Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 228 of 333
Found at i:75202246 original size:21 final size:21
Alignment explanation
Indices: 75202171--75202313 Score: 67
Period size: 21 Copynumber: 6.6 Consensus size: 21
75202161 TCCTAAATCC
**
75202171 TAAACCCATAACCCATATCCCT
1 TAAACCC-TAACCCATAAACCT
*
75202193 T-AACCCTTAAAACC-TAAACCCT
1 TAAACCC-T-AACCCATAAA-CCT
* *
75202215 T-AACACATAACCCCTAAACCT
1 TAAAC-CCTAACCCATAAACCT
* * *
75202236 TAAACCCTAACACATAATCCA
1 TAAACCCTAACCCATAAACCT
* *
75202257 TAAACCATAATCCATAAACCT
1 TAAACCCTAACCCATAAACCT
*** * *
75202278 TAAAATATTAACTCATAAACCA
1 T-AAACCCTAACCCATAAACCT
75202300 TAAACCCCTAACCC
1 TAAA-CCCTAACCC
75202314 CTATCCCCTT
Statistics
Matches: 88, Mismatches: 26, Indels: 14
0.69 0.20 0.11
Matches are distributed among these distances:
21 47 0.53
22 40 0.45
23 1 0.01
ACGTcount: A:0.44, C:0.34, G:0.00, T:0.22
Consensus pattern (21 bp):
TAAACCCTAACCCATAAACCT
Found at i:75202246 original size:28 final size:28
Alignment explanation
Indices: 75202193--75202262 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
75202183 CCATATCCCT
*
75202193 TAACCCTTAAAACCTAAACCCTTAACACA
1 TAACCCAT-AAACCTAAACCCTTAACACA
*
75202222 TAACCCCTAAACCTTAAACCC-TAACACA
1 TAACCCATAAACC-TAAACCCTTAACACA
*
75202250 TAATCCATAAACC
1 TAACCCATAAACC
75202263 ATAATCCATA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 23 0.62
29 14 0.38
ACGTcount: A:0.44, C:0.36, G:0.00, T:0.20
Consensus pattern (28 bp):
TAACCCATAAACCTAAACCCTTAACACA
Found at i:75202281 original size:7 final size:7
Alignment explanation
Indices: 75202202--75202305 Score: 59
Period size: 7 Copynumber: 14.7 Consensus size: 7
75202192 TTAACCCTTA
75202202 AAACC-T
1 AAACCAT
*
75202208 AAACCCT
1 AAACCAT
*
75202215 TAACACAT
1 AAAC-CAT
* *
75202223 AACCCCT
1 AAACCAT
*
75202230 AAACCTT
1 AAACCAT
*
75202237 AAACCCT
1 AAACCAT
75202244 -AACACAT
1 AAAC-CAT
*
75202251 AATCCAT
1 AAACCAT
75202258 AAACCAT
1 AAACCAT
*
75202265 AATCCAT
1 AAACCAT
*
75202272 AAACCTT
1 AAACCAT
**
75202279 AAAATAT
1 AAACCAT
*
75202286 TAACTCAT
1 AAAC-CAT
75202294 AAACCAT
1 AAACCAT
75202301 AAACC
1 AAACC
75202306 CCTAACCCCT
Statistics
Matches: 72, Mismatches: 21, Indels: 9
0.71 0.21 0.09
Matches are distributed among these distances:
6 8 0.11
7 53 0.74
8 11 0.15
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.21
Consensus pattern (7 bp):
AAACCAT
Found at i:75202312 original size:7 final size:7
Alignment explanation
Indices: 75202302--75202360 Score: 55
Period size: 7 Copynumber: 8.1 Consensus size: 7
75202292 ATAAACCATA
75202302 AACCCCT
1 AACCCCT
75202309 AACCCCT
1 AACCCCT
*
75202316 ATCCCCTT
1 AACCCC-T
*
75202324 AACACCT
1 AACCCCT
*
75202331 AACCCTT
1 AACCCCT
*
75202338 ATCCCCTT
1 AACCCC-T
*
75202346 AACGCCT
1 AACCCCT
75202353 AACCCCT
1 AACCCCT
75202360 A
1 A
75202361 TCCTCTTAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
7 30 0.75
8 10 0.25
ACGTcount: A:0.27, C:0.49, G:0.02, T:0.22
Consensus pattern (7 bp):
AACCCCT
Found at i:75202331 original size:22 final size:22
Alignment explanation
Indices: 75202306--75202369 Score: 101
Period size: 22 Copynumber: 2.9 Consensus size: 22
75202296 ACCATAAACC
75202306 CCTAACCCCTATCCCCTTAACA
1 CCTAACCCCTATCCCCTTAACA
* *
75202328 CCTAACCCTTATCCCCTTAACG
1 CCTAACCCCTATCCCCTTAACA
*
75202350 CCTAACCCCTATCCTCTTAA
1 CCTAACCCCTATCCCCTTAA
75202370 AACTTGTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.25, C:0.47, G:0.02, T:0.27
Consensus pattern (22 bp):
CCTAACCCCTATCCCCTTAACA
Found at i:75202553 original size:114 final size:115
Alignment explanation
Indices: 75202352--75202593 Score: 477
Period size: 114 Copynumber: 2.1 Consensus size: 115
75202342 CCTTAACGCC
75202352 TAACCCCTATCCTCTTAAAACTTGTTTTGGTGTAATGTATCTCTTTTACAATTATATAAGAAATC
1 TAACCCCTATCCTCTTAAAACTTGTTTTGGTGTAATGTATCTCTTTTACAATTATATAAGAAATC
75202417 ATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCCTAAACCTCT
66 ATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCCTAAACCTCT
75202467 TAACCCCTATCCTCTTAAAACTTG-TTTGGTGTAATGTATCTCTTTTACAATTATATAAGAAATC
1 TAACCCCTATCCTCTTAAAACTTGTTTTGGTGTAATGTATCTCTTTTACAATTATATAAGAAATC
75202531 ATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCCTAAACCTCT
66 ATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCCTAAACCTCT
75202581 TAACCCCTATCCT
1 TAACCCCTATCCT
75202594 ATAAATATTA
Statistics
Matches: 127, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
114 103 0.81
115 24 0.19
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (115 bp):
TAACCCCTATCCTCTTAAAACTTGTTTTGGTGTAATGTATCTCTTTTACAATTATATAAGAAATC
ATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCCTAAACCTCT
Found at i:75202738 original size:7 final size:7
Alignment explanation
Indices: 75202726--75202823 Score: 70
Period size: 7 Copynumber: 13.4 Consensus size: 7
75202716 AGTTAACTCC
*
75202726 TAAACCT
1 TAAACCA
*
75202733 TAAACCC
1 TAAACCA
75202740 TAAACCA
1 TAAACCA
* * *
75202747 TATATCT
1 TAAACCA
75202754 TAAACCA
1 TAAACCA
75202761 TAGTTAACTCA
1 TA---AAC-CA
*
75202772 TAAACCT
1 TAAACCA
75202779 TAAACCA
1 TAAACCA
75202786 TAAACCA
1 TAAACCA
* * *
75202793 TATATCT
1 TAAACCA
75202800 TAAACCA
1 TAAACCA
75202807 TAAACCA
1 TAAACCA
*
75202814 TAAACTA
1 TAAACCA
75202821 TAA
1 TAA
75202824 TGATAATTAA
Statistics
Matches: 70, Mismatches: 17, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
7 60 0.86
8 3 0.04
10 3 0.04
11 4 0.06
ACGTcount: A:0.48, C:0.24, G:0.01, T:0.27
Consensus pattern (7 bp):
TAAACCA
Found at i:75202757 original size:21 final size:21
Alignment explanation
Indices: 75202731--75202815 Score: 107
Period size: 21 Copynumber: 3.9 Consensus size: 21
75202721 ACTCCTAAAC
*
75202731 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
* *
75202752 CTTAAACCATAGTTAACTCATAAAC
1 CTTAAACCATA---AAC-CATATAT
75202777 CTTAAACCATAAACCATATAT
1 CTTAAACCATAAACCATATAT
75202798 CTTAAACCATAAACCATA
1 CTTAAACCATAAACCATA
75202816 AACTATAATG
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
21 33 0.60
22 3 0.05
24 3 0.05
25 16 0.29
ACGTcount: A:0.46, C:0.26, G:0.01, T:0.27
Consensus pattern (21 bp):
CTTAAACCATAAACCATATAT
Found at i:75202768 original size:46 final size:46
Alignment explanation
Indices: 75202715--75202808 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
75202705 CTTCAAATAC
* *
75202715 TAGTTAACTCCTAAACCTTAAACCCTAAACCATATATCTTAAACCA
1 TAGTTAACTCATAAACCTTAAACCATAAACCATATATCTTAAACCA
75202761 TAGTTAACTCATAAACCTTAAACCATAAACCATATATCTTAAACCA
1 TAGTTAACTCATAAACCTTAAACCATAAACCATATATCTTAAACCA
75202807 TA
1 TA
75202809 AACCATAAAC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.44, C:0.26, G:0.02, T:0.29
Consensus pattern (46 bp):
TAGTTAACTCATAAACCTTAAACCATAAACCATATATCTTAAACCA
Found at i:75202780 original size:25 final size:25
Alignment explanation
Indices: 75202652--75202788 Score: 90
Period size: 25 Copynumber: 5.6 Consensus size: 25
75202642 TTCTAACCCT
*
75202652 AACCATTAAACCCTAATTAA-TCATA
1 AACC-TTAAACCATAATTAACTCATA
* * *
75202677 ATCCCTAAACCCATAATTCA-TCATA
1 AACCTTAAA-CCATAATTAACTCATA
* * *
75202702 AACCTTCAAA-TACTAGTTAACTCCTA
1 AACCTT-AAACCA-TAATTAACTCATA
*
75202728 AACCTTAAACCCT-A--AAC-CATA
1 AACCTTAAACCATAATTAACTCATA
* * *
75202749 TATCTTAAACCATAGTTAACTCATA
1 AACCTTAAACCATAATTAACTCATA
75202774 AACCTTAAACCATAA
1 AACCTTAAACCATAA
75202789 ACCATATATC
Statistics
Matches: 82, Mismatches: 21, Indels: 18
0.68 0.17 0.15
Matches are distributed among these distances:
21 13 0.16
22 3 0.04
24 8 0.10
25 45 0.55
26 13 0.16
ACGTcount: A:0.44, C:0.27, G:0.01, T:0.28
Consensus pattern (25 bp):
AACCTTAAACCATAATTAACTCATA
Found at i:75203075 original size:40 final size:41
Alignment explanation
Indices: 75202980--75203075 Score: 149
Period size: 41 Copynumber: 2.4 Consensus size: 41
75202970 GTTATATGAC
* *
75202980 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGAT
*
75203021 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCT-TTAT
1 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGAT
*
75203061 TTTTCGCGGCGTTTT
1 TTTTAGCGGCGTTTT
75203076 TTTACTAAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
40 16 0.31
41 35 0.69
ACGTcount: A:0.16, C:0.23, G:0.24, T:0.38
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGAT
Found at i:75203147 original size:12 final size:12
Alignment explanation
Indices: 75203132--75203157 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
75203122 GTTTTTTGAT
75203132 AAAACGCCGCTA
1 AAAACGCCGCTA
75203144 AAAACGCCGCTA
1 AAAACGCCGCTA
75203156 AA
1 AA
75203158 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:75203495 original size:40 final size:40
Alignment explanation
Indices: 75203433--75203608 Score: 207
Period size: 40 Copynumber: 4.4 Consensus size: 40
75203423 AAACCAAGTA
* * * *
75203433 CCTTCGGGATTTA-ACCGAATATAGCT-ACTCACTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCACACAAATG
* ** *
75203472 CCTTCAGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
*
75203512 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
*
75203552 CCTTCGGGACTTAGCCCGGA-ATTAGTCACT-AGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CACAAATG
75203592 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
75203609 CGTTATCATC
Statistics
Matches: 120, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
39 13 0.11
40 107 0.89
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:75205752 original size:56 final size:56
Alignment explanation
Indices: 75205681--75205856 Score: 280
Period size: 56 Copynumber: 3.1 Consensus size: 56
75205671 ATATATGTGT
* * * *
75205681 GTAAGACCATGTTTAATACGTTGGCATTGATATGTGATTTTGATATATGTGTACGA
1 GTAAGACCACGTTTAATACATTGGCATTGATATGTGATTCTGATATATGTGTGCGA
*
75205737 GTAAGACCACGTTTAATACATTGGCATCGATATGTGATTCTGATATATGTGTGCGA
1 GTAAGACCACGTTTAATACATTGGCATTGATATGTGATTCTGATATATGTGTGCGA
* * *
75205793 GTAAGACCACGTTTAATACATTGACATTGATATGTGATTCTGATTTATGTGTGTGA
1 GTAAGACCACGTTTAATACATTGGCATTGATATGTGATTCTGATATATGTGTGCGA
75205849 GTAAGACC
1 GTAAGACC
75205857 CTGTCTGGGC
Statistics
Matches: 111, Mismatches: 9, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
56 111 1.00
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.36
Consensus pattern (56 bp):
GTAAGACCACGTTTAATACATTGGCATTGATATGTGATTCTGATATATGTGTGCGA
Found at i:75205878 original size:112 final size:112
Alignment explanation
Indices: 75205681--75205884 Score: 275
Period size: 112 Copynumber: 1.8 Consensus size: 112
75205671 ATATATGTGT
* * * *
75205681 GTAAGACCATGTTTAATACGTTGGCATTGATATGTGATTTTGATATATGTGTACGAGTAAGACCA
1 GTAAGACCACGTTTAATACATTGACATTGATATGTGATTCTGATATATGTGTACGAGTAAGACCA
* * *
75205746 CGTTTAATACATTGGCATCGATATGTGATTCTGATATATGTGTGCGA
66 CGTCTAAGACAGTGGCATCGATATGTGATTCTGATATATGTGTGCGA
* **
75205793 GTAAGACCACGTTTAATACATTGACATTGATATGTGATTCTGATTTATGTGTGTGAGTAAGACC-
1 GTAAGACCACGTTTAATACATTGACATTGATATGTGATTCTGATATATGTGTACGAGTAAGACCA
** *
75205857 CTGTCTGGGCCAGTGGCATCGATATGTG
66 C-GTCTAAGACAGTGGCATCGATATGTG
75205885 GTTACATGTA
Statistics
Matches: 78, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
111 1 0.01
112 77 0.99
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (112 bp):
GTAAGACCACGTTTAATACATTGACATTGATATGTGATTCTGATATATGTGTACGAGTAAGACCA
CGTCTAAGACAGTGGCATCGATATGTGATTCTGATATATGTGTGCGA
Found at i:75205881 original size:56 final size:56
Alignment explanation
Indices: 75205702--75205884 Score: 206
Period size: 56 Copynumber: 3.3 Consensus size: 56
75205692 TTTAATACGT
* * * * * *
75205702 TGGCATTGATATGTGATTTTGATATATGTGTACGAGTAAGACCACGTTTAATACAT
1 TGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCACGTCTAAGACAG
* * *
75205758 TGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCACGTTTAATACAT
1 TGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCACGTCTAAGACAG
* * * * ** *
75205814 TGACATTGATATGTGATTCTGATTTATGTGTGTGAGTAAGACC-CTGTCTGGGCCAG
1 TGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCAC-GTCTAAGACAG
75205870 TGGCATCGATATGTG
1 TGGCATCGATATGTG
75205885 GTTACATGTA
Statistics
Matches: 111, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
55 1 0.01
56 110 0.99
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.36
Consensus pattern (56 bp):
TGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCACGTCTAAGACAG
Found at i:75207545 original size:52 final size:47
Alignment explanation
Indices: 75207441--75207553 Score: 113
Period size: 46 Copynumber: 2.3 Consensus size: 47
75207431 TAAATTACAT
* * *
75207441 AATATACATTAACATTTCATGCAGATATAATCATAATAACATAAATAC
1 AATATACATT-ACATTTCATGCAGAAATAAACATAAAAACATAAATAC
75207489 -ATATACATTACATTTCATGCA-AAATACAACATAGAAAACAATGAATATAAC
1 AATATACATTACATTTCATGCAGAAATA-AACATA-AAAAC-AT-AA-AT-AC
*
75207540 AATATAAATTACAT
1 AATATACATTACAT
75207554 AATATATACA
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
45 4 0.07
46 17 0.31
47 13 0.24
48 2 0.04
49 2 0.04
50 2 0.04
51 2 0.04
52 12 0.22
ACGTcount: A:0.52, C:0.14, G:0.04, T:0.29
Consensus pattern (47 bp):
AATATACATTACATTTCATGCAGAAATAAACATAAAAACATAAATAC
Found at i:75208109 original size:20 final size:19
Alignment explanation
Indices: 75208039--75208168 Score: 91
Period size: 18 Copynumber: 7.1 Consensus size: 19
75208029 TAATAAAAAC
75208039 AAAATAATATAATATATAAT
1 AAAAT-ATATAATATATAAT
* *
75208059 AGAATA-A-AACAATATAAT
1 AAAATATATAA-TATATAAT
* *
75208077 -GAATA-AT-ATATATAGT
1 AAAATATATAATATATAAT
75208093 AAAATGATATAATATATAAT
1 AAAAT-ATATAATATATAAT
*
75208113 AAAATATATAA-ATAAAAT
1 AAAATATATAATATATAAT
*
75208131 -ATATA-ATAATATATAAAT
1 AAAATATATAATATAT-AAT
75208149 AAAA-ATA-ATATATATAAT
1 AAAATATATA-ATATATAAT
75208167 AA
1 AA
75208169 TTTTTTACAT
Statistics
Matches: 89, Mismatches: 10, Indels: 24
0.72 0.08 0.20
Matches are distributed among these distances:
16 10 0.11
17 19 0.21
18 25 0.28
19 18 0.20
20 17 0.19
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (19 bp):
AAAATATATAATATATAAT
Found at i:75208114 original size:32 final size:30
Alignment explanation
Indices: 75208047--75208169 Score: 100
Period size: 32 Copynumber: 4.2 Consensus size: 30
75208037 ACAAAATAAT
* * *
75208047 ATAATATATA-ATAGAATAAAACAATATAATGA
1 ATAATATATATATAAAAT-ATATAATAT-AT-A
75208079 ATAATATATATAGTAAAATGATATAATATATA
1 ATAATATATATA-TAAAAT-ATATAATATATA
75208111 ATAA-A-ATATAT-AAATA-A-AATATATA
1 ATAATATATATATAAAATATATAATATATA
*
75208136 ATAATATATAAATAAAA-ATA-ATATATATA
1 ATAATATATATATAAAATATATA-ATATATA
75208165 ATAAT
1 ATAAT
75208170 TTTTTACATA
Statistics
Matches: 79, Mismatches: 5, Indels: 17
0.78 0.05 0.17
Matches are distributed among these distances:
25 12 0.15
26 2 0.03
27 7 0.09
28 9 0.11
29 13 0.16
30 5 0.06
31 1 0.01
32 15 0.19
33 3 0.04
34 12 0.15
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (30 bp):
ATAATATATATATAAAATATATAATATATA
Found at i:75208137 original size:54 final size:55
Alignment explanation
Indices: 75208039--75208169 Score: 144
Period size: 54 Copynumber: 2.4 Consensus size: 55
75208029 TAATAAAAAC
* *
75208039 AAAATAATATAATATATAATAGAATAAAACAATATAATGAATAAT-ATATATAGT
1 AAAATAATATAATATATAATAAAATAAAACAATAAAATGAATAATAATATATAGT
* * *
75208093 AAAATGATATAATATATAATAAAATATATA-AATAAAAT-ATATAATAATATATAAAT
1 AAAATAATATAATATATAATAAAATA-AAACAATAAAATGA-ATAATAATATAT-AGT
75208149 AAAAATAATAT-ATATAATAAT
1 -AAAATAATATAATAT-ATAAT
75208170 TTTTTACATA
Statistics
Matches: 65, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
53 1 0.02
54 36 0.55
55 8 0.12
56 6 0.09
57 14 0.22
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (55 bp):
AAAATAATATAATATATAATAAAATAAAACAATAAAATGAATAATAATATATAGT
Found at i:75208139 original size:25 final size:23
Alignment explanation
Indices: 75208078--75208169 Score: 58
Period size: 20 Copynumber: 4.3 Consensus size: 23
75208068 CAATATAATG
* *
75208078 AATAATATATATAGTAAAAT-GAT
1 AATAATATATA-AATAAAATATAT
75208101 -ATAATATAT-AATAAAATATAT
1 AATAATATATAAATAAAATATAT
*
75208122 AAATAA-A-ATATATAATAATATAT
1 -AATAATATATAAATAA-AATATAT
*
75208145 -A-AATA-A-AAATAATATATAT
1 AATAATATATAAATAAAATATAT
75208164 AATAAT
1 AATAAT
75208170 TTTTTACATA
Statistics
Matches: 56, Mismatches: 5, Indels: 18
0.71 0.06 0.23
Matches are distributed among these distances:
19 6 0.11
20 15 0.27
21 10 0.18
22 14 0.25
23 11 0.20
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (23 bp):
AATAATATATAAATAAAATATAT
Found at i:75208164 original size:29 final size:29
Alignment explanation
Indices: 75208016--75208169 Score: 108
Period size: 29 Copynumber: 5.3 Consensus size: 29
75208006 TTTTTAAAAT
* * *
75208016 TATACATAATAAAT-AATAAAAACAAAATAA
1 TATA-ATAATATATAAATAAAAATAATAT-A
*
75208046 TATAAT-ATATAATAGAAT-AAAACAATATA
1 TATAATAATAT-ATA-AATAAAAATAATATA
* *
75208075 -ATGAATAATATATATAGT-AAAATGATATA
1 TAT-AATAATATATA-AATAAAAATAATATA
* *
75208104 -ATATATAATA-A-AATATATAAATAAAATA
1 TATA-ATAATATATAA-ATAAAAATAATATA
75208132 TATAATAATATATAAATAAAAATAATATA
1 TATAATAATATATAAATAAAAATAATATA
75208161 TATAATAAT
1 TATAATAAT
75208170 TTTTTACATA
Statistics
Matches: 101, Mismatches: 12, Indels: 23
0.74 0.09 0.17
Matches are distributed among these distances:
26 1 0.01
27 2 0.02
28 21 0.21
29 55 0.54
30 19 0.19
31 3 0.03
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.32
Consensus pattern (29 bp):
TATAATAATATATAAATAAAAATAATATA
Found at i:75208194 original size:19 final size:21
Alignment explanation
Indices: 75208156--75208194 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
75208146 AATAAAAATA
*
75208156 ATATATATAATAATTTTTTAC
1 ATATATATAATAATTGTTTAC
75208177 ATATATA-AATAA-TGTTTA
1 ATATATATAATAATTGTTTA
75208195 TAGTAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 5 0.29
21 7 0.41
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (21 bp):
ATATATATAATAATTGTTTAC
Found at i:75208242 original size:25 final size:24
Alignment explanation
Indices: 75208200--75208252 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
75208190 GTTTATAGTA
* *
75208200 AAAATAAATAATATTAAAATATTT
1 AAAATAAATAATATTAAAAAAATT
75208224 AAAATAAATAA-ATTATAAAAAAATT
1 AAAATAAATAATA-T-TAAAAAAATT
75208249 AAAA
1 AAAA
75208253 GGATTAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 1 0.04
24 12 0.48
25 12 0.48
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (24 bp):
AAAATAAATAATATTAAAAAAATT
Found at i:75209437 original size:90 final size:90
Alignment explanation
Indices: 75209300--75210127 Score: 1212
Period size: 90 Copynumber: 9.2 Consensus size: 90
75209290 CTCCTTATCA
* * * **
75209300 AATATAGAGACGCCAAATCTG-CTATCTTCGATCTGCTTCAATGTAAACACACAAATGTTTGATC
1 AATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATC
* *
75209364 TGCTATCTTCGATCTGCTCCCGGTCT
65 TACTATCTTCGATCTGCTCCCCGTCT
* * * *
75209390 AAAACAGAGACGCCAAATCTATCATCTGT-GATCTGCTTCGATGTAAACACATGAATATCAGATC
1 AATACAGAGACGCCAAATCTGTCATCT-TCGATCTGCTTCGATGTAAACACACGAATGTCAGATC
75209454 TACTATCTTCGATCTGCTCCCCGTCT
65 TACTATCTTCGATCTGCTCCCCGTCT
* * * *
75209480 AATATAGAGACGCCAAATCTGTCATCTTCGATTTGCTTCGATGTAAACACATGAATGTTAGATCT
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCT
*
75209545 ACTATCTTCGATCTGCTCCCCGTAT
66 ACTATCTTCGATCTGCTCCCCGTCT
* *
75209570 AATACAGAGACACCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACAAATGTCAGATCT
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCT
*
75209635 ACTATCTTCGATCTGCTCCCCGTAT
66 ACTATCTTCGATCTGCTCCCCGTCT
* * * ** *
75209660 AATACAGAGATGCCAAATCTATCATCTTCGATCTGCTTCGATGTCAACACACGAATACCAAATCT
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCT
* *
75209725 ACTATCTTCGATCTGTTCCCCATCT
66 ACTATCTTCGATCTGCTCCCCGTCT
* *
75209750 AATACAGAGACGCCAAATCTATCATCTTCGATCTGCTTCGATGTAAACACATGAATGTCAGATCT
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCT
*
75209815 ACTATCTTCGGTCTGCTCCCCGTCT
66 ACTATCTTCGATCTGCTCCCCGTCT
* *
75209840 AATACAGAGACGCCAAATCTGTCATCTTTGATCTACTTCGATGTAAACACACGAATGTCAGATCT
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCT
*
75209905 TCTATCTTC-AGTCTGCTCCCCGTCT
66 ACTATCTTCGA-TCTGCTCCCCGTCT
* * *
75209930 AATACAGAGACGCCAAATCTGTCATCTTCTATCTGCTTCGATGTAAACAAACAAATGTCAGATCT
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCT
*
75209995 ACTATCTTCAATCTGCTCCCCGTCT
66 ACTATCTTCGATCTGCTCCCCGTCT
* * *
75210020 AATATAGAGATGCAAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCT
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCT
* *
75210085 ACTATCTTCAATCTGCTCCCCATCT
66 ACTATCTTCGATCTGCTCCCCGTCT
* *
75210110 AATACAGAAACACCAAAT
1 AATACAGAGACGCCAAAT
75210128 TTGCTTCCTC
Statistics
Matches: 665, Mismatches: 68, Indels: 10
0.90 0.09 0.01
Matches are distributed among these distances:
89 1 0.00
90 661 0.99
91 3 0.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (90 bp):
AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCT
ACTATCTTCGATCTGCTCCCCGTCT
Found at i:75210002 original size:45 final size:45
Alignment explanation
Indices: 75209953--75210101 Score: 126
Period size: 45 Copynumber: 3.3 Consensus size: 45
75209943 CAAATCTGTC
*
75209953 ATCTTCTATCTGCTTCGATGTAAACAAACAAATGTCAGATCTACT
1 ATCTTCAATCTGCTTCGATGTAAACAAACAAATGTCAGATCTACT
* * * * * * * *
75209998 ATCTTCAATCTGCTCCCCG-TCT-AATATAGAGATG-CAAAATCT-GT
1 ATCTTCAATCTGCT--TCGATGTAAACAAACAAATGTC-AGATCTACT
* * *
75210042 CATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCTACT
1 -ATCTTCAATCTGCTTCGATGTAAACAAACAAATGTCAGATCTACT
75210088 ATCTTCAATCTGCT
1 ATCTTCAATCTGCT
75210102 CCCCATCTAA
Statistics
Matches: 76, Mismatches: 20, Indels: 16
0.68 0.18 0.14
Matches are distributed among these distances:
43 2 0.03
44 4 0.05
45 64 0.84
46 4 0.05
47 2 0.03
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.33
Consensus pattern (45 bp):
ATCTTCAATCTGCTTCGATGTAAACAAACAAATGTCAGATCTACT
Found at i:75224683 original size:37 final size:38
Alignment explanation
Indices: 75224607--75224766 Score: 207
Period size: 38 Copynumber: 4.2 Consensus size: 38
75224597 GAATCCAGTC
* *
75224607 ACCAGCAC-AAGACCTGCGGGACTTTAAGCTCAGATATAAT
1 ACCAGCACGAAG-CCTGCGGGA-TTTAA-CCCGGATATAAT
* * *
75224647 ACCAGCAC-TAGGCTGCAGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* *
75224684 ATCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
75224722 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
*
75224760 TCCAGCA
1 ACCAGCA
75224767 TATAGCCTGC
Statistics
Matches: 106, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
37 17 0.16
38 72 0.68
39 7 0.07
40 10 0.09
ACGTcount: A:0.32, C:0.26, G:0.22, T:0.21
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:75224749 original size:76 final size:77
Alignment explanation
Indices: 75224609--75224790 Score: 212
Period size: 76 Copynumber: 2.4 Consensus size: 77
75224599 ATCCAGTCAC
* * *
75224609 CAGCACAAGACCTGCGGGACTTTAAGCTCAGATATAATACCAGCACTAGGCTGCAGGATTTAACC
1 CAGCACAAGACCTGCGGGACTTTAAGCCCAGATATAATACCAGCACAAGCCTGCAGGATTTAACC
75224674 CGGATATAATAT
66 CGGATATAATAT
* * *
75224686 CAGCACGAAG-CCTGCGGGA-TTTAA-CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CAGCAC-AAGACCTGCGGGACTTTAAGCCCAGATATAATACCAGCAC-AAGCCTGCAGGATTTAA
75224748 CCCGGATATAAT-T
64 CCCGGATATAATAT
* * *
75224761 CCAGCATATAG-CCTGCAGGTCTTTAAGCCC
1 -CAGCACA-AGACCTGCGGGACTTTAAGCCC
75224791 GAATACACAT
Statistics
Matches: 90, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
75 19 0.21
76 45 0.50
77 20 0.22
78 6 0.07
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (77 bp):
CAGCACAAGACCTGCGGGACTTTAAGCCCAGATATAATACCAGCACAAGCCTGCAGGATTTAACC
CGGATATAATAT
Found at i:75233091 original size:17 final size:18
Alignment explanation
Indices: 75233064--75233105 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 18
75233054 TTTGAGTTAT
75233064 CCATGTGGGCCCACAAGG-
1 CCAT-TGGGCCCACAAGGC
*
75233082 CCATTGGGCCCACATGGC
1 CCATTGGGCCCACAAGGC
75233100 CCATTG
1 CCATTG
75233106 CGACCCATCG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.19, C:0.36, G:0.29, T:0.17
Consensus pattern (18 bp):
CCATTGGGCCCACAAGGC
Found at i:75236613 original size:33 final size:34
Alignment explanation
Indices: 75236570--75236672 Score: 95
Period size: 33 Copynumber: 3.1 Consensus size: 34
75236560 AAAACGCATG
*
75236570 CAGTAACAGTCTAGACCTGAGCCCTATCCAGTAT
1 CAGTAACAGTCTAGACCTGAGCCCTATACAGTAT
* * * *
75236604 CAGT-ACAGTCTGGGCCTTAGCCCTATACAGTAA
1 CAGTAACAGTCTAGACCTGAGCCCTATACAGTAT
* * * * *
75236637 CAG-AACAATCT-GGCTTTAGCCCTATACAGTAA
1 CAGTAACAGTCTAGACCTGAGCCCTATACAGTAT
75236669 CAGT
1 CAGT
75236673 GTGGGCCTAA
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
32 23 0.38
33 33 0.55
34 4 0.07
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (34 bp):
CAGTAACAGTCTAGACCTGAGCCCTATACAGTAT
Found at i:75236661 original size:32 final size:33
Alignment explanation
Indices: 75236589--75236671 Score: 114
Period size: 32 Copynumber: 2.5 Consensus size: 33
75236579 TCTAGACCTG
* * * *
75236589 AGCCCTATCCAGTATCAGTACAGTCTGGGCCTT
1 AGCCCTATACAGTAACAGAACAATCTGGGCCTT
*
75236622 AGCCCTATACAGTAACAGAACAATCT-GGCTTT
1 AGCCCTATACAGTAACAGAACAATCTGGGCCTT
75236654 AGCCCTATACAGTAACAG
1 AGCCCTATACAGTAACAG
75236672 TGTGGGCCTA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
32 23 0.51
33 22 0.49
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (33 bp):
AGCCCTATACAGTAACAGAACAATCTGGGCCTT
Found at i:75236909 original size:27 final size:26
Alignment explanation
Indices: 75236863--75236927 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
75236853 AGAAATAGTA
* * *
75236863 AATGTGGTA-AGCCACCAGTATCAGT
1 AATGTGGCATAGCCAACAGTAACAGT
75236888 AATTGTGGCATAGCCAACAGTAACAGT
1 AA-TGTGGCATAGCCAACAGTAACAGT
75236915 GAATGTGGCATAG
1 -AATGTGGCATAG
75236928 TCACTAGTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
25 2 0.06
26 6 0.18
27 24 0.71
28 2 0.06
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (26 bp):
AATGTGGCATAGCCAACAGTAACAGT
Found at i:75240726 original size:91 final size:91
Alignment explanation
Indices: 75240571--75240753 Score: 357
Period size: 91 Copynumber: 2.0 Consensus size: 91
75240561 AGTTACTTGC
*
75240571 TCTCTGGGCACAACAGAAATCAACGTATTCCACCAATAGTAGGCAGAATCACGTAGCAAGGAGAT
1 TCTCTGGGCACAACAGAAATCAACGTATTCCACCAATAGTAGGCAGAATCACGTAGCAAAGAGAT
75240636 AGTACACTTTAAGCATTCATCGGGTG
66 AGTACACTTTAAGCATTCATCGGGTG
75240662 TCTCTGGGCACAACAGAAATCAACGTATTCCACCAATAGTAGGCAGAATCACGTAGCAAAGAGAT
1 TCTCTGGGCACAACAGAAATCAACGTATTCCACCAATAGTAGGCAGAATCACGTAGCAAAGAGAT
75240727 AGTACACTTTAAGCATTCATCGGGTG
66 AGTACACTTTAAGCATTCATCGGGTG
75240753 T
1 T
75240754 GCAAGATAGT
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
91 91 1.00
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.22
Consensus pattern (91 bp):
TCTCTGGGCACAACAGAAATCAACGTATTCCACCAATAGTAGGCAGAATCACGTAGCAAAGAGAT
AGTACACTTTAAGCATTCATCGGGTG
Found at i:75242715 original size:40 final size:40
Alignment explanation
Indices: 75242664--75242853 Score: 269
Period size: 40 Copynumber: 4.8 Consensus size: 40
75242654 GAATATAGCT
*
75242664 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGT-
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTC
* * *
75242703 AGTTCGCACAAATGCCTTCGGGACTTAGCTCGG-ATATAGTA
1 A-CTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTC
75242744 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
* *
75242784 ACTAGCACAAATGCCTTCGGGACTTAGCCCAGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
*
75242824 ACTAGCACAAATGCCTTCGGGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
75242854 CGTTATCATC
Statistics
Matches: 140, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 1 0.01
40 136 0.97
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
Found at i:75242792 original size:80 final size:78
Alignment explanation
Indices: 75242638--75242853 Score: 267
Period size: 80 Copynumber: 2.7 Consensus size: 78
75242628 AAACCAAGTA
* * * *
75242638 CCTTCGGGATTTAACCGAATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
* *
75242703 AGTTCGCACAAATG
65 AGCTAGCACAAATG
75242717 CCTTCGGGACTTAGCTCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTA
1 CCTTCGGGACTTAGC-CGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TA
75242781 GTCA-CTAGCACAAATG
63 GT-AGCTAGCACAAATG
* *
75242797 CCTTCGGGACTTAGCCCAGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAG-CCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCC
75242854 CGTTATCATC
Statistics
Matches: 122, Mismatches: 9, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
79 16 0.13
80 104 0.85
81 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
GCTAGCACAAATG
Found at i:75245000 original size:56 final size:56
Alignment explanation
Indices: 75244929--75245104 Score: 280
Period size: 56 Copynumber: 3.1 Consensus size: 56
75244919 ATATATGTGT
* * * *
75244929 GTAAGACCATGTTTAATACGTTGGCATTGATATGTGATTTTGATATATGTGTACGA
1 GTAAGACCACGTTTAATACATTGGCATTGATATGTGATTCTGATATATGTGTGCGA
*
75244985 GTAAGACCACGTTTAATACATTGGCATCGATATGTGATTCTGATATATGTGTGCGA
1 GTAAGACCACGTTTAATACATTGGCATTGATATGTGATTCTGATATATGTGTGCGA
* * *
75245041 GTAAGACCACGTTTAATACATTGACATTGATATGTGATTCTGATTTATGTGTGTGA
1 GTAAGACCACGTTTAATACATTGGCATTGATATGTGATTCTGATATATGTGTGCGA
75245097 GTAAGACC
1 GTAAGACC
75245105 CTGTCTGGGC
Statistics
Matches: 111, Mismatches: 9, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
56 111 1.00
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.36
Consensus pattern (56 bp):
GTAAGACCACGTTTAATACATTGGCATTGATATGTGATTCTGATATATGTGTGCGA
Found at i:75245126 original size:112 final size:112
Alignment explanation
Indices: 75244929--75245135 Score: 281
Period size: 112 Copynumber: 1.8 Consensus size: 112
75244919 ATATATGTGT
* * * *
75244929 GTAAGACCATGTTTAATACGTTGGCATTGATATGTGATTTTGATATATGTGTACGAGTAAGACCA
1 GTAAGACCACGTTTAATACATTGACATTGATATGTGATTCTGATATATGTGTACGAGTAAGACCA
* * *
75244994 CGTTTAATACATTGGCATCGATATGTGATTCTGATATATGTGTGCGA
66 CGTCTAAGACAGTGGCATCGATATGTGATTCTGATATATGTGTGCGA
* **
75245041 GTAAGACCACGTTTAATACATTGACATTGATATGTGATTCTGATTTATGTGTGTGAGTAAGACC-
1 GTAAGACCACGTTTAATACATTGACATTGATATGTGATTCTGATATATGTGTACGAGTAAGACCA
** *
75245105 CTGTCTGGGCCAGTGGCATCGATATGTGATT
66 C-GTCTAAGACAGTGGCATCGATATGTGATT
75245136 ACATGTAAGA
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
111 1 0.01
112 80 0.99
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (112 bp):
GTAAGACCACGTTTAATACATTGACATTGATATGTGATTCTGATATATGTGTACGAGTAAGACCA
CGTCTAAGACAGTGGCATCGATATGTGATTCTGATATATGTGTGCGA
Found at i:75245129 original size:56 final size:56
Alignment explanation
Indices: 75244950--75245135 Score: 212
Period size: 56 Copynumber: 3.3 Consensus size: 56
75244940 TTTAATACGT
* * * * * *
75244950 TGGCATTGATATGTGATTTTGATATATGTGTACGAGTAAGACCACGTTTAATACAT
1 TGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCACGTCTAAGACAG
* * *
75245006 TGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCACGTTTAATACAT
1 TGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCACGTCTAAGACAG
* * * * ** *
75245062 TGACATTGATATGTGATTCTGATTTATGTGTGTGAGTAAGACC-CTGTCTGGGCCAG
1 TGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCAC-GTCTAAGACAG
75245118 TGGCATCGATATGTGATT
1 TGGCATCGATATGTGATT
75245136 ACATGTAAGA
Statistics
Matches: 114, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
55 1 0.01
56 113 0.99
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.36
Consensus pattern (56 bp):
TGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCACGTCTAAGACAG
Found at i:75247306 original size:26 final size:26
Alignment explanation
Indices: 75247277--75247341 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
75247267 AAAATTATAC
75247277 ATAATAAATAATA-AAAACAAAATAAT
1 ATAATAAATAATAGAAAA-AAAATAAT
* *
75247303 ATAATATATAATAGAATAAAAATAAT
1 ATAATAAATAATAGAAAAAAAATAAT
*
75247329 ATAATGAATAATA
1 ATAATAAATAATA
75247342 TATATAGTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 31 0.91
27 3 0.09
ACGTcount: A:0.68, C:0.02, G:0.03, T:0.28
Consensus pattern (26 bp):
ATAATAAATAATAGAAAAAAAATAAT
Found at i:75247315 original size:12 final size:12
Alignment explanation
Indices: 75247298--75247437 Score: 99
Period size: 12 Copynumber: 12.4 Consensus size: 12
75247288 TAAAAACAAA
75247298 ATAATATAATAT
1 ATAATATAATAT
*
75247310 ATAATAGAATA-
1 ATAATATAATAT
75247321 A-AA-ATAATAT
1 ATAATATAATAT
*
75247331 AATGA-ATAATAT
1 -ATAATATAATAT
75247343 AT-ATAGTAA-A-
1 ATAATA-TAATAT
*
75247353 ATGATATAATAT
1 ATAATATAATAT
*
75247365 ATAATAAAATAT
1 ATAATATAATAT
*
75247377 ATAA-ATAAAAT
1 ATAATATAATAT
75247388 AT-ATAATAATAT
1 ATAAT-ATAATAT
75247400 ATAA-ATAATAT
1 ATAATATAATAT
*
75247411 ATAA-ATAA-AA
1 ATAATATAATAT
75247421 ATAATAT-ATAT
1 ATAATATAATAT
75247432 AATAAT
1 -ATAAT
75247438 TTTTTACATA
Statistics
Matches: 104, Mismatches: 10, Indels: 28
0.73 0.07 0.20
Matches are distributed among these distances:
9 5 0.05
10 15 0.14
11 35 0.34
12 48 0.46
13 1 0.01
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (12 bp):
ATAATATAATAT
Found at i:75247360 original size:55 final size:57
Alignment explanation
Indices: 75247295--75247402 Score: 159
Period size: 55 Copynumber: 1.9 Consensus size: 57
75247285 TAATAAAAAC
* *
75247295 AAAATAATATAATATATAATAGAATA-A-AAATAATATA-ATGAATAATATATATAGT
1 AAAATAATATAATATATAATAAAATATATAAATAAAATATAT-AATAATATATATAGT
*
75247350 AAAATGATATAATATATAATAAAATATATAAATAAAATATATAATAATATATA
1 AAAATAATATAATATATAATAAAATATATAAATAAAATATATAATAATATATA
75247403 AATAATATAT
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
55 24 0.51
56 1 0.02
57 20 0.43
58 2 0.04
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (57 bp):
AAAATAATATAATATATAATAAAATATATAAATAAAATATATAATAATATATATAGT
Found at i:75247366 original size:20 final size:19
Alignment explanation
Indices: 75247295--75247435 Score: 102
Period size: 19 Copynumber: 7.7 Consensus size: 19
75247285 TAATAAAAAC
75247295 AAAATAATATAATATATAAT
1 AAAAT-ATATAATATATAAT
* *
75247315 AGAATA-AAAATAATATAAT
1 AAAATATATAAT-ATATAAT
* *
75247334 -GAATA-AT-ATATATAGT
1 AAAATATATAATATATAAT
75247350 AAAATGATATAATATATAAT
1 AAAAT-ATATAATATATAAT
*
75247370 AAAATATATAA-ATAAAAT
1 AAAATATATAATATATAAT
*
75247388 -ATATA-ATAATATATAA-
1 AAAATATATAATATATAAT
* *
75247404 ATAATATATAA-ATAAAAAT
1 AAAATATATAATAT-ATAAT
*
75247423 AATATATATAATA
1 AAAATATATAATA
75247436 ATTTTTTACA
Statistics
Matches: 96, Mismatches: 14, Indels: 22
0.73 0.11 0.17
Matches are distributed among these distances:
16 10 0.10
17 19 0.20
18 24 0.25
19 25 0.26
20 18 0.19
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (19 bp):
AAAATATATAATATATAAT
Found at i:75247377 original size:32 final size:31
Alignment explanation
Indices: 75247298--75247436 Score: 115
Period size: 34 Copynumber: 4.2 Consensus size: 31
75247288 TAAAAACAAA
* * *
75247298 ATAATATAATATATAATAGAATA-AAAATAAT
1 ATAATAAAATATATAATAAAATATATAAT-AT
75247329 ATAATGAATAATATATATAGTAAAATGATATAATAT
1 ATAAT-AA-AATATATA-A-TAAAAT-ATATAATAT
75247365 ATAATAAAATATATAAATAAAATATATAATA-
1 ATAATAAAATATAT-AATAAAATATATAATAT
75247396 ATATATAAATAATATATAAATAAAA-ATA-ATATAT
1 ATA-AT-AA-AATATAT-AATAAAATATATA-ATAT
75247430 ATAATAA
1 ATAATAA
75247437 TTTTTTACAT
Statistics
Matches: 93, Mismatches: 3, Indels: 23
0.78 0.03 0.19
Matches are distributed among these distances:
31 8 0.09
32 14 0.15
33 24 0.26
34 27 0.29
35 8 0.09
36 8 0.09
37 4 0.04
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (31 bp):
ATAATAAAATATATAATAAAATATATAATAT
Found at i:75247423 original size:25 final size:25
Alignment explanation
Indices: 75247358--75247435 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 25
75247348 GTAAAATGAT
75247358 ATAATATAT-AAT-AAAATATATAA
1 ATAATATATAAATAAAAATATATAA
* *
75247381 ATAA-A-ATATATAATAATATATAA
1 ATAATATATAAATAAAAATATATAA
*
75247404 ATAATATATAAATAAAAATAATATAT
1 ATAATATATAAATAAAAAT-ATATAA
75247430 ATAATA
1 ATAATA
75247436 ATTTTTTACA
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
21 2 0.04
22 3 0.07
23 18 0.40
24 1 0.02
25 10 0.22
26 11 0.24
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (25 bp):
ATAATATATAAATAAAAATATATAA
Found at i:75247431 original size:40 final size:43
Alignment explanation
Indices: 75247277--75247437 Score: 140
Period size: 40 Copynumber: 3.8 Consensus size: 43
75247267 AAAATTATAC
*
75247277 ATAATAAAT-AATAA-AAACAAAATAATATAAT-ATATAATAGA
1 ATAATAAATAAATAATAAATAAAAT-ATATAATAATATAATAGA
* * * * * *
75247318 ATAA-AAATAATATAATGAATAATATATATAGTAAAATGATATA
1 ATAATAAATAA-ATAATAAATAAAATATATAATAATATAATAGA
75247361 AT-ATATAATAAAATATATAAATAAAATATATAATAATAT-ATA-A
1 ATAATA-AAT-AAATA-ATAAATAAAATATATAATAATATAATAGA
* *
75247404 ATAATATATAAATAA-AAATAATATATATAATAAT
1 ATAATAAATAAATAATAAATAAAATATATAATAAT
75247438 TTTTTACATA
Statistics
Matches: 98, Mismatches: 13, Indels: 19
0.75 0.10 0.15
Matches are distributed among these distances:
40 22 0.22
41 6 0.06
42 16 0.16
43 21 0.21
44 12 0.12
45 21 0.21
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (43 bp):
ATAATAAATAAATAATAAATAAAATATATAATAATATAATAGA
Found at i:75247462 original size:19 final size:21
Alignment explanation
Indices: 75247424--75247462 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
75247414 AATAAAAATA
*
75247424 ATATATATAATAATTTTTTAC
1 ATATATATAATAATTGTTTAC
75247445 ATATATA-AATAA-TGTTTA
1 ATATATATAATAATTGTTTA
75247463 TAGTAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 5 0.29
21 7 0.41
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (21 bp):
ATATATATAATAATTGTTTAC
Found at i:75247511 original size:25 final size:25
Alignment explanation
Indices: 75247468--75247521 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
75247458 GTTTATAGTA
* *
75247468 AAAATAAATAATAATTAAAATATTT
1 AAAATAAATAATAATTAAAAAAATT
*
75247493 AAAATAAATAA-ATTATAAAAAAATT
1 AAAATAAATAATAAT-TAAAAAAATT
75247518 AAAA
1 AAAA
75247522 GGATTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 2 0.08
25 23 0.92
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (25 bp):
AAAATAAATAATAATTAAAAAAATT
Found at i:75247518 original size:34 final size:37
Alignment explanation
Indices: 75247471--75247539 Score: 92
Period size: 34 Copynumber: 1.9 Consensus size: 37
75247461 TATAGTAAAA
*
75247471 ATAAATAATAATTAAAA-TATTTAAAA-TAAATAAATT
1 ATAAATAATAATTAAAAGGA-TTAAAATTAAATAAATT
75247507 ATAAA-AA-AATTAAAAGGATTAAAATTAAATAAA
1 ATAAATAATAATTAAAAGGATTAAAATTAAATAAA
75247540 AAGAAAAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
34 14 0.47
35 11 0.37
36 5 0.17
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (37 bp):
ATAAATAATAATTAAAAGGATTAAAATTAAATAAATT
Found at i:75248707 original size:90 final size:90
Alignment explanation
Indices: 75248570--75249400 Score: 1261
Period size: 90 Copynumber: 9.2 Consensus size: 90
75248560 CTCCTTATCA
* * * * **
75248570 AATATAGAGACGCCAAATCTG-CTATCTTCGATCAGCTTCAATGTAAACACACAAATGTTTGATC
1 AATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATC
* *
75248634 TGCTATCTTCGATCTGCTCCCGGTCT
65 TACTATCTTCGATCTGCTCCCCGTCT
* * * *
75248660 AAAACAGAGACGCCAAATCTATCATCTGT-GATCTGCTTCGATGTAAACACATGAATATCAGATC
1 AATACAGAGACGCCAAATCTGTCATCT-TCGATCTGCTTCGATGTAAACACACGAATGTCAGATC
*
75248724 TACTATCTTCGATCTGCTCCCCGTAT
65 TACTATCTTCGATCTGCTCCCCGTCT
* *
75248750 AATACAGAGACGCCAAATCTGTCATCTTCGATTTGCTTCGATGTAAACACATGAATGTCAGATCT
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCT
*
75248815 ACTATCTTCGATCTGCTCCCCGTAT
66 ACTATCTTCGATCTGCTCCCCGTCT
* * *
75248840 AATACAGAGACACCAAATCTGTCATCTTCAATCTGCTTCGATGTAAACACACAAATGTCAGATCT
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCT
*
75248905 ACTATCTTCGATCTGCTCCCCGTAT
66 ACTATCTTCGATCTGCTCCCCGTCT
* * ** *
75248930 AATACAGAGACGCCAAATCTATCATCTTCGATCTGCTTCGATGTCAACACACGAATACCAAATCT
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCT
* *
75248995 ACTATCTTCGATCTGTTCCCCATCT
66 ACTATCTTCGATCTGCTCCCCGTCT
* *
75249020 AATACAGAGACGCCAAATCTATCATCTTCGATCTGCTTCGATGTAAACACATGAATGTCAGATCT
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCT
*
75249085 ACTATCTTCGGTCTGCTCCCCGTCT
66 ACTATCTTCGATCTGCTCCCCGTCT
* *
75249110 AATACAGAGACGCCAAATCTGTCATCTTCGATCTACTTTGATGTAAACACACGAATGTCAGATCT
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCT
*
75249175 ACTATCTTCGGTCTGCTCCCCGTCT
66 ACTATCTTCGATCTGCTCCCCGTCT
* *
75249200 AATACAGAGACGCCAAATCTGTCATCTTCTATCTGCTTCGATGTAAACACACAAATGTCAGATCT
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCT
75249265 ACTATCTTCGATCTGCTCCCCGTCT
66 ACTATCTTCGATCTGCTCCCCGTCT
* * * *
75249290 AATATAGAGATGCAAAATCTGTCATCTTCGATCTGCTTCAATGTAAACACACGAATGTCAGATCT
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCT
*
75249355 ACTATCTTCAATCTGCTCCCCGTCT
66 ACTATCTTCGATCTGCTCCCCGTCT
*
75249380 AATACAGAAACGCCAAATCTG
1 AATACAGAGACGCCAAATCTG
75249401 CTTCCTCGAT
Statistics
Matches: 677, Mismatches: 61, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
89 1 0.00
90 674 1.00
91 2 0.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (90 bp):
AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCT
ACTATCTTCGATCTGCTCCCCGTCT
Found at i:75264173 original size:37 final size:38
Alignment explanation
Indices: 75264112--75264272 Score: 200
Period size: 38 Copynumber: 4.2 Consensus size: 38
75264102 CAACACAAAA
* * *
75264112 CCTGCGGGACTTTAAGCTCAGATATAATACCAGCAC-TAG
1 CCTGCGGGA-TTTAA-CCCGGATATAATACCAGCACGAAG
* * *
75264151 GCTGCAGGATTTAACCCGGATATAATACCAGTACGAAG
1 CCTGCGGGATTTAACCCGGATATAATACCAGCACGAAG
*
75264189 CCTGCGGGATTTAACCCGGATATATTACCAGCACGAAG
1 CCTGCGGGATTTAACCCGGATATAATACCAGCACGAAG
* *
75264227 CCTGCGGGATTTAACCCGGATATAATTCCAGCA-TATAG
1 CCTGCGGGATTTAACCCGGATATAATACCAGCACGA-AG
75264265 CCTGCGGG
1 CCTGCGGG
75264273 TCTTTAAGCC
Statistics
Matches: 107, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
37 18 0.17
38 82 0.77
39 7 0.07
ACGTcount: A:0.29, C:0.25, G:0.24, T:0.22
Consensus pattern (38 bp):
CCTGCGGGATTTAACCCGGATATAATACCAGCACGAAG
Found at i:75276120 original size:33 final size:33
Alignment explanation
Indices: 75276083--75276167 Score: 116
Period size: 33 Copynumber: 2.6 Consensus size: 33
75276073 TCTAGACCTG
* * *
75276083 AGCCCTATCCAGTATCAGTACAGTCTGGGCCCT
1 AGCCCTATACAGTAACAGTACAATCTGGGCCCT
* **
75276116 AGCCCTATACAGTAACAGAACAATCTGGGCTTT
1 AGCCCTATACAGTAACAGTACAATCTGGGCCCT
75276149 AGCCCTATACAGTAACAGT
1 AGCCCTATACAGTAACAGT
75276168 GTGGGCCTAA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (33 bp):
AGCCCTATACAGTAACAGTACAATCTGGGCCCT
Found at i:75276409 original size:27 final size:26
Alignment explanation
Indices: 75276358--75276422 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
75276348 AGAAATAGTA
* *
75276358 AATGTGGCA-AGCCACCAGTATCAGT
1 AATGTGGCATAGCCAACAGTAACAGT
75276383 AATTGTGGCATAGCCAACAGTAACAGT
1 AA-TGTGGCATAGCCAACAGTAACAGT
75276410 GAATGTGGCATAG
1 -AATGTGGCATAG
75276423 TCACTAGTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
25 2 0.06
26 7 0.20
27 24 0.69
28 2 0.06
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (26 bp):
AATGTGGCATAGCCAACAGTAACAGT
Found at i:75276431 original size:27 final size:25
Alignment explanation
Indices: 75276358--75276431 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 25
75276348 AGAAATAGTA
*
75276358 AATGTGGCA-AGCCACCAGTATCAGT
1 AATGTGGCATAGCCA-CAGTAACAGT
75276383 AATTGTGGCATAGCCAACAGTAACAGT
1 AA-TGTGGCATAGCC-ACAGTAACAGT
*
75276410 GAATGTGGCATAGTCACTAGTA
1 -AATGTGGCATAGCCAC-AGTA
75276432 TAATACTTCC
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
25 2 0.05
26 9 0.21
27 28 0.67
28 3 0.07
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (25 bp):
AATGTGGCATAGCCACAGTAACAGT
Found at i:75276605 original size:27 final size:27
Alignment explanation
Indices: 75276575--75276635 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
75276565 CATAATCGTA
75276575 ATTTTACCATACAAGGGTATTACGGTC
1 ATTTTACCATACAAGGGTATTACGGTC
* *
75276602 ATTTTACCTTACAAGGGTATTACGGTT
1 ATTTTACCATACAAGGGTATTACGGTC
75276629 ATTTTAC
1 ATTTTAC
75276636 AAATTAGGGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.39
Consensus pattern (27 bp):
ATTTTACCATACAAGGGTATTACGGTC
Found at i:75276731 original size:26 final size:27
Alignment explanation
Indices: 75276616--75276747 Score: 115
Period size: 27 Copynumber: 4.9 Consensus size: 27
75276606 TACCTTACAA
* * *
75276616 GGGTATTACGGTTATTTTACAAATTAG
1 GGGTATTTCGGTAATTTTACAAATCAG
* * * * *
75276643 GGATATTTCAGTAATTTCACAAGTCAA
1 GGGTATTTCGGTAATTTTACAAATCAG
* * * *
75276670 GGGTATTTTGGCAATTTTAC-AACCCG
1 GGGTATTTCGGTAATTTTACAAATCAG
*
75276696 AGGGTATTTCGGTAATTTTA-AAATTAG
1 -GGGTATTTCGGTAATTTTACAAATCAG
*
75276723 GGGTATTTCGATAATTTTACAAATC
1 GGGTATTTCGGTAATTTTACAAATC
75276748 GCGGTCTTAA
Statistics
Matches: 78, Mismatches: 24, Indels: 6
0.72 0.22 0.06
Matches are distributed among these distances:
26 20 0.26
27 58 0.74
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCAG
Found at i:75276915 original size:34 final size:34
Alignment explanation
Indices: 75276872--75276938 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
75276862 CACGCTCATG
*
75276872 TGGCGCATTTAGACCAAATTTAGATAAAACTATA
1 TGGCGCATTTAGACCAAATTTACATAAAACTATA
*
75276906 TGGCGCATTTAGCCCAAATTTACATAAAACTAT
1 TGGCGCATTTAGACCAAATTTACATAAAACTAT
75276939 GTGTACACCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (34 bp):
TGGCGCATTTAGACCAAATTTACATAAAACTATA
Found at i:75279176 original size:45 final size:45
Alignment explanation
Indices: 75279121--75279249 Score: 168
Period size: 45 Copynumber: 2.9 Consensus size: 45
75279111 AAACCATAGG
* * * *
75279121 ATCGAGATATGTGTTTTCGTGTAAGACCAGGTCTAGGAGGTTGGC
1 ATCGATATATGTGTTTTCGTGTAAGACCACGTCTAGGACGTTGGA
75279166 ATCGATATATGTGTTTTCGTGTAAGACCACGTCTAGGACGTTGGA
1 ATCGATATATGTGTTTTCGTGTAAGACCACGTCTAGGACGTTGGA
* * * * * *
75279211 ATTGATCTATGTGGTTACGTGTAAGACCATGTCTGGGAC
1 ATCGATATATGTGTTTTCGTGTAAGACCACGTCTAGGAC
75279250 ATCGACATCG
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 74 1.00
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.33
Consensus pattern (45 bp):
ATCGATATATGTGTTTTCGTGTAAGACCACGTCTAGGACGTTGGA
Found at i:75292794 original size:20 final size:20
Alignment explanation
Indices: 75292769--75292814 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
75292759 AGGGCACCGA
75292769 GCGTGTCCCTAGCCACACGG
1 GCGTGTCCCTAGCCACACGG
75292789 GCGTGTCCCTAGCCACACGG
1 GCGTGTCCCTAGCCACACGG
75292809 GCGTGT
1 GCGTGT
75292815 GTGACTACAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.13, C:0.37, G:0.33, T:0.17
Consensus pattern (20 bp):
GCGTGTCCCTAGCCACACGG
Found at i:75293972 original size:44 final size:44
Alignment explanation
Indices: 75293813--75293977 Score: 145
Period size: 46 Copynumber: 3.6 Consensus size: 44
75293803 AATGAGAGTC
* *
75293813 AGTGTAAGACCATGTCTGGGACATGGCATCGGTATTAAGACGA-GTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG--CTACGA-GATGTGCT
* ** * *
75293861 AGTGTAAGACATGTCTGGGATATATATCAGCCT-CGAGATGTTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCTACGAGATG-T-GCT
* * * *
75293907 AATGTCAGACATGTCTAGGACATGCGTCGGCTACGAGATGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGCT
75293951 AGTGTAAGACATGTCTGGGACATGCAT
1 AGTGTAAGACATGTCTGGGACATGCAT
75293978 TGGCACTATT
Statistics
Matches: 92, Mismatches: 20, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
43 2 0.02
44 28 0.30
45 6 0.07
46 33 0.36
47 14 0.15
48 9 0.10
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGCT
Found at i:75306586 original size:16 final size:18
Alignment explanation
Indices: 75306555--75306587 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
75306545 AACTCGTCAC
75306555 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
75306573 ACTAT-TAT-GTTTTGG
1 ACTATCTATCGTTTTGG
75306588 AATTCGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:75311725 original size:42 final size:42
Alignment explanation
Indices: 75311648--75311804 Score: 117
Period size: 42 Copynumber: 3.7 Consensus size: 42
75311638 AGCTCGTACA
* * ***
75311648 ATGCCAATGTCCTAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACAG-GGTCTTACACAAAATCAAATA-CG
75311691 ATGCC-ACTGTCCCA-ACAGGGTCTTACACAAAATCAAATACG
1 ATGCCAAC-GTCCCAGACAGGGTCTTACACAAAATCAAATACG
* * * *
75311732 ATGCCAACGTCTCAGACATGGTCTTACACGTAAATACCAAAT-TG
1 ATGCCAACGTCCCAGACAGGGTCTTACAC--AAA-ATCAAATACG
* *
75311776 ATGTCAACGTCCTAGAC-GTGGTCTTACAC
1 ATGCCAACGTCCCAGACAG-GGTCTTACAC
75311805 GATATCACAT
Statistics
Matches: 93, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
41 12 0.13
42 36 0.39
43 11 0.12
44 28 0.30
45 6 0.06
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACAGGGTCTTACACAAAATCAAATACG
Found at i:75314990 original size:20 final size:19
Alignment explanation
Indices: 75314962--75315008 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
75314952 TTAAAAATTA
* *
75314962 AAATATAAATATTAAAGATC
1 AAATTTAAAAATT-AAGATC
*
75314982 AAATTTAAAAATTAATATC
1 AAATTTAAAAATTAAGATC
75315001 AAATTTAA
1 AAATTTAA
75315009 GTATAGTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (19 bp):
AAATTTAAAAATTAAGATC
Found at i:75315129 original size:2 final size:2
Alignment explanation
Indices: 75315122--75315170 Score: 62
Period size: 2 Copynumber: 24.5 Consensus size: 2
75315112 GTCTTCCTTT
* * * *
75315122 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TT TA TA TA TT TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
75315164 TA TA TA T
1 TA TA TA T
75315171 TATTAGTTAC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (2 bp):
TA
Found at i:75319571 original size:26 final size:25
Alignment explanation
Indices: 75319518--75319568 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
75319508 CTGGACAAAA
75319518 GAAAAAATTAAGTTAGGGAATTGGG
1 GAAAAAATTAAGTTAGGGAATTGGG
* *
75319543 GAAAAAATTAAGTTTGGGATTTGGG
1 GAAAAAATTAAGTTAGGGAATTGGG
75319568 G
1 G
75319569 GAATAAGGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.00, G:0.33, T:0.27
Consensus pattern (25 bp):
GAAAAAATTAAGTTAGGGAATTGGG
Found at i:75323075 original size:2 final size:2
Alignment explanation
Indices: 75323068--75323116 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
75323058 GCCATATCCT
75323068 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
75323110 TC TC TC T
1 TC TC TC T
75323117 GTTTTCAATT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:75329344 original size:46 final size:46
Alignment explanation
Indices: 75329156--75329463 Score: 178
Period size: 46 Copynumber: 6.5 Consensus size: 46
75329146 GTGTCAATGC
* * *
75329156 CATGTCCCAAACATGGTCTTACACT-GATGATCATCATCGAGGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTTA-CATC-TCGAGGCCGATG
* * * * * * * * *
75329204 CCATGTGCCAGACAAGGTCTTACACTAGCTCTCTCATATCCATGCTGATTC
1 -CATGTCCCAGAC-ATGTCTTACACTGGCT-T-ACATCTCGAGGCCGA-TG
* * *
75329255 CATGTCTCAAACATGGTCTTACACTGAC--ACATCTCGTA-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCG-AGGCCGATG
* *
75329300 CATGTCCCAGACATGTCTTACACTGGCTTACATCCCGAGGCCGATA
1 CATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCCGATG
* * * * * * *
75329346 CATGTCCCGGACATGTCTTACACTAGCACT-CGTCTCAATGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGC-TTACATCTCGAGGCCGATG
** * * *
75329392 CCATGTCCCAGACATGGTCTTACACTGGCTCCCATAAT-GTGGTCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTTACAT-CTCGAGGCCGATG
*
75329440 CATGTCCCAGACATATCTTACACT
1 CATGTCCCAGACATGTCTTACACT
75329464 AGCTCACACA
Statistics
Matches: 196, Mismatches: 48, Indels: 33
0.71 0.17 0.12
Matches are distributed among these distances:
44 12 0.06
45 14 0.07
46 66 0.34
47 29 0.15
48 19 0.10
49 22 0.11
50 30 0.15
51 4 0.02
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCCGATG
Found at i:75335531 original size:10 final size:10
Alignment explanation
Indices: 75335516--75335575 Score: 79
Period size: 10 Copynumber: 6.0 Consensus size: 10
75335506 TAATTTTAGG
75335516 ATTTAT-TTT
1 ATTTATCTTT
75335525 CATTTATCTTT
1 -ATTTATCTTT
75335536 ATTTATCTTT
1 ATTTATCTTT
*
75335546 AATTATCTTT
1 ATTTATCTTT
75335556 ATTTAT-TTGT
1 ATTTATCTT-T
75335566 ATTTATCTTT
1 ATTTATCTTT
75335576 TAGAATTTCA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:75336324 original size:17 final size:18
Alignment explanation
Indices: 75336292--75336325 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
75336282 TATTCTTCAT
*
75336292 TTTAATTTTCGTAATTTA
1 TTTAATTTTCGCAATTTA
75336310 TTTAA-TTTCGCAATTT
1 TTTAATTTTCGCAATTT
75336326 TGATTCAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.26, C:0.09, G:0.06, T:0.59
Consensus pattern (18 bp):
TTTAATTTTCGCAATTTA
Found at i:75339306 original size:16 final size:16
Alignment explanation
Indices: 75339278--75339320 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
75339268 TTTATTTTTA
75339278 TTAA-TTTAATTTAAT
1 TTAATTTTAATTTAAT
* *
75339293 TTAATTTTACTTTATT
1 TTAATTTTAATTTAAT
75339309 TTAATATTTAAT
1 TTAAT-TTTAAT
75339321 ATTTTATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 4 0.17
16 14 0.61
17 5 0.22
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (16 bp):
TTAATTTTAATTTAAT
Found at i:75339308 original size:35 final size:31
Alignment explanation
Indices: 75339268--75339341 Score: 78
Period size: 30 Copynumber: 2.3 Consensus size: 31
75339258 AACCCAATTT
*
75339268 TTTATTTTTATTAATTTAATTTAATTTAATTTTAC
1 TTTATTTTTAAT-ATTTAA--T-ATTTAATTTTAC
* *
75339303 TTTA-TTTTAATATTTAATATTTTATTTTAT
1 TTTATTTTTAATATTTAATATTTAATTTTAC
75339333 TTTATTTTT
1 TTTATTTTT
75339342 TTGGATGTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
30 14 0.40
31 5 0.14
33 6 0.17
34 6 0.17
35 4 0.11
ACGTcount: A:0.28, C:0.01, G:0.00, T:0.70
Consensus pattern (31 bp):
TTTATTTTTAATATTTAATATTTAATTTTAC
Found at i:75340319 original size:8 final size:8
Alignment explanation
Indices: 75340289--75340322 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
75340279 AAATAAAATT
75340289 AAAAAAATG
1 AAAAAAA-G
75340298 -AAAAAAG
1 AAAAAAAG
75340305 AAAAAAAG
1 AAAAAAAG
75340313 AAAAAAAG
1 AAAAAAAG
75340321 AA
1 AA
75340323 GGAGGTATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 1 0.04
8 23 0.96
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (8 bp):
AAAAAAAG
Found at i:75340322 original size:16 final size:16
Alignment explanation
Indices: 75340289--75340318 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
75340279 AAATAAAATT
75340289 AAAAAAATGAAAAAAG
1 AAAAAAATGAAAAAAG
75340305 AAAAAAA-GAAAAAA
1 AAAAAAATGAAAAAA
75340319 AGAAGGAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.87, C:0.00, G:0.10, T:0.03
Consensus pattern (16 bp):
AAAAAAATGAAAAAAG
Found at i:75340958 original size:10 final size:9
Alignment explanation
Indices: 75340943--75340998 Score: 58
Period size: 10 Copynumber: 5.7 Consensus size: 9
75340933 TAATTTTAGG
75340943 ATTTATTTT
1 ATTTATTTT
75340952 CATTTATCTTT
1 -ATTTAT-TTT
75340963 ATTTATTTTT
1 ATTTA-TTTT
*
75340973 AATTATCTTT
1 ATTTAT-TTT
75340983 ATTTATTTGT
1 ATTTATTT-T
75340993 ATTTAT
1 ATTTAT
75340999 CTTTTAGAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
9 3 0.08
10 33 0.82
11 4 0.10
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.70
Consensus pattern (9 bp):
ATTTATTTT
Found at i:75340968 original size:20 final size:19
Alignment explanation
Indices: 75340943--75341002 Score: 84
Period size: 20 Copynumber: 3.0 Consensus size: 19
75340933 TAATTTTAGG
75340943 ATTTATTTTCATTTATCTTT
1 ATTTATTTT-ATTTATCTTT
*
75340963 ATTTATTTTTAATTATCTTT
1 ATTTA-TTTTATTTATCTTT
75340983 ATTTATTTGTATTTATCTTT
1 ATTTATTT-TATTTATCTTT
75341003 TAGAATTTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
19 3 0.08
20 29 0.81
21 4 0.11
ACGTcount: A:0.22, C:0.07, G:0.02, T:0.70
Consensus pattern (19 bp):
ATTTATTTTATTTATCTTT
Found at i:75340996 original size:30 final size:31
Alignment explanation
Indices: 75340945--75341004 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
75340935 ATTTTAGGAT
75340945 TTATTTTCATTTATCTTTATTTAT-TTTTAA
1 TTATTTTCATTTATCTTTATTTATCTTTTAA
75340975 TTATCTTT-ATTTAT-TTGTATTTATCTTTTA
1 TTAT-TTTCATTTATCTT-TATTTATCTTTTA
75341005 GAATTTCATT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
29 2 0.07
30 17 0.63
31 8 0.30
ACGTcount: A:0.22, C:0.07, G:0.02, T:0.70
Consensus pattern (31 bp):
TTATTTTCATTTATCTTTATTTATCTTTTAA
Found at i:75341695 original size:35 final size:35
Alignment explanation
Indices: 75341649--75341718 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
75341639 GGAACGAGAC
75341649 AACTGGAGGCTGGAATCTCGCCACATAAGAAACTT
1 AACTGGAGGCTGGAATCTCGCCACATAAGAAACTT
75341684 AACTGGAGGCTGGAATCTCGCCACATAAGAAACTT
1 AACTGGAGGCTGGAATCTCGCCACATAAGAAACTT
75341719 TCTCTTTTCC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (35 bp):
AACTGGAGGCTGGAATCTCGCCACATAAGAAACTT
Found at i:75351813 original size:40 final size:40
Alignment explanation
Indices: 75351762--75351951 Score: 278
Period size: 40 Copynumber: 4.8 Consensus size: 40
75351752 GAATATAGCT
* *
75351762 ACTCGCTCAAATGCCTTCGGGACTTAGCCTGG-ATATAGT-
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTC
* *
75351801 AGTTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 A-CTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTC
75351842 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
*
75351882 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
*
75351922 ACTAGCACAAATGCCTTCGGGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
75351952 CGTTATCATC
Statistics
Matches: 142, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 1 0.01
40 138 0.97
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
Found at i:75351890 original size:80 final size:79
Alignment explanation
Indices: 75351736--75351951 Score: 278
Period size: 80 Copynumber: 2.7 Consensus size: 79
75351726 AAACCAAGTA
* * * * *
75351736 CCTTCGGGATTTA-ACCGAATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCTGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
* *
75351800 TAGTTCGCACAAATG
65 TAGCTAGCACAAATG
75351815 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTA
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TA
75351879 GTCA-CTAGCACAAATG
64 GT-AGCTAGCACAAATG
*
75351895 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCC
75351952 CGTTATCATC
Statistics
Matches: 123, Mismatches: 9, Indels: 9
0.87 0.06 0.06
Matches are distributed among these distances:
79 15 0.12
80 107 0.87
81 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AGCTAGCACAAATG
Found at i:75354493 original size:17 final size:17
Alignment explanation
Indices: 75354471--75354513 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
75354461 GGGGCCATAT
75354471 GGGCCCAATGGGCCTAC
1 GGGCCCAATGGGCCTAC
75354488 GGGCCCAATGGGCCTAC
1 GGGCCCAATGGGCCTAC
75354505 GGGCCCAAT
1 GGGCCCAAT
75354514 TGGATAAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.19, C:0.35, G:0.35, T:0.12
Consensus pattern (17 bp):
GGGCCCAATGGGCCTAC
Found at i:75354715 original size:27 final size:27
Alignment explanation
Indices: 75354685--75354890 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
75354675 TTAGTTTACC
*
75354685 AAATTACGAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
75354712 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
75354739 AAATCACCAAAATACCGTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
**
75354766 AAATTACCAAAATACCCCCAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
75354793 AAATTACCAAAATACCCCAGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
75354820 AAATTACCAAAATACCCCTAGTTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
75354847 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
75354874 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
75354891 TCGACCTGTA
Statistics
Matches: 159, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 159 1.00
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:75354752 original size:54 final size:54
Alignment explanation
Indices: 75354685--75354947 Score: 269
Period size: 54 Copynumber: 4.9 Consensus size: 54
75354675 TTAGTTTACC
* * * * *
75354685 AAATTACGAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTA
* ** *
75354739 AAATCACCAAAATACCGTTGGTTTGTAAAATTACCAAAATACCCCCAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTA
* *
75354793 AAATTACCAAAATACCCCAGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTA
** * ** * **
75354847 AAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAG-TTTGTA
*** ** *
75354901 AAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCCTA
1 AAATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCCTA
75354948 ATTTACAAAA
Statistics
Matches: 171, Mismatches: 35, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
53 9 0.05
54 158 0.92
55 4 0.02
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTA
Found at i:75354901 original size:81 final size:81
Alignment explanation
Indices: 75354685--75354960 Score: 286
Period size: 81 Copynumber: 3.4 Consensus size: 81
75354675 TTAGTTTACC
* ** * * *
75354685 AAATTACGAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCTCGGTTTGTAAAATTACCAAA
** *
75354750 ATACCGTTGGTTTGTA
66 ATACCCCTAGTTTGTA
* * *
75354766 AAATTACCAAAATACCCCCAGTTTGTAAAATTACCAAAATACCC-CAGGTTTGTAAAATTACCAA
1 AAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCTC-GGTTTGTAAAATTACCAA
*
75354830 AATACCCCTAGTTTGTG
65 AATACCCCTAGTTTGTA
* * *** ***
75354847 AAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATACCCTCGACCTGTAAAATTATTGAA
1 AAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCTCGGTTTGTAAAATTACCAAA
* *
75354912 ATA-CCCTCGACTTGTA
66 ATACCCCTAG-TTTGTA
* **
75354928 AAATTACCAAAGTACCCCTAATTTACAAAATTA
1 AAATTACCAAAATACCCCTAATTTGTAAAATTA
75354961 TGGTTTTACC
Statistics
Matches: 163, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
80 5 0.03
81 157 0.96
82 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCTCGGTTTGTAAAATTACCAAA
ATACCCCTAGTTTGTA
Found at i:75354943 original size:27 final size:26
Alignment explanation
Indices: 75354685--75354945 Score: 216
Period size: 27 Copynumber: 9.7 Consensus size: 26
75354675 TTAGTTTACC
* *
75354685 AAATTACGAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* * * *
75354712 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCC-CGATTTGTA
* ** *
75354739 AAATCACCAAAATACCGTTGGTTTGTA
1 AAATTACCAAAATACC-CCGATTTGTA
*
75354766 AAATTACCAAAATACCCCCAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
*
75354793 AAATTACCAAAATACCCCAGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* *
75354820 AAATTACCAAAATACCCCTAGTTTGTG
1 AAATTACCAAAATACCCCGA-TTTGTA
* *
75354847 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCC-GATTTGTA
** **
75354874 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
*** *
75354901 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
*
75354928 AAATTACCAAAGTACCCC
1 AAATTACCAAAATACCCC
75354946 TAATTTACAA
Statistics
Matches: 197, Mismatches: 30, Indels: 15
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 194 0.98
28 2 0.01
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (26 bp):
AAATTACCAAAATACCCCGATTTGTA
Found at i:75355028 original size:27 final size:27
Alignment explanation
Indices: 75354986--75355309 Score: 364
Period size: 27 Copynumber: 12.0 Consensus size: 27
75354976 TTTACAATAT
*
75354986 TACCGAAATACTCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
*
75355013 TACCGAAATACCCTTGCAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* *
75355040 TACTGAAATACCCCTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* *
75355067 TACCGAAATACCCTAGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
** * *
75355094 TACTAAAATACCCTTATAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
*
75355121 TAACGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* * * *
75355148 TACTGAAATACCCCTGTGGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
** * *
75355175 TACTAAAATACCCTTATAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
*
75355202 TAACGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* * * *
75355229 TACTGAAATACCCCTGTGGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
** *
75355256 TACTAAAATACCCCTT-TAGGGTAGAAT
1 TACCGAAATA-CCCTTGTAGGGTAGAAA
* *
75355283 TACCGAGATACCCTTGTGGGGTA-AAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
75355309 T
1 T
75355310 TACCATTTTA
Statistics
Matches: 250, Mismatches: 45, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
26 8 0.03
27 238 0.95
28 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.25
Consensus pattern (27 bp):
TACCGAAATACCCTTGTAGGGTAGAAA
Found at i:75355324 original size:81 final size:81
Alignment explanation
Indices: 75354990--75355309 Score: 450
Period size: 81 Copynumber: 4.0 Consensus size: 81
75354980 CAATATTACC
* * * * ** ** * *
75354990 GAAATACTCTTGTAGGGTAGAAATACCGAAATACCCTTGCAGGGTAGAAAT-ACTGAAATACCCC
1 GAAATACCCCTGTGGGGTAGAATTACTAAAATACCCTTATAGGGTAGAATTAAC-GAAATACCCT
*
75355054 TGTAGGGTAGAAATACC
65 TGTAGGGTAGAAATACT
*
75355071 GAAATA-CCCTAGTAGGGTAGAATTACTAAAATACCCTTATAGGGTAGAATTAACGAAATACCCT
1 GAAATACCCCT-GTGGGGTAGAATTACTAAAATACCCTTATAGGGTAGAATTAACGAAATACCCT
75355135 TGTAGGGTAGAAATACT
65 TGTAGGGTAGAAATACT
75355152 GAAATACCCCTGTGGGGTAGAATTACTAAAATACCCTTATAGGGTAGAATTAACGAAATACCCTT
1 GAAATACCCCTGTGGGGTAGAATTACTAAAATACCCTTATAGGGTAGAATTAACGAAATACCCTT
75355217 GTAGGGTAGAAATACT
66 GTAGGGTAGAAATACT
* *
75355233 GAAATACCCCTGTGGGGTAGAATTACTAAAATACCCCTT-TAGGGTAGAATTACCGAGATACCCT
1 GAAATACCCCTGTGGGGTAGAATTACTAAAATA-CCCTTATAGGGTAGAATTAACGAAATACCCT
*
75355297 TGTGGGGTA-AAAT
65 TGTAGGGTAGAAAT
75355310 TACCATTTTA
Statistics
Matches: 221, Mismatches: 14, Indels: 9
0.91 0.06 0.04
Matches are distributed among these distances:
80 6 0.03
81 204 0.92
82 11 0.05
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (81 bp):
GAAATACCCCTGTGGGGTAGAATTACTAAAATACCCTTATAGGGTAGAATTAACGAAATACCCTT
GTAGGGTAGAAATACT
Found at i:75355698 original size:27 final size:26
Alignment explanation
Indices: 75355660--75355719 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
75355650 ATATGTATAT
* *
75355660 ATATTTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
75355686 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
75355713 ATATCTG
1 ATATCTG
75355720 GTGACTTCGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:75355719 original size:21 final size:21
Alignment explanation
Indices: 75355693--75355741 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
75355683 ACAATATCTG
75355693 TATCTGGTGACTTCGTCACAA
1 TATCTGGTGACTTCGTCACAA
75355714 TATCTGGTGACTTCGTCACAA
1 TATCTGGTGACTTCGTCACAA
75355735 TATCTGG
1 TATCTGG
75355742 CAGCCTCGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.35
Consensus pattern (21 bp):
TATCTGGTGACTTCGTCACAA
Found at i:75355868 original size:6 final size:6
Alignment explanation
Indices: 75355859--75356051 Score: 128
Period size: 6 Copynumber: 31.3 Consensus size: 6
75355849 TTGCATTCAC
* *
75355859 ATTCTG ATTCTG ATTCT- ATTACCTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* *
75355909 ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * * *
75355958 ATTCTG -TTACCTA ATTCTG ATTTTG ATTTTG ATTTTG ATTCTG -TCACCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * *
75356008 ATTTTG ATTTTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
75356052 AATGTTTCTT
Statistics
Matches: 150, Mismatches: 20, Indels: 34
0.74 0.10 0.17
Matches are distributed among these distances:
5 11 0.07
6 118 0.79
7 13 0.09
8 8 0.05
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:75355926 original size:25 final size:25
Alignment explanation
Indices: 75355859--75355926 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
75355849 TTGCATTCAC
* *
75355859 ATTCTGATTCTGATTCTATTACCTG
1 ATTCTGATTCTGATTCTGTTACCTA
*
75355884 ATACTGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTA
*
75355909 ATTCTGATTCTGGTTCTG
1 ATTCTGATTCTGATTCTG
75355927 ATTCTGATTC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACCTA
Found at i:75355928 original size:37 final size:37
Alignment explanation
Indices: 75355881--75355963 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
75355871 ATTCTATTAC
* *
75355881 CTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
* *
75355918 CTGGTTCTGATTCTGATTCTGTTACCTGATACTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
75355955 CTGATTCTG
1 CTGATTCTG
75355964 TTACCTAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.18, C:0.19, G:0.17, T:0.46
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
Found at i:75355954 original size:25 final size:25
Alignment explanation
Indices: 75355924--75355985 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 25
75355914 GATTCTGGTT
*
75355924 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
75355949 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
*
75355974 CTGATTTTGATT
1 CTGATTCTGATT
75355986 TTGATTTTGA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:75355957 original size:19 final size:19
Alignment explanation
Indices: 75355887--75355957 Score: 101
Period size: 19 Copynumber: 3.8 Consensus size: 19
75355877 TTACCTGATA
75355887 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
*
75355906 CTAATTCTGATTCTGGTT--
1 CTGATTCTGATTCT-GTTAC
75355924 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
*
75355943 CTGATACTGATTCTG
1 CTGATTCTGATTCTG
75355958 ATTCTGTTAC
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
17 3 0.07
18 13 0.28
19 27 0.59
20 3 0.07
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (19 bp):
CTGATTCTGATTCTGTTAC
Found at i:75355957 original size:62 final size:62
Alignment explanation
Indices: 75355860--75356051 Score: 253
Period size: 62 Copynumber: 3.1 Consensus size: 62
75355850 TGCATTCACA
*
75355860 TTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
* *
75355922 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTTTGA
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
* * * ** * * * *
75355984 TTTTGATTTTGATTCTGTCACCTGATTTTGATTTTGATTCTGATT--CTCATTTTGATTCTAG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTG-TTACCTAATTCTGATTCTGG
75356045 TTCTGAT
1 TTCTGAT
75356052 AATGTTTCTT
Statistics
Matches: 114, Mismatches: 15, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
61 17 0.15
62 95 0.83
63 2 0.02
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.51
Consensus pattern (62 bp):
TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
Found at i:75355974 original size:19 final size:19
Alignment explanation
Indices: 75355890--75355979 Score: 94
Period size: 19 Copynumber: 4.5 Consensus size: 19
75355880 CCTGATACTG
75355890 ATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGTTACCTA
*
75355909 ATTCTGATTCTGGTT--CTG
1 ATTCTGATTCT-GTTACCTA
75355927 ATTCTGATTCTGTTACCTGATA
1 ATTCTGATTCTGTTACC---TA
75355949 CTGATTCTGATTCTGTTACCTA
1 ---ATTCTGATTCTGTTACCTA
75355971 ATTCTGATT
1 ATTCTGATT
75355980 TTGATTTTGA
Statistics
Matches: 60, Mismatches: 2, Indels: 18
0.75 0.03 0.22
Matches are distributed among these distances:
17 3 0.05
18 13 0.22
19 21 0.35
20 3 0.05
22 3 0.05
25 17 0.28
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (19 bp):
ATTCTGATTCTGTTACCTA
Found at i:75355991 original size:37 final size:37
Alignment explanation
Indices: 75355944--75356030 Score: 120
Period size: 37 Copynumber: 2.4 Consensus size: 37
75355934 TTCTGTTACC
* *
75355944 TGATACTGATTCTGATTCTGTTACCTAATTCTGATTT
1 TGATTCTGATTCTGATTCTGTCACCTAATTCTGATTT
* * * *
75355981 TGATTTTGATTTTGATTCTGTCACCTGATTTTGATTT
1 TGATTCTGATTCTGATTCTGTCACCTAATTCTGATTT
75356018 TGATTCTGATTCT
1 TGATTCTGATTCT
75356031 CATTTTGATT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.18, C:0.14, G:0.15, T:0.53
Consensus pattern (37 bp):
TGATTCTGATTCTGATTCTGTCACCTAATTCTGATTT
Found at i:75358019 original size:27 final size:27
Alignment explanation
Indices: 75357997--75358286 Score: 307
Period size: 27 Copynumber: 10.7 Consensus size: 27
75357987 TTAGTTTACC
*
75357997 AAATTACCAAAATACCCCTAGTTTTTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * *
75358024 AAATTACTAAAATACCCTTAGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * *
75358051 AAATCACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * *
75358078 AAATTACCAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
75358105 AAATTACGAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
75358132 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
75358159 AAATTACCAAAATACCCCTAGTTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTA
*
75358186 AAATTACCAAAATACCCCT-GATTTGTG
1 AAATTACCAAAATACCCCTAG-TTTGTA
** * **
75358213 AAATTACTGAAATA-CCCTTGACCTGTA
1 AAATTACCAAAATACCCCTAG-TTTGTA
*** * *
75358240 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCTAG-TTTGTA
*
75358267 AAATTACCAAAGTACCCCTA
1 AAATTACCAAAATACCCCTA
75358287 ATTTACAGAA
Statistics
Matches: 232, Mismatches: 28, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
26 5 0.02
27 223 0.96
28 4 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:75358355 original size:27 final size:27
Alignment explanation
Indices: 75358325--75358486 Score: 236
Period size: 27 Copynumber: 6.0 Consensus size: 27
75358315 TTTACAAAAT
*
75358325 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
75358352 TACCGAAATACCCCTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
75358379 TACCGAAATACCCCTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
* *
75358406 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
** *
75358433 TACTAAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
* * *
75358460 TACCGAGATACCCTTGTATGGTA-AAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
75358486 T
1 T
75358487 TACCATTTTC
Statistics
Matches: 125, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
26 3 0.02
27 122 0.98
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (27 bp):
TACCGAAATACCCCTGTAGGGTAGAAA
Found at i:75358778 original size:27 final size:26
Alignment explanation
Indices: 75358734--75358784 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
75358724 CTCGCTGTAA
*
75358734 TCTGGTGGCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
75358761 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
75358785 GGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:75359027 original size:6 final size:6
Alignment explanation
Indices: 75359018--75359210 Score: 110
Period size: 6 Copynumber: 31.3 Consensus size: 6
75359008 TTGCATTCAC
* *
75359018 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * * * *
75359068 ATTTTG ATTCTG GTTCTA ATTCTG ATTCTG -TTACCTG ATACTT ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * *
75359117 ATTCTG -TTAACTA ATTCTG ATTCTG ATTCTG ATTTTG ATTTTG -TCACCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * *
75359167 ATTTTC ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
75359211 AATGTTTCTT
Statistics
Matches: 142, Mismatches: 28, Indels: 34
0.70 0.14 0.17
Matches are distributed among these distances:
5 10 0.07
6 112 0.79
7 13 0.09
8 7 0.05
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:75359049 original size:25 final size:25
Alignment explanation
Indices: 75359021--75359147 Score: 93
Period size: 25 Copynumber: 5.6 Consensus size: 25
75359011 CATTCACATT
*
75359021 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
75359046 CTGATTCTGATTCTGTTACCT-A-A
1 CTGATTCTGATTCTGTTACCTAATA
*
75359069 -T--TT-TGATTCTGGTT--CTAATT
1 CTGATTCTGATTCT-GTTACCTAATA
*
75359089 CTGATTCTG-T-----TACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
* * *
75359108 CTTATTCTGATTCTGTTAACTAATT
1 CTGATTCTGATTCTGTTACCTAATA
75359133 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
75359148 ATTTTGATTT
Statistics
Matches: 79, Mismatches: 8, Indels: 30
0.68 0.07 0.26
Matches are distributed among these distances:
17 1 0.01
18 2 0.03
19 20 0.25
20 6 0.08
21 1 0.01
22 1 0.01
23 4 0.05
24 3 0.04
25 41 0.52
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:75359115 original size:37 final size:37
Alignment explanation
Indices: 75359040--75359121 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 37
75359030 ATTCTGTTAC
* * *
75359040 CTGATACTGATTCTGATTCTGTTACCTAATTTTGATT
1 CTGATTCTAATTCTGATTCTGTTACCTAATCTTGATT
* *
75359077 CTGGTTCTAATTCTGATTCTGTTACCTGATACTT-ATT
1 CTGATTCTAATTCTGATTCTGTTACCTAAT-CTTGATT
75359114 CTGATTCT
1 CTGATTCT
75359122 GTTAACTAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (37 bp):
CTGATTCTAATTCTGATTCTGTTACCTAATCTTGATT
Found at i:75359121 original size:62 final size:61
Alignment explanation
Indices: 75359019--75359210 Score: 244
Period size: 62 Copynumber: 3.1 Consensus size: 61
75359009 TGCATTCACA
*
75359019 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTTTGATTCTGG
1 TTCTGATTCTGATTCTGTTACCTGATACTTATTCTGATTCTGTTA-CTAATTTTGATTCTGG
* * *
75359081 TTCTAATTCTGATTCTGTTACCTGATACTTATTCTGATTCTGTTAACTAATTCTGATTCTGA
1 TTCTGATTCTGATTCTGTTACCTGATACTTATTCTGATTCTGTT-ACTAATTTTGATTCTGG
* * * * * *
75359143 TTCTGATTTTGATTTTGTCACCTGAT-TTTCATTCTGATTCTGATT-CTCATTTTGATTCTAG
1 TTCTGATTCTGATTCTGTTACCTGATACTT-ATTCTGATTCTG-TTACTAATTTTGATTCTGG
75359204 TTCTGAT
1 TTCTGAT
75359211 AATGTTTCTT
Statistics
Matches: 114, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
61 21 0.18
62 90 0.79
63 3 0.03
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.51
Consensus pattern (61 bp):
TTCTGATTCTGATTCTGTTACCTGATACTTATTCTGATTCTGTTACTAATTTTGATTCTGG
Found at i:75359156 original size:37 final size:37
Alignment explanation
Indices: 75359115--75359187 Score: 92
Period size: 37 Copynumber: 2.0 Consensus size: 37
75359105 ATACTTATTC
* *
75359115 TGATTCTGTTAACTAATTCTGATTCTGATTCTGATTT
1 TGATTCTGTCAACTAATTCTCATTCTGATTCTGATTT
* * * *
75359152 TGATTTTGTCACCTGATTTTCATTCTGATTCTGATT
1 TGATTCTGTCAACTAATTCTCATTCTGATTCTGATT
75359188 CTCATTTTGA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.19, C:0.15, G:0.14, T:0.52
Consensus pattern (37 bp):
TGATTCTGTCAACTAATTCTCATTCTGATTCTGATTT
Found at i:75359207 original size:18 final size:18
Alignment explanation
Indices: 75359018--75359201 Score: 64
Period size: 19 Copynumber: 10.3 Consensus size: 18
75359008 TTGCATTCAC
*
75359018 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTCATTCTG
* *
75359036 -TTACCTGATACTGATTCTG
1 ATT--CTGATTCTCATTCTG
* *
75359055 ATTCTG-TTACCTAATTTTG
1 ATTCTGATT--CTCATTCTG
* *
75359074 ATTCTGGTTCTAATTCTG
1 ATTCTGATTCTCATTCTG
* * *
75359092 ATTCTG-TTACCTGATACTT
1 ATTCTGATT--CTCATTCTG
* *
75359111 ATTCTGATTCT-GTTAACTA
1 ATTCTGATTCTCATT--CTG
*
75359130 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTCATTCTG
*
75359148 ATTTTGATT-T--TGTC--
1 ATTCTGATTCTCAT-TCTG
* *
75359162 A-CCTGATTTTCATTCTG
1 ATTCTGATTCTCATTCTG
*
75359179 ATTCTGATTCTCATTTTG
1 ATTCTGATTCTCATTCTG
75359197 ATTCT
1 ATTCT
75359202 AGTTCTGATA
Statistics
Matches: 128, Mismatches: 19, Indels: 38
0.69 0.10 0.21
Matches are distributed among these distances:
13 5 0.04
14 2 0.02
15 3 0.02
16 3 0.02
17 8 0.06
18 47 0.37
19 52 0.41
20 8 0.06
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (18 bp):
ATTCTGATTCTCATTCTG
Found at i:75366760 original size:13 final size:13
Alignment explanation
Indices: 75366742--75366766 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75366732 CCAAGCAGAC
75366742 ACCCGTGTCCTTA
1 ACCCGTGTCCTTA
75366755 ACCCGTGTCCTT
1 ACCCGTGTCCTT
75366767 CACATGGTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.40, G:0.16, T:0.32
Consensus pattern (13 bp):
ACCCGTGTCCTTA
Found at i:75372665 original size:43 final size:43
Alignment explanation
Indices: 75372541--75372701 Score: 152
Period size: 43 Copynumber: 3.7 Consensus size: 43
75372531 GGAAAGCTCG
* * * *
75372541 TACAATGCAAACGTCCCAGACGTGGTCTTACATGT-AATCAAA
1 TACAATGCCAATGTCCCAAACGTGGTCTTACACGTAAATCAAA
** *
75372583 TATTGATGCCACTGTCCCAGATA-G-GGTCTTACACG-AAATCAAA
1 TA-CAATGCCAATGTCCCA-A-ACGTGGTCTTACACGTAAATCAAA
75372626 TACAATGCCAATGTCCCAAACGTGGTCTTACACGTAAATCATAA
1 TACAATGCCAATGTCCCAAACGTGGTCTTACACGTAAATCA-AA
* * *
75372670 GT-CGATGCCAATGTCCCAAACATGGTGTTACA
1 -TACAATGCCAATGTCCCAAACGTGGTCTTACA
75372702 TGATAACACA
Statistics
Matches: 97, Mismatches: 13, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
40 1 0.01
41 2 0.02
42 26 0.27
43 36 0.37
44 30 0.31
45 2 0.02
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (43 bp):
TACAATGCCAATGTCCCAAACGTGGTCTTACACGTAAATCAAA
Found at i:75372685 original size:44 final size:42
Alignment explanation
Indices: 75372553--75372701 Score: 144
Period size: 44 Copynumber: 3.5 Consensus size: 42
75372543 CAATGCAAAC
* * * *
75372553 GTCCCAGACGTGGTCTTACATGT-AATCAAATATTGATGCCACT
1 GTCCCAAACGTGGTCTTACACGTAAATC-AA-ATCGATGCCAAT
*
75372596 GTCCCAGATA-G-GGTCTTACACG-AAATCAAATACAATGCCAAT
1 GTCCCA-A-ACGTGGTCTTACACGTAAATCAAAT-CGATGCCAAT
75372638 GTCCCAAACGTGGTCTTACACGTAAATCATAAGTCGATGCCAAT
1 GTCCCAAACGTGGTCTTACACGTAAATCA-AA-TCGATGCCAAT
* *
75372682 GTCCCAAACATGGTGTTACA
1 GTCCCAAACGTGGTCTTACA
75372702 TGATAACACA
Statistics
Matches: 89, Mismatches: 8, Indels: 17
0.78 0.07 0.15
Matches are distributed among these distances:
40 1 0.01
41 4 0.04
42 26 0.29
43 26 0.29
44 30 0.34
45 2 0.02
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (42 bp):
GTCCCAAACGTGGTCTTACACGTAAATCAAATCGATGCCAAT
Found at i:75375963 original size:14 final size:15
Alignment explanation
Indices: 75375944--75375999 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
75375934 AATCTTCAAT
75375944 GATATG-CAATCTTA
1 GATATGACAATCTTA
75375958 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
75375975 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
75375993 GATATGA
1 GATATGA
75376000 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:75375988 original size:35 final size:37
Alignment explanation
Indices: 75375942--75376020 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
75375932 ATAATCTTCA
75375942 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
75375978 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATA-GCAATCTTAGAT
75376014 A-GATATG
1 ATGATATG
75376021 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
Found at i:75376020 original size:17 final size:19
Alignment explanation
Indices: 75375942--75376013 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
75375932 ATAATCTTCA
75375942 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
75375961 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
75375978 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
75375996 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
75376014 AGATATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:75376039 original size:22 final size:22
Alignment explanation
Indices: 75375942--75376036 Score: 79
Period size: 17 Copynumber: 4.8 Consensus size: 22
75375932 ATAATCTTCA
75375942 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
75375961 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
75375978 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
75375996 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
75376018 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
75376037 GATTTAATTT
Statistics
Matches: 67, Mismatches: 2, Indels: 10
0.85 0.03 0.13
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 15 0.22
22 8 0.12
23 12 0.18
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:75376326 original size:18 final size:19
Alignment explanation
Indices: 75376303--75376339 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
75376293 TTTTTCCCTG
*
75376303 ATTTTTTTATAT-ATTTTA
1 ATTTTTTTAAATAATTTTA
75376321 ATTTTTTTAAATAATTTTA
1 ATTTTTTTAAATAATTTTA
75376340 GTATCATATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
ATTTTTTTAAATAATTTTA
Found at i:75387752 original size:29 final size:29
Alignment explanation
Indices: 75387713--75387791 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
75387703 CTTAATAATC
*
75387713 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
75387743 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
75387772 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
75387792 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:75389898 original size:120 final size:120
Alignment explanation
Indices: 75389685--75389935 Score: 466
Period size: 120 Copynumber: 2.1 Consensus size: 120
75389675 TCAAAGACAT
*
75389685 AGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAGGATGATTTGGCATCCTTGCGT
1 AGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGT
75389750 TGACAAGGAGCAAATCGAAGACATAGTAGATTTGGCTTTCACGTGTTTACGCTGA
66 TGACAAGGAGCAAATCGAAGACATAGTAGATTTGGCTTTCACGTGTTTACGCTGA
*
75389805 AGCAGATCTAACCTTTGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGT
1 AGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGT
* *
75389870 TGACAAGGAGCAGATCGAAGACATAGTAGATTTGGCTTTCACGTGTTTACGCTGT
66 TGACAAGGAGCAAATCGAAGACATAGTAGATTTGGCTTTCACGTGTTTACGCTGA
75389925 AGCAGATCTAA
1 AGCAGATCTAA
75389936 GATGATTTGG
Statistics
Matches: 127, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 127 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (120 bp):
AGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGT
TGACAAGGAGCAAATCGAAGACATAGTAGATTTGGCTTTCACGTGTTTACGCTGA
Found at i:75390111 original size:78 final size:78
Alignment explanation
Indices: 75390018--75390276 Score: 412
Period size: 78 Copynumber: 3.3 Consensus size: 78
75390008 GACCACATCA
* *
75390018 AAGACATAGCAGATCTAACCTTCATTGAAGCAAATCCAAGATGATTTGGCATCTCTGTATTAGAC
1 AAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGAC
75390083 GGGGAGTAGATCG
66 GGGGAGTAGATCG
* *
75390096 AAGACACAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGAT
1 AAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGAC
75390161 GGGGAGTAGATCG
66 GGGGAGTAGATCG
* * * *
75390174 AAGACATAACAAAT-TGGACCTTCACTGAAGCAGATCCAAGATGATTTGGCATCTTTGTATTAGA
1 AAGACATAGCAGATCT-GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGA
* *
75390238 CGGGGAGCAGATCA
65 CGGGGAGTAGATCG
75390252 AAGACATAGCAGATCTGACCTTCAT
1 AAGACATAGCAGATCTGACCTTCAT
75390277 GTGTTTACAT
Statistics
Matches: 164, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
77 1 0.01
78 162 0.99
79 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (78 bp):
AAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGAC
GGGGAGTAGATCG
Found at i:75390422 original size:45 final size:45
Alignment explanation
Indices: 75390364--75390457 Score: 143
Period size: 45 Copynumber: 2.1 Consensus size: 45
75390354 TTGAAGAAGT
* * *
75390364 AGATTTGGCGTCTCTGTATTATACGGGGAGTAGATCGAAGATAAC
1 AGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAAC
* *
75390409 AGATTTGGTGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGC
1 AGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAAC
75390454 AGAT
1 AGAT
75390458 ATCGCCTTCC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.28
Consensus pattern (45 bp):
AGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAAC
Found at i:75390831 original size:19 final size:19
Alignment explanation
Indices: 75390807--75390860 Score: 94
Period size: 17 Copynumber: 2.9 Consensus size: 19
75390797 ATAATCTTCA
75390807 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
75390826 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
75390843 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
75390861 AGATATGATT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
17 17 0.52
19 16 0.48
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:75390850 original size:22 final size:19
Alignment explanation
Indices: 75390822--75390869 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
75390812 ATGCAATCTT
75390822 AGATATGATACAATCTTAGA
1 AGATATGAT-CAATCTTAGA
75390842 TATGATATG--CAATCTTAGA
1 -A-GATATGATCAATCTTAGA
75390861 AGATATGAT
1 AGATATGAT
75390870 TTTGTAATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
17 6 0.25
18 1 0.04
19 10 0.42
21 1 0.04
22 6 0.25
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.33
Consensus pattern (19 bp):
AGATATGATCAATCTTAGA
Found at i:75390886 original size:22 final size:22
Alignment explanation
Indices: 75390807--75390883 Score: 71
Period size: 17 Copynumber: 3.8 Consensus size: 22
75390797 ATAATCTTCA
75390807 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
75390826 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
75390843 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
75390865 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
75390884 GATTTAATTT
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
17 17 0.34
19 13 0.26
22 8 0.16
23 12 0.24
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:75393086 original size:20 final size:20
Alignment explanation
Indices: 75393061--75393100 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
75393051 AACTTATCCT
75393061 AAAATAACGATCACACTTAG
1 AAAATAACGATCACACTTAG
75393081 AAAATAACGATCACACTTAG
1 AAAATAACGATCACACTTAG
75393101 CATTGAATGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.20, G:0.10, T:0.20
Consensus pattern (20 bp):
AAAATAACGATCACACTTAG
Done.