTCGAAGGCCCGAATAGTATCTTACCGGCATTATAGCT
1 TGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATCATAGCC
74665085 TGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATCATAGCC
1 TGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATCATAGCC
*
74665130 TGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGTATCATAGCC
1 TGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATCATAGCC
74665175 TGCTAGGCTCAAAGGCCCGAATAGTA
1 TGCTAGGCTCAAAGGCCCGAATAGTA
74665201 CCGTATGATA
Statistics
Matches: 147, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
43 12 0.08
44 5 0.03
45 129 0.88
46 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (45 bp):
TGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATCATAGCC
Found at i:74667847 original size:17 final size:17
Alignment explanation
Indices: 74667808--74667849 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
74667798 TATTTAATTG
* *
74667808 TATATTTTTTAAATATT
1 TATATTTTTTAAAAATA
*
74667825 TTTATTTTTTAAAAATA
1 TATATTTTTTAAAAATA
74667842 TATATTTT
1 TATATTTT
74667850 CCACATGACA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TATATTTTTTAAAAATA
Found at i:74667885 original size:23 final size:23
Alignment explanation
Indices: 74667850--74667902 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
74667840 TATATATTTT
74667850 CCACATGACATACTGAGAGGTTG
1 CCACATGACATACTGAGAGGTTG
**
74667873 CCACATGGTATACTGAGAGGTTG
1 CCACATGACATACTGAGAGGTTG
*
74667896 TCACATG
1 CCACATG
74667903 TCACCGCTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (23 bp):
CCACATGACATACTGAGAGGTTG
Found at i:74676486 original size:43 final size:43
Alignment explanation
Indices: 74676437--74676593 Score: 165
Period size: 43 Copynumber: 3.7 Consensus size: 43
74676427 TATCCTAGAT
* * *
74676437 ATGGTCTTACATGTTATCACATATCGATGCCACTGTCCTAGAC
1 ATGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAGAC
* *** * *
74676480 AGGGTCTTACACAAAATCGA-TTAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATC-ACATATCGATGCCAATGTCCCAGAC
* * *
74676523 ATGGTCCTACATGTAATCTCA-ATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCACATAT-CGATGCCAATGTCCCAGAC
*
74676566 ATGGTCTTACATGTAATCACATCTCGAT
1 ATGGTCTTACATGTAATCACATATCGAT
74676594 AACCTAATGT
Statistics
Matches: 88, Mismatches: 22, Indels: 8
0.75 0.19 0.07
Matches are distributed among these distances:
42 1 0.01
43 85 0.97
44 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAGAC
Found at i:74681638 original size:28 final size:28
Alignment explanation
Indices: 74681607--74681662 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
74681597 AAATCAAGTT
*
74681607 GACATACTCATAGCCAAAAATAAAATGA
1 GACATACTCATAACCAAAAATAAAATGA
74681635 GACATACTCATAACCAAAAATAAAATGA
1 GACATACTCATAACCAAAAATAAAATGA
74681663 ACACGAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.55, C:0.18, G:0.09, T:0.18
Consensus pattern (28 bp):
GACATACTCATAACCAAAAATAAAATGA
Found at i:74689603 original size:48 final size:48
Alignment explanation
Indices: 74689532--74689993 Score: 531
Period size: 48 Copynumber: 9.6 Consensus size: 48
74689522 TATATGTACT
* * **
74689532 AGTGTAAGACCATGTCTAGGACATGGCGTTAGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
* * *
74689580 AGTGTAAGGCCATGTTTGGGACATGGCATTGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
** *
74689628 AGTGTAAGATTATGTCTGGGACATGGTATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
* * *
74689676 AGTGTAAGACCATGTCTGGGACATAGCATCGGCCGCATTATGAGAGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
* *
74689724 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGCGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
* * * **
74689772 AGTGTAAGACCATGT-TTGGAGCATGGCATCGACAATGTTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGA-CATGGCATCGGCCACATTATGAGAGCC
* * *
74689820 AGAGTAAGACCATGTATGGGACATGGCATCGG---CATTGAGATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATT---ATGAGAGCC
* * ** *
74689868 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGA-CGTGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-ATTATGAGAGCC
* * * * *
74689916 AATGTAAGTCCATGTCTGGGACATGGCATCGGCCTCGA-CATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-ATTATGAGAGCC
74689964 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
74689994 AGCAATTTAC
Statistics
Matches: 357, Mismatches: 48, Indels: 18
0.84 0.11 0.04
Matches are distributed among these distances:
45 2 0.01
47 4 0.01
48 345 0.97
49 4 0.01
51 1 0.00
52 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
Found at i:74697525 original size:48 final size:48
Alignment explanation
Indices: 74697454--74697819 Score: 427
Period size: 48 Copynumber: 7.6 Consensus size: 48
74697444 TATGTGTGCT
74697454 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
* *
74697502 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCACATTATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
* *
74697550 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGCGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
* * * * ** *
74697598 AGTGTAAGACCATGT-TTGAAGCATGGCATCGACAATGTTATGTGAGCC
1 AGTGTAAGACCATGTCTGGGA-CATGGCATCGGCCACATTATGAGAGCC
* *
74697646 AGAGTAAGACCATGTCTGGGACATGGCATCGG---CATTGTGACGAGAACC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGA-GAG--CC
* ** ** *
74697694 AGTGTAAGACCATGTCTGGGACATTGCATCGGCTTCGA-CGTGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-ATTATGAGAGCC
* * ** *
74697742 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCAACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
*
74697790 AATGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
74697820 AGTAATTTAC
Statistics
Matches: 278, Mismatches: 30, Indels: 20
0.85 0.09 0.06
Matches are distributed among these distances:
45 4 0.01
46 3 0.01
47 4 0.01
48 256 0.92
49 3 0.01
50 3 0.01
51 4 0.01
52 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
Found at i:74704157 original size:10 final size:10
Alignment explanation
Indices: 74704142--74704170 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
74704132 GCGCGATAGA
74704142 AGAGAGAAAG
1 AGAGAGAAAG
74704152 AGAGAGAAAG
1 AGAGAGAAAG
74704162 AGAGAGAAA
1 AGAGAGAAA
74704171 TAGTTAACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (10 bp):
AGAGAGAAAG
Found at i:74704701 original size:12 final size:12
Alignment explanation
Indices: 74704684--74704713 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
74704674 ACCTCTCCTC
74704684 CACTCCTTAATT
1 CACTCCTTAATT
74704696 CACTCCTTAATT
1 CACTCCTTAATT
*
74704708 CTCTCC
1 CACTCC
74704714 CCAAATTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (12 bp):
CACTCCTTAATT
Found at i:74707946 original size:90 final size:91
Alignment explanation
Indices: 74707851--74708032 Score: 357
Period size: 90 Copynumber: 2.0 Consensus size: 91
74707841 AAAATTATGG
74707851 TTTTGATATCAAACTTGTAAATTTTAAAATGTCAAGATAATACTTCAGTTTAAGGAGACAACCTA
1 TTTTGATATCAAACTTGTAAATTTTAAAATGTCAAGATAATACTTCAGTTTAAGGAGACAACCTA
74707916 AAATAATAATTTCT-AAAAAAACTTA
66 AAATAATAATTTCTAAAAAAAACTTA
74707941 TTTTGATATCAAACTTGTAAATTTTAAAATGTCAAGATAATACTTCAGTTTAAGGAGACAACCTA
1 TTTTGATATCAAACTTGTAAATTTTAAAATGTCAAGATAATACTTCAGTTTAAGGAGACAACCTA
74708006 AAATAATAATTTCTAAAAAAAACTTA
66 AAATAATAATTTCTAAAAAAAACTTA
74708032 T
1 T
74708033 CATGCTGGAC
Statistics
Matches: 91, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
90 79 0.87
91 12 0.13
ACGTcount: A:0.46, C:0.11, G:0.09, T:0.35
Consensus pattern (91 bp):
TTTTGATATCAAACTTGTAAATTTTAAAATGTCAAGATAATACTTCAGTTTAAGGAGACAACCTA
AAATAATAATTTCTAAAAAAAACTTA
Found at i:74713455 original size:21 final size:21
Alignment explanation
Indices: 74713430--74713469 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
74713420 ATATAATGAG
*
74713430 TATATCATGCGCATCTCATAA
1 TATATCATGCGCATATCATAA
*
74713451 TATATCATGTGCATATCAT
1 TATATCATGCGCATATCAT
74713470 GTCATATCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.38
Consensus pattern (21 bp):
TATATCATGCGCATATCATAA
Found at i:74713475 original size:10 final size:10
Alignment explanation
Indices: 74713452--74713487 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
74713442 ATCTCATAAT
74713452 ATATCATGTGC
1 ATATCATGT-C
74713463 ATATCATGTC
1 ATATCATGTC
74713473 ATATCATGT-
1 ATATCATGTC
74713482 ATATCA
1 ATATCA
74713488 AAATCTCATG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 6 0.24
10 10 0.40
11 9 0.36
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (10 bp):
ATATCATGTC
Found at i:74730060 original size:24 final size:25
Alignment explanation
Indices: 74730033--74730085 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
74730023 GCCTAGCCTC
74730033 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
74730057 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
74730082 TTTT
1 TTTT
74730086 GCACTTCCTC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
24 6 0.22
25 21 0.78
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:74730378 original size:11 final size:10
Alignment explanation
Indices: 74730364--74730400 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
74730354 CATTTCATAA
74730364 CATATCATGT
1 CATATCATGT
74730374 GCATATCATGT
1 -CATATCATGT
74730385 CATATCATGT
1 CATATCATGT
74730395 -ATATCA
1 CATATCA
74730401 AAATCTCATG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 6 0.23
10 10 0.38
11 10 0.38
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (10 bp):
CATATCATGT
Found at i:74730382 original size:21 final size:21
Alignment explanation
Indices: 74730344--74730424 Score: 62
Period size: 21 Copynumber: 4.0 Consensus size: 21
74730334 TATAATGAGT
* *
74730344 ATATCATGCACATTTCATAAC
1 ATATCATGTACATATCATAAC
* **
74730365 ATATCATGTGCATATCATGTC
1 ATATCATGTACATATCATAAC
74730386 ATATCATGT--ATATCA-AA-
1 ATATCATGTACATATCATAAC
*
74730403 ATCTCATGTATCATATCCATAA
1 ATATCATGTA-CATAT-CATAA
74730425 TTGAACCCTA
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
17 8 0.17
19 6 0.13
20 4 0.09
21 27 0.57
22 2 0.04
ACGTcount: A:0.37, C:0.20, G:0.07, T:0.36
Consensus pattern (21 bp):
ATATCATGTACATATCATAAC
Found at i:74749275 original size:39 final size:40
Alignment explanation
Indices: 74749174--74749356 Score: 216
Period size: 39 Copynumber: 4.7 Consensus size: 40
74749164 TCGAATGATG
* * *
74749174 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
74749213 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
74749254 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA-
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
74749292 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
** *
74749331 AACGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74749357 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
38 11 0.09
39 71 0.57
40 33 0.26
41 10 0.08
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:74749363 original size:78 final size:78
Alignment explanation
Indices: 74749227--74749389 Score: 206
Period size: 78 Copynumber: 2.1 Consensus size: 78
74749217 GGACTAAGAT
** **
74749227 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTA-CTA
1 CCGAAGGCATTTGTGCGAGTTACTAATAACGGGCTAAGCCCGAAGGCATTGGAACGAG-TAGCTA
*
74749291 -ATCCGGGTTAAGTC
65 TATCC-GGTTAAATC
* *
74749305 CCGAAGGCATTTGTGCGAGTTACT-ATAACGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTA
1 CCGAAGGCATTTGTGCGAGTTACTAATAACGGGCTAAG-CCCGAAGGCATTGGAACGAGTAGCTA
*
74749369 TATCCGGTTAAATT
65 TATCCGGTTAAATC
74749383 CCGAAGG
1 CCGAAGG
74749390 TACGTGATTC
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
77 12 0.16
78 58 0.78
79 4 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGTTACTAATAACGGGCTAAGCCCGAAGGCATTGGAACGAGTAGCTAT
ATCCGGTTAAATC
Found at i:74751379 original size:26 final size:26
Alignment explanation
Indices: 74751346--74751399 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 26
74751336 TGTTACATAT
*
74751346 AACAATAAAT-TGCAGAATAAAATAA
1 AACAATAAATCTGCAAAATAAAATAA
*
74751371 AACATATAAATCTGGAAAATAAAATAA
1 AACA-ATAAATCTGCAAAATAAAATAA
74751398 AA
1 AA
74751400 ACAAAAACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.16
26 6 0.24
27 15 0.60
ACGTcount: A:0.65, C:0.07, G:0.07, T:0.20
Consensus pattern (26 bp):
AACAATAAATCTGCAAAATAAAATAA
Found at i:74759651 original size:31 final size:31
Alignment explanation
Indices: 74759608--74759671 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
74759598 CCTTTTCATA
*
74759608 TTTCATAATTCATAACAGTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
74759639 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
74759670 TT
1 TT
74759672 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:74759916 original size:24 final size:23
Alignment explanation
Indices: 74759883--74760005 Score: 183
Period size: 24 Copynumber: 5.2 Consensus size: 23
74759873 GGCCTAGCCT
*
74759883 CTTTTAATAACTGGGGCAAAAGC
1 CTTTTAATAACTGGGGCATAAGC
74759906 CTTTTTAATAACTGGGGCATAAGC
1 C-TTTTAATAACTGGGGCATAAGC
*
74759930 CCTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAG-C
*
74759954 CTTTTGATAACTGGGGCATAAGC
1 CTTTTAATAACTGGGGCATAAGC
*
74759977 CCTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAG-C
74760001 CTTTT
1 CTTTT
74760006 GCACTTCCTC
Statistics
Matches: 90, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
23 42 0.47
24 48 0.53
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.30
Consensus pattern (23 bp):
CTTTTAATAACTGGGGCATAAGC
Found at i:74759939 original size:23 final size:23
Alignment explanation
Indices: 74759885--74760004 Score: 195
Period size: 23 Copynumber: 5.1 Consensus size: 23
74759875 CCTAGCCTCT
* *
74759885 TTTAATAACTGGGGCAAAAGCCTT
1 TTTAATAACTGGGGCATAAGCC-C
74759909 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
74759932 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
74759955 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
74759979 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
74760002 TTT
1 TTT
74760005 TGCACTTCCT
Statistics
Matches: 91, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
23 48 0.53
24 43 0.47
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:74759964 original size:47 final size:47
Alignment explanation
Indices: 74759885--74760006 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
74759875 CCTAGCCTCT
* * *
74759885 TTTAATAACTGGGGCAAAAGCCTTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
74759932 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
74759979 TTTAATAACTGGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTG
74760007 CACTTCCTCC
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.30
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:74760100 original size:19 final size:20
Alignment explanation
Indices: 74760051--74760120 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
74760041 GCATTTATGA
*
74760051 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
74760071 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
74760091 A-ATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
74760110 ACATATCATGT
1 ACATATCATGT
74760121 TTATCAAAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
19 18 0.39
20 28 0.61
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:74760196 original size:25 final size:24
Alignment explanation
Indices: 74760157--74760204 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
74760147 ATATATAAAC
* * *
74760157 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAATGATCA-TTTTA
74760182 CCTAGGGGCAAAATGATCATTTT
1 CCTAGGGGCAAAATGATCATTTT
74760205 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (24 bp):
CCTAGGGGCAAAATGATCATTTTA
Found at i:74765296 original size:34 final size:34
Alignment explanation
Indices: 74765255--74765319 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
74765245 GTATTAGTTG
*
74765255 GGCCTTAGCCC-ATTACAGTACCAGTATCAGTGTA
1 GGCCTTAGCCCAATT-CAGTAACAGTATCAGTGTA
*
74765289 GGCCTTAGCCCAATTTAGTAACAGTATCAGT
1 GGCCTTAGCCCAATTCAGTAACAGTATCAGT
74765320 ATCAGTACAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 25 0.89
35 3 0.11
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (34 bp):
GGCCTTAGCCCAATTCAGTAACAGTATCAGTGTA
Found at i:74767546 original size:27 final size:27
Alignment explanation
Indices: 74767462--74767575 Score: 83
Period size: 27 Copynumber: 4.3 Consensus size: 27
74767452 CCAAATTATT
*
74767462 GAAATACCCCTAG-TTGTAAAATTACC
1 GAAATACCCTTAGTTTGTAAAATTACC
* *** *
74767488 -AAAGTGCCCCCGGTTTATAAAATTACAC
1 GAAA-TACCCTTAGTTTGTAAAATTAC-C
*
74767516 -AAATATCCTT-GATTTGTAAAATTACC
1 GAAATACCCTTAG-TTTGTAAAATTACC
* * *
74767542 GAAATACCCTTAGTTTGCAAAACTACT
1 GAAATACCCTTAGTTTGTAAAATTACC
74767569 GAAATAC
1 GAAATAC
74767576 ACTCGACATG
Statistics
Matches: 69, Mismatches: 13, Indels: 11
0.74 0.14 0.12
Matches are distributed among these distances:
25 3 0.04
26 8 0.12
27 53 0.77
28 5 0.07
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (27 bp):
GAAATACCCTTAGTTTGTAAAATTACC
Found at i:74767638 original size:27 final size:27
Alignment explanation
Indices: 74767600--74767956 Score: 361
Period size: 27 Copynumber: 13.2 Consensus size: 27
74767590 ATTATCAAAG
74767600 TACCCTCGAATTACAAAAATTACTGTTT
1 TACCCTCGAATTAC-AAAATTACTGTTT
* *
74767628 TACCCTC-AATTTACAGAATTACTATTT
1 TACCCTCGAA-TTACAAAATTACTGTTT
* *
74767655 TACCCTCGATTTATAAAATTA-TCGTTT
1 TACCCTCGAATTACAAAATTACT-GTTT
*
74767682 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGAATTACAAAATTACTGTTT
* * * * *
74767709 TACCCTCGATTTATAGAATTATTATTT
1 TACCCTCGAATTACAAAATTACTGTTT
*
74767736 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGAATTACAAAATTACTGTTT
74767763 TACCCTC-AATTTACAAAATTACTGTTT
1 TACCCTCGAA-TTACAAAATTACTGTTT
* *
74767790 TACCATCG-ATTA-ATAGAATTACCGTTT
1 TACCCTCGAATTACA-A-AATTACTGTTT
* *
74767817 TACCCTCG-ATTGATAGAATTACTGTTT
1 TACCCTCGAATT-ACAAAATTACTGTTT
74767844 TACCCTC-AATTTACAAAATTACTGTTT
1 TACCCTCGAA-TTACAAAATTACTGTTT
* * *
74767871 TACTCTCGATTTACAAAATTACTATTT
1 TACCCTCGAATTACAAAATTACTGTTT
* *
74767898 TACCCTCGATTTACAGAATTA-TCGTTT
1 TACCCTCGAATTACAAAATTACT-GTTT
* * **
74767925 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGAATTACAAAATTACTGTTT
74767952 TACCC
1 TACCC
74767957 CTAGGGTGTT
Statistics
Matches: 281, Mismatches: 33, Indels: 31
0.81 0.10 0.09
Matches are distributed among these distances:
25 1 0.00
26 7 0.02
27 255 0.91
28 17 0.06
29 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGAATTACAAAATTACTGTTT
Found at i:74767684 original size:54 final size:54
Alignment explanation
Indices: 74767600--74767956 Score: 457
Period size: 54 Copynumber: 6.6 Consensus size: 54
74767590 ATTATCAAAG
* * * * *
74767600 TACCCTCGAATTACAAAAATTACTGTTTTACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTA-TAAAATTACTGTTTTACCCTCGATTTACAAAATTACTGTTT
74767655 TACCCTCGATTTATAAAATTA-TCGTTTTACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAAAATTACT-GTTTTACCCTCGATTTACAAAATTACTGTTT
* * *
74767709 TACCCTCGATTTATAGAATTATTATTTTACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACAAAATTACTGTTT
* * * * * * *
74767763 TACCCTCAATTTACAAAATTACTGTTTTACCATCGATTAATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACAAAATTACTGTTT
* * *
74767817 TACCCTCGATTGATAGAATTACTGTTTTACCCTCAATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACAAAATTACTGTTT
* * * *
74767871 TACTCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACAAAATTACT-GTTT
**
74767925 TACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTATAAAATTACTGTTTTACCC
74767957 CTAGGGTGTT
Statistics
Matches: 262, Mismatches: 37, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
53 2 0.01
54 247 0.94
55 13 0.05
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACAAAATTACTGTTT
Found at i:74767729 original size:81 final size:81
Alignment explanation
Indices: 74767600--74767956 Score: 484
Period size: 81 Copynumber: 4.4 Consensus size: 81
74767590 ATTATCAAAG
* *
74767600 TACCCTCGAATTACAAAAATTACTGTTTTACCCTCAATTTACAGAATTACTATTTTACCCTCGAT
1 TACCCTCGATTTAC-AAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGAT
*
74767665 TTATAAAATTA-TCGTTT
65 TTACAAAATTACT-GTTT
* *
74767682 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTATTATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
74767747 TACAAAATTACTGTTT
66 TACAAAATTACTGTTT
* * * * **
74767763 TACCCTCAATTTACAAAATTACTGTTTTACCATCGATTAATAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
* * *
74767828 GATAGAATTACTGTTT
66 TACAAAATTACTGTTT
* * *
74767844 TACCCTCAATTTACAAAATTACTGTTTTACTCTCGATTTACAAAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
*
74767909 TACAGAATTA-TCGTTT
66 TACAAAATTACT-GTTT
* **
74767925 TACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTACAAAATTACTGTTTTACCC
74767957 CTAGGGTGTT
Statistics
Matches: 245, Mismatches: 28, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
80 1 0.00
81 230 0.94
82 14 0.06
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
TACAAAATTACTGTTT
Found at i:74768312 original size:26 final size:27
Alignment explanation
Indices: 74768283--74768342 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
74768273 CCACCTATAT
*
74768283 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
74768309 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
74768336 ATATCTG
1 ATATCTG
74768343 GTAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:74768495 original size:31 final size:31
Alignment explanation
Indices: 74768460--74768536 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
74768450 TTGCATTCAC
* * *
74768460 ATTCTGATTTTGATTCTGTTATCTGATACTA
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
* *
74768491 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
74768522 ATTCTGATTCTGATT
1 ATTCTGATTCTGATT
74768537 ATAGTTCTGA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTA
Found at i:74768502 original size:6 final size:6
Alignment explanation
Indices: 74768460--74768536 Score: 75
Period size: 6 Copynumber: 12.5 Consensus size: 6
74768450 TTGCATTCAC
* * * *
74768460 ATTCTG ATTTTG ATTCTG TTATCTG ATACTA ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
74768509 -TCACCTG ATTCTG ATTCTG ATTCTG ATT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATT
74768537 ATAGTTCTGA
Statistics
Matches: 57, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
5 1 0.02
6 47 0.82
7 8 0.14
8 1 0.02
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:74772199 original size:22 final size:22
Alignment explanation
Indices: 74772174--74772236 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 22
74772164 AAACAACCAT
*
74772174 ATCACCACCATACAGCCACCTA
1 ATCACCACCATACAACCACCTA
* * *
74772196 ATCACTACCATTCAACCACCTT
1 ATCACCACCATACAACCACCTA
* *
74772218 AT-ACCACCACACGACCACC
1 ATCACCACCATACAACCACC
74772237 ACATCAAAAC
Statistics
Matches: 33, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
21 13 0.39
22 20 0.61
ACGTcount: A:0.35, C:0.46, G:0.03, T:0.16
Consensus pattern (22 bp):
ATCACCACCATACAACCACCTA
Found at i:74775138 original size:56 final size:56
Alignment explanation
Indices: 74775052--74775171 Score: 240
Period size: 56 Copynumber: 2.1 Consensus size: 56
74775042 ACAAGGGATG
74775052 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
74775108 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
74775164 ATGGGCAA
1 ATGGGCAA
74775172 TAAACTAATA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 64 1.00
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:74776466 original size:79 final size:81
Alignment explanation
Indices: 74776328--74776512 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
74776318 TTGAATGATG
* *
74776328 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
74776392 TGTGCAAGATACTA-A
66 TGTGCAAGATACTATA
* * * * **
74776407 TTCCGGGCTAAG-CCCAAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
* *
74776469 TTTGTGCGAGTTACTATA
64 TTTGTGCAAGATACTATA
* *
74776487 ACCGGGCTATGACCCGAAGGCATTTG
1 TCCGGGCTAAGACCCGAAGGCATTTG
74776513 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.63
80 32 0.36
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCAAGATACTATA
Found at i:74776519 original size:40 final size:39
Alignment explanation
Indices: 74776328--74776512 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
74776318 TTGAATGATG
* * * *
74776328 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * * *
74776368 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGATACTAAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
*
74776408 TCCGGGCTAAGCCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
*
74776447 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
*
74776488 -CCGGGCTATGACCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
74776513 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 33 0.27
40 81 0.66
41 9 0.07
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:74776534 original size:79 final size:79
Alignment explanation
Indices: 74776381--74776545 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
74776371 GGACTAAGAT
* **
74776381 CCGAAGGCATTTGTGCAAGATACTAATTCCGGGCTAAGCCCAAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCAAGATACTAATACCGGGCTAAGCCCAAAGGCATTTGAACGAGTTACTAA
*
74776446 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * * *
74776460 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGACCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCAAGATACTAAT-ACCGGGCTAAG-CCCAAAGGCATTTGAACGAGTTA-C
* *
74776523 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
74776539 CCGAAGG
1 CCGAAGG
74776546 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCAAGATACTAATACCGGGCTAAGCCCAAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:74793996 original size:85 final size:85
Alignment explanation
Indices: 74793868--74794045 Score: 347
Period size: 85 Copynumber: 2.1 Consensus size: 85
74793858 ATTTTATTGA
*
74793868 CCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
1 CCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
74793933 AGCCATAACATCTTGTCCAC
66 AGCCATAACATCTTGTCCAC
74793953 CCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
1 CCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
74794018 AGCCATAACATCTTGTCCAC
66 AGCCATAACATCTTGTCCAC
74794038 CCATGCTC
1 CCATGCTC
74794046 ATGGCTGGCC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.38
Consensus pattern (85 bp):
CCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
AGCCATAACATCTTGTCCAC
Found at i:74803585 original size:46 final size:46
Alignment explanation
Indices: 74803532--74803622 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
74803522 TATATATACA
** * *
74803532 CATCTCATACATGTCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
* * *
74803578 CATCTCATACACATTTCGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATAT
74803623 ATATACACAC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.26, C:0.32, G:0.08, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:74803698 original size:47 final size:47
Alignment explanation
Indices: 74803638--74803947 Score: 449
Period size: 47 Copynumber: 6.6 Consensus size: 47
74803628 CACACCCACG
* * * ** *
74803638 TTCATCACATTGGCCATTCTGCCCTATCACATGTATGCATCTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
* *
74803685 TTTATCACATTGGCCATTCGGCCTTAGCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
* * * *
74803732 TTCATCACATTGGCCATTCGACCTTATCACACATATGAATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
*
74803779 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
* *
74803826 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
* *
74803873 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
**
74803920 TTCATCACATTTTCCATTCGGCCTTAGC
1 TTCATCACATTGGCCATTCGGCCTTAGC
74803948 TGATGTATAC
Statistics
Matches: 244, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 244 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
Found at i:74803761 original size:22 final size:22
Alignment explanation
Indices: 74803686--74803762 Score: 59
Period size: 22 Copynumber: 3.4 Consensus size: 22
74803676 ATCTTCACAT
*
74803686 TTATCACATTGGCCATTCGGCC
1 TTATCACATTGGCCATTCGACC
* * *
74803708 TTAGCACATATATG-CATGTTC-ACA
1 TTATCACAT-T-GGCCA--TTCGACC
74803732 TTCATCACATTGGCCATTCGACC
1 TT-ATCACATTGGCCATTCGACC
74803755 TTATCACA
1 TTATCACA
74803763 CATATGAATG
Statistics
Matches: 41, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 17 0.41
23 8 0.20
24 7 0.17
25 9 0.22
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.32
Consensus pattern (22 bp):
TTATCACATTGGCCATTCGACC
Found at i:74803881 original size:23 final size:23
Alignment explanation
Indices: 74803855--74803928 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
74803845 GGCCTTAGCA
74803855 CACAAATGCATGTTCACATTCAT
1 CACAAATGCATGTTCACATTCAT
** * *
74803878 CACATTTGCCA--TTCGGCCTTAGCA-
1 CACAAATG-CATGTTC-ACATT--CAT
74803902 CACAAATGCATGTTCACATTCAT
1 CACAAATGCATGTTCACATTCAT
74803925 CACA
1 CACA
74803929 TTTTCCATTC
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 15 0.42
24 11 0.31
25 5 0.14
ACGTcount: A:0.31, C:0.30, G:0.11, T:0.28
Consensus pattern (23 bp):
CACAAATGCATGTTCACATTCAT
Found at i:74803905 original size:24 final size:24
Alignment explanation
Indices: 74803831--74803905 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
74803821 TCACATTCAT
74803831 CACATTTGCCATTCGGCCTTAGCA
1 CACATTTGCCATTCGGCCTTAGCA
** * *
74803855 CACAAATG-CATGTTC-ACATT--CA
1 CACATTTGCCA--TTCGGCCTTAGCA
74803877 TCACATTTGCCATTCGGCCTTAGCA
1 -CACATTTGCCATTCGGCCTTAGCA
74803902 CACA
1 CACA
74803906 AATGCATGTT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 11 0.31
24 15 0.42
25 5 0.14
ACGTcount: A:0.27, C:0.32, G:0.13, T:0.28
Consensus pattern (24 bp):
CACATTTGCCATTCGGCCTTAGCA
Found at i:74807867 original size:40 final size:39
Alignment explanation
Indices: 74807812--74808087 Score: 354
Period size: 40 Copynumber: 6.9 Consensus size: 39
74807802 TACACATCAC
* *
74807812 CGACACGAATGCCCTTCGGGACTTAGTCCGGATATAACA
1 CGACACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
* * *
74807851 TCGACACGAATACCCTTCGGGATTTAGCCCGGATATAACA
1 -CGACACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
* * * *
74807891 CCGACACGAATGCCCTTCGGGATTTTGCCCGGACATAACA
1 -CGACACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
*
74807931 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
1 CGA-CACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
* *
74807971 CCAGCACGGATGCTCTTCGGGACTTAGCCCGGATATAACA
1 CGA-CACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
*
74808011 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
1 CGA-CACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
* * *
74808051 TCGGCATGAATGCTCTTCGGGACTTAGCCCGGCTATA
1 -CGACACGAATGCTCTTCGGGACTTAGCCCGGATATA
74808088 TAAATCTCAA
Statistics
Matches: 216, Mismatches: 18, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 213 0.99
41 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.21
Consensus pattern (39 bp):
CGACACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
Found at i:74807949 original size:80 final size:80
Alignment explanation
Indices: 74807809--74808087 Score: 391
Period size: 80 Copynumber: 3.5 Consensus size: 80
74807799 GAATACACAT
* * * *
74807809 CACCGACACGAATGCCCTTCGGGACTTAGTCCGGATATAACATC-GACACGAATACCCTTCGGGA
1 CACCGACACGAATGCCCTTCGGGACTTAGCCCGGATATAACACCAG-CACGAATGCTCTTCGGGA
*
74807873 TTTAGCCCGGATATAA
65 CTTAGCCCGGATATAA
* * *
74807889 CACCGACACGAATGCCCTTCGGGATTTTGCCCGGACATAACACCAGCACGAATGCTCTTCGGGAC
1 CACCGACACGAATGCCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGAC
74807954 TTAGCCCGGATATAA
66 TTAGCCCGGATATAA
* *
74807969 CACC-AGCACGGATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGA
1 CACCGA-CACGAATGCCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGA
74808033 CTTAGCCCGGATATAA
65 CTTAGCCCGGATATAA
* * * * *
74808049 CATCGGCATGAATGCTCTTCGGGACTTAGCCCGGCTATA
1 CACCGACACGAATGCCCTTCGGGACTTAGCCCGGATATA
74808088 TAAATCTCAA
Statistics
Matches: 178, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
79 1 0.01
80 176 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (80 bp):
CACCGACACGAATGCCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGAC
TTAGCCCGGATATAA
Found at i:74810056 original size:39 final size:40
Alignment explanation
Indices: 74810013--74810180 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
74810003 CCTCGTTCAG
* * * *
74810013 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
74810052 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
74810092 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
74810132 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
74810172 TGCCTTCGG
1 TGCCTTCGG
74810181 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:74810164 original size:80 final size:80
Alignment explanation
Indices: 74810048--74810233 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
74810038 AGTAACTCAT
* * *
74810048 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
74810112 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
74810127 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
74810191 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
74810208 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
74810234 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:74810193 original size:40 final size:40
Alignment explanation
Indices: 74810050--74810233 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
74810040 TAACTCATAC
* *
74810050 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
74810090 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
74810130 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
74810170 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
74810211 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
74810234 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 105 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:74825247 original size:39 final size:40
Alignment explanation
Indices: 74825204--74825371 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
74825194 CTCGTTCAAG
* * * *
74825204 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
74825243 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
74825283 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
74825323 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
74825363 TGCCTTCGG
1 TGCCTTCGG
74825372 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:74825355 original size:80 final size:80
Alignment explanation
Indices: 74825239--74825424 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
74825229 AGTAACTCAT
* * *
74825239 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
74825303 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
74825318 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
74825382 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
74825399 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
74825425 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:74825384 original size:40 final size:40
Alignment explanation
Indices: 74825241--74825424 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
74825231 TAACTCATAC
* *
74825241 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
74825281 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
74825321 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
74825361 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
74825402 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
74825425 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 105 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:74833193 original size:39 final size:40
Alignment explanation
Indices: 74833150--74833317 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
74833140 CTCGTTCAGG
* * * *
74833150 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
74833189 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
74833229 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
74833269 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
74833309 TGCCTTCGG
1 TGCCTTCGG
74833318 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:74833301 original size:80 final size:80
Alignment explanation
Indices: 74833185--74833370 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
74833175 AGTAACTCAT
* * *
74833185 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
74833249 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
74833264 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
74833328 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
74833345 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
74833371 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:74833330 original size:40 final size:40
Alignment explanation
Indices: 74833187--74833370 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
74833177 TAACTCATAC
* *
74833187 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
74833227 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
74833267 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
74833307 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
74833348 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
74833371 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 105 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:74836007 original size:47 final size:47
Alignment explanation
Indices: 74835950--74836306 Score: 498
Period size: 47 Copynumber: 7.6 Consensus size: 47
74835940 CACACCCACG
* *** * **
74835950 TTCATCACATTGGCCGTTTTACCTTATCACATGTATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
* *
74835997 TTTATCACATTGGCCATTCGGCCTTAGCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
* * *
74836044 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCCTGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
*
74836091 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
* *
74836138 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
* * * *
74836185 TTCATCACATTTGCCATTTGGCCTTAGCAAACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
** *
74836232 TTCATCACATTTTCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
* *
74836279 TTCATCACATTTGCTATTCGGCCTTAGC
1 TTCATCACATTGGCCATTCGGCCTTAGC
74836307 TCATGTATAC
Statistics
Matches: 286, Mismatches: 24, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 286 1.00
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.34
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
Found at i:74836121 original size:22 final size:22
Alignment explanation
Indices: 74835998--74836074 Score: 59
Period size: 22 Copynumber: 3.4 Consensus size: 22
74835988 ATGTTCACAT
74835998 TTATCACATTGGCCATTCGGCC
1 TTATCACATTGGCCATTCGGCC
* * * *
74836020 TTAGCACATATATG-CATGTTC-ACA
1 TTATCACAT-T-GGCCA--TTCGGCC
74836044 TTCATCACATTGGCCATTCGGCC
1 TT-ATCACATTGGCCATTCGGCC
74836067 TTATCACA
1 TTATCACA
74836075 CATATGCCTG
Statistics
Matches: 40, Mismatches: 8, Indels: 14
0.65 0.13 0.23
Matches are distributed among these distances:
22 17 0.43
23 7 0.17
24 7 0.17
25 9 0.22
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.32
Consensus pattern (22 bp):
TTATCACATTGGCCATTCGGCC
Found at i:74851049 original size:15 final size:15
Alignment explanation
Indices: 74851025--74851066 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
74851015 AAACCTATAC
74851025 GTGA-ATTCTAAATT
1 GTGATATTCTAAATT
74851039 GTGATATTCTAAATT
1 GTGATATTCTAAATT
*
74851054 GTGATATTATAAA
1 GTGATATTCTAAA
74851067 ATGATATATG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
14 4 0.15
15 22 0.85
ACGTcount: A:0.38, C:0.05, G:0.14, T:0.43
Consensus pattern (15 bp):
GTGATATTCTAAATT
Found at i:74851977 original size:39 final size:40
Alignment explanation
Indices: 74851918--74852002 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
74851908 AAATGAATTG
* * * * *
74851918 TGCTGAGATTGTATCTGGG-TTAGAGACCCGCTGGCTTCA
1 TGCTGGGATTGTATCCGGGTTTAAAGACCCGCAGGCTTAA
*
74851957 TGCTGGGATTGTATCCGGGTTTAAAGTCCCGCAGGCTTAA
1 TGCTGGGATTGTATCCGGGTTTAAAGACCCGCAGGCTTAA
74851997 TGCTGG
1 TGCTGG
74852003 TGAATTAAGT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 17 0.44
40 22 0.56
ACGTcount: A:0.18, C:0.20, G:0.32, T:0.31
Consensus pattern (40 bp):
TGCTGGGATTGTATCCGGGTTTAAAGACCCGCAGGCTTAA
Found at i:74860111 original size:46 final size:45
Alignment explanation
Indices: 74860053--74860225 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
74860043 GTTGAGCATC
74860053 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGTT
* * * *
74860099 CGAACTCATTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGGTAT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--GT-T
****
74860145 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACCCC
1 -CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGTT
*
74860192 CGAACTCGTTGAATTGAGTCCGAGTTCACTTAGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
74860226 GGCGGGTTAC
Statistics
Matches: 105, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 6 0.06
46 58 0.55
47 26 0.25
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (45 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATGTT
Found at i:74860209 original size:93 final size:93
Alignment explanation
Indices: 74860050--74860218 Score: 275
Period size: 93 Copynumber: 1.8 Consensus size: 93
74860040 ATGGTTGAGC
**** *
74860050 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCATTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACCCCCGAACTCATTGAATTG
74860115 AGTCCGAGTTCGTGAGATGTAACTAGGT
66 AGTCCGAGTTCGTGAGATGTAACTAGGT
* *
74860143 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACCCCCGAACTCGTTGAATTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACCCCCGAACTCATTGAATTG
74860208 AGTCCGAGTTC
66 AGTCCGAGTTC
74860219 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACCCCCGAACTCATTGAATTG
AGTCCGAGTTCGTGAGATGTAACTAGGT
Found at i:74875556 original size:25 final size:25
Alignment explanation
Indices: 74875528--74875578 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
74875518 TGGAATTGAC
* *
74875528 TTGTGATTATTCAATTAAAACGTGA
1 TTGTGATGATTCAATCAAAACGTGA
*
74875553 TTGTGATGATTCAATCAAAATGTGA
1 TTGTGATGATTCAATCAAAACGTGA
74875578 T
1 T
74875579 GATAGCTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.39
Consensus pattern (25 bp):
TTGTGATGATTCAATCAAAACGTGA
Found at i:74875733 original size:48 final size:48
Alignment explanation
Indices: 74875657--74875978 Score: 380
Period size: 48 Copynumber: 6.7 Consensus size: 48
74875647 ATACTAATGT
* * *
74875657 GTGCCTGTGTAAGACCATGTCTAGGACATGGCATCCATGATGATATGA
1 GTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATGA
* * *
74875705 GTGCTTGTGTAAGACCATGTCTGGGACATGACATC-AGTGATGATATGA
1 GTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGA-CGATGATATGA
* * * * * *
74875753 GTGCCTATGTAAGACCATGTTTAGGATATGGAATCAACGATGATATGA
1 GTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATGA
* * * *
74875801 GTGCCTGTGTAAGGCCATGTCTGGGACATGGCATTGGCGATGATATGT
1 GTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATGA
*
74875849 GTGCCTGTGTAAGACCATGTCTGTGACATGGCATCGACGATGATAT-A
1 GTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATGA
* * *
74875896 TGTGCCTGTGTAAGACCATGTCTAGGACATAGCATCGACGATGATATGT
1 -GTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATGA
** * *
74875945 G-GATTCATGTAAGACCATGTCGGGGACATGGCAT
1 GTGCCT-GTGTAAGACCATGTCTGGGACATGGCAT
74875979 TGGTACTTTA
Statistics
Matches: 233, Mismatches: 36, Indels: 10
0.84 0.13 0.04
Matches are distributed among these distances:
47 3 0.01
48 229 0.98
49 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (48 bp):
GTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATGA
Found at i:74878658 original size:24 final size:24
Alignment explanation
Indices: 74878631--74878676 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
74878621 TCTGGAGTGT
*
74878631 ATCATGGAGAGATATTA-GGAGAAA
1 ATCAAGGAGAGAT-TTATGGAGAAA
*
74878655 ATCAAGGAGTGATTTATGGAGA
1 ATCAAGGAGAGATTTATGGAGA
74878677 GATTTAAGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 3 0.16
24 16 0.84
ACGTcount: A:0.41, C:0.04, G:0.30, T:0.24
Consensus pattern (24 bp):
ATCAAGGAGAGATTTATGGAGAAA
Found at i:74882779 original size:13 final size:13
Alignment explanation
Indices: 74882761--74882785 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74882751 TCGACAGGGA
74882761 CACGGCCGTGTGC
1 CACGGCCGTGTGC
74882774 CACGGCCGTGTG
1 CACGGCCGTGTG
74882786 AAGGTCCTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.36, G:0.40, T:0.16
Consensus pattern (13 bp):
CACGGCCGTGTGC
Found at i:74882875 original size:30 final size:30
Alignment explanation
Indices: 74882841--74882897 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
74882831 ACAACCATGC
*
74882841 CACACGGGAGAGTGGCCTACCCGTGTGTCA
1 CACACGGGAGAGTGGACTACCCGTGTGTCA
* * *
74882871 CACACGGGCGTGTGGATTACCCGTGTG
1 CACACGGGAGAGTGGACTACCCGTGTG
74882898 GAAGTGCCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.18, C:0.28, G:0.35, T:0.19
Consensus pattern (30 bp):
CACACGGGAGAGTGGACTACCCGTGTGTCA
Found at i:74884914 original size:18 final size:19
Alignment explanation
Indices: 74884891--74884936 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
74884881 TAGAACATAA
* *
74884891 AAAAATGAAAA-TAAAAAT
1 AAAAATGAAAAGGAAAAAG
74884909 AAAAAT-AAAAGGAAAAAG
1 AAAAATGAAAAGGAAAAAG
74884927 AAAAA-GAAAA
1 AAAAATGAAAA
74884937 ACAACGAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 4 0.17
18 20 0.83
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.09
Consensus pattern (19 bp):
AAAAATGAAAAGGAAAAAG
Found at i:74894429 original size:70 final size:70
Alignment explanation
Indices: 74894324--74894463 Score: 271
Period size: 70 Copynumber: 2.0 Consensus size: 70
74894314 TTGAATAGTG
74894324 TTAGGTTTCAGTTCAAAGTTATTTGCAGCAACAGCAGGTCTAACTATAGTCAATTCAGTTCCTGT
1 TTAGGTTTCAGTTCAAAGTTATTTGCAGCAACAGCAGGTCTAACTATAGTCAATTCAGTTCCTGT
74894389 TAGAT
66 TAGAT
*
74894394 TTAGGTTTTAGTTCAAAGTTATTTGCAGCAACAGCAGGTCTAACTATAGTCAATTCAGTTCCTGT
1 TTAGGTTTCAGTTCAAAGTTATTTGCAGCAACAGCAGGTCTAACTATAGTCAATTCAGTTCCTGT
74894459 TAGAT
66 TAGAT
74894464 AAAGTTAGCA
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (70 bp):
TTAGGTTTCAGTTCAAAGTTATTTGCAGCAACAGCAGGTCTAACTATAGTCAATTCAGTTCCTGT
TAGAT
Found at i:74894769 original size:23 final size:22
Alignment explanation
Indices: 74894731--74894778 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
74894721 TGCCAGAAGT
74894731 AATTAAAACAAAAACAA-AAAA
1 AATTAAAACAAAAACAATAAAA
*
74894752 AATTAAATTACAATAACAATAAAA
1 AATTAAA--ACAAAAACAATAAAA
74894776 AAT
1 AAT
74894779 GGCTAAAGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 7 0.30
23 9 0.39
24 7 0.30
ACGTcount: A:0.73, C:0.08, G:0.00, T:0.19
Consensus pattern (22 bp):
AATTAAAACAAAAACAATAAAA
Found at i:74904870 original size:20 final size:20
Alignment explanation
Indices: 74904831--74904870 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
74904821 AGACTAAATC
* * *
74904831 AGAAACATTTGGAAATTTTA
1 AGAAAAATTTGAAAAATTTA
74904851 AGAAAAATTTGAAAAATTTA
1 AGAAAAATTTGAAAAATTTA
74904871 GACTGCATAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.03, G:0.12, T:0.33
Consensus pattern (20 bp):
AGAAAAATTTGAAAAATTTA
Found at i:74916912 original size:24 final size:24
Alignment explanation
Indices: 74916885--74916951 Score: 89
Period size: 24 Copynumber: 2.8 Consensus size: 24
74916875 CTATCTGGAG
74916885 CTTCCCGATATGGTTCTTTGTGAA
1 CTTCCCGATATGGTTCTTTGTGAA
* *
74916909 CTTCCCGACAAGGTTCTTTGTGAA
1 CTTCCCGATATGGTTCTTTGTGAA
* *
74916933 ATTCCCGATTATGGCTCTT
1 CTTCCCGA-TATGGTTCTT
74916952 ATGAGCTTCC
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
24 29 0.81
25 7 0.19
ACGTcount: A:0.18, C:0.24, G:0.19, T:0.39
Consensus pattern (24 bp):
CTTCCCGATATGGTTCTTTGTGAA
Found at i:74917980 original size:47 final size:48
Alignment explanation
Indices: 74917902--74918002 Score: 136
Period size: 47 Copynumber: 2.1 Consensus size: 48
74917892 GAAATAAGGT
*
74917902 TGGCATCAGCGATGATATGTGTGCTAGTGTAAGACCATGTCTA-GACA
1 TGGCATCAGCGATGATATGTGTGCTAGTGTAAGACCATGTCGAGGACA
* *
74917949 TGGCATCGGCGATGATATGTG-GATTCA-TGTAAGACCATGTCGAGGACA
1 TGGCATCAGCGATGATATGTGTG-CT-AGTGTAAGACCATGTCGAGGACA
74917997 TGGCAT
1 TGGCAT
74918003 TGGTACTTTA
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
46 1 0.02
47 36 0.75
48 11 0.23
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (48 bp):
TGGCATCAGCGATGATATGTGTGCTAGTGTAAGACCATGTCGAGGACA
Found at i:74928118 original size:46 final size:46
Alignment explanation
Indices: 74927985--74928120 Score: 129
Period size: 46 Copynumber: 2.9 Consensus size: 46
74927975 GTCTCGAGGT
* *
74927985 CGATGCATTTCCCAAACATGTCTTACACTAGCACTCGAC-TCAA--TGC
1 CGATGCATGTCCCAAACATGTCTTACACT-G-GCTCGACAT-AATGTGC
* * * *
74928031 TGATGCCATGTCCCAGACATGGTGTTACACTGGCTC-TCATAATGTGGC
1 CGATG-CATGTCCCAAACAT-GTCTTACACTGGCTCGACATAATGT-GC
74928079 CGATGCATGTCCCAAACATGTCTTACACTGGC-CGACATAATG
1 CGATGCATGTCCCAAACATGTCTTACACTGGCTCGACATAATG
74928121 ACCCCCAAAT
Statistics
Matches: 73, Mismatches: 10, Indels: 14
0.75 0.10 0.14
Matches are distributed among these distances:
45 4 0.05
46 27 0.37
47 27 0.37
48 15 0.21
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (46 bp):
CGATGCATGTCCCAAACATGTCTTACACTGGCTCGACATAATGTGC
Found at i:74932044 original size:15 final size:15
Alignment explanation
Indices: 74932024--74932085 Score: 79
Period size: 15 Copynumber: 4.1 Consensus size: 15
74932014 ATATTGTATT
*
74932024 TTGGATTTCTATGTC
1 TTGGATTTCTTTGTC
*
74932039 TTGGATTTCTTTATC
1 TTGGATTTCTTTGTC
*
74932054 ATGGATTTCTTTGTC
1 TTGGATTTCTTTGTC
* *
74932069 TTGGACTTCTTTATC
1 TTGGATTTCTTTGTC
74932084 TT
1 TT
74932086 AGTTTTCATG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 40 1.00
ACGTcount: A:0.13, C:0.15, G:0.16, T:0.56
Consensus pattern (15 bp):
TTGGATTTCTTTGTC
Found at i:74932061 original size:30 final size:30
Alignment explanation
Indices: 74932025--74932083 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
74932015 TATTGTATTT
*
74932025 TGGATTTCTATGTCTTGGATTTCTTTATCA
1 TGGATTTCTATGTCTTGGACTTCTTTATCA
*
74932055 TGGATTTCTTTGTCTTGGACTTCTTTATC
1 TGGATTTCTATGTCTTGGACTTCTTTATC
74932084 TTAGTTTTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.14, C:0.15, G:0.17, T:0.54
Consensus pattern (30 bp):
TGGATTTCTATGTCTTGGACTTCTTTATCA
Found at i:74934786 original size:48 final size:48
Alignment explanation
Indices: 74934730--74935045 Score: 438
Period size: 48 Copynumber: 6.6 Consensus size: 48
74934720 ATGAGATTCC
* *
74934730 GTGTAAGACCATGTCTGGGACATGACATCGGTGATGATATATGTGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCT
* ** *
74934778 GTGTAAGACCGTGTCTGGGACATGGCATCGATGATGATATAAGTGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCT
*
74934826 GTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCT
* * * *
74934874 ATGTAAGACCATGTTTGGGACATGGCATCGACGATGATATGTGTGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCT
* *
74934922 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCT
* * **
74934970 GTGTAAAACCATGTCTGGGACATGGCATCGGCGATGATATGTG-GATT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCT
*
74935017 CATGTAAGACCATGTC-GAGGACATGGCAT
1 -GTGTAAGACCATGTCTG-GGACATGGCAT
74935046 TGGTACTTTA
Statistics
Matches: 242, Mismatches: 24, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
47 2 0.01
48 240 0.99
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCT
Found at i:74938286 original size:17 final size:17
Alignment explanation
Indices: 74938264--74938296 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
74938254 CGAATATGTG
74938264 TTTAATTAGGAAAAGGT
1 TTTAATTAGGAAAAGGT
74938281 TTTAATTAGGAAAAGG
1 TTTAATTAGGAAAAGG
74938297 ACCAAATTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.24, T:0.33
Consensus pattern (17 bp):
TTTAATTAGGAAAAGGT
Found at i:74944619 original size:17 final size:17
Alignment explanation
Indices: 74944565--74944625 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 17
74944555 ATTCACAAGG
74944565 CATACATATATACATCA
1 CATACATATATACATCA
* * ***
74944582 CATAAAAAT-TCACAAGG
1 CATACATATAT-ACATCA
74944599 CATACATATATACATCA
1 CATACATATATACATCA
74944616 CATACCATAT
1 CATA-CATAT
74944626 TGCAATTCAT
Statistics
Matches: 31, Mismatches: 10, Indels: 5
0.67 0.22 0.11
Matches are distributed among these distances:
16 1 0.03
17 24 0.77
18 6 0.19
ACGTcount: A:0.48, C:0.23, G:0.03, T:0.26
Consensus pattern (17 bp):
CATACATATATACATCA
Found at i:74944637 original size:34 final size:34
Alignment explanation
Indices: 74944519--74944619 Score: 175
Period size: 34 Copynumber: 3.0 Consensus size: 34
74944509 CAAGATTACC
* * *
74944519 AAATTCACAAGGCATACATATATGCATCACACAC
1 AAATTCACAAGGCATACATATATACATCACATAA
74944553 AAATTCACAAGGCATACATATATACATCACATAA
1 AAATTCACAAGGCATACATATATACATCACATAA
74944587 AAATTCACAAGGCATACATATATACATCACATA
1 AAATTCACAAGGCATACATATATACATCACATA
74944620 CCATATTGCA
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 64 1.00
ACGTcount: A:0.48, C:0.23, G:0.07, T:0.23
Consensus pattern (34 bp):
AAATTCACAAGGCATACATATATACATCACATAA
Found at i:74959726 original size:43 final size:42
Alignment explanation
Indices: 74959679--74959822 Score: 123
Period size: 42 Copynumber: 3.4 Consensus size: 42
74959669 TCCCAGACGA
* * *
74959679 GGTCTTACATGTAATCAAATATTGATGCCACTATCCTAGACAG
1 GGTCTTACATGAAATCAAATA-CGATGCCAATATCCTAGACAG
* * *
74959722 GGTCTTACATGAAATCATATACGATGCCAATGTCCTAGACAT
1 GGTCTTACATGAAATCAAATACGATGCCAATATCCTAGACAG
* * * *
74959764 GGTCTTATACGCAAATCTCAAAT-CAATGCCAATGTCCTA-A-ATG
1 GGTCTTACATG-AAA--TCAAATACGATGCCAATATCCTAGACA-G
74959807 TGGTCTTACATGAAAT
1 -GGTCTTACATGAAAT
74959823 TACATACCAG
Statistics
Matches: 83, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
41 1 0.01
42 27 0.33
43 26 0.31
44 24 0.29
45 5 0.06
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (42 bp):
GGTCTTACATGAAATCAAATACGATGCCAATATCCTAGACAG
Found at i:74959761 original size:42 final size:44
Alignment explanation
Indices: 74959658--74959822 Score: 128
Period size: 43 Copynumber: 3.8 Consensus size: 44
74959648 AAAGCTCATA
* * * *
74959658 CAATGCCAACGTCCCAGAC-GAGGTCTTACATGTAATCAAATAT
1 CAATGCCAATGTCCTAGACAGAGGTCTTACATGAAATCATATAT
** * *
74959701 TGATGCCACTATCCTAGACAG-GGTCTTACATGAAATCATATA-
1 CAATGCCAATGTCCTAGACAGAGGTCTTACATGAAATCATATAT
* * * * *
74959743 CGATGCCAATGTCCTAGACA-TGGTCTTATACGCAAATC-TCAAAT
1 CAATGCCAATGTCCTAGACAGAGGTCTTACATG-AAATCAT-ATAT
*
74959787 CAATGCCAATGTCCTA-A-ATGTGGTCTTACATGAAAT
1 CAATGCCAATGTCCTAGACA-GAGGTCTTACATGAAAT
74959823 TACATACCAG
Statistics
Matches: 98, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
42 28 0.29
43 44 0.45
44 26 0.27
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.27
Consensus pattern (44 bp):
CAATGCCAATGTCCTAGACAGAGGTCTTACATGAAATCATATAT
Found at i:74961336 original size:27 final size:27
Alignment explanation
Indices: 74961305--74961488 Score: 144
Period size: 27 Copynumber: 6.9 Consensus size: 27
74961295 AGAATACTTT
*
74961305 AGTTTACCAAATTACTGAAATACCCTC
1 AGTTTACAAAATTACTGAAATACCCTC
* *
74961332 AGTTTGCAAAATTATTGAAATACCCTC
1 AGTTTACAAAATTACTGAAATACCCTC
* *
74961359 -GAATTGCAAAATTACTGAAATACCCTC
1 AG-TTTACAAAATTACTGAAATACCCTC
* * * *
74961386 -GACTTGCAAAATTAC-CAAAGTACCCCC
1 AG-TTTACAAAATTACTGAAA-TACCCTC
* *
74961413 AGTTTATAAAATTACTGAAATACCGTC
1 AGTTTACAAAATTACTGAAATACCCTC
* ** *
74961440 -GATTGTAAAATTACTAAAATACCCTC
1 AGTTTACAAAATTACTGAAATACCCTC
**
74961466 -GATTTGTAAAATTACTGAAATAC
1 AG-TTTACAAAATTACTGAAATAC
74961489 TCCTATAAGA
Statistics
Matches: 132, Mismatches: 20, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
26 27 0.20
27 101 0.77
28 4 0.03
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (27 bp):
AGTTTACAAAATTACTGAAATACCCTC
Done.