Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 227 of 333
Found at i:74961476 original size:53 final size:53
Alignment explanation
Indices: 74961313--74961488 Score: 219
Period size: 54 Copynumber: 3.3 Consensus size: 53
74961303 TTAGTTTACC
* * * * *
74961313 AAATTACTGAAATACCCTCAGTTTGCAAAATTATTGAAATACCCTCGAATTGCA
1 AAATTACTGAAATACCCTC-GATTGCAAAATTACTAAAATACCCTCGATTTGTA
* * * *
74961367 AAATTACTGAAATACCCTCGACTTGCAAAATTACCAAAGTACCC-CCAGTTTATA
1 AAATTACTGAAATACCCTCGA-TTGCAAAATTACTAAAATACCCTCGA-TTTGTA
* *
74961421 AAATTACTGAAATACCGTCGATTGTAAAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTGCAAAATTACTAAAATACCCTCGATTTGTA
74961474 AAATTACTGAAATAC
1 AAATTACTGAAATAC
74961489 TCCTATAAGA
Statistics
Matches: 104, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
53 42 0.40
54 62 0.60
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.29
Consensus pattern (53 bp):
AAATTACTGAAATACCCTCGATTGCAAAATTACTAAAATACCCTCGATTTGTA
Found at i:74961530 original size:27 final size:27
Alignment explanation
Indices: 74961498--74961669 Score: 218
Period size: 27 Copynumber: 6.4 Consensus size: 27
74961488 CTCCTATAAG
74961498 ATAGAATTATCATTTTACCCTCGATTT
1 ATAGAATTATCATTTTACCCTCGATTT
* * *
74961525 ACAGAATTATCGTTTTACCCTAGATTT
1 ATAGAATTATCATTTTACCCTCGATTT
* **
74961552 ATAGAATTACCATTTTACCCTTTATTT
1 ATAGAATTATCATTTTACCCTCGATTT
* *
74961579 ATAGAATTACCATTTTACTCTCGATTT
1 ATAGAATTATCATTTTACCCTCGATTT
* * *
74961606 ACAGAATTATCGTCTTACCCTCGATTT
1 ATAGAATTATCATTTTACCCTCGATTT
* *
74961633 ATAAAATTACCATTTTACCCTCGATTT
1 ATAGAATTATCATTTTACCCTCGATTT
*
74961660 ATAAAATTAT
1 ATAGAATTAT
74961670 TGAAATACCA
Statistics
Matches: 123, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 123 1.00
ACGTcount: A:0.31, C:0.19, G:0.07, T:0.42
Consensus pattern (27 bp):
ATAGAATTATCATTTTACCCTCGATTT
Found at i:74961560 original size:81 final size:81
Alignment explanation
Indices: 74961459--74961645 Score: 234
Period size: 81 Copynumber: 2.3 Consensus size: 81
74961449 ATTACTAAAA
* * *
74961459 TACCCTCGATTTGTAAAATTACTGA-AATACTCCTATA-AGATAGAATTATCATTTTACCCTCGA
1 TACCCTCGATTTATAAAATTAC-CATAATAC-CCTATATAGATAGAATTACCATTTTACCCTCGA
*
74961522 TTTACAGAATTATCGTTT
64 TTTACAGAATTATCGTCT
* * ** * ** *
74961540 TACCCTAGATTTATAGAATTACCATTTTACCCTTTATTTATAGAATTACCATTTTACTCTCGATT
1 TACCCTCGATTTATAAAATTACCATAATACCCTATATAGATAGAATTACCATTTTACCCTCGATT
74961605 TACAGAATTATCGTCT
66 TACAGAATTATCGTCT
74961621 TACCCTCGATTTATAAAATTACCAT
1 TACCCTCGATTTATAAAATTACCAT
74961646 TTTACCCTCG
Statistics
Matches: 90, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
80 6 0.07
81 84 0.93
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACCATAATACCCTATATAGATAGAATTACCATTTTACCCTCGATT
TACAGAATTATCGTCT
Found at i:74961646 original size:81 final size:81
Alignment explanation
Indices: 74961498--74961668 Score: 270
Period size: 81 Copynumber: 2.1 Consensus size: 81
74961488 CTCCTATAAG
* * *
74961498 ATAGAATTATCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTAGATTTATAGAATTACC
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTCTTACCCTAGATTTATAAAATTACC
**
74961563 ATTTTACCCTTTATTT
66 ATTTTACCCTCGATTT
* *
74961579 ATAGAATTACCATTTTACTCTCGATTTACAGAATTATCGTCTTACCCTCGATTTATAAAATTACC
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTCTTACCCTAGATTTATAAAATTACC
74961644 ATTTTACCCTCGATTT
66 ATTTTACCCTCGATTT
*
74961660 ATAAAATTA
1 ATAGAATTA
74961669 TTGAAATACC
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.32, C:0.19, G:0.07, T:0.42
Consensus pattern (81 bp):
ATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTCTTACCCTAGATTTATAAAATTACC
ATTTTACCCTCGATTT
Found at i:74961678 original size:27 final size:26
Alignment explanation
Indices: 74961621--74961787 Score: 97
Period size: 27 Copynumber: 6.2 Consensus size: 26
74961611 ATTATCGTCT
***
74961621 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAAAATTA-CAAAA
**
74961648 TACCCTCGATTTATAAAATTATTGAAA
1 TACCCTCGATTTATAAAATTA-CAAAA
* * *
74961675 TACCAT-TAGTTTACAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTA-CAAAA
**
74961702 TACCCTCGATCAATAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTA-CAAAA
* *
74961729 TA-CCTCTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTATAAAATTA-CAAAA
* * *
74961756 TACCC-CTAATTTGTGAAATTACCAAAA
1 TACCCTC-GATTTATAAAATTA-CAAAA
74961783 TACCC
1 TACCC
74961788 CTGTAGTGTA
Statistics
Matches: 112, Mismatches: 24, Indels: 8
0.78 0.17 0.06
Matches are distributed among these distances:
26 5 0.04
27 104 0.93
28 3 0.03
ACGTcount: A:0.41, C:0.22, G:0.06, T:0.32
Consensus pattern (26 bp):
TACCCTCGATTTATAAAATTACAAAA
Found at i:74961730 original size:54 final size:54
Alignment explanation
Indices: 74961630--74961760 Score: 147
Period size: 54 Copynumber: 2.4 Consensus size: 54
74961620 TTACCCTCGA
*** ** ***
74961630 TTTATAAAATTACCATTTTACCCTCGATTTATAAAATTATTGAAATACCAT-TAG
1 TTTATAAAATTACCAAAATACCCTCGATCAATAAAATTACCAAAATACC-TCTAG
* *
74961684 TTTACAAAATTACCAAAATACCCTCGATCAATAAAATTACCAAAATACCTCTGG
1 TTTATAAAATTACCAAAATACCCTCGATCAATAAAATTACCAAAATACCTCTAG
*
74961738 TTTGTAAAATTACCAAAATACCC
1 TTTATAAAATTACCAAAATACCC
74961761 CTAATTTGTG
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.02
54 63 0.98
ACGTcount: A:0.42, C:0.20, G:0.05, T:0.33
Consensus pattern (54 bp):
TTTATAAAATTACCAAAATACCCTCGATCAATAAAATTACCAAAATACCTCTAG
Found at i:74961788 original size:27 final size:27
Alignment explanation
Indices: 74961689--74961789 Score: 114
Period size: 27 Copynumber: 3.7 Consensus size: 27
74961679 ATTAGTTTAC
* ***
74961689 AAAATTACCAAAATA-CCCTCGATCAAT
1 AAAATTACCAAAATACCCCT-AATTTGT
* **
74961716 AAAATTACCAAAATACCTCTGGTTTGT
1 AAAATTACCAAAATACCCCTAATTTGT
74961743 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAATTTGT
*
74961770 GAAATTACCAAAATACCCCT
1 AAAATTACCAAAATACCCCT
74961790 GTAGTGTAGA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 61 0.95
28 3 0.05
ACGTcount: A:0.44, C:0.24, G:0.06, T:0.27
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAATTTGT
Found at i:74961802 original size:27 final size:27
Alignment explanation
Indices: 74961772--74962101 Score: 353
Period size: 27 Copynumber: 12.3 Consensus size: 27
74961762 TAATTTGTGA
* *
74961772 AATTACCAAAATACCCCTGTAGTGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
74961799 AATTACTGAAATACCATTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
74961826 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
74961853 AATTACTGAAATACCCTTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
74961880 AATTATTGAAATACCCCTATATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
74961907 -ATTACTGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
74961933 AATTATCGAAATATCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
74961960 AATGACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
74961987 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
74962014 AATTACTGAAATACCCTTGTAGGGTAGG
1 AATTACCGAAATACCCCTGTAGGGTA-G
* *
74962042 AA-TACTGTAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
74962068 AATTACCGAGAA-A-CCCTCGTGGGGTAA
1 AATTACCGA-AATACCCCT-GTAGGGTAG
74962095 AATTACC
1 AATTACC
74962102 ATTTTACCCC
Statistics
Matches: 257, Mismatches: 41, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
26 29 0.11
27 223 0.87
28 5 0.02
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:74961830 original size:54 final size:54
Alignment explanation
Indices: 74961772--74962101 Score: 389
Period size: 54 Copynumber: 6.1 Consensus size: 54
74961762 TAATTTGTGA
* * * *
74961772 AATTACCAAAATACCCCTGTAGTGTAGAATTACTGAAATACCATTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAG
* *
74961826 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAG
** * *
74961880 AATTATTGAAATACCCCTATATGGTAG-ATTACTGAAATA-CCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCT-TGTAGGGTAG
* * * * * *
74961933 AATTATCGAAATATCCCTGTAAGGTAGAATGACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAG
* *
74961987 AATTACTGAAATACCCCTATAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTA-G
* * * * * *
74962042 AA-TACTGTAATACCCCTGTAGGGTAGAATTACCGAGAA-ACCCTCGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGA-AATACCCTTGTAGGGTAG
74962095 AATTACC
1 AATTACC
74962102 ATTTTACCCC
Statistics
Matches: 238, Mismatches: 32, Indels: 12
0.84 0.11 0.04
Matches are distributed among these distances:
52 3 0.01
53 45 0.19
54 183 0.77
55 7 0.03
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (54 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAG
Found at i:74961960 original size:134 final size:135
Alignment explanation
Indices: 74961780--74962073 Score: 441
Period size: 134 Copynumber: 2.2 Consensus size: 135
74961770 GAAATTACCA
* * *
74961780 AAATACCCCTGTAGTGTAGAATTACTGAAATACCATTGTAAGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTGTAGGGTAGAATTACTGAAATACCACTGTAAGGTAGAATGACCGAAATACCCCTG
* * * *
74961845 TAGGGTAGAATTACTGAAATACCCTTATAAGGTAGAATTATTGAAATACCCCTATATGGTA-GAT
66 TAGGGTAGAATTACTGAAATACCCCTATAAGGTAGAATTACTGAAATACCCCTATAGGGTAGGAA
74961909 TACTG
131 TACTG
*
74961914 AAATACCTCTGTAGGGTAGAATTA-TCGAAATATCC-CTGTAAGGTAGAATGACCGAAATACCCC
1 AAATACCCCTGTAGGGTAGAATTACT-GAAATA-CCACTGTAAGGTAGAATGACCGAAATACCCC
* * *
74961977 TGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGG
64 TGTAGGGTAGAATTACTGAAATACCCCTATAAGGTAGAATTACTGAAATACCCCTATAGGGTAGG
74962042 AATACTG
129 AATACTG
*
74962049 TAATACCCCTGTAGGGTAGAATTAC
1 AAATACCCCTGTAGGGTAGAATTAC
74962074 CGAGAAACCC
Statistics
Matches: 143, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
133 1 0.01
134 111 0.78
135 31 0.22
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (135 bp):
AAATACCCCTGTAGGGTAGAATTACTGAAATACCACTGTAAGGTAGAATGACCGAAATACCCCTG
TAGGGTAGAATTACTGAAATACCCCTATAAGGTAGAATTACTGAAATACCCCTATAGGGTAGGAA
TACTG
Found at i:74962580 original size:22 final size:22
Alignment explanation
Indices: 74962528--74962592 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
74962518 TTAAAGCCTT
* *
74962528 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
74962550 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
74962572 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
74962593 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:74962787 original size:26 final size:27
Alignment explanation
Indices: 74962751--74962824 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 27
74962741 ATTCTGTTAA
* *
74962751 GTGGCTTTGCCATATTATCTGT-TCTG
1 GTGGCTCTGCCATAATATCTGTATCTG
*
74962777 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCATAATATCTGTATCTG
* *
74962804 GTGACTCTGTCATAATATCTG
1 GTGGCTCTGCCATAATATCTG
74962825 ATAACTGAGC
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
26 19 0.46
27 22 0.54
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.39
Consensus pattern (27 bp):
GTGGCTCTGCCATAATATCTGTATCTG
Found at i:74962994 original size:19 final size:19
Alignment explanation
Indices: 74962972--74963029 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
74962962 TTCTGATTTT
74962972 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
74962991 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
74963003 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
74963022 TGATTCTG
1 TGATTCTG
74963030 ATTTCGATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 8 0.27
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 16 0.53
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:74962999 original size:6 final size:6
Alignment explanation
Indices: 74962961--74963105 Score: 77
Period size: 6 Copynumber: 23.3 Consensus size: 6
74962951 TTGCATTCAC
* * *
74962961 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
74963011 -TTACCTG ATACTG ATTCTG ATT-TCG ATTCT- ATTACCTG ATACTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCT-G ATTCTG ATT--CTG ATTCTG ATTCTG
* * *
74963061 ATTCTG -TCACCTG ATTCTG ATTTTG ATTCTA ATTCT- AGTTCTG AT
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
74963106 AATGTTTCTT
Statistics
Matches: 107, Mismatches: 15, Indels: 34
0.69 0.10 0.22
Matches are distributed among these distances:
5 10 0.09
6 74 0.69
7 18 0.17
8 5 0.05
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:74963007 original size:31 final size:31
Alignment explanation
Indices: 74962961--74963063 Score: 179
Period size: 31 Copynumber: 3.3 Consensus size: 31
74962951 TTGCATTCAC
74962961 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
74962993 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* *
74963024 ATTCTGATTTCGATTCTATTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
74963055 ATTCTGATT
1 ATTCTGATT
74963064 CTGTCACCTG
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
31 62 0.90
32 7 0.10
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:74963018 original size:25 final size:25
Alignment explanation
Indices: 74962990--74963090 Score: 103
Period size: 25 Copynumber: 3.8 Consensus size: 25
74962980 TTACCTGATA
74962990 CTGATTCTGATTTTGATTCTGTTACC
1 CTGATTCTGATTTTGATTCTGTTA-C
* *
74963016 TGATACTGATTCTGATTTCGATTCTATTAC
1 -----CTGATTCTGATTTTGATTCTGTTAC
* * *
74963046 CTGATACTGATTCTGATTCTGTCAC
1 CTGATTCTGATTTTGATTCTGTTAC
74963071 CTGATTCTGATTTTGATTCT
1 CTGATTCTGATTTTGATTCT
74963091 AATTCTAGTT
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
25 38 0.62
30 1 0.02
31 22 0.36
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTTTGATTCTGTTAC
Found at i:74965173 original size:31 final size:32
Alignment explanation
Indices: 74965132--74965197 Score: 80
Period size: 34 Copynumber: 2.0 Consensus size: 32
74965122 TTTAAATTAA
*
74965132 TTAATTAGATA-AATATTATTTTATTAATATT
1 TTAATGAGATATAATATTATTTTATTAATATT
* *
74965163 TTAATGAGATATTTATTATTATTTTATTATTATT
1 TTAATGAGATA--TAATATTATTTTATTAATATT
74965197 T
1 T
74965198 ATTTAGTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
31 10 0.34
34 19 0.66
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (32 bp):
TTAATGAGATATAATATTATTTTATTAATATT
Found at i:74967389 original size:37 final size:37
Alignment explanation
Indices: 74967329--74967404 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
74967319 TATTACGAAA
* * *
74967329 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
*
74967366 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
74967403 TC
1 TC
74967405 CTTAGAACTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.22
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
Found at i:74967603 original size:47 final size:47
Alignment explanation
Indices: 74967525--74967883 Score: 547
Period size: 47 Copynumber: 7.6 Consensus size: 47
74967515 CCCTTCGGGA
* * * * * *
74967525 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
74967572 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
74967619 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74967666 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74967715 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74967762 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74967809 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74967856 CTTATCACATATATATACACTTTCACAT
1 CTTATCAC--ATATATACACTTTCACAT
74967884 ATGGGTTTAA
Statistics
Matches: 287, Mismatches: 21, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
47 226 0.79
49 61 0.21
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74967848 original size:190 final size:190
Alignment explanation
Indices: 74967525--74967883 Score: 610
Period size: 190 Copynumber: 1.9 Consensus size: 190
74967515 CCCTTCGGGA
** * * * *
74967525 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACACATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
74967590 TTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAAGCCTTATCACACATATACACTTTCACATTCATCACATC
74967655 GGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 GGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
74967715 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACACATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
* *
74967780 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAAGCCTTATCACACATATACACTTTCACATTCATCACATC
74967845 GGCCATTAAGCCTTATCACATATATATACACTTTCACAT
131 GGCCATTAAGCCTTATCACATATATATACACTTTCACAT
74967884 ATGGGTTTAA
Statistics
Matches: 157, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
190 157 1.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (190 bp):
CTTATCACACATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAAGCCTTATCACACATATACACTTTCACATTCATCACATC
GGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:74971357 original size:40 final size:40
Alignment explanation
Indices: 74971313--74971428 Score: 133
Period size: 40 Copynumber: 2.9 Consensus size: 40
74971303 GAATACATGT
* * *
74971313 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
* * ***
74971353 CACCAGCACGAATGCTCTTCGGAACTTAGTCCGGATACCT
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
* **
74971393 CACTAGCACGAATGCTCTTCGGAATTTAGCCCGGAT
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGAT
74971429 TTAGTAACTC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
Found at i:74971453 original size:40 final size:40
Alignment explanation
Indices: 74971329--74971590 Score: 225
Period size: 40 Copynumber: 6.5 Consensus size: 40
74971319 CATGATTGCT
* * * *
74971329 CTTCGGGACCTAGCCCGGATATAAC-AC-CAGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTC-GCACCAATGC
** * ** * *
74971368 TCTTCGGAACTTAGTCCGGATACCTC-ACTAGCACGAATGC
1 -CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAATGC
* *
74971408 TCTTCGGAAT-TTAGCCCGGATTTAGT-AACTCGCACCAATGC
1 -CTTCGG-GTCTTAGCCCGGATATA-TCAACTCGCACCAATGC
*
74971449 CTTCGGGTCTTAGCCCGGATATATCAACTTGCA-CAATTGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAA-TGC
* *
74971489 CTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAATGC
* *
74971529 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGC-TCAATTGC
1 CTTCGGGTCTTAGCCCGGATAT-ATCAACTCGCACCAA-TGC
*
74971569 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
74971591 CATTCAAATG
Statistics
Matches: 187, Mismatches: 25, Indels: 20
0.81 0.11 0.09
Matches are distributed among these distances:
39 7 0.04
40 161 0.86
41 19 0.10
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAATGC
Found at i:74971461 original size:80 final size:78
Alignment explanation
Indices: 74971339--74971590 Score: 251
Period size: 80 Copynumber: 3.2 Consensus size: 78
74971329 CTTCGGGACC
* * ** * **
74971339 TAGCCCGGATATAAC-AC-CAGCACGAATGCTCTTCGGAACTTAGTCCGGATACCTCACTAGCAC
1 TAGCCCGGATATATCAACTC-GCACAAATGC-CTTCGGGTCTTAGCCCGGATAAATCACTAGCAC
74971402 GAA-TGCTCTTCGGAATT
64 -AATTGC-CTTCGG-ATT
* * * *
74971419 TAGCCCGGATTTAGT-AACTCGCACCAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCAC
1 TAGCCCGGATATA-TCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAATC-ACTAGCAC
*
74971483 AATTGCCTTCGGGTCT
64 AATTGCCTTCGGAT-T
* *
74971499 TAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCTCA
1 TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATA-AATCACTAGCACA
*
74971564 ATTGCCTTCGGGACT
65 ATTGCCTTC-GGATT
74971579 TAGCCCGGATAT
1 TAGCCCGGATAT
74971591 CATTCAAATG
Statistics
Matches: 145, Mismatches: 18, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
79 2 0.01
80 116 0.80
81 26 0.18
82 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.27
Consensus pattern (78 bp):
TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAATCACTAGCACAA
TTGCCTTCGGATT
Found at i:74971917 original size:29 final size:29
Alignment explanation
Indices: 74971878--74971956 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
74971868 CTTAATAATC
*
74971878 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
74971908 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
74971937 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
74971957 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:74971999 original size:43 final size:43
Alignment explanation
Indices: 74971938--74972169 Score: 446
Period size: 43 Copynumber: 5.4 Consensus size: 43
74971928 TGCATTTCAA
74971938 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
74971981 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
74972024 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
74972067 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
74972110 GCTCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
74972153 GCTCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
74972170 TGAAAACCAA
Statistics
Matches: 188, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 188 1.00
ACGTcount: A:0.27, C:0.34, G:0.15, T:0.24
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:74974082 original size:37 final size:37
Alignment explanation
Indices: 74974022--74974097 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
74974012 TATTACGAAA
* * *
74974022 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
*
74974059 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
74974096 TC
1 TC
74974098 CTTAGAACTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.22
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
Found at i:74974296 original size:47 final size:47
Alignment explanation
Indices: 74974218--74974623 Score: 605
Period size: 47 Copynumber: 8.6 Consensus size: 47
74974208 CCCTTCGGGA
* * * * * **
74974218 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
74974265 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
**
74974312 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
**
74974359 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
74974406 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
74974455 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
74974502 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
74974549 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
74974596 CTTATCACATATATATACACTTTCACAT
1 CTTATCAC--ATATATACACTTTCACAT
74974624 ATGGGTTTAA
Statistics
Matches: 334, Mismatches: 21, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
47 273 0.82
49 61 0.18
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:74974556 original size:190 final size:190
Alignment explanation
Indices: 74974218--74974623 Score: 672
Period size: 190 Copynumber: 2.1 Consensus size: 190
74974208 CCCTTCGGGA
* * * * *
74974218 CTTATCACAT-T-TATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACACATATAC
*
74974281 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACACATATACACTTTCACATTCATCACA
*
74974346 TCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
131 TCGGCCATTAAGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGC
* * * *
74974406 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATAC
1 CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACACATATAC
*
74974471 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACACATATACACTTTCACATTCATCACA
* *
74974536 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
131 TCGGCCATTAAGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGC
74974596 CTTATCACATATATATACACTTTCACAT
1 CTTATCACATATATATACACTTTCACAT
74974624 ATGGGTTTAA
Statistics
Matches: 202, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
188 10 0.05
189 1 0.00
190 191 0.95
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (190 bp):
CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACACATATAC
ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACACATATACACTTTCACATTCATCACA
TCGGCCATTAAGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:74977878 original size:33 final size:32
Alignment explanation
Indices: 74977809--74977888 Score: 85
Period size: 33 Copynumber: 2.5 Consensus size: 32
74977799 ATCTCATTAT
* *
74977809 GAAAAGG-AATTTCACCTGAAAAGGTGACACTT
1 GAAAAGGAAATGT-ACCTGAAAAGGTGACACTA
74977841 GAAAAGGATACATGTACCT-AAAAGGT-ACAACTA
1 GAAAAGGA-A-ATGTACCTGAAAAGGTGAC-ACTA
74977874 GAAAAGGAAATGTAC
1 GAAAAGGAAATGTAC
74977889 ACTGTGTGTG
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
31 6 0.14
32 10 0.24
33 18 0.43
34 5 0.12
35 3 0.07
ACGTcount: A:0.46, C:0.14, G:0.21, T:0.19
Consensus pattern (32 bp):
GAAAAGGAAATGTACCTGAAAAGGTGACACTA
Found at i:74977902 original size:33 final size:32
Alignment explanation
Indices: 74977865--74977968 Score: 124
Period size: 33 Copynumber: 3.2 Consensus size: 32
74977855 TACCTAAAAG
74977865 GTACAACTAGAAAAGGAAATGTACACTGTGTGT
1 GTACAACTAGAAAAGGAAATGTACACT-TGTGT
*
74977898 GTACAACTTA-AAAAGGAAACGTACACTTTGTGT
1 GTACAAC-TAGAAAAGGAAATGTACAC-TTGTGT
*
74977931 GTAC-ACTTGAAAAGGAAATGTATGC-CTTGTGT
1 GTACAACTAGAAAAGGAAATGTA--CACTTGTGT
74977963 GTACAA
1 GTACAA
74977969 TGTGAAAAGT
Statistics
Matches: 62, Mismatches: 3, Indels: 12
0.81 0.04 0.16
Matches are distributed among these distances:
31 1 0.02
32 24 0.39
33 33 0.53
34 4 0.06
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (32 bp):
GTACAACTAGAAAAGGAAATGTACACTTGTGT
Found at i:74978007 original size:31 final size:31
Alignment explanation
Indices: 74977970--74978174 Score: 250
Period size: 31 Copynumber: 6.5 Consensus size: 31
74977960 TGTGTACAAT
* *
74977970 GTGAAAAGTGGTAGCTTCGGGTACCTAATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
*
74978001 GTGAAAAGTGGTAGCTTCGGCTACTTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
*
74978032 GTGAAAAGTGGTAGCTTCGGCTACCTGATGA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* * *
74978063 GTGAAAAGTAGTAGCTTTGGCTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
** *
74978094 GTGAAAAGTGGTAGCTTTAGCTAACTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* * *
74978125 GTGAATAGTGGTCGCTTCGGCTACAAGTGA-CAA
1 GTGAAAAGTGGTAGCTTCGGCTAC--CTGATC-A
*
74978158 GTGATAAGTGGTAGCTT
1 GTGAAAAGTGGTAGCTT
74978175 TAGCTACACT
Statistics
Matches: 150, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
31 131 0.87
32 1 0.01
33 18 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
Found at i:74978269 original size:27 final size:27
Alignment explanation
Indices: 74978238--74978302 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
74978228 TAGTTGAACT
*
74978238 ATGGCAAAGTGATAAAGTGTGCCAATC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
74978265 ATGGCAAAGTGATATAGTGTGCCAAAC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
74978292 ATAGCAAAGTG
1 ATGGCAAAGTG
74978303 TTCAGTGATC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (27 bp):
ATGGCAAAGTGATAAAGTGTGCCAAAC
Found at i:74978395 original size:34 final size:34
Alignment explanation
Indices: 74978357--74978430 Score: 112
Period size: 34 Copynumber: 2.2 Consensus size: 34
74978347 CATGGCAAAG
*
74978357 TGTGAAAAGTAGGTATGGTATTTCCATACTGAGC
1 TGTGAAAAGTAGGTATGCTATTTCCATACTGAGC
* * *
74978391 TGTGAAACGTAGGTATGCTGTTTCCATACTGAGT
1 TGTGAAAAGTAGGTATGCTATTTCCATACTGAGC
74978425 TGTGAA
1 TGTGAA
74978431 TCGTGGCACT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (34 bp):
TGTGAAAAGTAGGTATGCTATTTCCATACTGAGC
Found at i:74996746 original size:13 final size:13
Alignment explanation
Indices: 74996728--74996754 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
74996718 GCTCGGCAAG
74996728 GACACGCCCGTGT
1 GACACGCCCGTGT
74996741 GACACGCCCGTGT
1 GACACGCCCGTGT
74996754 G
1 G
74996755 CGATTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:75001631 original size:40 final size:40
Alignment explanation
Indices: 75001583--75001730 Score: 251
Period size: 40 Copynumber: 3.7 Consensus size: 40
75001573 GCAAACACAT
* * *
75001583 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
75001623 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
75001663 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
75001703 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
75001731 TCCAATGCTC
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 101 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:75021784 original size:25 final size:25
Alignment explanation
Indices: 75021751--75021800 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
75021741 CCTATAACAT
* * *
75021751 AAAAATGACCGTTTTGCCCCTAGGG
1 AAAAATGACCATTATACCCCTAGGG
*
75021776 AAAAGTGACCATTATACCCCTAGGG
1 AAAAATGACCATTATACCCCTAGGG
75021801 TTTATATATG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22
Consensus pattern (25 bp):
AAAAATGACCATTATACCCCTAGGG
Found at i:75021850 original size:9 final size:9
Alignment explanation
Indices: 75021838--75021894 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
75021828 TTTGATAAAC
75021838 ATGATATGT
1 ATGATATGT
*
75021847 ATGATATGCAC
1 ATGATATG--T
*
75021858 ATGACATGT
1 ATGATATGT
*
75021867 ATGATATGCAC
1 ATGATATG--T
75021878 ATGATATGT
1 ATGATATGT
75021887 ATGATATG
1 ATGATATG
75021895 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:75021861 original size:20 final size:20
Alignment explanation
Indices: 75021836--75021906 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
75021826 ATTTTGATAA
75021836 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
75021856 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
75021876 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
75021896 ACATGAGATGT
1 ACATGATATGT
75021907 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:75021883 original size:11 final size:11
Alignment explanation
Indices: 75021847--75021901 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
75021837 CATGATATGT
75021847 ATGATATGCAC
1 ATGATATGCAC
* *
75021858 ATGACATG--T
1 ATGATATGCAC
75021867 ATGATATGCAC
1 ATGATATGCAC
*
75021878 ATGATATG--T
1 ATGATATGCAC
75021887 ATGATATGCAC
1 ATGATATGCAC
75021898 ATGA
1 ATGA
75021902 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:75022008 original size:24 final size:24
Alignment explanation
Indices: 75021951--75022127 Score: 268
Period size: 24 Copynumber: 7.4 Consensus size: 24
75021941 GGAGGAAGTG
75021951 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
75021975 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
75021998 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
75022022 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
75022046 CAAAAGGGTTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
75022070 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
75022093 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
75022117 TAAAAGAGGCT
1 CAAAAG-GGCT
75022128 AGGCCTCCAG
Statistics
Matches: 141, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
23 42 0.30
24 95 0.67
25 4 0.03
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:75022020 original size:47 final size:47
Alignment explanation
Indices: 75021951--75022120 Score: 286
Period size: 47 Copynumber: 3.6 Consensus size: 47
75021941 GGAGGAAGTG
75021951 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
75021998 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
* *
75022046 CAAAAGGGTTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
75022093 TAAAAGGGCTTTTGCCCCAGTTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAA
75022121 AGAGGCTAGG
Statistics
Matches: 114, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
47 70 0.61
48 44 0.39
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:75022075 original size:71 final size:71
Alignment explanation
Indices: 75021951--75022127 Score: 266
Period size: 71 Copynumber: 2.5 Consensus size: 71
75021941 GGAGGAAGTG
*
75021951 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
75022016 AGTTAT
66 AGTTAT
* * *
75022022 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGTTTATGCCCTAGTTAT-TAAAGGGCTTATGCCC
1 CAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCC
75022086 CAGTTAT
65 CAGTTAT
* *
75022093 TAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCT
1 CAAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCT
75022128 AGGCCTCCAG
Statistics
Matches: 96, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
71 72 0.75
72 24 0.25
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (71 bp):
CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
AGTTAT
Found at i:75022372 original size:31 final size:31
Alignment explanation
Indices: 75022334--75022397 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
75022324 CGTTTACAGT
75022334 AAAGGCTTCAGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
* ** *
75022365 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
75022396 AA
1 AA
75022398 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:75029310 original size:39 final size:39
Alignment explanation
Indices: 75029216--75029437 Score: 261
Period size: 40 Copynumber: 5.6 Consensus size: 39
75029206 TACTCGTTCA
*
75029216 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCAC
*
75029255 AAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
*
75029295 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA-C
* * *
75029335 AATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* * * * *
75029373 AAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCAC
*
75029414 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
75029438 CATCATTCGA
Statistics
Matches: 159, Mismatches: 16, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
38 3 0.02
39 68 0.43
40 78 0.49
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
Found at i:75029317 original size:79 final size:80
Alignment explanation
Indices: 75029214--75029437 Score: 278
Period size: 79 Copynumber: 2.8 Consensus size: 80
75029204 GCTACTCGTT
* *
75029214 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
75029279 ATTTAGTAACTCGCA
66 AATTAGTAACTCGCA
* * *
75029294 C-AATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
75029356 GAATTAGTATCTCGCA
65 GAATTAGTAACTCGCA
* * * * *
75029372 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
75029435 GGA
64 GGA
75029438 CATCATTCGA
Statistics
Matches: 123, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
78 26 0.21
79 77 0.63
80 20 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:75030635 original size:56 final size:56
Alignment explanation
Indices: 75030566--75030741 Score: 325
Period size: 56 Copynumber: 3.1 Consensus size: 56
75030556 TATTAGTTTA
*
75030566 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
* *
75030622 TAGCCCATTCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
75030678 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
75030734 TTGCCCAT
1 TTGCCCAT
75030742 CATCCCTTGT
Statistics
Matches: 115, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 115 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:75031662 original size:32 final size:33
Alignment explanation
Indices: 75031619--75031685 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 33
75031609 ATCAACTCCG
75031619 AAAATTTTACTATCACCAAGCTCGGTCCAAAAC
1 AAAATTTTACTATCACCAAGCTCGGTCCAAAAC
75031652 AAAA-TTTACTATCACCAAGCTCGGTCCAAAAC
1 AAAATTTTACTATCACCAAGCTCGGTCCAAAAC
75031684 AA
1 AA
75031686 TGGTGTACGG
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 30 0.88
33 4 0.12
ACGTcount: A:0.42, C:0.27, G:0.09, T:0.22
Consensus pattern (33 bp):
AAAATTTTACTATCACCAAGCTCGGTCCAAAAC
Found at i:75036610 original size:40 final size:40
Alignment explanation
Indices: 75036573--75036790 Score: 255
Period size: 40 Copynumber: 5.5 Consensus size: 40
75036563 GCTACTCGTT
* *
75036573 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
75036613 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
75036653 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * * *
75036693 CCAATGCCTTCGGG-CTTAGCCCTGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
75036732 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
75036773 CAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
75036791 GCCCAGACAT
Statistics
Matches: 155, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 110 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:75036757 original size:119 final size:119
Alignment explanation
Indices: 75036540--75036790 Score: 287
Period size: 119 Copynumber: 2.1 Consensus size: 119
75036530 AAATCATGTA
* * * **
75036540 CCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGT
1 CCTTCGGGACTTAACCGGATATAGCTACTCGTACAAATGCCTTCGGGACATAGCCCGAATATAGT
* *
75036605 AACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACAAATG
66 AACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAA-G
* * *
75036659 CCTTCGGGACTTAACCCGGATTTAG-TAACTCGTACCAATGCCTTCGGG-CTTAGCCCTGAAT-T
1 CCTTCGGGACTTAA-CCGGATATAGCT-ACTCGTACAAATGCCTTCGGGACATAGCCC-GAATAT
* ** * *
75036721 AGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAG
63 AGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAACTTAGCACAAAG
75036778 CCTTCGGGACTTA
1 CCTTCGGGACTTA
75036791 GCCCAGACAT
Statistics
Matches: 112, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 71 0.63
120 38 0.34
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (119 bp):
CCTTCGGGACTTAACCGGATATAGCTACTCGTACAAATGCCTTCGGGACATAGCCCGAATATAGT
AACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAAG
Found at i:75037991 original size:56 final size:56
Alignment explanation
Indices: 75037924--75038043 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
75037914 TATTAGTTTA
75037924 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
75037980 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
75038036 TTGCCCAT
1 TTGCCCAT
75038044 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:75040507 original size:9 final size:9
Alignment explanation
Indices: 75040495--75040551 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
75040485 TTTGATAAAC
75040495 ATGATATGT
1 ATGATATGT
*
75040504 ATGATATGCAC
1 ATGATATG--T
*
75040515 ATGACATGT
1 ATGATATGT
*
75040524 ATGATATGCAC
1 ATGATATG--T
75040535 ATGATATGT
1 ATGATATGT
75040544 ATGATATG
1 ATGATATG
75040552 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:75040518 original size:20 final size:20
Alignment explanation
Indices: 75040493--75040563 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
75040483 ATTTTGATAA
75040493 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
75040513 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
75040533 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
75040553 ACATGAGATGT
1 ACATGATATGT
75040564 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:75040540 original size:11 final size:11
Alignment explanation
Indices: 75040504--75040558 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
75040494 CATGATATGT
75040504 ATGATATGCAC
1 ATGATATGCAC
* *
75040515 ATGACATG--T
1 ATGATATGCAC
75040524 ATGATATGCAC
1 ATGATATGCAC
*
75040535 ATGATATG--T
1 ATGATATGCAC
75040544 ATGATATGCAC
1 ATGATATGCAC
75040555 ATGA
1 ATGA
75040559 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:75040636 original size:23 final size:23
Alignment explanation
Indices: 75040610--75040729 Score: 195
Period size: 23 Copynumber: 5.1 Consensus size: 23
75040600 AGGAAGTTCA
75040610 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
75040633 AAAGGGCTTATGCCCAAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
75040657 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
75040680 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
75040703 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
75040727 AAA
1 AAA
75040730 AGAGGCTAGG
Statistics
Matches: 90, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
23 47 0.52
24 43 0.48
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:75040665 original size:24 final size:23
Alignment explanation
Indices: 75040609--75040736 Score: 184
Period size: 24 Copynumber: 5.4 Consensus size: 23
75040599 GAGGAAGTTC
75040609 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
75040632 TAAAGGGCTTATGCCCAAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
75040655 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
75040679 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
75040703 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
75040727 AAAAGAGGCT
1 AAAAG-GGCT
75040737 AGGCCTCCAG
Statistics
Matches: 95, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
23 42 0.44
24 49 0.52
25 4 0.04
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:75040670 original size:47 final size:47
Alignment explanation
Indices: 75040607--75040729 Score: 219
Period size: 47 Copynumber: 2.6 Consensus size: 47
75040597 TGGAGGAAGT
75040607 TCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCAAGTTA
1 TCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCAAGTTA
*
75040654 TCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTA
1 TCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCAAGTTA
* *
75040701 TTAAAAGGGCTTTTGCCCCAGTTATTAAA
1 TCAAAAGGGCTTATGCCCCAGTTATTAAA
75040730 AGAGGCTAGG
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29
Consensus pattern (47 bp):
TCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCAAGTTA
Found at i:75040978 original size:31 final size:31
Alignment explanation
Indices: 75040943--75041006 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
75040933 CGTTTACAGT
75040943 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
75040974 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
75041005 AA
1 AA
75041007 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:75042665 original size:60 final size:60
Alignment explanation
Indices: 75042565--75042701 Score: 172
Period size: 60 Copynumber: 2.3 Consensus size: 60
75042555 AACTATGTTA
* *
75042565 ATATGGGCAAGGCCCAATATATCTCGACTTGTAATAGGGCTACGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATATCTCGACTTGTAATAGGGCTACGGCCCAGATTAATACTG
* * *
75042625 ATATGGGCTAGGCCCAATATA-CTCTGA-TACTGTAA-GGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATATCTC-GACT--TGTAATAGGGCTACGGCCCAGATTAATACTG
75042685 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
75042702 GTTAACACTG
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
59 4 0.06
60 52 0.76
61 12 0.18
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAATATATCTCGACTTGTAATAGGGCTACGGCCCAGATTAATACTG
Found at i:75042733 original size:61 final size:61
Alignment explanation
Indices: 75042565--75042734 Score: 156
Period size: 60 Copynumber: 2.8 Consensus size: 61
75042555 AACTATGTTA
* * *
75042565 ATATGGGCAAGGCCCAATATA-TCTCG--ACTTGTAATAGGGCTACGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATACACT-GATAC-TGTAATAGGGCTACGGCCCAGATTAATACTG
* * * *
75042625 ATATGGGCTAGGCCCAATATACTCTGATACTGTAA-GGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACACTGATACTGTAATAGGGCTACGGCCCAGATTAATACTG
* **
75042685 ATATGGGCTAAGGCCCAGT-TAACACTGATTTTG-AATAGGGCTTA-GGCCCA
1 ATATGGGCT-AGGCCCAATAT-ACACTGATACTGTAATAGGGC-TACGGCCCA
75042735 ATAAAGTTTG
Statistics
Matches: 93, Mismatches: 10, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
60 54 0.58
61 35 0.38
62 4 0.04
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (61 bp):
ATATGGGCTAGGCCCAATATACACTGATACTGTAATAGGGCTACGGCCCAGATTAATACTG
Found at i:75044083 original size:11 final size:11
Alignment explanation
Indices: 75044067--75044102 Score: 72
Period size: 11 Copynumber: 3.3 Consensus size: 11
75044057 TGTTGTATAG
75044067 GCTTATACTAA
1 GCTTATACTAA
75044078 GCTTATACTAA
1 GCTTATACTAA
75044089 GCTTATACTAA
1 GCTTATACTAA
75044100 GCT
1 GCT
75044103 AATGGCATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.36
Consensus pattern (11 bp):
GCTTATACTAA
Found at i:75045966 original size:16 final size:16
Alignment explanation
Indices: 75045945--75045982 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
75045935 GTAGATCAGC
*
75045945 AAAAGCCAAAATGCTG
1 AAAAGCCAAAATGCCG
75045961 AAAAGCCAAAATGCCG
1 AAAAGCCAAAATGCCG
75045977 AAAAGC
1 AAAAGC
75045983 TGAAAGTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.53, C:0.21, G:0.18, T:0.08
Consensus pattern (16 bp):
AAAAGCCAAAATGCCG
Found at i:75046242 original size:29 final size:29
Alignment explanation
Indices: 75046203--75046314 Score: 181
Period size: 29 Copynumber: 3.9 Consensus size: 29
75046193 GCATGAATAT
*
75046203 AATGTGATTTGGGCCTAATGGGCCACATA
1 AATGTGATTTGGGCCTAATAGGCCACATA
75046232 AATGTGATTTGGGCCTAATAGGCCACATA
1 AATGTGATTTGGGCCTAATAGGCCACATA
*
75046261 AATGTGATTTGGGCCTAA-AGGGCCATATA
1 AATGTGATTTGGGCCTAATA-GGCCACATA
*
75046290 AATGTGACTTGGGCCTAATAGGCCA
1 AATGTGATTTGGGCCTAATAGGCCA
75046315 TGGGAATATA
Statistics
Matches: 78, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
28 1 0.01
29 76 0.97
30 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATAGGCCACATA
Found at i:75046655 original size:26 final size:27
Alignment explanation
Indices: 75046626--75046678 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
75046616 AACCATAATT
* *
75046626 AAGGGAAAATT-ACAAAAATGCCCCTA
1 AAGGCAAAATTGACAAAAATACCCCTA
*
75046652 AAGGCAAAATTGACCAAAATACCCCTA
1 AAGGCAAAATTGACAAAAATACCCCTA
75046679 GGCGTTGAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.49, C:0.23, G:0.13, T:0.15
Consensus pattern (27 bp):
AAGGCAAAATTGACAAAAATACCCCTA
Found at i:75054373 original size:12 final size:14
Alignment explanation
Indices: 75054358--75054389 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
75054348 GTGAGAACAC
75054358 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
75054370 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
75054384 ATGTGT
1 ATGTGT
75054390 TTAAAATGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:75054480 original size:50 final size:50
Alignment explanation
Indices: 75054355--75054543 Score: 189
Period size: 50 Copynumber: 3.7 Consensus size: 50
75054345 GTTGTGAGAA
* * * *** * *
75054355 CACATGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGG--TTAGAT
* *
75054407 CACGTGTGCAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGAT
* * * *
75054457 CACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GGTTAGAT
* * * *
75054508 CACATGTGTGGTACTAAGTGTAGGCCACTATGTGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA
75054544 AAAGATAGAT
Statistics
Matches: 115, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
50 43 0.37
51 37 0.32
52 35 0.30
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGAT
Found at i:75054551 original size:51 final size:51
Alignment explanation
Indices: 75054355--75054637 Score: 178
Period size: 51 Copynumber: 5.5 Consensus size: 51
75054345 GTTGTGAGAA
* * * * * * *
75054355 CACATGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAA-ATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCCACTATGTG-TAAAAGATAG-CTTAGAT
* * * * ** *
75054407 CACGTGTGCAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GGTTAGAT
1 CACATGTGTAGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTAGAT
* * * *** *
75054457 CACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTAGAT
* * * * *
75054508 CACATGTGTGGTACTAAGTGTAGGCCACTATGTGTAAAAGATAGATTTGGT
1 CACATGTGTAGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTAGAT
* * * * * * * *
75054559 CACAAGTGTGGTACTATGTGAAGGTCACTTTGTG-AAGAAGGTAGCTTTGA-
1 CACATGTGTAGTACTAAGTGCAGGCCACTATGTGTAA-AAGATAGCTTAGAT
* *
75054609 CTACAAGGGTAGTACTAAGTGCAGGCCAC
1 C-ACATGTGTAGTACTAAGTGCAGGCCAC
75054638 CGGGCATCCA
Statistics
Matches: 187, Mismatches: 40, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
50 46 0.25
51 110 0.59
52 31 0.17
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (51 bp):
CACATGTGTAGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTAGAT
Found at i:75060144 original size:50 final size:51
Alignment explanation
Indices: 75060069--75060195 Score: 177
Period size: 50 Copynumber: 2.5 Consensus size: 51
75060059 TCATGGAAAT
*
75060069 AAGTGATAAGTGATAGC-TCTGGCTACACTTATTTAATCAAGGACAAATGA-
1 AAGTGATAAGTGATAGCTTC-GGCTACACTTATCTAATCAAGGACAAATGAC
* *
75060119 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAC
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGACAAATGAC
* * *
75060170 AAGTGAAAAGTGGTAGCTTTGGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
75060196 CTGATCAGTG
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
50 44 0.65
51 24 0.35
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (51 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGACAAATGAC
Found at i:75060209 original size:31 final size:31
Alignment explanation
Indices: 75060171--75060319 Score: 208
Period size: 31 Copynumber: 4.8 Consensus size: 31
75060161 ACAAATGACA
*
75060171 AGTGAAAAGTGGTAGCTTTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
75060202 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
75060233 AGTGAAAAGTGGTATCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * * *
75060264 AGTGAAAAATGGTAGCTCCGACTACCTGATT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
75060295 AGTGAATAGTGGTAGCTTCGACTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
75060320 AAGTGACAAG
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 106 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:75060492 original size:49 final size:49
Alignment explanation
Indices: 75060341--75060559 Score: 205
Period size: 47 Copynumber: 4.7 Consensus size: 49
75060331 GATTTCTGTA
* * * * * *
75060341 TAAGACCATATCTGGGATATGGCATCG--GTGTGATATATG-CTACTGTA
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTAC-GTG
* * * *
75060388 TAAGACCATATCTGGGATATGGCATC-A-GTGAGATATGTGATT-CGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
75060434 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
* * *
75060483 TAAGACCATAGTTGGGCTATGGCATCGATA--T-ATA----AATATGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
75060525 TAAGACCATAGCTGGGCTATGGCATC-ATTATGTGA
1 TAAGACCATAGCTGGGCTATGGCATCGA-TATGTGA
75060560 ACATGTGTAA
Statistics
Matches: 151, Mismatches: 12, Indels: 20
0.83 0.07 0.11
Matches are distributed among these distances:
41 1 0.01
42 33 0.22
44 1 0.01
45 1 0.01
46 29 0.19
47 39 0.26
48 14 0.09
49 33 0.22
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (49 bp):
TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
Found at i:75060527 original size:42 final size:42
Alignment explanation
Indices: 75060480--75060593 Score: 149
Period size: 42 Copynumber: 2.7 Consensus size: 42
75060470 ATGTGATTAC
*
75060480 GTGTAAGACCATAGTTGGGCTATGGCATCGA-TATATAAATAT
1 GTGTAAGACCATAGTTGGGCTATGGCATC-ATTATATAAACAT
* * *
75060522 GTGTAAGACCATAGCTGGGCTATGGCATCATTATGTGAACAT
1 GTGTAAGACCATAGTTGGGCTATGGCATCATTATATAAACAT
***
75060564 GTGTAAGACCATAGTTAAACTATGGCATCA
1 GTGTAAGACCATAGTTGGGCTATGGCATCA
75060594 AGAAAACGAA
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
41 1 0.02
42 62 0.98
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATAGTTGGGCTATGGCATCATTATATAAACAT
Found at i:75080495 original size:23 final size:21
Alignment explanation
Indices: 75080469--75080518 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
75080459 AGGCACTTTA
75080469 TGTGTCGTATTTCAAGCACCTCG
1 TGTGTCGTA--TCAAGCACCTCG
*
75080492 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAAGCACCTCG
75080513 TGTGTC
1 TGTGTC
75080519 ATTTTAGGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 17 0.65
23 9 0.35
ACGTcount: A:0.14, C:0.26, G:0.26, T:0.34
Consensus pattern (21 bp):
TGTGTCGTATCAAGCACCTCG
Found at i:75080527 original size:21 final size:21
Alignment explanation
Indices: 75080484--75080529 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
75080474 CGTATTTCAA
*
75080484 GCACCTCGTGTGTCGTATCAG
1 GCACCTCGTGTGTCATATCAG
* *
75080505 GCACCTCGTGTGTCATTTTAG
1 GCACCTCGTGTGTCATATCAG
75080526 GCAC
1 GCAC
75080530 TTTATGTGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.15, C:0.28, G:0.26, T:0.30
Consensus pattern (21 bp):
GCACCTCGTGTGTCATATCAG
Found at i:75081922 original size:20 final size:21
Alignment explanation
Indices: 75081884--75081923 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
75081874 CAGCCAAGGC
75081884 CATTATAGGCCGTGTGGGCCAG
1 CATTATAGGCCG-GTGGGCCAG
75081906 CATTATAGGCC-GTGGGCC
1 CATTATAGGCCGGTGGGCC
75081924 CCTTTTCACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
22 11 0.61
ACGTcount: A:0.17, C:0.25, G:0.35, T:0.23
Consensus pattern (21 bp):
CATTATAGGCCGGTGGGCCAG
Found at i:75087515 original size:16 final size:17
Alignment explanation
Indices: 75087494--75087531 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
75087484 ATTAAATAAT
*
75087494 TAAAATAAAGAAAC-AA
1 TAAAATAAACAAACGAA
*
75087510 TAAAATAGACAAACGAA
1 TAAAATAAACAAACGAA
75087527 TAAAA
1 TAAAA
75087532 AAATTAAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.71, C:0.08, G:0.08, T:0.13
Consensus pattern (17 bp):
TAAAATAAACAAACGAA
Found at i:75087977 original size:13 final size:13
Alignment explanation
Indices: 75087955--75087986 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
75087945 GAATCGAAAG
75087955 AGAA-AAGATATT
1 AGAATAAGATATT
75087967 AGAATAAGATATT
1 AGAATAAGATATT
75087980 AGAATAA
1 AGAATAA
75087987 TCCTAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (13 bp):
AGAATAAGATATT
Found at i:75088747 original size:17 final size:17
Alignment explanation
Indices: 75088717--75088751 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
75088707 AATATGGGAA
* *
75088717 GTAATCTTAGAAGATTT
1 GTAATATTAAAAGATTT
75088734 GTAATATTAAAAGATTT
1 GTAATATTAAAAGATTT
75088751 G
1 G
75088752 ATTTTATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.40, C:0.03, G:0.17, T:0.40
Consensus pattern (17 bp):
GTAATATTAAAAGATTT
Found at i:75088966 original size:18 final size:19
Alignment explanation
Indices: 75088926--75088967 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
75088916 ATTCACTCAA
75088926 ATTCTTGTGTACTTTTGCT
1 ATTCTTGTGTACTTTTGCT
75088945 -TTCTTGTG-ACATTTT-CT
1 ATTCTTGTGTAC-TTTTGCT
75088962 ATTCTT
1 ATTCTT
75088968 TCGAGCTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.12, C:0.17, G:0.12, T:0.60
Consensus pattern (19 bp):
ATTCTTGTGTACTTTTGCT
Found at i:75090030 original size:23 final size:23
Alignment explanation
Indices: 75090004--75090073 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
75089994 TTTATTATTA
75090004 ATTTTAAAAATTTTAAAATATAT
1 ATTTTAAAAATTTTAAAATATAT
* * *
75090027 ATTTGAAATATTTTATAATATAT
1 ATTTTAAAAATTTTAAAATATAT
75090050 A-TTT-AAAATTTT-AAATATAT
1 ATTTTAAAAATTTTAAAATATAT
75090070 ATTT
1 ATTT
75090074 GAAATTATTT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
20 8 0.20
21 9 0.22
22 2 0.05
23 21 0.52
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (23 bp):
ATTTTAAAAATTTTAAAATATAT
Found at i:75090092 original size:32 final size:33
Alignment explanation
Indices: 75090051--75090140 Score: 110
Period size: 35 Copynumber: 2.7 Consensus size: 33
75090041 ATAATATATA
*
75090051 TTTAAAATTTTAAATATATATTTGAAA-TTATT
1 TTTAAAATTTTAAATATATATTTAAAAGTTATT
* *
75090083 TTTAAAATTTTGAATATATTTTTTAAAATGTTATT
1 TTTAAAATTTTAAATATA-TATTTAAAA-GTTATT
* *
75090118 TTTTAAATATTAAATATATATTT
1 TTTAAAATTTTAAATATATATTT
75090141 TTAATAATAT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
32 17 0.35
33 7 0.15
34 4 0.08
35 20 0.42
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (33 bp):
TTTAAAATTTTAAATATATATTTAAAAGTTATT
Found at i:75090149 original size:23 final size:22
Alignment explanation
Indices: 75090106--75090157 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 22
75090096 ATATATTTTT
* *
75090106 TAAAATGT-TATTTTTTAAATA
1 TAAAATATATATTTTTAAAATA
*
75090127 TTAAATATATATTTTTAATAATA
1 TAAAATATATATTTTTAA-AATA
75090150 TAAAATAT
1 TAAAATAT
75090158 TTAAATATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 6 0.24
22 8 0.32
23 11 0.44
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (22 bp):
TAAAATATATATTTTTAAAATA
Found at i:75090339 original size:20 final size:21
Alignment explanation
Indices: 75090250--75090339 Score: 93
Period size: 20 Copynumber: 4.5 Consensus size: 21
75090240 TTGAAAGGTC
* *
75090250 ATATATTTAAAATATT--TAA
1 ATATATTTAAATTATTAAAAA
*
75090269 ATAT-TTTATATTATTAAAAA
1 ATATATTTAAATTATTAAAAA
75090289 ATATATTT-AA-TATTAAAAA
1 ATATATTTAAATTATTAAAAA
*
75090308 ATAATATTTAAATTTTTAAAAA
1 AT-ATATTTAAATTATTAAAAA
75090330 ATA-ATTTAAA
1 ATATATTTAAA
75090340 AATAATATTT
Statistics
Matches: 60, Mismatches: 5, Indels: 11
0.79 0.07 0.14
Matches are distributed among these distances:
18 9 0.15
19 15 0.25
20 20 0.33
21 6 0.10
22 10 0.17
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
ATATATTTAAATTATTAAAAA
Found at i:75090341 original size:33 final size:32
Alignment explanation
Indices: 75090304--75090594 Score: 145
Period size: 33 Copynumber: 8.9 Consensus size: 32
75090294 TTTAATATTA
* *
75090304 AAAAATAATATTTAAATTTTTAAAAAATAATTT
1 AAAAATAATATTTAAA-ATTTAAAAAATAATTC
75090337 AAAAATAATATTTAAAATTTAGAAAAATAAATTC
1 AAAAATAATATTTAAAATTTA-AAAAAT-AATTC
*
75090371 AAAAATATATATTTAAAATTTAAAAAATATATATT
1 AAAAATA-ATATTTAAAATTTAAAAAATA-AT-TC
* *
75090406 ATAAAA-CAT-TTTAAATATACATT-TAAAAT-ATT-
1 A-AAAATAATATTTAAA-AT---TTAAAAAATAATTC
* * ****
75090438 ATAAAACTAATA-AT-AAATTTGAAACGCCATATC
1 A-AAAA-TAATATTTAAAATTTAAAAAATAAT-TC
*** * ** * *
75090471 TTTAA-AATATTTAAACTTT-TTATATTATT-
1 AAAAATAATATTTAAAATTTAAAAAATAATTC
*
75090500 AAAAAT-ATATTTAAAATTTTAAAAAATAATTT
1 AAAAATAATATTTAAAA-TTTAAAAAATAATTC
*
75090532 TAAAATAATATTTAAAATTTAGAAAAATAATTTC
1 AAAAATAATATTTAAAATTTA-AAAAATAA-TTC
*
75090566 AAAAATATATATTTAAAATTTTAAAAATA
1 AAAAATA-ATATTTAAAATTTAAAAAATA
75090595 TGTATATTAT
Statistics
Matches: 197, Mismatches: 34, Indels: 53
0.69 0.12 0.19
Matches are distributed among these distances:
29 13 0.07
30 10 0.05
31 12 0.06
32 29 0.15
33 50 0.25
34 43 0.22
35 29 0.15
36 9 0.05
37 2 0.01
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (32 bp):
AAAAATAATATTTAAAATTTAAAAAATAATTC
Found at i:75090355 original size:20 final size:20
Alignment explanation
Indices: 75090285--75090411 Score: 66
Period size: 19 Copynumber: 6.8 Consensus size: 20
75090275 TATATTATTA
* *
75090285 AAAAAT-ATATTTAATATTA
1 AAAAATAATATTTAAAATTT
75090304 AAAAATAATATTT-AAATTT
1 AAAAATAATATTTAAAATTT
**
75090323 TTAAA-AA-A--T--AATTT
1 AAAAATAATATTTAAAATTT
75090337 AAAAATAATATTTAAAATTT
1 AAAAATAATATTTAAAATTT
* *
75090357 -AGAA-AA-A--T-AAATTC
1 AAAAATAATATTTAAAATTT
75090371 AAAAATATATATTTAAAATTT
1 AAAAATA-ATATTTAAAATTT
75090392 AAAAAATATATATTATAAAA
1 -AAAAATA-ATATT-TAAAA
75090412 CATTTTAAAT
Statistics
Matches: 82, Mismatches: 10, Indels: 28
0.68 0.08 0.23
Matches are distributed among these distances:
14 13 0.16
15 7 0.09
16 2 0.02
17 3 0.04
18 6 0.07
19 16 0.20
20 12 0.15
21 5 0.06
22 13 0.16
23 5 0.06
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.38
Consensus pattern (20 bp):
AAAAATAATATTTAAAATTT
Found at i:75090442 original size:22 final size:22
Alignment explanation
Indices: 75090373--75090442 Score: 79
Period size: 22 Copynumber: 3.1 Consensus size: 22
75090363 ATAAATTCAA
*
75090373 AAATATATATTTAAAAT-TTAAA
1 AAATATATATTTAAAATATT-AT
* *
75090395 AAATATATATTATAAAACATTTT
1 AAATATATATT-TAAAATATTAT
*
75090418 AAATATACATTTAAAATATTAT
1 AAATATATATTTAAAATATTAT
75090440 AAA
1 AAA
75090443 ACTAATAATA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
22 23 0.57
23 15 0.38
24 2 0.05
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (22 bp):
AAATATATATTTAAAATATTAT
Found at i:75090532 original size:13 final size:14
Alignment explanation
Indices: 75090514--75090549 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
75090504 ATATATTTAA
75090514 AATTTTAAAA-AAT
1 AATTTTAAAATAAT
75090527 AATTTTAAAATAAT
1 AATTTTAAAATAAT
75090541 -A-TTTAAAAT
1 AATTTTAAAAT
75090550 TTAGAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 8 0.36
13 11 0.50
14 3 0.14
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
AATTTTAAAATAAT
Found at i:75090620 original size:25 final size:24
Alignment explanation
Indices: 75090560--75090617 Score: 66
Period size: 22 Copynumber: 2.4 Consensus size: 24
75090550 TTAGAAAAAT
75090560 AATTTCAAAAATA--TATATTTAAA
1 AATTT-AAAAATATGTATATTTAAA
*
75090583 ATTTTAAAAATATGTATATTATAAA
1 AATTTAAAAATATGTATATT-TAAA
75090608 ACATTTAAAA
1 A-ATTTAAAA
75090618 TATACATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
22 7 0.24
23 4 0.14
24 6 0.21
25 5 0.17
26 7 0.24
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (24 bp):
AATTTAAAAATATGTATATTTAAA
Found at i:75090687 original size:4 final size:5
Alignment explanation
Indices: 75090643--75090693 Score: 61
Period size: 5 Copynumber: 10.2 Consensus size: 5
75090633 TTTTAAAATT
*
75090643 AATAA TAATAA AATAA AATAA AATAA AATAA AAT-G AAT-A AATAA AGATAA
1 AATAA -AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA A-ATAA
75090693 A
1 A
75090694 GACAAAAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
4 6 0.15
5 25 0.61
6 10 0.24
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.22
Consensus pattern (5 bp):
AATAA
Found at i:75090713 original size:195 final size:195
Alignment explanation
Indices: 75090321--75090720 Score: 452
Period size: 195 Copynumber: 2.1 Consensus size: 195
75090311 ATATTTAAAT
75090321 TTTTAAAAAATAATTTAAAAATAATATTTAAAATTTAGAAAAATAAATTCAAAAATATATATTTA
1 TTTTAAAAAATAATTTAAAAATAATATTTAAAATTTAGAAAAATAAATTCAAAAATATATATTTA
*
75090386 AAATTTAAAAAATATATATTATAAAACATTTTAAATATACATTTAAAATATTATAAAACTAATAA
66 AAATTTAAAAAATATATATTATAAAACATTTAAAATATACATTTAAAATATTATAAAACTAATAA
** * *** *** * **** * ** **
75090451 TAAATTTGAAACGCCATATCTTTAAAATATTTAAACTTTTTATATTATTAAAAATATATTTAAAA
131 TAAAAATAAAACAAAATATAAATAAAATATATAAACTAAAGATATAAACAAAAATATATAAAAAA
* *
75090516 TTTTAAAAAATAATTTTAAAATAATATTTAAAATTTAGAAAAATAATTTCAAAAATATATATTTA
1 TTTTAAAAAATAATTTAAAAATAATATTTAAAATTTAGAAAAATAAATTCAAAAATATATATTTA
* * * * *
75090581 AAATTTTAAAAATATGTATATTATAAAACATTTAAAATATACATTTCAAATTTTTTAAAATTAAT
66 AAA-TTTAAAAA-ATATATATTATAAAACATTTAAAATATACATTTAAAATATTATAAAACTAAT
*
75090646 AATAATAAAATAAAATAAAATA-AAATAAAATGA-ATAAA-TAAAGATA-AAGACAAAAAT-TA-
129 AAT-A-AAAATAAAACAAAATATAAATAAAAT-ATATAAACTAAAGATATAA-ACAAAAATATAT
75090705 AAAAAA
190 AAAAAA
75090711 TTTTAAAAAA
1 TTTTAAAAAA
75090721 ATAAGTGTAA
Statistics
Matches: 171, Mismatches: 28, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
195 80 0.47
196 11 0.06
197 59 0.35
198 11 0.06
199 10 0.06
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (195 bp):
TTTTAAAAAATAATTTAAAAATAATATTTAAAATTTAGAAAAATAAATTCAAAAATATATATTTA
AAATTTAAAAAATATATATTATAAAACATTTAAAATATACATTTAAAATATTATAAAACTAATAA
TAAAAATAAAACAAAATATAAATAAAATATATAAACTAAAGATATAAACAAAAATATATAAAAAA
Found at i:75090752 original size:44 final size:43
Alignment explanation
Indices: 75090686--75090768 Score: 103
Period size: 44 Copynumber: 1.9 Consensus size: 43
75090676 TGAATAAATA
* * * **
75090686 AAGATAAAGACAAAAATTAAAAAAATTTTAAAAAAATAAGTGT
1 AAGAGAAAGACAAAAATAAAAAAAAATAAAAAAAAATAAGTGT
*
75090729 AAGAGAAATGACAAAAGTAAAAAAAAATAAAAAAAAATAA
1 AAGAGAAA-GACAAAAATAAAAAAAAATAAAAAAAAATAA
75090769 CAATGGGTGT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
43 7 0.21
44 26 0.79
ACGTcount: A:0.71, C:0.02, G:0.10, T:0.17
Consensus pattern (43 bp):
AAGAGAAAGACAAAAATAAAAAAAAATAAAAAAAAATAAGTGT
Found at i:75093194 original size:152 final size:154
Alignment explanation
Indices: 75092993--75093303 Score: 470
Period size: 152 Copynumber: 2.0 Consensus size: 154
75092983 ATGATACAAG
* * *
75092993 TTGTATTGCAATTTTTTGATGGACATAGAGATATTGGTTCTAATTGCAATCTGTTTTATT-CCCC
1 TTGTATTGCAAATTTTTGATAGACATA-AGATATTGGTTCTAATTGCAATCTG-TTAATTCCCCC
* *
75093057 TAAATGGAA-TTTGAT-TCGATACTTGGCTTTATTAGCCAAC-ATATATGGAAAAATCAAAATAG
64 TAAATGGAACTTT-ATCT-GACACTTAGCTTTATTAGCCAACAATATATGGAAAAATCAAAATAG
*
75093119 GCCTTGAAGCTGACAATACAATATTTTA
127 GCCTTGAAGCTAACAATACAATATTTTA
*
75093147 TTGTTTTGCAAATTTTTGATAGACAT-AGATATTGGTTCTAATTGCAATCTGTTAATTCCCCCTA
1 TTGTATTGCAAATTTTTGATAGACATAAGATATTGGTTCTAATTGCAATCTGTTAATTCCCCCTA
*
75093211 AATGGAACTTTATCTGGCACTTAGCTTTATTAGCCAACAATATATGGAAAAATCAAAATAGGCCT
66 AATGGAACTTTATCTGACACTTAGCTTTATTAGCCAACAATATATGGAAAAATCAAAATAGGCCT
*
75093276 TGAAGCTAACTATACAATATTTTA
131 TGAAGCTAACAATACAATATTTTA
75093300 TTGT
1 TTGT
75093304 GCATATGACC
Statistics
Matches: 144, Mismatches: 9, Indels: 9
0.89 0.06 0.06
Matches are distributed among these distances:
151 5 0.03
152 60 0.42
153 56 0.39
154 23 0.16
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (154 bp):
TTGTATTGCAAATTTTTGATAGACATAAGATATTGGTTCTAATTGCAATCTGTTAATTCCCCCTA
AATGGAACTTTATCTGACACTTAGCTTTATTAGCCAACAATATATGGAAAAATCAAAATAGGCCT
TGAAGCTAACAATACAATATTTTA
Found at i:75096522 original size:41 final size:44
Alignment explanation
Indices: 75096450--75096531 Score: 109
Period size: 43 Copynumber: 1.9 Consensus size: 44
75096440 ATCTATATTT
*
75096450 TAAATAAGATCAAAATTTTAAAAATTAAAAATTACAGATTTAAAA
1 TAAATAAGATCAAAATTATAAAAATTAAAAATTACA-ATTTAAAA
*
75096495 TAAATAA-AT-AAAATTATAAAAA-T-AAAATTTCAATTTA
1 TAAATAAGATCAAAATTATAAAAATTAAAAATTACAATTTA
75096532 TACATAATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
40 5 0.14
41 8 0.23
42 1 0.03
43 12 0.34
44 2 0.06
45 7 0.20
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (44 bp):
TAAATAAGATCAAAATTATAAAAATTAAAAATTACAATTTAAAA
Found at i:75103267 original size:33 final size:34
Alignment explanation
Indices: 75103207--75103314 Score: 98
Period size: 34 Copynumber: 3.2 Consensus size: 34
75103197 ATTGCATACT
* **
75103207 ATACTGATTCTGTAATGGGCTTTGGCCC-CACTG
1 ATACTGATTCTGAAATGGGCTCAGGCCCACACTG
75103240 ATACTG-TTACTGAAATGGGCTCAGGCCCACACT-
1 ATACTGATT-CTGAAATGGGCTCAGGCCCACACTG
* * *
75103273 ATTTCTGATTCTGAAATAGGCTAAGGCCCTA-ACTG
1 A-TACTGATTCTGAAATGGGCTCAGGCCC-ACACTG
*
75103308 AAACTGA
1 ATACTGA
75103315 AAGGGCTTAG
Statistics
Matches: 61, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
32 2 0.03
33 23 0.38
34 32 0.52
35 4 0.07
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (34 bp):
ATACTGATTCTGAAATGGGCTCAGGCCCACACTG
Found at i:75125402 original size:43 final size:42
Alignment explanation
Indices: 75125290--75125451 Score: 148
Period size: 43 Copynumber: 3.8 Consensus size: 42
75125280 CAATGCGAAC
* * * *
75125290 GTCCCAGACATGGTCTTACATGTAATCAAATATCAATGACACT
1 GTCCCAGACATGGTCTTACACGAAATCAAATA-CGATGCCACT
* * * *
75125333 GTCCTAAACAGGGTCTTACAAGAAATCAAATACGATGCCGA-T
1 GTCCCAGACATGGTCTTACACGAAATCAAATACGATGCC-ACT
* *
75125375 ATCCCAGACATGGTCTTACACGTAAATCATAAGT-CGATGCCAGT
1 GTCCCAGACATGGTCTTACACG-AAATCA-AA-TACGATGCCACT
* * *
75125419 GTCCTAGACGTGGTCTTACACGAAAACAAATAC
1 GTCCCAGACATGGTCTTACACGAAATCAAATAC
75125452 CGAATCCTAT
Statistics
Matches: 97, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
41 1 0.01
42 26 0.27
43 40 0.41
44 29 0.30
45 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.24
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGAAATCAAATACGATGCCACT
Found at i:75125436 original size:86 final size:85
Alignment explanation
Indices: 75125291--75125451 Score: 209
Period size: 86 Copynumber: 1.9 Consensus size: 85
75125281 AATGCGAACG
*
75125291 TCCCAGACATGGTCTTACATGTAATCAAATATCAATGACACTGTCCTAAACAGGGTCTTACAAGA
1 TCCCAGACATGGTCTTACACGTAATCAAATATCAATGACACTGTCCTAAACAGGGTCTTACAAGA
*
75125356 AATCAAATACGATGCCGATA
66 AAACAAATACGATGCCGATA
* * * * *
75125376 TCCCAGACATGGTCTTACACGTAAATCATAA-GTCGATGCCAGTGTCCTAGAC-GTGGTCTTACA
1 TCCCAGACATGGTCTTACACGT-AATCA-AATATCAATGACACTGTCCTAAACAG-GGTCTTACA
*
75125439 CGAAAACAAATAC
63 AGAAAACAAATAC
75125452 CGAATCCTAT
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
85 22 0.34
86 41 0.63
87 2 0.03
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (85 bp):
TCCCAGACATGGTCTTACACGTAATCAAATATCAATGACACTGTCCTAAACAGGGTCTTACAAGA
AAACAAATACGATGCCGATA
Found at i:75132711 original size:46 final size:46
Alignment explanation
Indices: 75132644--75132902 Score: 237
Period size: 46 Copynumber: 5.6 Consensus size: 46
75132634 TGTAACCCGC
*
75132644 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCAT
* *
75132690 CCATAAGTGAACTCGGACTCAATTCAACGAGCTCG-G-ATGC-CTAGT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCATTCGC-A-T
* *** * *
75132735 ACATCTCTCAAACTCGGACTCAACTCAACGAGTTC-AGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGAG-CATTCGCAT
* *
75132782 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTG-G-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCATTCGC-A--T
* *** *
75132828 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTC-AGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGAG-CATTCGCAT
75132875 CCATAAGTGAACTCGGACTCAACTCAAC
1 CCATAAGTGAACTCGGACTCAACTCAAC
75132903 AAGTTCGGAT
Statistics
Matches: 167, Mismatches: 30, Indels: 32
0.73 0.13 0.14
Matches are distributed among these distances:
43 2 0.01
44 7 0.04
45 6 0.04
46 107 0.64
47 35 0.21
48 4 0.02
49 5 0.03
50 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCAT
Found at i:75132764 original size:92 final size:93
Alignment explanation
Indices: 75132653--75132915 Score: 440
Period size: 93 Copynumber: 2.8 Consensus size: 93
75132643 CCCATAAGTG
* * *
75132653 AACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCATAAGTGAACTCGGACTCAATTCAA
1 AACTCGGACTCAACTCAACGAGTTCAGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75132717 CGAGCTCGGATGCCTAG-TACATCTCTCA
65 CGAGCTCGGATGCCTAGTTACATCTCTCA
75132745 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
* *
75132810 GAGCTTGGATGCCTAGTTACATCTCTCG
66 GAGCTCGGATGCCTAGTTACATCTCTCA
75132838 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
* *
75132903 AAGTTCGGATGCC
66 GAGCTCGGATGCC
75132916 CAAATATCCT
Statistics
Matches: 161, Mismatches: 8, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
92 74 0.46
93 87 0.54
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:75138493 original size:93 final size:92
Alignment explanation
Indices: 75138266--75138529 Score: 456
Period size: 93 Copynumber: 2.9 Consensus size: 92
75138256 GCCGATAAGT
* * * *
75138266 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAATTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75138331 CGAGCTCGGATGCCTAGTACATCTCTC
66 CGAGCTCGGATGCCTAGTACATCTCTC
**
75138358 GAACTCGGACTCAACTCAACGAGTTCAAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75138423 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAG-TACATCTCTC
75138451 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
75138516 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
75138530 CAAATATCCT
Statistics
Matches: 162, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 76 0.47
93 86 0.53
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTACATCTCTC
Found at i:75138525 original size:46 final size:46
Alignment explanation
Indices: 75138260--75138525 Score: 265
Period size: 46 Copynumber: 5.8 Consensus size: 46
75138250 TAACCCGCCG
* *
75138260 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCC
* * *
75138306 ATAAGTGAACTCGGACTCAATTCAACGAGCTCGG--ATGC-CTAGTAC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A-TCC
*** * **
75138351 ATCTCTCGAACTCGGACTCAACTCAACGAGTTCAAACATTCGCATCC
1 ATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCC
* *
75138398 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTTAC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--TCC
*** *
75138444 ATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCC
1 ATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCC
*
75138491 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
75138526 TGCCCAAATA
Statistics
Matches: 177, Mismatches: 30, Indels: 26
0.76 0.13 0.11
Matches are distributed among these distances:
43 2 0.01
44 7 0.04
45 5 0.03
46 116 0.66
47 37 0.21
48 4 0.02
49 5 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCC
Found at i:75139974 original size:212 final size:210
Alignment explanation
Indices: 75139623--75140009 Score: 553
Period size: 212 Copynumber: 1.8 Consensus size: 210
75139613 CTAGAATGCA
* * * * ** *
75139623 AGTTTTACAAATTATTCGATTTAGTCGCTAATTTCAATTTAAGCACTTTATGCATAAAATTTCTT
1 AGTTTTACAAATTATTCGATTTAGTCCCTAATCTCAACTGAAGCACTCAATGCATAAAATTTCAT
* *
75139688 CACGAAATTTTCACACAATCATGCAATCATATCATAGACCTCAAAATAATCATAAAATAATTATT
66 CACGAAATTTTCACACAATCATGAAATCATATCATAAACCTCAAAATAATCATAAAATAATTATT
*
75139753 TCTATCTCGGATTTTGTGGTCACAAAATCGCTATTCCGACTAGGCCCAAAATCAGAATATTACAA
131 TCTATCTCGGA-TTTGTGGTCACAAAA-CCCTATTCCGACTAGGCCCAAAATCAGAATATTACAA
75139818 AAAACTTCTAAAACACG
194 AAAACTTCTAAAACACG
* * * *
75139835 AGTTTTACAATTTATTCGGTTTAGTCCCTAATCTCAACTGAAGCGCTCAATGCATAGAATTTCAT
1 AGTTTTACAAATTATTCGATTTAGTCCCTAATCTCAACTGAAGCACTCAATGCATAAAATTTCAT
* *
75139900 CATGAAATTTTCACGA-AATCATGAAATCATATCATAAACC-CTAAAATAATTATAAAATAATTA
66 CACGAAATTTTCAC-ACAATCATGAAATCATATCATAAACCTC-AAAATAATCATAAAATAATTA
* * *
75139963 TTTCTATCTCGGATTTGTGGTCACGAAACCCTATTCTGATTAGGCCC
129 TTTCTATCTCGGATTTGTGGTCACAAAACCCTATTCCGACTAGGCCC
75140010 TAATTCGGGT
Statistics
Matches: 154, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
210 16 0.10
211 15 0.10
212 122 0.79
213 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (210 bp):
AGTTTTACAAATTATTCGATTTAGTCCCTAATCTCAACTGAAGCACTCAATGCATAAAATTTCAT
CACGAAATTTTCACACAATCATGAAATCATATCATAAACCTCAAAATAATCATAAAATAATTATT
TCTATCTCGGATTTGTGGTCACAAAACCCTATTCCGACTAGGCCCAAAATCAGAATATTACAAAA
AACTTCTAAAACACG
Found at i:75141653 original size:28 final size:28
Alignment explanation
Indices: 75141587--75141684 Score: 92
Period size: 28 Copynumber: 3.5 Consensus size: 28
75141577 ATTTTGAAAA
* *
75141587 ATGGCACTTAGTGTG-CGAAACATCCAGAA
1 ATGGCACTTAGTG-GACGAGACATCCAG-G
* * * *
75141616 ATGGCTCTTAGTGGATGA-ATTATCGAGG
1 ATGGCACTTAGTGGACGAGA-CATCCAGG
*
75141644 ATGGCACTTAGTGTACGAGACATCCAGG
1 ATGGCACTTAGTGGACGAGACATCCAGG
75141672 ATGGCACTTAGTG
1 ATGGCACTTAGTG
75141685 CGTGATACAT
Statistics
Matches: 56, Mismatches: 10, Indels: 7
0.77 0.14 0.10
Matches are distributed among these distances:
28 36 0.64
29 20 0.36
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.26
Consensus pattern (28 bp):
ATGGCACTTAGTGGACGAGACATCCAGG
Found at i:75159498 original size:28 final size:29
Alignment explanation
Indices: 75159444--75159503 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 29
75159434 AAGCATGTAC
*
75159444 ATGAATGTGATTTGGGCCTAATAGGCCAT
1 ATGAATGAGATTTGGGCCTAATAGGCCAT
* *
75159473 ATGAATGAGA-TTGGGCCTAGTGGGCCAT
1 ATGAATGAGATTTGGGCCTAATAGGCCAT
75159501 ATG
1 ATG
75159504 CATGTATGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 19 0.68
29 9 0.32
ACGTcount: A:0.27, C:0.13, G:0.32, T:0.28
Consensus pattern (29 bp):
ATGAATGAGATTTGGGCCTAATAGGCCAT
Found at i:75171110 original size:47 final size:47
Alignment explanation
Indices: 75171010--75171196 Score: 284
Period size: 47 Copynumber: 3.9 Consensus size: 47
75171000 TAGTATGGCG
75171010 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
75171059 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
75171106 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
75171153 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
75171197 TCCCGAAGGG
Statistics
Matches: 128, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
47 99 0.77
49 29 0.23
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:75172637 original size:40 final size:40
Alignment explanation
Indices: 75172579--75172959 Score: 554
Period size: 40 Copynumber: 9.6 Consensus size: 40
75172569 GAGTGAAATG
*
75172579 TCCGGGCTAA-ATCTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTC-CGAAGAGCATTCGTGCTAGTGATGTA
*
75172619 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
*
75172659 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
*
75172699 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
* *
75172739 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
*
75172779 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
75172819 TCCGGGCTAAG-TCTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTC-CGAAGAGCATTCGTGCTAGTGATGTA
* *
75172859 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
* * *** * *
75172899 TTCGTGCTAAACCCCGAAGAGCATTTGTGCTGGTG-T-TA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
* *
75172937 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTTCCGAAGAGCA
75172960 ATCATGCTGG
Statistics
Matches: 316, Mismatches: 22, Indels: 8
0.91 0.06 0.02
Matches are distributed among these distances:
38 20 0.06
39 2 0.01
40 290 0.92
41 4 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:75176697 original size:49 final size:49
Alignment explanation
Indices: 75176635--75176823 Score: 278
Period size: 49 Copynumber: 3.9 Consensus size: 49
75176625 TAGTATGGCG
75176635 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
75176684 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
75176733 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* * * * *
75176780 GAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
75176824 TCCCGAAGGG
Statistics
Matches: 127, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
47 48 0.38
48 1 0.01
49 78 0.61
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
Found at i:75179060 original size:56 final size:57
Alignment explanation
Indices: 75178996--75179106 Score: 154
Period size: 57 Copynumber: 2.0 Consensus size: 57
75178986 TACCTGTATA
* * * *
75178996 TGGCCCATTAGGCCC-AATCTCTTTCATATGACCTATTAGGCC-CAATCACATTTATG
1 TGGCCCATTAGGCCCAAACCACATTCATATGACC-ATTAGGCCTAAATCACATTTATG
*
75179052 TGGCCCATTAGGCCCAAACCACATTCATATGGCCATTAGGCCTAAATCACATTTA
1 TGGCCCATTAGGCCCAAACCACATTCATATGACCATTAGGCCTAAATCACATTTA
75179107 CAATCATGCT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
56 23 0.48
57 25 0.52
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.29
Consensus pattern (57 bp):
TGGCCCATTAGGCCCAAACCACATTCATATGACCATTAGGCCTAAATCACATTTATG
Found at i:75179102 original size:28 final size:28
Alignment explanation
Indices: 75178993--75179104 Score: 118
Period size: 28 Copynumber: 4.0 Consensus size: 28
75178983 ACATACCTGT
* * *
75178993 ATATGGCCCATTAGGCCCAATCTCTTTC
1 ATATGGCCCATTAGGCCAAATCACATTC
* * * *
75179021 ATATGACCTATTAGGCCCAATCACATTT
1 ATATGGCCCATTAGGCCAAATCACATTC
* *
75179049 ATGTGGCCCATTAGGCCCAAACCACATTC
1 ATATGGCCCATTAGG-CCAAATCACATTC
75179078 ATATGG-CCATTAGGCCTAAATCACATT
1 ATATGGCCCATTAGGCC-AAATCACATT
75179105 TACAATCATG
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
27 2 0.03
28 52 0.75
29 15 0.22
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (28 bp):
ATATGGCCCATTAGGCCAAATCACATTC
Found at i:75179190 original size:17 final size:18
Alignment explanation
Indices: 75179168--75179201 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75179158 TGCCTATTAT
75179168 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
75179185 GGGCCCATTTAGCCCAT
1 GGGCCCATATAGCCCAT
75179202 TCCCGCCCGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.38, G:0.24, T:0.18
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:75186469 original size:20 final size:21
Alignment explanation
Indices: 75186436--75186474 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
75186426 GCACTTCGGT
75186436 AATTGGGCCTCAATAGGCTAA
1 AATTGGGCCTCAATAGGCTAA
*
75186457 AATTGGG-CTCAATGGGCT
1 AATTGGGCCTCAATAGGCT
75186475 TGCGGGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (21 bp):
AATTGGGCCTCAATAGGCTAA
Found at i:75187105 original size:20 final size:20
Alignment explanation
Indices: 75187082--75187149 Score: 77
Period size: 20 Copynumber: 3.4 Consensus size: 20
75187072 CCATAAAAAT
75187082 TTCATTCATATTTGAAAACG
1 TTCATTCATATTTGAAAACG
* **
75187102 TTCATTCACT-TCAT-AAAAAT
1 TTCATTCA-TAT-TTGAAAACG
75187122 TTCATTCATATTTGAAAACG
1 TTCATTCATATTTGAAAACG
75187142 TTCATTCA
1 TTCATTCA
75187150 CTTACACATA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
19 2 0.05
20 34 0.89
21 2 0.05
ACGTcount: A:0.35, C:0.18, G:0.06, T:0.41
Consensus pattern (20 bp):
TTCATTCATATTTGAAAACG
Found at i:75187128 original size:40 final size:40
Alignment explanation
Indices: 75187073--75187152 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
75187063 AAATACGGGC
75187073 CATAAAAATTTCATTCATATTTGAAAACGTTCATTCACTT
1 CATAAAAATTTCATTCATATTTGAAAACGTTCATTCACTT
75187113 CATAAAAATTTCATTCATATTTGAAAACGTTCATTCACTT
1 CATAAAAATTTCATTCATATTTGAAAACGTTCATTCACTT
75187153 ACACATAGTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.38, C:0.17, G:0.05, T:0.40
Consensus pattern (40 bp):
CATAAAAATTTCATTCATATTTGAAAACGTTCATTCACTT
Found at i:75192086 original size:13 final size:13
Alignment explanation
Indices: 75192068--75192092 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75192058 GATGTTATTG
75192068 TTATTATTATTTA
1 TTATTATTATTTA
75192081 TTATTATTATTT
1 TTATTATTATTT
75192093 CATAGGTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTATTATTATTTA
Found at i:75197412 original size:17 final size:18
Alignment explanation
Indices: 75197385--75197418 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
75197375 ATGCCAAAAT
75197385 GTTGAACTCCATATTCCA
1 GTTGAACTCCATATTCCA
75197403 GTTG-ACTCCATATTCC
1 GTTGAACTCCATATTCC
75197419 CCCACAAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.24, C:0.29, G:0.12, T:0.35
Consensus pattern (18 bp):
GTTGAACTCCATATTCCA
Found at i:75201645 original size:18 final size:18
Alignment explanation
Indices: 75201622--75201665 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
75201612 AGGGATTTTG
* *
75201622 GGGGAAATTTAG-GGATT
1 GGGGAAATGTAGAGAATT
75201639 AGGGGAAATGTAGAGAATT
1 -GGGGAAATGTAGAGAATT
75201658 GGGGAAAT
1 GGGGAAAT
75201666 CAATTTTGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.36, C:0.00, G:0.41, T:0.23
Consensus pattern (18 bp):
GGGGAAATGTAGAGAATT
Found at i:75201901 original size:77 final size:76
Alignment explanation
Indices: 75201795--75201945 Score: 250
Period size: 77 Copynumber: 2.0 Consensus size: 76
75201785 TGTCGTTTTC
*
75201795 ATAGTGTTTTTTTGGTGTTTTTTAAAAAAACGCCACTAATCTCTTAATTTTTATATTTATTTTTA
1 ATAGTGTTTTTTTGGTGTTTTTTAAAAAAACGCCACTAATCTCTTAATTTTCATATTTATTTTTA
75201860 TTTGTTATATA
66 TTTGTTATATA
**
75201871 ATAGTGTTTTTTT-GTGGTATTTTTTTAAAAACGCCACTAATCTCTTAATTTTCATATTTATTTT
1 ATAGTGTTTTTTTGGT-GT-TTTTTAAAAAAACGCCACTAATCTCTTAATTTTCATATTTATTTT
75201935 TATTTGTTATA
64 TATTTGTTATA
75201946 ATTTGGAAGC
Statistics
Matches: 70, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
75 2 0.03
76 15 0.21
77 53 0.76
ACGTcount: A:0.26, C:0.09, G:0.09, T:0.56
Consensus pattern (76 bp):
ATAGTGTTTTTTTGGTGTTTTTTAAAAAAACGCCACTAATCTCTTAATTTTCATATTTATTTTTA
TTTGTTATATA
Found at i:75202140 original size:7 final size:7
Alignment explanation
Indices: 75202128--75202245 Score: 62
Period size: 7 Copynumber: 16.6 Consensus size: 7
75202118 ACTAATTAAT
75202128 CTAAACC
1 CTAAACC
75202135 CTAAACC
1 CTAAACC
75202142 TCT-AACC
1 -CTAAACC
* * *
75202149 TTTATCC
1 CTAAACC
*
75202156 CTAAATC
1 CTAAACC
*
75202163 CTAAATC
1 CTAAACC
75202170 CTAAACC
1 CTAAACC
75202177 C-ATAACC
1 CTA-AACC
*
75202184 C-ATATCC
1 CTA-AACC
*
75202191 CTTAACC
1 CTAAACC
*
75202198 CTTAAAAC
1 C-TAAACC
75202206 CTAAACC
1 CTAAACC
*
75202213 CTTAACAC
1 CTAAAC-C
* *
75202221 ATAACCC
1 CTAAACC
75202228 CTAAACC
1 CTAAACC
*
75202235 TTAAACC
1 CTAAACC
75202242 CTAA
1 CTAA
75202246 CACATAATCC
Statistics
Matches: 84, Mismatches: 21, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
6 2 0.02
7 71 0.85
8 11 0.13
ACGTcount: A:0.39, C:0.37, G:0.00, T:0.24
Consensus pattern (7 bp):
CTAAACC
Found at i:75202174 original size:35 final size:35
Alignment explanation
Indices: 75202128--75202258 Score: 104
Period size: 35 Copynumber: 3.7 Consensus size: 35
75202118 ACTAATTAAT
* ** *
75202128 CTAAACCCTAAACCTC-TAACCTTTATCCCTAAATC
1 CTAAAACCTAAACC-CATAACCCATATCCCTAAACC
* *
75202163 CTAAATCCTAAACCCATAACCCATATCCCTTAACC
1 CTAAAACCTAAACCCATAACCCATATCCCTAAACC
* * *
75202198 CTTAAAACCTAAACCCTTAACACATAACCCCTAAACC
1 C-TAAAACCTAAACCCATAACCCAT-ATCCCTAAACC
* * * *
75202235 TTAAACCCT-AACACATAATCCATA
1 CTAAAACCTAAACCCATAACCCATA
75202259 AACCATAATC
Statistics
Matches: 77, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
34 2 0.03
35 39 0.51
36 27 0.35
37 9 0.12
ACGTcount: A:0.40, C:0.37, G:0.00, T:0.24
Consensus pattern (35 bp):
CTAAAACCTAAACCCATAACCCATATCCCTAAACC
Found at i:75202214 original size:15 final size:15
Alignment explanation
Indices: 75202194--75202243 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
75202184 CATATCCCTT
75202194 AACCCTTAAAACCTA
1 AACCCTTAAAACCTA
* *
75202209 AACCCTTAACACAT-
1 AACCCTTAAAACCTA
*
75202223 AACCCCT-AAACCTTA
1 AACCCTTAAAACC-TA
75202238 AACCCT
1 AACCCT
75202244 AACACATAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
13 3 0.11
14 7 0.26
15 17 0.63
ACGTcount: A:0.42, C:0.38, G:0.00, T:0.20
Consensus pattern (15 bp):
AACCCTTAAAACCTA
Found at i:75202237 original size:36 final size:36
Alignment explanation
Indices: 75202154--75202245 Score: 105
Period size: 36 Copynumber: 2.6 Consensus size: 36
75202144 TAACCTTTAT
* * *
75202154 CCCTAAATCC-TAAATCCTAAACCCATAACCCATATC
1 CCCTAAA-CCTTAAAACCTAAACCCATAACACATAAC
* * *
75202190 CCTTAACCCTTAAAACCTAAACCCTTAACACATAAC
1 CCCTAAACCTTAAAACCTAAACCCATAACACATAAC
*
75202226 CCCTAAACCTTAAACCCTAA
1 CCCTAAACCTTAAAACCTAA
75202246 CACATAATCC
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
35 2 0.04
36 44 0.96
ACGTcount: A:0.40, C:0.38, G:0.00, T:0.22
Consensus pattern (36 bp):
CCCTAAACCTTAAAACCTAAACCCATAACACATAAC
Found at i:75202237 original size:43 final size:44
Alignment explanation
Indices: 75202157--75202281 Score: 121
Period size: 43 Copynumber: 2.9 Consensus size: 44
75202147 CCTTTATCCC
* * * **
75202157 TAAATCCTAAATCCTAAACCCATAACCCATATCCCTT-AACCCT
1 TAAAACCTAAACCCTAAACACATAACCCATAAACCTTAAACCCT
* *
75202200 TAAAACCTAAACCCTTAACACATAACCCCTAAACCTTAAACCC-
1 TAAAACCTAAACCCTAAACACATAACCCATAAACCTTAAACCCT
* * * * *
75202243 TAACACATAATCCATAAAC-CATAATCCATAAACCTTAAA
1 TAAAACCTAAACCCTAAACACATAACCCATAAACCTTAAA
75202282 ATATTAACTC
Statistics
Matches: 67, Mismatches: 14, Indels: 3
0.80 0.17 0.04
Matches are distributed among these distances:
42 18 0.27
43 44 0.66
44 5 0.07
ACGTcount: A:0.44, C:0.34, G:0.00, T:0.22
Consensus pattern (44 bp):
TAAAACCTAAACCCTAAACACATAACCCATAAACCTTAAACCCT
Found at i:75202243 original size:14 final size:14
Alignment explanation
Indices: 75202128--75202281 Score: 50
Period size: 14 Copynumber: 10.9 Consensus size: 14
75202118 ACTAATTAAT
*
75202128 CTAAACCCTAAACC
1 CTAAACCTTAAACC
* *
75202142 TCT-AACCTTTATCC
1 -CTAAACCTTAAACC
*
75202156 CTAAATCC-TAAATC
1 CTAAA-CCTTAAACC
*
75202170 CTAAACC-CATAACC
1 CTAAACCTTA-AACC
**
75202184 CATATCCCTT-AACC
1 C-TAAACCTTAAACC
75202198 CTTAAAACC-TAAACC
1 C-T-AAACCTTAAACC
* * *
75202213 CTTAACACATAACCC
1 CTAAAC-CTTAAACC
75202228 CTAAACCTTAAACC
1 CTAAACCTTAAACC
* *
75202242 CT-AACACATAATCC
1 CTAAAC-CTTAAACC
* * *
75202256 ATAAACCATAATCC
1 CTAAACCTTAAACC
*
75202270 ATAAACCTTAAA
1 CTAAACCTTAAA
75202282 ATATTAACTC
Statistics
Matches: 104, Mismatches: 24, Indels: 23
0.69 0.16 0.15
Matches are distributed among these distances:
13 11 0.11
14 64 0.62
15 29 0.28
ACGTcount: A:0.42, C:0.35, G:0.00, T:0.23
Consensus pattern (14 bp):
CTAAACCTTAAACC
Done.