Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 229 of 333
Found at i:75403089 original size:26 final size:26
Alignment explanation
Indices: 75403053--75403108 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
75403043 GGGTACAGGA
* *
75403053 TATCTCATCAAACATACGGATAGTAT
1 TATCTCATCAAACACACGAATAGTAT
75403079 TATCTCATCAAACACACGAATAGTAT
1 TATCTCATCAAACACACGAATAGTAT
75403105 TATC
1 TATC
75403109 AAGCTAGAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (26 bp):
TATCTCATCAAACACACGAATAGTAT
Found at i:75404455 original size:20 final size:20
Alignment explanation
Indices: 75404430--75404484 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
75404420 TGTCCTAAAA
*
75404430 TAACGACCACACTTAGAAAC
1 TAACGATCACACTTAGAAAC
75404450 TAACGATCACACTTAGAAAC
1 TAACGATCACACTTAGAAAC
75404470 TAACGATCACACTTA
1 TAACGATCACACTTA
75404485 ACATTGAATG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.44, C:0.27, G:0.09, T:0.20
Consensus pattern (20 bp):
TAACGATCACACTTAGAAAC
Found at i:75410094 original size:47 final size:47
Alignment explanation
Indices: 75410037--75410340 Score: 407
Period size: 47 Copynumber: 6.4 Consensus size: 47
75410027 ATTGATGTAC
* * *
75410037 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
75410084 AAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
75410133 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
75410180 ACA-TGTGTATGTGTGATAAGGCCAAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
75410227 ACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGAGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
75410274 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGG
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
75410321 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
75410341 TCCCGAAGGG
Statistics
Matches: 235, Mismatches: 18, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
46 1 0.00
47 193 0.82
49 40 0.17
50 1 0.00
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:75410218 original size:22 final size:22
Alignment explanation
Indices: 75410191--75410312 Score: 57
Period size: 22 Copynumber: 5.3 Consensus size: 22
75410181 CATGTGTATG
75410191 TGTGATAAGGCCAAATGGCCAA
1 TGTGATAAGGCCAAATGGCCAA
* ** *
75410213 TGTGATGAATGTGAACAT-GCATATA
1 TGTGAT-AAGGCCAA-ATGGC-CA-A
* *
75410238 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCAAATGGCCAA
* ** ***
75410260 TGTGATGAATGAGAAAGTGTATATA
1 TGTGAT-AAGGCCAAA-TGGCCA-A
*
75410285 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCAAATGGCCAA
75410307 TGTGAT
1 TGTGAT
75410313 GGATGTGGAA
Statistics
Matches: 67, Mismatches: 25, Indels: 16
0.62 0.23 0.15
Matches are distributed among these distances:
22 19 0.28
23 18 0.27
24 17 0.25
25 13 0.19
ACGTcount: A:0.35, C:0.11, G:0.29, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCAAATGGCCAA
Found at i:75413001 original size:22 final size:22
Alignment explanation
Indices: 75412976--75413046 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 22
75412966 TAGTTGGTAG
75412976 CATTTAACACCTCAAATTACAA
1 CATTTAACACCTCAAATTACAA
* * * *
75412998 CATTTAA-ACATAATAATTTGCAG
1 CATTTAACACCTCA-AA-TTACAA
*
75413021 CATTTAACAACTCAAATTACAA
1 CATTTAACACCTCAAATTACAA
75413043 CATT
1 CATT
75413047 CATGTACTAC
Statistics
Matches: 37, Mismatches: 9, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
21 4 0.11
22 17 0.46
23 13 0.35
24 3 0.08
ACGTcount: A:0.45, C:0.21, G:0.03, T:0.31
Consensus pattern (22 bp):
CATTTAACACCTCAAATTACAA
Found at i:75414817 original size:46 final size:46
Alignment explanation
Indices: 75414747--75414925 Score: 193
Period size: 46 Copynumber: 3.9 Consensus size: 46
75414737 GGATATTTGG
*
75414747 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * * *
75414793 GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA
* * *
75414839 GGCATCCAAAATTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 -GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * * *
75414886 ACACCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75414926 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 65 0.61
47 30 0.28
48 2 0.02
50 4 0.04
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:75417654 original size:55 final size:53
Alignment explanation
Indices: 75417567--75417821 Score: 240
Period size: 55 Copynumber: 4.8 Consensus size: 53
75417557 ATTAGAGTTT
*
75417567 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCTAAGGC
* * * * * * *
75417622 CAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGGC
* * *
75417677 AAAGG-TCCCATGTAAGACCATGCCAAGGA-ATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAA-GACATGGAATTGGTAAGTTTC-TAAGGC
*
75417730 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAGTTTCTAAGGC
* *
75417779 AAGGATACCATGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAG
75417822 GTACCCGTGT
Statistics
Matches: 169, Mismatches: 22, Indels: 24
0.79 0.10 0.11
Matches are distributed among these distances:
49 41 0.24
52 9 0.05
53 38 0.22
54 12 0.07
55 64 0.38
56 5 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
Found at i:75417773 original size:108 final size:110
Alignment explanation
Indices: 75417574--75417774 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
75417564 TTTAAGGATA
* * *
75417574 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCCAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGAATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
75417639 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
75417684 CCATGTAAGACCATGCCAAGGAATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGAATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
75417746 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
75417775 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.09
110 25 0.30
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGAATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:75417817 original size:108 final size:106
Alignment explanation
Indices: 75417567--75417817 Score: 241
Period size: 108 Copynumber: 2.3 Consensus size: 106
75417557 ATTAGAGTTT
*
75417567 AAGGATACCATGTAAGACCATGCCAAGGCATGGAA---ATTGGTAAGGTTTCTAAGGCCAGGAAA
1 AAGGATACCATGTAAGACCATG-CAA-GCATGGAATGGATTGGTAAGGTTTCTAAGGCAAGGAAA
* * *
75417629 TCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTAT
64 CCATGTAAGACCATGTCAAGACATGGCAATGATAAGTTACTAA
* * *
75417672 AAGGCAAAGGTCCCATGTAAGACCATGC---CAAGGAATGGCATTGGTGA-G-TTCATAAGGCAA
1 AAGG---A--TACCATGTAAGACCATGCAAGCATGGAATGG-ATTGGTAAGGTTTC-TAAGGCAA
* * *
75417732 GGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTC-AA
59 GGAAACCATGTAAGACCATGTCAAGACATGGCAATGATAAGTTACTAA
75417779 AAGGATACCATGTAAGACCATGACAAGTCATGGCAATGG
1 AAGGATACCATGTAAGACCATG-CAAG-CATGG-AATGG
75417818 TAAGGTACCC
Statistics
Matches: 118, Mismatches: 12, Indels: 29
0.74 0.08 0.18
Matches are distributed among these distances:
102 16 0.14
103 1 0.01
104 1 0.01
105 10 0.08
107 12 0.10
108 54 0.46
109 8 0.07
110 16 0.14
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (106 bp):
AAGGATACCATGTAAGACCATGCAAGCATGGAATGGATTGGTAAGGTTTCTAAGGCAAGGAAACC
ATGTAAGACCATGTCAAGACATGGCAATGATAAGTTACTAA
Found at i:75439693 original size:47 final size:47
Alignment explanation
Indices: 75439642--75439746 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
75439632 TAGTATTAAT
*
75439642 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
75439689 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
75439736 AATGTGATAAG
1 TATGTGATAAG
75439747 TCCCGAAGGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:75444326 original size:3 final size:3
Alignment explanation
Indices: 75444318--75444348 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
75444308 GCATACTTTA
75444318 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
75444349 TTGGTGGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:75446733 original size:33 final size:33
Alignment explanation
Indices: 75446696--75446771 Score: 89
Period size: 33 Copynumber: 2.3 Consensus size: 33
75446686 ATTCTTTATT
* *
75446696 TACTGTCCCAACAGACTATCTTTGTTCTGTGTC
1 TACTGTCCCAACAGACTAACTCTGTTCTGTGTC
** * *
75446729 TACTGTCCCAATGGACTAACTCTGTTTTGTGTT
1 TACTGTCCCAACAGACTAACTCTGTTCTGTGTC
*
75446762 TACTATCCCA
1 TACTGTCCCA
75446772 GTGGATTATC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.20, C:0.26, G:0.14, T:0.39
Consensus pattern (33 bp):
TACTGTCCCAACAGACTAACTCTGTTCTGTGTC
Found at i:75454310 original size:19 final size:19
Alignment explanation
Indices: 75454286--75454323 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
75454276 ATAGTTACCT
75454286 TAAAATAGAATGAATGGTA
1 TAAAATAGAATGAATGGTA
75454305 TAAAATAGAATGAATGGTA
1 TAAAATAGAATGAATGGTA
75454324 AGTTAAGTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.21, T:0.26
Consensus pattern (19 bp):
TAAAATAGAATGAATGGTA
Found at i:75455206 original size:22 final size:22
Alignment explanation
Indices: 75455181--75455229 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
75455171 GGTCACAAGG
75455181 GCGTGGCCATTAGACCACACGA
1 GCGTGGCCATTAGACCACACGA
* *
75455203 GCGTGGCCATTGGACCACACGG
1 GCGTGGCCATTAGACCACACGA
75455225 GCGTG
1 GCGTG
75455230 TGAGCCCTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.20, C:0.31, G:0.35, T:0.14
Consensus pattern (22 bp):
GCGTGGCCATTAGACCACACGA
Found at i:75457985 original size:49 final size:49
Alignment explanation
Indices: 75457909--75458096 Score: 223
Period size: 49 Copynumber: 3.8 Consensus size: 49
75457899 TAGTCGAAAC
* *
75457909 TATCTGGTACGCATAGTAGCCTGCACTTAGCACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * * * *
75457958 AATCTGGTACACGTAGTAGCTTACACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * *
75458009 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* **
75458058 TATCCGGTACATGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
75458097 CGTGACCTCA
Statistics
Matches: 113, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
49 73 0.65
50 2 0.02
51 38 0.34
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:75458030 original size:100 final size:100
Alignment explanation
Indices: 75457914--75458101 Score: 322
Period size: 100 Copynumber: 1.9 Consensus size: 100
75457904 GAAACTATCT
* *
75457914 GGTACGCATAGTAGCCTGCACTTAGCACTACACATGCGACCAATAATCTGGTACACGTAGTAGCT
1 GGTACGCATAGTAGCCTGCACTTAGCACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
75457979 TACACTTAGTACTACACACGTGATCACAGTTTTCG
66 TACACTTAGTACTACACACGTGATCACAGTTTTCG
* * *
75458014 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGCACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
*
75458079 TGCACTTAGTACTACACACGTGA
66 TACACTTAGTACTACACACGTGA
75458102 CCTCACAATA
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGCACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
TACACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:75460224 original size:28 final size:28
Alignment explanation
Indices: 75460107--75460227 Score: 120
Period size: 29 Copynumber: 4.2 Consensus size: 28
75460097 TGACCTTCTA
* *
75460107 GGCCCAATCTCATTTATATGGCCCATCC
1 GGCCCAATCTCATTCATATGGCCCATCT
* *
75460135 GACCCAAT-TCACGTTCATATGGCCCATCA
1 GGCCCAATCTCA--TTCATATGGCCCATCT
* * *
75460164 AGCCTAATTCACATTCATATGGCCCAT-T
1 GGCCCAA-TCTCATTCATATGGCCCATCT
*
75460192 AGGCCCAATCTCATTTATATGGCCCATCT
1 -GGCCCAATCTCATTCATATGGCCCATCT
75460221 GGCCCAA
1 GGCCCAA
75460228 ATCACATTAT
Statistics
Matches: 75, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
27 3 0.04
28 31 0.41
29 38 0.51
30 1 0.01
31 2 0.03
ACGTcount: A:0.26, C:0.33, G:0.14, T:0.27
Consensus pattern (28 bp):
GGCCCAATCTCATTCATATGGCCCATCT
Found at i:75460482 original size:16 final size:16
Alignment explanation
Indices: 75460451--75460509 Score: 66
Period size: 16 Copynumber: 3.7 Consensus size: 16
75460441 GTAGCCAAAC
* *
75460451 TTTCTGCTTTTCGGCA
1 TTTCAGCTTTTTGGCA
75460467 TTTCAG-TATTTTGGCA
1 TTTCAGCT-TTTTGGCA
*
75460483 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTTGGCA
*
75460499 TTTCGGCTTTT
1 TTTCAGCTTTT
75460510 GCCAATCTAC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
15 1 0.03
16 35 0.95
17 1 0.03
ACGTcount: A:0.10, C:0.20, G:0.19, T:0.51
Consensus pattern (16 bp):
TTTCAGCTTTTTGGCA
Found at i:75463383 original size:46 final size:46
Alignment explanation
Indices: 75463327--75463496 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
75463317 TGGTTGAGCA
75463327 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* * *
75463373 TCCGAACTCGTTGAGTTGACTCCGAGTT---C-GTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATG-GATGCGAA-T--G
* * *
75463418 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATTGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* *
75463466 -CTCGAGCTCGTTGAGTTGAGTCTGAGTTCAC
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCAC
75463497 TTAGGGGCGG
Statistics
Matches: 101, Mismatches: 11, Indels: 24
0.74 0.08 0.18
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
45 2 0.02
46 54 0.53
47 27 0.27
48 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
Found at i:75463483 original size:93 final size:93
Alignment explanation
Indices: 75463324--75463494 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
75463314 GGATGGTTGA
*
75463324 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAGT
75463389 TGACTCCGAGTTCGTGAGATGTAACTAG
66 TGACTCCGAGTTCGTGAGATGTAACTAG
* * *
75463417 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATTGATGCGAACG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTC-CGAACTCGTTGAG
* *
75463481 TTGAGTCTGAGTTC
65 TTGACTCCGAGTTC
75463495 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAGT
TGACTCCGAGTTCGTGAGATGTAACTAG
Found at i:75476771 original size:42 final size:42
Alignment explanation
Indices: 75476677--75476757 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
75476667 TAGAGACACA
*
75476677 AGCATGTGTCTCAGCCATGTGTGCTACACAGCCTAGAACATG
1 AGCAAGTGTCTCAGCCATGTGTGCTACACAGCCTAGAACATG
** * * *
75476719 AGCGTGTGTCTCAGTCGTGTGTGCTACACGGCCTAGAAC
1 AGCAAGTGTCTCAGCCATGTGTGCTACACAGCCTAGAAC
75476758 GCAGGCAAGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (42 bp):
AGCAAGTGTCTCAGCCATGTGTGCTACACAGCCTAGAACATG
Found at i:75484822 original size:27 final size:27
Alignment explanation
Indices: 75484792--75485018 Score: 208
Period size: 27 Copynumber: 8.4 Consensus size: 27
75484782 TTAGTTTACC
*
75484792 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
75484819 AAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
75484846 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
75484873 AAATTACGAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
75484900 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
75484927 AAATTACCGAAATA-CCCTCAGTTTGCA
1 AAATTACCAAAATACCCCT-GGTTTGTA
** *
75484954 AAATTACTGAAATA-CCCTCGATTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*** **
75484981 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
75485008 AAATTACCAAA
1 AAATTACCAAA
75485019 GTACTCCCGA
Statistics
Matches: 168, Mismatches: 31, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 4 0.02
27 164 0.98
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:75484857 original size:54 final size:54
Alignment explanation
Indices: 75484782--75484986 Score: 270
Period size: 54 Copynumber: 3.8 Consensus size: 54
75484772 TTAGAATACT
* * *
75484782 TTAGTTTACCAAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
1 TTAGTTTACAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCC
*
75484836 TTAGTTTACAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACGAAAATACCC
1 TTAGTTTACAAAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCC
* * * *
75484890 TTGGTTTATAAAATTACCAAAATACCCCTGATTTGTGAAATTACCGAAATACCC
1 TTAGTTTACAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCC
* * **
75484944 TCAGTTTGCAAAATTACTGAAATA-CCCTCGATTTGTAAAATTA
1 TTAGTTTACAAAATTACCAAAATACCCCT-GATTTGTAAAATTA
75484987 TTGAAATACC
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
53 4 0.03
54 127 0.96
55 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
TTAGTTTACAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCC
Found at i:75484931 original size:81 final size:81
Alignment explanation
Indices: 75484800--75485018 Score: 255
Period size: 81 Copynumber: 2.7 Consensus size: 81
75484790 CCAAATCACC
* * **
75484800 AAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTAGTTTACAAAATTACCAAAATACCC-C
1 AAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTGA-TTTGTAAAATTACCAAAATACCCTC
*
75484864 TAGTTTGTAAAATTAC-G
65 -AGTTTGCAAAATTACTG
* * *
75484881 AAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGATTTGTGAAATTACCGAAATACCCTC
1 AAAATACCCTTGGTTTGTAAAATTACCAAAATA-CCCTGATTTGTAAAATTACCAAAATACCCTC
75484946 AGTTTGCAAAATTACTG
65 AGTTTGCAAAATTACTG
* * *** *
75484963 -AAATACCCTCGATTTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAAA
1 AAAATACCCTTGGTTTGTAAAATTACCAAAATACCCT-GATTTGTAAAATTACCAAA
75485019 GTACTCCCGA
Statistics
Matches: 117, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
80 4 0.03
81 106 0.91
82 7 0.06
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.30
Consensus pattern (81 bp):
AAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTGATTTGTAAAATTACCAAAATACCCTCA
GTTTGCAAAATTACTG
Found at i:75484993 original size:54 final size:53
Alignment explanation
Indices: 75484784--75485042 Score: 254
Period size: 54 Copynumber: 4.8 Consensus size: 53
75484774 AGAATACTTT
* * * * *
75484784 AGTTTACCAAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTT
1 AGTTTACAAAATTACCAAAATACCCC-GATTTGTAAAATTACCGAAATACCCTC
* *
75484838 AGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTA-CGAAAATACCCTT
1 AGTTTACAAAATTACCAAAATACCCCGA-TTTGTAAAATTACCG-AAATACCCTC
* * *
75484892 GGTTTATAAAATTACCAAAATACCCCTGATTTGTGAAATTACCGAAATACCCTC
1 AGTTTACAAAATTACCAAAATACCCC-GATTTGTAAAATTACCGAAATACCCTC
* ** **
75484946 AGTTTGCAAAATTACTGAAATACCCTCGATTTGTAAAATTATTGAAATACCCTC
1 AGTTTACAAAATTACCAAAATACCC-CGATTTGTAAAATTACCGAAATACCCTC
* * * *
75485000 GACTTGT--AAAATTACCAAAGTACTCCCGATTTATAGAATTACC
1 -AGTT-TACAAAATTACCAAAATAC-CCCGATTTGTAAAATTACC
75485043 ATTTTACCCT
Statistics
Matches: 171, Mismatches: 26, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
53 1 0.01
54 160 0.94
55 9 0.05
56 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.30
Consensus pattern (53 bp):
AGTTTACAAAATTACCAAAATACCCCGATTTGTAAAATTACCGAAATACCCTC
Found at i:75485366 original size:27 final size:27
Alignment explanation
Indices: 75485063--75485365 Score: 432
Period size: 27 Copynumber: 11.2 Consensus size: 27
75485053 CGATTGACAA
* *
75485063 AATTATTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
75485090 AATTA-TCGAAATACCCCTGTAAGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
75485117 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
75485144 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
75485171 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
75485198 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
75485225 AATTACTGAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
75485252 AATTACTAAAATACCCCTGTAAGGTTA-
1 AATTACTGAAATACCCCTGT-AGGGTAG
75485279 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
75485306 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
75485333 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
75485360 AATTAC
1 AATTAC
75485366 CATTTTACCC
Statistics
Matches: 250, Mismatches: 20, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
26 7 0.03
27 237 0.95
28 6 0.02
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:75485633 original size:27 final size:26
Alignment explanation
Indices: 75485591--75485672 Score: 101
Period size: 27 Copynumber: 3.1 Consensus size: 26
75485581 GGAGGTAGCA
75485591 TTCTGGTGGCTATGCCACAAATATCTG
1 TTCTGGTGGCTATGCCAC-AATATCTG
*
75485618 TTCTGGTGGCTCTGCCACAATATCTG
1 TTCTGGTGGCTATGCCACAATATCTG
* * * *
75485644 TATCTGGTGACTTTGTCACAATATTTG
1 T-TCTGGTGGCTATGCCACAATATCTG
75485671 TT
1 TT
75485673 GACCGATCGA
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 10 0.20
27 39 0.80
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.39
Consensus pattern (26 bp):
TTCTGGTGGCTATGCCACAATATCTG
Found at i:75485938 original size:27 final size:27
Alignment explanation
Indices: 75485885--75485955 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
75485875 ATTCTGTTAA
* * *
75485885 GTGGCTTTGCCACATTATCTGATTCTG
1 GTGGCTCTGCCACAATACCTGATTCTG
75485912 GTGGCTCTGCCACAATACCTG-TATCTG
1 GTGGCTCTGCCACAATACCTGAT-TCTG
* *
75485939 GTGACTCTGTCACAATA
1 GTGGCTCTGCCACAATA
75485956 TCAGTTCTGG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
26 1 0.03
27 37 0.97
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (27 bp):
GTGGCTCTGCCACAATACCTGATTCTG
Found at i:75490574 original size:49 final size:48
Alignment explanation
Indices: 75490496--75490715 Score: 205
Period size: 49 Copynumber: 4.5 Consensus size: 48
75490486 TGTGTGCGCT
75490496 AGTGTAAGACCTATCTGGGACATGGCATCGGCACCGATAGATGAGAGCC
1 AGTGTAAGACCTATCTGGGACATGGCATCGGCACCGATA-ATGAGAGCC
* * * * * * *
75490545 AGTGTAAGACATGTCTGGGACACGACATCGGCTTCAAGAT-ATGCA-AGCT
1 AGTGTAAGACCTATCTGGGACATGGCATCGGC-AC-CGATAATG-AGAGCC
* * *
75490594 AGTGTAAGACCTATCTAGGACATGGCATCTGCACGGATAAGTGAGAGCC
1 AGTGTAAGACCTATCTGGGACATGGCATCGGCACCGATAA-TGAGAGCC
* * * *
75490643 AGTGTAAGACCTATCTGGGACATGGCACCGGC-CTTGATATTTG-GAAGTC
1 AGTGTAAGACCTATCTGGGACATGGCATCGGCAC-CGATA-ATGAG-AGCC
*
75490692 AGTGTAAGACCTGTCTGGGACATG
1 AGTGTAAGACCTATCTGGGACATG
75490716 ACATTGACTT
Statistics
Matches: 139, Mismatches: 23, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
47 3 0.02
48 5 0.04
49 126 0.91
50 2 0.01
51 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACCTATCTGGGACATGGCATCGGCACCGATAATGAGAGCC
Found at i:75490696 original size:98 final size:98
Alignment explanation
Indices: 75490493--75490715 Score: 281
Period size: 98 Copynumber: 2.3 Consensus size: 98
75490483 TGATGTGTGC
*
75490493 GCTAGTGTAAGACCTATCTGGGACATGGCATCGGCACCGATAGATGAGAGCCAGTGTAAGACATG
1 GCTAGTGTAAGACCTATCTGGGACATGGCATCGGCACCGATAGATGAGAGCCAGTGTAAGACATA
*
75490558 TCTGGGACACGACATCGGCTTCAAGATATGCAA
66 TCTGGGACACGACACCGGCTTCAAGATATGCAA
* * * *
75490591 GCTAGTGTAAGACCTATCTAGGACATGGCATCTGCACGGATA-AGTGAGAGCCAGTGTAAGACCT
1 GCTAGTGTAAGACCTATCTGGGACATGGCATCGGCACCGATAGA-TGAGAGCCAGTGTAAGACAT
* * * * * *
75490655 ATCTGGGACATGGCACCGGCCTT-GATATTTGGAA
65 ATCTGGGACACGACACCGG-CTTCAAGATATGCAA
*
75490689 G-TCAGTGTAAGACCTGTCTGGGACATG
1 GCT-AGTGTAAGACCTATCTGGGACATG
75490716 ACATTGACTT
Statistics
Matches: 108, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
97 2 0.02
98 103 0.95
99 3 0.03
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (98 bp):
GCTAGTGTAAGACCTATCTGGGACATGGCATCGGCACCGATAGATGAGAGCCAGTGTAAGACATA
TCTGGGACACGACACCGGCTTCAAGATATGCAA
Found at i:75498468 original size:20 final size:20
Alignment explanation
Indices: 75498443--75498481 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
75498433 TATTTCATGT
75498443 TTATTTTA-TTTTATTACTAA
1 TTATTTTACTTTT-TTACTAA
75498463 TTATTTTACTTTTTTACTA
1 TTATTTTACTTTTTTACTA
75498482 TTTTAATCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.67
Consensus pattern (20 bp):
TTATTTTACTTTTTTACTAA
Found at i:75503951 original size:86 final size:85
Alignment explanation
Indices: 75503836--75503995 Score: 211
Period size: 85 Copynumber: 1.9 Consensus size: 85
75503826 ATATGTGTTA
*
75503836 TCGTGTAAGAGCACGTCTGGGACGTTGGCATC-A-ACTTATGATTTACATGTAAGACCATGTCTA
1 TCGTGTAAGAGCACGTCTGGGACGTTGGCATCTATA-TT-TGA-TTACATGTAAGACCACGTCTA
75503899 GGACATTGGCATCGTATTTGATT
63 GGACATTGGCATCGTATTTGATT
* *
75503922 TCGTGTAAGA-CCCTGTCTGGGACAG-TGGCATCTATATTTGATTACATGTAAGACCACGTCTGG
1 TCGTGTAAGAGCAC-GTCTGGGAC-GTTGGCATCTATATTTGATTACATGTAAGACCACGTCTAG
*
75503985 GACGTTGGCAT
64 GACATTGGCAT
75503996 TGTAAGAGCT
Statistics
Matches: 66, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
85 32 0.48
86 29 0.44
87 4 0.06
88 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (85 bp):
TCGTGTAAGAGCACGTCTGGGACGTTGGCATCTATATTTGATTACATGTAAGACCACGTCTAGGA
CATTGGCATCGTATTTGATT
Found at i:75503960 original size:43 final size:41
Alignment explanation
Indices: 75503839--75503995 Score: 156
Period size: 43 Copynumber: 3.7 Consensus size: 41
75503829 TGTGTTATCG
*
75503839 TGTAAGAGCACGTCTGGGACGTTGGCATCA-ACTTATGATTTACA
1 TGTAAGA-CCCGTCTGGGACGTTGGCATCATA-TT-TGATTT-CA
* * * * *
75503883 TGTAAGACCATGTCTAGGACATTGGCATCGTATTTGATTTCG
1 TGTAAGACC-CGTCTGGGACGTTGGCATCATATTTGATTTCA
*
75503925 TGTAAGACCCTGTCTGGGACAG-TGGCATCTATATTTGATTACA
1 TGTAAGACCC-GTCTGGGAC-GTTGGCATC-ATATTTGATTTCA
75503968 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACC-CGTCTGGGACGTTGGCAT
75503996 TGTAAGAGCT
Statistics
Matches: 94, Mismatches: 12, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
42 26 0.28
43 41 0.44
44 26 0.28
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (41 bp):
TGTAAGACCCGTCTGGGACGTTGGCATCATATTTGATTTCA
Found at i:75506356 original size:44 final size:43
Alignment explanation
Indices: 75506306--75506464 Score: 164
Period size: 43 Copynumber: 3.7 Consensus size: 43
75506296 TATGTGTTAT
*
75506306 CGTGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTA
1 CGTGTAAGACCACGTCTAGGACATTGGCATCGACTT-TGATTTA
* ** *
75506350 CGTGTAAGACCACGTCTGGGATGTTCGCATCGTAC-TTGATTT-
1 CGTGTAAGACCACGTCTAGGACATTGGCATCG-ACTTTGATTTA
* * *
75506392 CGTGTAAGACC-CTGTCTAGGACAGTGGCATTGATATTTGA-TTA
1 CGTGTAAGACCAC-GTCTAGGACATTGGCATCGA-CTTTGATTTA
* *
75506435 CATGTAAGACCACGTCTAGGACGTTGGCAT
1 CGTGTAAGACCACGTCTAGGACATTGGCAT
75506465 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 13, Indels: 13
0.79 0.11 0.11
Matches are distributed among these distances:
41 2 0.02
42 26 0.27
43 35 0.36
44 31 0.32
45 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTAGGACATTGGCATCGACTTTGATTTA
Found at i:75512114 original size:28 final size:28
Alignment explanation
Indices: 75512071--75512134 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
75512061 TGGGAAGTAG
* * *
75512071 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATAGGCCATATGAACGAGA
*
75512099 TTGGGCCTGATAGGCCATGTGAACGAGA
1 TTGGGCCTGATAGGCCATATGAACGAGA
75512127 TTGGGCCT
1 TTGGGCCT
75512135 AAAGGGGCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.20, C:0.17, G:0.36, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATAGGCCATATGAACGAGA
Found at i:75512585 original size:81 final size:81
Alignment explanation
Indices: 75512463--75512629 Score: 271
Period size: 81 Copynumber: 2.1 Consensus size: 81
75512453 TTACTGAAAG
* * *
75512463 ACCCCCGATTTGTAAAATTATCAAAACACCCTCGATTTGTAAAATTACCGAAACACCCTCGATTT
1 ACCCTCGATTTGTAAAATTATCAAAACACCCTCGATTTGTAAAATTACCAAAACACCCCCGATTT
75512528 GTAAAATTATCAAAAT
66 GTAAAATTATCAAAAT
* * * *
75512544 ACCCTCGATTTGTAAAATTATCGAAATACCTTTGATTTGTAAAATTACCAAAACACCCCCGATTT
1 ACCCTCGATTTGTAAAATTATCAAAACACCCTCGATTTGTAAAATTACCAAAACACCCCCGATTT
75512609 GTAAAATTATCAAAAT
66 GTAAAATTATCAAAAT
75512625 ACCCT
1 ACCCT
75512630 TGCAGTGTAA
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.30
Consensus pattern (81 bp):
ACCCTCGATTTGTAAAATTATCAAAACACCCTCGATTTGTAAAATTACCAAAACACCCCCGATTT
GTAAAATTATCAAAAT
Found at i:75512642 original size:27 final size:27
Alignment explanation
Indices: 75512463--75512629 Score: 235
Period size: 27 Copynumber: 6.2 Consensus size: 27
75512453 TTACTGAAAG
* *
75512463 ACCCCCGATTTGTAAAATTATCAAAAC
1 ACCCTCGATTTGTAAAATTATCAAAAT
* * *
75512490 ACCCTCGATTTGTAAAATTACCGAAAC
1 ACCCTCGATTTGTAAAATTATCAAAAT
75512517 ACCCTCGATTTGTAAAATTATCAAAAT
1 ACCCTCGATTTGTAAAATTATCAAAAT
*
75512544 ACCCTCGATTTGTAAAATTATCGAAAT
1 ACCCTCGATTTGTAAAATTATCAAAAT
* * * *
75512571 ACCTTTGATTTGTAAAATTACCAAAAC
1 ACCCTCGATTTGTAAAATTATCAAAAT
*
75512598 ACCCCCGATTTGTAAAATTATCAAAAT
1 ACCCTCGATTTGTAAAATTATCAAAAT
75512625 ACCCT
1 ACCCT
75512630 TGCAGTGTAA
Statistics
Matches: 122, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 122 1.00
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.30
Consensus pattern (27 bp):
ACCCTCGATTTGTAAAATTATCAAAAT
Found at i:75512654 original size:81 final size:81
Alignment explanation
Indices: 75512496--75512654 Score: 239
Period size: 81 Copynumber: 2.0 Consensus size: 81
75512486 AAACACCCTC
* * *
75512496 GATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTTGTAAAA
1 GATTTGTAAAATTACCAAAACACCCCCGATTTGTAAAATTATCAAAATACCCTCGATGTGTAAAA
* *
75512561 TTATCGAAATACCTTT
66 TGACCGAAATACCTTT
*
75512577 GATTTGTAAAATTACCAAAACACCCCCGATTTGTAAAATTATCAAAATACCCTTGCA-GTGTAAA
1 GATTTGTAAAATTACCAAAACACCCCCGATTTGTAAAATTATCAAAATACCCTCG-ATGTGTAAA
*
75512641 ATGACCGACATACC
65 ATGACCGAAATACC
75512655 CCTGTAGTGT
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
81 69 0.99
82 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.30
Consensus pattern (81 bp):
GATTTGTAAAATTACCAAAACACCCCCGATTTGTAAAATTATCAAAATACCCTCGATGTGTAAAA
TGACCGAAATACCTTT
Found at i:75512656 original size:54 final size:54
Alignment explanation
Indices: 75512473--75512656 Score: 181
Period size: 54 Copynumber: 3.4 Consensus size: 54
75512463 ACCCCCGATT
* * * * * * * * *
75512473 TGTAAAATTATCAAAACACCCTCGATTTGTAAAATTACCGAAACACCCTCGATT
1 TGTAAAATGACCAAAATACCCCCGATTTGTAAAATTATCAAAATACCCTTGATG
* * * * * *
75512527 TGTAAAATTATCAAAATACCCTCGATTTGTAAAATTATCGAAATACCTTTGATT
1 TGTAAAATGACCAAAATACCCCCGATTTGTAAAATTATCAAAATACCCTTGATG
* *
75512581 TGTAAAATTACCAAAACACCCCCGATTTGTAAAATTATCAAAATACCCTTGCA-G
1 TGTAAAATGACCAAAATACCCCCGATTTGTAAAATTATCAAAATACCCTTG-ATG
* *
75512635 TGTAAAATGACCGACATACCCC
1 TGTAAAATGACCAAAATACCCC
75512657 TGTAGTGTAA
Statistics
Matches: 114, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
54 113 0.99
55 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (54 bp):
TGTAAAATGACCAAAATACCCCCGATTTGTAAAATTATCAAAATACCCTTGATG
Found at i:75512666 original size:81 final size:81
Alignment explanation
Indices: 75512491--75512669 Score: 218
Period size: 81 Copynumber: 2.2 Consensus size: 81
75512481 TATCAAAACA
* * * *
75512491 CCCTCGATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTTG
1 CCCT-GATGTGTAAAATTACCAAAACACCCCCGATTTGTAAAATTATCAAAATACCCTCGATGTG
* *
75512556 TAAAATTATCGAAATAC
65 TAAAATGACCGAAATAC
** * *
75512573 CTTTGATTTGTAAAATTACCAAAACACCCCCGATTTGTAAAATTATCAAAATACCCTTGCA-GTG
1 CCCTGATGTGTAAAATTACCAAAACACCCCCGATTTGTAAAATTATCAAAATACCCTCG-ATGTG
*
75512637 TAAAATGACCGACATAC
65 TAAAATGACCGAAATAC
75512654 CCCTG-TAGTGTAAAAT
1 CCCTGAT-GTGTAAAAT
75512670 GACTATTTTG
Statistics
Matches: 83, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
80 1 0.01
81 79 0.95
82 3 0.04
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.30
Consensus pattern (81 bp):
CCCTGATGTGTAAAATTACCAAAACACCCCCGATTTGTAAAATTATCAAAATACCCTCGATGTGT
AAAATGACCGAAATAC
Found at i:75514304 original size:33 final size:34
Alignment explanation
Indices: 75514235--75514308 Score: 114
Period size: 34 Copynumber: 2.2 Consensus size: 34
75514225 TGCATTTATG
*
75514235 GATAATGTTACTATAATAGGCTAAGGCCCACACT
1 GATACTGTTACTATAATAGGCTAAGGCCCACACT
* *
75514269 GATACTGTTACTGTAATGGGCTAAGG-CCACACT
1 GATACTGTTACTATAATAGGCTAAGGCCCACACT
75514302 GATACTG
1 GATACTG
75514309 GGCTGTCACT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
33 14 0.38
34 23 0.62
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (34 bp):
GATACTGTTACTATAATAGGCTAAGGCCCACACT
Found at i:75519452 original size:43 final size:41
Alignment explanation
Indices: 75519355--75519472 Score: 123
Period size: 43 Copynumber: 2.8 Consensus size: 41
75519345 GACTTATAAT
*
75519355 TTACATGTAAGACCAC-GTCTAGGACGTTGGCATTGTACTTGA
1 TTACATGTAAGACC-CTGTCT-GGACGTTGGCATCGTACTTGA
* * *
75519397 TTTCGTGTAAGACCCTGTCTGGAACAG-TGGCATCGATAGTTGA
1 TTACATGTAAGACCCTGTCTGG-AC-GTTGGCATCG-TACTTGA
*
75519440 TTACATGTAAGACCATGTCTGGGACGTTGGCAT
1 TTACATGTAAGACCCTGTCT-GGACGTTGGCAT
75519473 TGTATGAGCT
Statistics
Matches: 63, Mismatches: 7, Indels: 11
0.78 0.09 0.14
Matches are distributed among these distances:
41 3 0.05
42 26 0.41
43 32 0.51
44 2 0.03
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.31
Consensus pattern (41 bp):
TTACATGTAAGACCCTGTCTGGACGTTGGCATCGTACTTGA
Found at i:75524015 original size:40 final size:40
Alignment explanation
Indices: 75523958--75524262 Score: 337
Period size: 40 Copynumber: 7.7 Consensus size: 40
75523948 CTAACGGGGT
* * * ** *
75523958 TAAGTCCCGAAGACATTTGTGCTAGTAATTAATTCCGAGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
*
75523998 TAAGTCCCAAAGGCATTTGTGCGAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
* * *
75524038 TAAGTCCCGAAGGCATTTTTGCGAGTTACTAATTCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
* *
75524078 TAAGTCCCGAAGGCTTTTGTGCAAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
* * *
75524118 TAAGCCCCGAAGGCTTTTGTGCGAGTTACAAATTCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
* * **
75524158 TAAGCCCCGAAGGCATTTGTGCAAGTTA-TTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAAT-TCCGGGC
* * * * *
75524198 TAAGTCCCGAAGGCATCTGTGCTAGTGAC-CATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAAT-TCCGGGC
* *
75524238 TAAGACCCGAAGGC-CTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT
75524263 GGTTATATCC
Statistics
Matches: 229, Mismatches: 34, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
39 10 0.04
40 219 0.96
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
Found at i:75524271 original size:39 final size:38
Alignment explanation
Indices: 75524155--75524287 Score: 133
Period size: 40 Copynumber: 3.4 Consensus size: 38
75524145 ACAAATTCTG
* *
75524155 GGCTAAGCCCCGAAGGCATTTGTGCAAGTTATTATATCC
1 GGCTAAGACCCGAAGGCA-TTGTGCAAGTGATTATATCC
* * **
75524194 GGGCTAAGTCCCGAAGGCATCTGTGCTAGTGACCATATCC
1 -GGCTAAGACCCGAAGGCAT-TGTGCAAGTGATTATATCC
* * *
75524234 GGACTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC
1 GG-CTAAGACCCGAAGGCATTGTGCAAGTGATTATATCC
75524273 GGCTAA-ATCCCGAAG
1 GGCTAAGA-CCCGAAG
75524288 ATAATTGGGT
Statistics
Matches: 79, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
37 1 0.01
38 11 0.14
39 20 0.25
40 47 0.59
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (38 bp):
GGCTAAGACCCGAAGGCATTGTGCAAGTGATTATATCC
Found at i:75524913 original size:56 final size:56
Alignment explanation
Indices: 75524846--75525021 Score: 325
Period size: 56 Copynumber: 3.1 Consensus size: 56
75524836 ACAAGGGATG
*
75524846 ATGGGCAAAACATGTCATGAAACATTTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
75524902 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGTAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
75524958 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
75525014 ATGGGCAA
1 ATGGGCAA
75525022 TAAACTAATA
Statistics
Matches: 116, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 116 1.00
ACGTcount: A:0.45, C:0.09, G:0.22, T:0.24
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:75526250 original size:39 final size:40
Alignment explanation
Indices: 75526150--75526374 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
75526140 TCGAATGATG
* * * *
75526150 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
75526190 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
75526230 TCCGGGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTAAA
* *
75526269 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAATAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
75526309 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
75526350 -CCGGGCTACGTCCCAAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75526375 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 18, Indels: 14
0.83 0.09 0.07
Matches are distributed among these distances:
38 3 0.02
39 31 0.19
40 113 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75526354 original size:80 final size:80
Alignment explanation
Indices: 75526150--75526374 Score: 262
Period size: 79 Copynumber: 2.8 Consensus size: 80
75526140 TCGAATGATG
* * * * * *
75526150 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCTGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
* *
75526213 TTGTGCGAGATACTAAT
64 TTGTGCGAGATAATAAA
*
75526230 TCCGGGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCAT
*
75526292 TTGTGCGAGTTAATAAA
64 TTGTGCGAGATAATAAA
* * *
75526309 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTACGTCCCAAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
75526374 G
66 G
75526375 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
78 2 0.02
79 59 0.48
80 58 0.47
81 5 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATAATAAA
Found at i:75531229 original size:162 final size:160
Alignment explanation
Indices: 75530974--75531286 Score: 473
Period size: 162 Copynumber: 1.9 Consensus size: 160
75530964 ATTACCACAA
* * * * *
75530974 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTGCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAGCC
* * * *
75531039 CGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTCGCACAAAT
66 CGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATA-AAATC-ACTAGCACAAAT
*
75531104 GCCTGCGGGTCTTAGCCCGGATATATCAACTC
129 GCCTGCGGGACTTAGCCCGGATATATCAACTC
* * *
75531136 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCC
1 GCACAAATGCCTGCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAGCC
*
75531201 CGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGC
66 CGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGC
*
75531266 CTTCGGGACTTAGCCCGGATA
131 CTGCGGGACTTAGCCCGGATA
75531287 AAATTCAAAT
Statistics
Matches: 136, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
160 31 0.23
161 4 0.03
162 101 0.74
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (160 bp):
GCACAAATGCCTGCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAGCC
CGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGC
CTGCGGGACTTAGCCCGGATATATCAACTC
Found at i:75531290 original size:40 final size:40
Alignment explanation
Indices: 75530974--75531286 Score: 457
Period size: 40 Copynumber: 7.8 Consensus size: 40
75530964 ATTACCACAA
* * ** *
75530974 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
75531014 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
75531054 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGG--ATATATCAACTC
*
75531096 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
75531136 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
75531176 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
75531216 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
75531256 GCACAATTGCCTTCGGGACTTAGCCCGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
75531287 AAATTCAAAT
Statistics
Matches: 253, Mismatches: 17, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
39 1 0.00
40 211 0.83
41 4 0.02
42 37 0.15
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:75537415 original size:39 final size:40
Alignment explanation
Indices: 75537250--75537474 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
75537240 GCTCCTCGTT
* * * *
75537250 CAAATGCCTTTGGGACATAGCCCTG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
75537290 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
75537330 CAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * * *
75537370 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGTA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
75537409 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
75537450 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
75537475 CATCATTCAA
Statistics
Matches: 159, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 114 0.72
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:75537434 original size:79 final size:80
Alignment explanation
Indices: 75537276--75537474 Score: 242
Period size: 79 Copynumber: 2.5 Consensus size: 80
75537266 ATAGCCCTGT
* * *
75537276 TATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCATC
1 TATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCATC
75537341 GGGACTTAACCCGGA
66 GGGACTTAACCCGGA
* * * *
75537356 TTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGTACAAATGCCTTC
1 TATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCATC
**
75537420 -GGATCTTAGTCCGGA
66 GGGA-CTTAACCCGGA
* * * *
75537435 TATGGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGA
1 TATAGTAAC-TCGCACCAATGCCTTCGGGACTTAGCCCGGA
75537475 CATCATTCAA
Statistics
Matches: 102, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 3 0.03
79 58 0.57
80 41 0.40
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
TATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCATC
GGGACTTAACCCGGA
Found at i:75545313 original size:39 final size:40
Alignment explanation
Indices: 75545156--75545380 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
75545146 GCTCCTCGTT
* * *
75545156 CAAATGCCTTCGGGACATAGCCCTG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
75545196 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
75545236 CAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
75545276 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
75545315 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
75545356 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
75545381 CATCATTCAA
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 115 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:75545368 original size:119 final size:120
Alignment explanation
Indices: 75545158--75545380 Score: 283
Period size: 119 Copynumber: 1.9 Consensus size: 120
75545148 TCCTCGTTCA
* *
75545158 AATGCCTTCGGGACATAGCCCTGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
75545223 TTAGTAACTCGCACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
75545278 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * * *
75545340 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATGCCATCGGGACTTAACCCGGA
75545381 CATCATTCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
118 4 0.05
119 64 0.73
120 20 0.23
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:75548331 original size:8 final size:8
Alignment explanation
Indices: 75548309--75548338 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
75548299 GTGCAAAGAA
75548309 ATTTTGTG
1 ATTTTGTG
75548317 TATTTTGTG
1 -ATTTTGTG
75548326 ATTTTGTG
1 ATTTTGTG
75548334 ATTTT
1 ATTTT
75548339 ATGAATTAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.13, C:0.00, G:0.20, T:0.67
Consensus pattern (8 bp):
ATTTTGTG
Found at i:75548874 original size:43 final size:42
Alignment explanation
Indices: 75548767--75548900 Score: 139
Period size: 43 Copynumber: 3.1 Consensus size: 42
75548757 CGACCACATC
* * *
75548767 TGGGACATTGGCATCGACT-TATGATTTACGTGTAAGACCATGTT
1 TGGGACA-TGGCATCGA-TATTTGATTT-CATGTAAGACCCTGTT
* *
75548811 TGGGACATCGACATCG-TATTTGATTTCTTGTAAGACCCTGTT
1 TGGGACAT-GGCATCGATATTTGATTTCATGTAAGACCCTGTT
*
75548853 TGGGACAGTGGCATCGATATTTGATTACATGTAAGACCAC-GTT
1 TGGGACA-TGGCATCGATATTTGATTTCATGTAAGACC-CTGTT
75548896 TGGGA
1 TGGGA
75548901 TGTTGGCAAT
Statistics
Matches: 78, Mismatches: 7, Indels: 11
0.81 0.07 0.11
Matches are distributed among these distances:
42 28 0.36
43 36 0.46
44 14 0.18
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (42 bp):
TGGGACATGGCATCGATATTTGATTTCATGTAAGACCCTGTT
Found at i:75555001 original size:40 final size:40
Alignment explanation
Indices: 75554944--75555161 Score: 309
Period size: 40 Copynumber: 5.5 Consensus size: 40
75554934 CGGATGATAA
* *
75554944 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
75554984 CCGGGCTAAG-CCTCGAAGGCATTTCTGCGCGTTACTATAT
1 CCGGGCTAAGTCC-CGAAGGCATTTGTGCGAGTTACTATAT
75555024 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
75555064 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
75555104 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
75555144 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
75555162 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
39 19 0.12
40 141 0.87
41 3 0.02
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:75578607 original size:29 final size:29
Alignment explanation
Indices: 75578565--75578622 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
75578555 CGATGTAAGT
75578565 TCATATGTAAATAATGCAATATTATGATC
1 TCATATGTAAATAATGCAATATTATGATC
75578594 TCATATGTAAATAATGCAATATTATGATC
1 TCATATGTAAATAATGCAATATTATGATC
75578623 ATATTATTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.38
Consensus pattern (29 bp):
TCATATGTAAATAATGCAATATTATGATC
Found at i:75586470 original size:48 final size:48
Alignment explanation
Indices: 75586392--75586496 Score: 183
Period size: 48 Copynumber: 2.2 Consensus size: 48
75586382 TATACAAGAT
* *
75586392 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAAATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
*
75586440 AAGTATGTATGAAATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAAATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
75586488 AAATATGTA
1 AAATATGTA
75586497 GGAGATGTGT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
AAATATGTATGAAATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
Found at i:75586696 original size:37 final size:37
Alignment explanation
Indices: 75586643--75586782 Score: 244
Period size: 37 Copynumber: 3.8 Consensus size: 37
75586633 GGAAATATAT
75586643 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
75586680 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
75586717 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
75586754 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
75586783 GGACTATTCG
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:75591934 original size:22 final size:22
Alignment explanation
Indices: 75591892--75591934 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
75591882 CAATCAATTT
*
75591892 CATACTCAATTTCATATCAAAG
1 CATACTCAATTTCATAACAAAG
75591914 CATAC-CAATTTCATGAACAAA
1 CATACTCAATTTCAT-AACAAA
75591935 ATCATGCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.44, C:0.23, G:0.05, T:0.28
Consensus pattern (22 bp):
CATACTCAATTTCATAACAAAG
Found at i:75592679 original size:42 final size:43
Alignment explanation
Indices: 75592609--75592755 Score: 163
Period size: 43 Copynumber: 3.4 Consensus size: 43
75592599 TATGCTAGAT
* * * *
75592609 ATGGTCTTACATGATATCAAATATCGATGCCACTGTCCCAGAC
1 ATGGTCTTACACGAAATCATATATCGATGCCAATGTCCCAGAC
* *
75592652 AGGGTCTTACACGAAATCATATA-CGATGCCAATGTCCCAAAC
1 ATGGTCTTACACGAAATCATATATCGATGCCAATGTCCCAGAC
* * * *
75592694 ATGGTCTTACATGTAATC-TCAGATCGATACCAATGTCCCAGAC
1 ATGGTCTTACACGAAATCAT-ATATCGATGCCAATGTCCCAGAC
* *
75592737 ATAGTCTTACACGATATCA
1 ATGGTCTTACACGAAATCA
75592756 CATCTCAGAA
Statistics
Matches: 85, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
41 1 0.01
42 34 0.40
43 50 0.59
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.27
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCATATATCGATGCCAATGTCCCAGAC
Found at i:75596076 original size:235 final size:235
Alignment explanation
Indices: 75595656--75596126 Score: 816
Period size: 235 Copynumber: 2.0 Consensus size: 235
75595646 GCCTAAAAAG
*
75595656 CTTCTAACCTCGGATACGTTTCTCAGTGGTTTCCAATCAACAATGGCCGAAATCTTACTCGGATC
1 CTTCTAACCTCGGATACCTTTCTCAGTGGTTTCCAATCAACAATGGCCGAAATCTTACTCGGATC
* * *
75595721 AACTCAGATCCCTTCCCCCGACACAATATGCCCTAAAAATCTGACTTCTCTAAGCCAGAACTCCC
66 AACTCAGATCCCTTCCCCCGACACAATATACCATAAAAATCTGACTTCTCTAAGCCAGAACTCAC
*
75595786 TTTTGCTAAACTTAGCATACAACTACCTATCTCTCAAGGTTTACAAAATAGTCCTCAGATGATCG
131 TTTTGCTAAACTTAGCATACAACTACCTATCTCTCAAGGTTTACAAAACAGTCCTCAGATGATCG
*
75595851 GTATGTTCAGACTCGTCACGAGAATAAATCAGGATATCAT
196 GCATGTTCAGACTCGTCACGAGAATAAATCAGGATATCAT
*
75595891 CTTCTAACCTCGGATACCTTTCTTAGTGGTTTCCAATCAACAATGGCCGAAATCTTACTCGGATC
1 CTTCTAACCTCGGATACCTTTCTCAGTGGTTTCCAATCAACAATGGCCGAAATCTTACTCGGATC
** *
75595956 AACTTGGATCCCTTCCCCCGACATAATATACCATAAAAATCTGACTTCTCTAAGCCAGAACTCAC
66 AACTCAGATCCCTTCCCCCGACACAATATACCATAAAAATCTGACTTCTCTAAGCCAGAACTCAC
* * *
75596021 TTTTGCTAAACTTAGCATACAACTACCTATCTCTTAAGGTTTGCAAAACAGTCCTCAGATTATCG
131 TTTTGCTAAACTTAGCATACAACTACCTATCTCTCAAGGTTTACAAAACAGTCCTCAGATGATCG
*
75596086 GCATGTTTAGACTCGTCACGAGAATAAATCAGGATATCAT
196 GCATGTTCAGACTCGTCACGAGAATAAATCAGGATATCAT
75596126 C
1 C
75596127 GATAAACACC
Statistics
Matches: 222, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
235 222 1.00
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (235 bp):
CTTCTAACCTCGGATACCTTTCTCAGTGGTTTCCAATCAACAATGGCCGAAATCTTACTCGGATC
AACTCAGATCCCTTCCCCCGACACAATATACCATAAAAATCTGACTTCTCTAAGCCAGAACTCAC
TTTTGCTAAACTTAGCATACAACTACCTATCTCTCAAGGTTTACAAAACAGTCCTCAGATGATCG
GCATGTTCAGACTCGTCACGAGAATAAATCAGGATATCAT
Found at i:75600896 original size:48 final size:48
Alignment explanation
Indices: 75600753--75600896 Score: 180
Period size: 48 Copynumber: 3.0 Consensus size: 48
75600743 GCAGTACATG
* * *
75600753 TGATCCCATGTAAGACCATGCCTGGGACATGGCATTGGCATCGAAATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATT
* **
75600801 TGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATTAATATT
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATT
* * * * * *
75600849 TGATCTCATGTAAGACCATATTTGGGATATGACATTGGTATCGATATT
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATT
75600897 ATAACATCTT
Statistics
Matches: 81, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 81 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (48 bp):
TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATT
Found at i:75605048 original size:27 final size:27
Alignment explanation
Indices: 75605017--75605147 Score: 181
Period size: 27 Copynumber: 4.9 Consensus size: 27
75605007 GACCCCTAAT
*
75605017 TGGTAAAATGACTATTTTGCCCTTACG
1 TGGTAAAATGACTATTTTGCCCTTATG
* *
75605044 TGGTAAAATGATTATTTTACCCTTATG
1 TGGTAAAATGACTATTTTGCCCTTATG
* *
75605071 TGGTAAAATGACTTTTTTGCCTTTATG
1 TGGTAAAATGACTATTTTGCCCTTATG
* *
75605098 TGGTAAAATGACTGTTTTGCCCTTATA
1 TGGTAAAATGACTATTTTGCCCTTATG
* *
75605125 TGGTAAGATGATTATTTTGCCCT
1 TGGTAAAATGACTATTTTGCCCT
75605148 AGGTGATGTA
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 91 1.00
ACGTcount: A:0.25, C:0.14, G:0.18, T:0.43
Consensus pattern (27 bp):
TGGTAAAATGACTATTTTGCCCTTATG
Found at i:75612508 original size:29 final size:29
Alignment explanation
Indices: 75612445--75612581 Score: 152
Period size: 29 Copynumber: 4.8 Consensus size: 29
75612435 TTCATATACC
* * * *
75612445 TGTATCTGGCCCATTAAGCTC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
75612473 T-TCATATGGCCCATTAGGCCTAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
75612502 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* * *
75612531 TTTATATGTCCCAATAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
75612560 TTTATATGGCCCGTTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
75612582 GTCACATTCA
Statistics
Matches: 92, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
27 1 0.01
28 15 0.16
29 75 0.82
30 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:75612556 original size:58 final size:57
Alignment explanation
Indices: 75612442--75612594 Score: 189
Period size: 58 Copynumber: 2.7 Consensus size: 57
75612432 AAATTCATAT
* * * * * *
75612442 ACCTGTATCTGGCCCATTAAGCTCAATCATATTCATATGGCCCATTAGGCCTAAATC
1 ACCTGTATATGGCCCATTAGGCCCAATCACATTCATATGGCCCAATAGGCCCAAATC
* *
75612499 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGTCCCAATAGGCCCAAATC
1 ACCTGTATATGGCCCATTAGGCCC-AATCACATTCATATGGCCCAATAGGCCCAAATC
* * * *
75612557 ACATTTATATGGCCCGTTAGGCCCAGTCACATTCATAT
1 ACCTGTATATGGCCCATTAGGCCCAATCACATTCATAT
75612595 TCATGCTCAC
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
57 33 0.40
58 49 0.60
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAGGCCCAATCACATTCATATGGCCCAATAGGCCCAAATC
Found at i:75616959 original size:14 final size:14
Alignment explanation
Indices: 75616940--75616966 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
75616930 AACTCGAACT
75616940 TTGTTTCTTACGAC
1 TTGTTTCTTACGAC
75616954 TTGTTTCTTACGA
1 TTGTTTCTTACGA
75616967 TTTCGATGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.19, G:0.15, T:0.52
Consensus pattern (14 bp):
TTGTTTCTTACGAC
Found at i:75619308 original size:36 final size:36
Alignment explanation
Indices: 75619261--75619330 Score: 140
Period size: 36 Copynumber: 1.9 Consensus size: 36
75619251 AATCTACATT
75619261 TTTCAACTATTGATAATCTAAGCGTACATACTTATA
1 TTTCAACTATTGATAATCTAAGCGTACATACTTATA
75619297 TTTCAACTATTGATAATCTAAGCGTACATACTTA
1 TTTCAACTATTGATAATCTAAGCGTACATACTTA
75619331 CCTTCCATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.39
Consensus pattern (36 bp):
TTTCAACTATTGATAATCTAAGCGTACATACTTATA
Found at i:75628200 original size:47 final size:47
Alignment explanation
Indices: 75628146--75628794 Score: 1001
Period size: 47 Copynumber: 13.6 Consensus size: 47
75628136 GTATATTTGA
*
75628146 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
75628193 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
75628240 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
75628289 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
* * * *
75628338 ATGAATGTTAAAGTGTATATATGTGATAAGGCTTAATAGCCGATATG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * *
75628385 ATAAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
75628432 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
* *
75628481 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATATG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
75628528 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
75628575 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGTCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
75628624 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
75628671 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * * *
75628718 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
75628765 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
75628795 TCCTGAAGGG
Statistics
Matches: 557, Mismatches: 39, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
47 375 0.67
49 182 0.33
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:75628280 original size:96 final size:94
Alignment explanation
Indices: 75628146--75628794 Score: 1001
Period size: 96 Copynumber: 6.8 Consensus size: 94
75628136 GTATATTTGA
*
75628146 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
75628211 ATATGTGATAAGGCCGAATGGCCAATGTG
66 ATATGTGATAAGGCCTAATGGCCGATGTG
* *
75628240 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-
75628305 ATATATATGTGATAAGGCCTAATGGCCGATGTG
63 -TATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * *
75628338 ATGAATGTTAAAGTGTATATATGTGATAAGGCTTAATAGCCGATATGATAAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
75628403 ATATGTGATAAGGCCGAATGGCCAATGTG
66 ATATGTGATAAGGCCTAATGGCCGATGTG
75628432 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
75628497 ATATATGTGATAAGGCCTAATAGCCGATATG
64 ATATATGTGATAAGGCCTAATGGCCGATGTG
* *
75628528 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
*
75628593 ATATATGTGATAAGGCCTAATGGTCGATGTG
64 ATATATGTGATAAGGCCTAATGGCCGATGTG
75628624 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
75628689 ATATGTGATAAGGCCTAATGGCCGATGTG
66 ATATGTGATAAGGCCTAATGGCCGATGTG
* * * * * * *
75628718 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
75628783 AAATGTGATAAG
66 ATATGTGATAAG
75628795 TCCTGAAGGG
Statistics
Matches: 508, Mismatches: 39, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
94 204 0.40
96 260 0.51
98 44 0.09
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:75628308 original size:143 final size:142
Alignment explanation
Indices: 75628146--75628794 Score: 1050
Period size: 143 Copynumber: 4.5 Consensus size: 142
75628136 GTATATTTGA
*
75628146 ATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTA
1 ATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * *
75628210 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
66 TATATGTGATAAGGCCTAATAGCCGATATGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
75628275 GAATGGCCAATGTG
129 GAATGGCCAATGTG
*
75628289 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTTAAAGTGT
1 ATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
75628354 ATATATGTGATAAGGCTTAATAGCCGATATGATAAATGTGAAAGTGTATATATGTGATAAGGCCG
65 ATATATGTGATAAGGCCTAATAGCCGATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
75628419 AATGGCCAATGTG
130 AATGGCCAATGTG
75628432 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
75628497 ATATATGTGATAAGGCCTAATAGCCGATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
65 ATATATGTGATAAGGCCTAATAGCCGATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
75628562 AATGGCCAATGTG
130 AATGGCCAATGTG
*
75628575 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * *
75628640 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
65 ATATATGTGATAAGGCCTAATAGCCGATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
*
75628705 AATGGCCGATGTG
130 AATGGCCAATGTG
* * * * * * *
75628718 ATGAATGTGAAAGTG-TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA
1 ATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
75628782 TAAATGTGATAAG
66 TATATGTGATAAG
75628795 TCCTGAAGGG
Statistics
Matches: 479, Mismatches: 25, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
141 53 0.11
143 340 0.71
145 86 0.18
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (142 bp):
ATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
TATATGTGATAAGGCCTAATAGCCGATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
ATGGCCAATGTG
Found at i:75630515 original size:80 final size:80
Alignment explanation
Indices: 75630246--75630589 Score: 548
Period size: 79 Copynumber: 4.3 Consensus size: 80
75630236 GAGAATTGAG
75630246 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGT-CCG
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
75630310 AGGAGCATTCGTGCT
66 AGGAGCATTCGTGCT
*
75630325 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCC-GGATAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
75630389 AGGAGCATTCGTGCT
66 AGGAGCATTCGTGCT
75630404 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
75630469 AGGAGCATTCGTGCT
66 AGGAGCATTCGTGCT
* * * * * ** *
75630484 AGTGATGTATCCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCA
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
* *
75630549 AAGAGCATTCGTGTT
66 AGGAGCATTCGTGCT
* * *
75630564 GGTGTTATATCCGGGCTAGGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCCGA
75630590 AGAGTAATCA
Statistics
Matches: 245, Mismatches: 18, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
78 7 0.03
79 122 0.50
80 116 0.47
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (80 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
AGGAGCATTCGTGCT
Found at i:75630607 original size:40 final size:40
Alignment explanation
Indices: 75630246--75630589 Score: 548
Period size: 40 Copynumber: 8.7 Consensus size: 40
75630236 GAGAATTGAG
75630246 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
75630286 AGTGATATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
75630325 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
75630365 AGTGATATATCC-GGATAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
75630404 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
75630444 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * *
75630484 AGTGATGTATCCGGGCTAAGTTCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* ** * * *
75630524 AGTGATATATCCGTGCTAAACCCCAAAGAGCATTCGTGTT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
75630564 GGTGTTATATCCGGGCTAGGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCCGA
75630590 AGAGTAATCA
Statistics
Matches: 283, Mismatches: 19, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
39 77 0.27
40 206 0.73
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:75634509 original size:47 final size:47
Alignment explanation
Indices: 75634455--75635056 Score: 934
Period size: 47 Copynumber: 12.6 Consensus size: 47
75634445 TTATATTTGA
*
75634455 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
75634502 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
75634549 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
* * *
75634598 ATGAATGTGCAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
*
75634647 ATGAATGTAAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
* *
75634696 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATATG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
75634743 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
75634790 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
*
75634839 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
75634886 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
75634933 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * * *
75634980 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
75635027 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
75635057 TCCCGAAGGG
Statistics
Matches: 522, Mismatches: 29, Indels: 8
0.93 0.05 0.01
Matches are distributed among these distances:
47 338 0.65
49 184 0.35
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:75634617 original size:143 final size:142
Alignment explanation
Indices: 75634455--75635056 Score: 938
Period size: 143 Copynumber: 4.2 Consensus size: 142
75634445 TTATATTTGA
* * *
75634455 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTG-TA
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATA
* *
75634519 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
66 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
75634584 GAATGGCCAATGTG
129 GAATAGCCAATGTG
* *
75634598 ATGAATGTGCAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAAAGTGT
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-
75634663 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
63 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
* * *
75634728 CTAATAGCCGATATG
128 CGAATAGCCAATGTG
75634743 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-AT
*
75634808 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
65 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
*
75634873 AATAGCCGATGTG
130 AATAGCCAATGTG
* *
75634886 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TA
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATA
* *
75634950 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGA
66 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
* * *
75635015 GTGGCCAACGTG
131 ATAGCCAATGTG
* *
75635027 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
75635057 TCCCGAAGGG
Statistics
Matches: 430, Mismatches: 25, Indels: 10
0.92 0.05 0.02
Matches are distributed among these distances:
141 100 0.23
143 200 0.47
145 85 0.20
147 45 0.10
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (142 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATA
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
ATAGCCAATGTG
Found at i:75638263 original size:42 final size:43
Alignment explanation
Indices: 75638166--75638277 Score: 126
Period size: 42 Copynumber: 2.7 Consensus size: 43
75638156 AGCTCGTACA
*
75638166 ATGCTAATGTCCCAGAC-GTGGTCTTACATGTAAACAAATATCG
1 ATGCTAATGTCCCAGACAG-GGTCTTACATGTAAACAAATATCC
*
75638209 ATGCCACA--TCCCAGACAGGGTCTTACATG-AAATCAAATA-CC
1 ATGCTA-ATGTCCCAGACAGGGTCTTACATGTAAA-CAAATATCC
* *
75638250 ATGCTGATGTCCCAGACATGGTCTTACA
1 ATGCTAATGTCCCAGACAGGGTCTTACA
75638278 CATAAATCAT
Statistics
Matches: 59, Mismatches: 5, Indels: 11
0.79 0.07 0.15
Matches are distributed among these distances:
40 1 0.02
41 8 0.14
42 43 0.73
43 6 0.10
44 1 0.02
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCTAATGTCCCAGACAGGGTCTTACATGTAAACAAATATCC
Found at i:75643134 original size:17 final size:18
Alignment explanation
Indices: 75643112--75643145 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75643102 CACATTGAAG
75643112 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
75643129 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
75643146 CTTCTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:75644422 original size:28 final size:28
Alignment explanation
Indices: 75644385--75644478 Score: 125
Period size: 28 Copynumber: 3.4 Consensus size: 28
75644375 AAGTCTACAT
* *
75644385 ACATGCATATGGCCCATTAGGCCCAATC
1 ACATTCATATGGCCCATCAGGCCCAATC
* * *
75644413 TCATTCATATGGCCCATCGGGCCTAATC
1 ACATTCATATGGCCCATCAGGCCCAATC
* *
75644441 ACTTTCATATGGCCCGTCAGGCCCAATC
1 ACATTCATATGGCCCATCAGGCCCAATC
75644469 ACATTCATAT
1 ACATTCATAT
75644479 TCATGTAATC
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 55 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.27
Consensus pattern (28 bp):
ACATTCATATGGCCCATCAGGCCCAATC
Found at i:75650182 original size:140 final size:139
Alignment explanation
Indices: 75649948--75650205 Score: 342
Period size: 140 Copynumber: 1.8 Consensus size: 139
75649938 GTCGATGCGA
* * * *
75649948 TGTCCCAGACCTGGTCTTACACTGACTATCATCTCGTAGCCGATACATGTCCCAGACATGTCTTA
1 TGTCCCAAACATGGTCTTACACTGACTATCATCTCGTAACCAATACATGTCCCAGACATGTCTTA
* * *
75650013 CACTGGCTTATGCCTCAAGGTCGGCGCATGTCTCAGACATGTCTTACACTAGCACTCGTCTCAAT
66 CACTGGCTTA-GCATCAAGGTCGGCGCATGTCCCAGACATGTCTAACACTAGCACTCGTCTCAAT
75650078 ACCGATGCCT
130 ACCGATGCCT
* * * *
75650088 TGTCCCAAACATGGTCTTACACTGACTGTCATCTCGTAACTAATGCATGTCCCAGATATGTCTTA
1 TGTCCCAAACATGGTCTTACACTGACTATCATCTCGTAACCAATACATGTCCCAGACATGTCTTA
*
75650153 CACTGGCTTA-CAT-AATGT-GGCCTATGCATGTCCCAGACATGTCTAACACTAGC
66 CACTGGCTTAGCATCAAGGTCGG-C---GCATGTCCCAGACATGTCTAACACTAGC
75650206 CAACAATAAC
Statistics
Matches: 102, Mismatches: 12, Indels: 8
0.84 0.10 0.07
Matches are distributed among these distances:
136 2 0.02
137 5 0.05
138 2 0.02
140 93 0.91
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (139 bp):
TGTCCCAAACATGGTCTTACACTGACTATCATCTCGTAACCAATACATGTCCCAGACATGTCTTA
CACTGGCTTAGCATCAAGGTCGGCGCATGTCCCAGACATGTCTAACACTAGCACTCGTCTCAATA
CCGATGCCT
Found at i:75659960 original size:13 final size:13
Alignment explanation
Indices: 75659938--75659984 Score: 76
Period size: 13 Copynumber: 3.6 Consensus size: 13
75659928 CAGACACACA
75659938 CCCGTGTCAATGG
1 CCCGTGTCAATGG
*
75659951 CCCATGTCAATGG
1 CCCGTGTCAATGG
*
75659964 CTCGTGTCAATGG
1 CCCGTGTCAATGG
75659977 CCCGTGTC
1 CCCGTGTC
75659985 CCTCACACGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.15, C:0.32, G:0.28, T:0.26
Consensus pattern (13 bp):
CCCGTGTCAATGG
Found at i:75662279 original size:39 final size:39
Alignment explanation
Indices: 75662144--75662328 Score: 228
Period size: 40 Copynumber: 4.7 Consensus size: 39
75662134 TCGGATGATA
* * **
75662144 ACCGGGCTAAGTCCCGATA-GCATTTGAGCTAGTGGCTAAT
1 ACCGGGCTAAGTCCCGA-AGGCATTTGTGCGAGTTACT-AT
* * * * *
75662184 TCTGGGCTAAGTCCCGAAGGAATTCGTGCGAGCTACTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
*
75662223 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAT
1 A-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
*
75662263 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
75662302 AACCGGGCTAAGTCCCGAAGGCATTTG
1 -ACCGGGCTAAGTCCCGAAGGCATTTG
75662329 AGCTAGTGGC
Statistics
Matches: 125, Mismatches: 17, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
39 39 0.31
40 86 0.69
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
Found at i:75662361 original size:79 final size:79
Alignment explanation
Indices: 75662141--75662351 Score: 257
Period size: 79 Copynumber: 2.7 Consensus size: 79
75662131 TGTTCGGATG
*
75662141 ATAACCGGGCTAAGTCCCGATA-GCATTTGAGCTAGTGGCTA-ATTCTGGGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGA-AGGCATTTGAGCTAGTGGCTATA-TC-CGGCTAAGTCCCGAAGG
*
75662204 AATTCGTGCGAGCTACT
63 AATTCGTGCAAGCTACT
* * * *** *
75662221 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAAGTCCCGAAGGAA
* *
75662285 TTTGTGCAAGTTACT
65 TTCGTGCAAGCTACT
*
75662300 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCAGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGCTAA
75662352 ACTCCGAAGG
Statistics
Matches: 109, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
79 73 0.67
80 35 0.32
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGCTAAGTCCCGAAGGAAT
TCGTGCAAGCTACT
Found at i:75664311 original size:46 final size:47
Alignment explanation
Indices: 75664222--75664393 Score: 221
Period size: 47 Copynumber: 3.7 Consensus size: 47
75664212 TATTTCAAGT
75664222 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-ATCATCTCATAGC
* *
75664270 CGATG-CATATCCCAGACAT-GTCTTACACT-AGCACTCGTCTCAATA-C
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CA-TCATCTC-ATAGC
* *
75664316 CGATGCCATGTCCCTGACATGGTCTTACACTGACTATCATCTCGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-ATCATCTCATAGC
75664364 CGATG-CATGTCCCAGACAT-GTCTTACACTG
1 CGATGCCATGTCCCAGACATGGTCTTACACTG
75664394 GCTTACATAA
Statistics
Matches: 109, Mismatches: 7, Indels: 18
0.81 0.05 0.13
Matches are distributed among these distances:
45 2 0.02
46 34 0.31
47 43 0.39
48 28 0.26
49 2 0.02
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACATCATCTCATAGC
Found at i:75664335 original size:47 final size:46
Alignment explanation
Indices: 75664222--75664438 Score: 221
Period size: 46 Copynumber: 4.7 Consensus size: 46
75664212 TATTTCAAGT
75664222 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGC
1 CGATG-CATGTCCCAGACATGGTCTTACACTGAC-ATCATCTCATAGC
* *
75664270 CGATGCATATCCCAGACAT-GTCTTACACT-AGCACTCGTCTCAATA-C
1 CGATGCATGTCCCAGACATGGTCTTACACTGA-CA-TCATCTC-ATAGC
* *
75664316 CGATGCCATGTCCCTGACATGGTCTTACACTGACTATCATCTCGTAGC
1 CGATG-CATGTCCCAGACATGGTCTTACACTGAC-ATCATCTCATAGC
* * * * *
75664364 CGATGCATGTCCCAGACAT-GTCTTACACTGGCTTACATAAT-GTGGC
1 CGATGCATGTCCCAGACATGGTCTTACACTGACAT-CAT-CTCATAGC
*
75664410 CTATGCATGTCCCAGACAT-GTCTTACACT
1 CGATGCATGTCCCAGACATGGTCTTACACT
75664439 AGCCAACAAT
Statistics
Matches: 147, Mismatches: 12, Indels: 22
0.81 0.07 0.12
Matches are distributed among these distances:
45 3 0.02
46 70 0.48
47 44 0.30
48 28 0.19
49 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGGTCTTACACTGACATCATCTCATAGC
Found at i:75664383 original size:94 final size:94
Alignment explanation
Indices: 75664222--75664392 Score: 315
Period size: 94 Copynumber: 1.8 Consensus size: 94
75664212 TATTTCAAGT
75664222 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGCCGATGCATATCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGCCGATGCATATCCCAGAC
75664287 ATGTCTTACACTAGCACTCGTCTCAATAC
66 ATGTCTTACACTAGCACTCGTCTCAATAC
* * *
75664316 CGATGCCATGTCCCTGACATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGCCGATGCATATCCCAGAC
75664381 ATGTCTTACACT
66 ATGTCTTACACT
75664393 GGCTTACATA
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 74 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGCCGATGCATATCCCAGAC
ATGTCTTACACTAGCACTCGTCTCAATAC
Found at i:75669374 original size:23 final size:23
Alignment explanation
Indices: 75669322--75669366 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
75669312 TTTAATCAAG
75669322 AAGCTCACGAAGAGCCTATCAGA
1 AAGCTCACGAAGAGCCTATCAGA
75669345 AAGCTCACGAAGAGCCTATCAG
1 AAGCTCACGAAGAGCCTATCAG
75669367 GATGCTCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.38, C:0.27, G:0.22, T:0.13
Consensus pattern (23 bp):
AAGCTCACGAAGAGCCTATCAGA
Found at i:75669380 original size:23 final size:23
Alignment explanation
Indices: 75669322--75669383 Score: 79
Period size: 23 Copynumber: 2.7 Consensus size: 23
75669312 TTTAATCAAG
*
75669322 AAGCTCACGAAGAGCCTATCAGA
1 AAGCTCAAGAAGAGCCTATCAGA
* *
75669345 AAGCTCACGAAGAGCCTATCAGG
1 AAGCTCAAGAAGAGCCTATCAGA
* *
75669368 ATGCTCAATAAGAGCC
1 AAGCTCAAGAAGAGCC
75669384 ATTTAATGGG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.37, C:0.26, G:0.23, T:0.15
Consensus pattern (23 bp):
AAGCTCAAGAAGAGCCTATCAGA
Found at i:75671484 original size:55 final size:53
Alignment explanation
Indices: 75671397--75671630 Score: 210
Period size: 55 Copynumber: 4.4 Consensus size: 53
75671387 ATTAGGGTTT
* *
75671397 AAGGATACCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGAC-ATTGGTAA-GTTTCTAAGGA
* * * *
75671452 GAGGATACCATGTAAGACCATGTCAAGACATGACATTGATAAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAAGTT--TCTAAGG-A
* * * * *
75671508 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCGTTGGTGAG-TTCATAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAAGTTTC-TAAGGA
* * * * *
75671560 AATGATACCATGTAAGACCATGTCGAGACCTGACAATGGTAAGTTTC--A--A
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAAGTTTCTAAGGA
* *
75671609 AACGATACCACGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
75671631 AAAATTCATG
Statistics
Matches: 146, Mismatches: 27, Indels: 18
0.76 0.14 0.09
Matches are distributed among these distances:
49 21 0.14
51 1 0.01
52 5 0.03
53 37 0.25
54 11 0.08
55 68 0.47
56 3 0.02
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAAGTTTCTAAGGA
Found at i:75671603 original size:108 final size:110
Alignment explanation
Indices: 75671404--75671604 Score: 282
Period size: 108 Copynumber: 1.8 Consensus size: 110
75671394 TTTAAGGATA
**
75671404 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGTGAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGAAAGGATACCATGTAAGA
*
75671469 CCATGTCAAGACATGACATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGACAATGATAAGTTACTATAAGGCAAAGGTC
* * * *
75671514 CCATGTAAGACCATGCCAAGGCATGGC-GTTGGTGA-G-TTCATAAGGAAATGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGAAAGGATACCATGTAAG
* * *
75671576 ACCATGTCGAGACCTGACAATGGTAAGTT
65 ACCATGTCAAGACATGACAATGATAAGTT
75671605 TCAAAACGAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.56
109 6 0.08
110 26 0.32
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGAAAGGATACCATGTAAGA
CCATGTCAAGACATGACAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:75676483 original size:27 final size:28
Alignment explanation
Indices: 75676452--75676505 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
75676442 TCAAAATCCA
* *
75676452 TACTTTAATTA-TAAAATATTTAATTTG
1 TACTTAAATTATTAAAATATTGAATTTG
75676479 TACTTAAATTATTAAAATATTGAATTT
1 TACTTAAATTATTAAAATATTGAATTT
75676506 TAATTATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 10 0.42
28 14 0.58
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.50
Consensus pattern (28 bp):
TACTTAAATTATTAAAATATTGAATTTG
Found at i:75683135 original size:20 final size:20
Alignment explanation
Indices: 75683093--75683135 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
75683083 TTATCTATGA
* *
75683093 ATAAATTTTCATTTTCTACC
1 ATAAATTTTAATTTTCTAAC
75683113 ATAAATTTTTAATTTTC-AAC
1 ATAAA-TTTTAATTTTCTAAC
75683133 ATA
1 ATA
75683136 TTCATCCATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.37, C:0.14, G:0.00, T:0.49
Consensus pattern (20 bp):
ATAAATTTTAATTTTCTAAC
Found at i:75685870 original size:7 final size:7
Alignment explanation
Indices: 75685860--75685904 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
75685850 AAGAGAGAAT
*
75685860 GATGATG
1 GATGAGG
75685867 GATGAGG
1 GATGAGG
75685874 GATGAGG
1 GATGAGG
*
75685881 GATAAGG
1 GATGAGG
**
75685888 GATGAAT
1 GATGAGG
75685895 GATGAGG
1 GATGAGG
75685902 GAT
1 GAT
75685905 CAAATGAGGT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.33, C:0.00, G:0.47, T:0.20
Consensus pattern (7 bp):
GATGAGG
Found at i:75686870 original size:16 final size:16
Alignment explanation
Indices: 75686849--75686882 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
75686839 TATATGAGTA
75686849 TGCATGAATCCAGGTC
1 TGCATGAATCCAGGTC
75686865 TGCATGAATCCAGGTC
1 TGCATGAATCCAGGTC
75686881 TG
1 TG
75686883 AAATATATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (16 bp):
TGCATGAATCCAGGTC
Found at i:75688680 original size:21 final size:19
Alignment explanation
Indices: 75688656--75688700 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 19
75688646 TGTGAATTCG
*
75688656 ATTAAATTTTTGTTGAAAATA
1 ATTAAATTTTT-AT-AAAATA
75688677 ATT-AATTTTTATAAAATA
1 ATTAAATTTTTATAAAATA
75688695 ATTAAA
1 ATTAAA
75688701 GTGCACTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 9 0.41
19 3 0.14
20 7 0.32
21 3 0.14
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (19 bp):
ATTAAATTTTTATAAAATA
Found at i:75699985 original size:140 final size:139
Alignment explanation
Indices: 75699751--75700008 Score: 351
Period size: 140 Copynumber: 1.8 Consensus size: 139
75699741 GTCGATGCGA
* * * *
75699751 TGTCCCAGACCTGGTCTTACACTGACTATCATCTCGTAGCCGATACATGTCCCAGACATGTCTTA
1 TGTCCCAAACATGGTCTTACACTCACTATCATCTCGTAGCCAATACATGTCCCAGACATGTCTTA
* * *
75699816 CACTGGCTTATGCCTCAAGGTCGGCGCATGTCTCAGACATGTCTTACACTAGCACTCGTCTCAAT
66 CACTGGCTTA-GCATCAAGGTCGGCGCATGTCCCAGACATGTCTAACACTAGCACTCGTCTCAAT
75699881 ACCGATGCCT
130 ACCGATGCCT
* * *
75699891 TGTCCCAAACATGGTCTTACACTCACTGTCATCTCGTAGCCAATGCATGTCCCAGATATGTCTTA
1 TGTCCCAAACATGGTCTTACACTCACTATCATCTCGTAGCCAATACATGTCCCAGACATGTCTTA
*
75699956 CACTGGCTTA-CAT-AATGT-GGCCTATGCATGTCCCAGACATGTCTAACACTAGC
66 CACTGGCTTAGCATCAAGGTCGG-C---GCATGTCCCAGACATGTCTAACACTAGC
75700009 CAACAATAAC
Statistics
Matches: 103, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
136 2 0.02
137 5 0.05
138 2 0.02
140 94 0.91
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (139 bp):
TGTCCCAAACATGGTCTTACACTCACTATCATCTCGTAGCCAATACATGTCCCAGACATGTCTTA
CACTGGCTTAGCATCAAGGTCGGCGCATGTCCCAGACATGTCTAACACTAGCACTCGTCTCAATA
CCGATGCCT
Found at i:75709761 original size:13 final size:13
Alignment explanation
Indices: 75709739--75709785 Score: 85
Period size: 13 Copynumber: 3.6 Consensus size: 13
75709729 CAGACACACA
75709739 CCCGTGTCAATGG
1 CCCGTGTCAATGG
*
75709752 CCCATGTCAATGG
1 CCCGTGTCAATGG
75709765 CCCGTGTCAATGG
1 CCCGTGTCAATGG
75709778 CCCGTGTC
1 CCCGTGTC
75709786 CCTTACACGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.15, C:0.34, G:0.28, T:0.23
Consensus pattern (13 bp):
CCCGTGTCAATGG
Found at i:75712080 original size:39 final size:39
Alignment explanation
Indices: 75711988--75712129 Score: 212
Period size: 40 Copynumber: 3.6 Consensus size: 39
75711978 GGCTAATTCT
* * *
75711988 GGGCTAAGTCCCGAAGGCATTCGTGTGAGCTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-CC
*
75712028 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATACC
* *
75712067 GGGCTAAGTCCCGAAGGCATTTGTTCAAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-ACC
75712107 GGGCTAAGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
75712130 AGCTAGTGGC
Statistics
Matches: 94, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
39 35 0.37
40 59 0.63
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATACC
Found at i:75712143 original size:40 final size:40
Alignment explanation
Indices: 75711942--75712152 Score: 200
Period size: 40 Copynumber: 5.3 Consensus size: 40
75711932 TGTTCGGATG
* * *
75711942 ATAACCGGGCTATGTCCCG-AGAGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGTGCTAGTGACT
* * *
75711982 A-ATTCTGGGCTAAGTCCCGAAGGCATTCGTG-TGAGCT-ACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCT-AG-TGACT
* * * *
75712022 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
75712062 AT-ACCGGGCTAAGTCCCGAAGGCATTTGTTCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
75712101 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
75712141 ATATCC-GGCTAA
1 ATAACCGGGCTAA
75712153 ACTCCGAAGG
Statistics
Matches: 143, Mismatches: 20, Indels: 17
0.79 0.11 0.09
Matches are distributed among these distances:
39 44 0.31
40 95 0.66
41 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:75712162 original size:79 final size:79
Alignment explanation
Indices: 75711942--75712152 Score: 250
Period size: 79 Copynumber: 2.7 Consensus size: 79
75711932 TGTTCGGATG
* *
75711942 ATAACCGGGCTATGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATTCTGGGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGAGCTAGTGGCTATA-TC-CGGCTAAGTCCCGAAGG
*
75712005 CATTCGTGTGAGCTACT
63 CATTCGTGTAAGCTACT
* * * ***
75712022 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAAGTCCCGAAGGCA
* *
75712086 TTTGT-TCAAGTTACT
65 TTCGTGT-AAGCTACT
75712101 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGCTAA
75712153 ACTCCGAAGG
Statistics
Matches: 109, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
78 1 0.01
79 72 0.66
80 33 0.30
81 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGCTAAGTCCCGAAGGCAT
TCGTGTAAGCTACT
Found at i:75714123 original size:46 final size:48
Alignment explanation
Indices: 75714026--75714197 Score: 232
Period size: 47 Copynumber: 3.7 Consensus size: 48
75714016 TATTTCAAGT
75714026 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGC
* * *
75714074 CGATG-CATATCCCAGACAT-GTCTTACACTAGCACTCGTCA-C-AATA-C
1 CGATGCCATGTCCCAGACATGGTCTTACACT-G-ACT-ATCATCTCATAGC
*
75714120 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGC
75714168 CGATG-CATGTCCCAGACAT-GTCTTACACTG
1 CGATGCCATGTCCCAGACATGGTCTTACACTG
75714198 GCTTACATAA
Statistics
Matches: 109, Mismatches: 7, Indels: 18
0.81 0.05 0.13
Matches are distributed among these distances:
45 3 0.03
46 31 0.28
47 47 0.43
48 25 0.23
49 3 0.03
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGC
Found at i:75714134 original size:47 final size:47
Alignment explanation
Indices: 75714026--75714242 Score: 234
Period size: 46 Copynumber: 4.6 Consensus size: 47
75714016 TATTTCAAGT
75714026 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGC
1 CGATG-CATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGC
* * *
75714074 CGATGCATATCCCAGACAT-GTCTTACACTAGCACTCGTCA-C-AATA-C
1 CGATGCATGTCCCAGACATGGTCTTACACT-G-ACT-ATCATCTCATAGC
*
75714120 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGC
1 CGATG-CATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGC
* * * *
75714168 CGATGCATGTCCCAGACAT-GTCTTACACTGGCT-TACATAAT-GTGGC
1 CGATGCATGTCCCAGACATGGTCTTACACTGACTAT-CAT-CTCATAGC
*
75714214 CTATGCATGTCCCAGACAT-GTCTTACACT
1 CGATGCATGTCCCAGACATGGTCTTACACT
75714243 AGCCAACAAT
Statistics
Matches: 148, Mismatches: 11, Indels: 22
0.82 0.06 0.12
Matches are distributed among these distances:
45 4 0.03
46 68 0.46
47 48 0.32
48 25 0.17
49 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.27
Consensus pattern (47 bp):
CGATGCATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGC
Found at i:75714187 original size:94 final size:94
Alignment explanation
Indices: 75714026--75714196 Score: 324
Period size: 94 Copynumber: 1.8 Consensus size: 94
75714016 TATTTCAAGT
75714026 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGCCGATGCATATCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGCCGATGCATATCCCAGAC
75714091 ATGTCTTACACTAGCACTCGTCACAATAC
66 ATGTCTTACACTAGCACTCGTCACAATAC
* *
75714120 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGCCGATGCATATCCCAGAC
75714185 ATGTCTTACACT
66 ATGTCTTACACT
75714197 GGCTTACATA
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 75 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGCCGATGCATATCCCAGAC
ATGTCTTACACTAGCACTCGTCACAATAC
Found at i:75719625 original size:27 final size:27
Alignment explanation
Indices: 75719594--75719771 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
75719584 TAAATTGTAC
75719594 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
75719621 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75719647 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
75719675 GGCACTAAGTGTGCGAGTTCGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
75719703 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75719730 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
75719757 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
75719772 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:75719710 original size:82 final size:81
Alignment explanation
Indices: 75719595--75719750 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
75719585 AAATTGTACA
* * *
75719595 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
75719659 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
75719676 GCACTAAGTGTGCGAGTTCGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
75719741 TGCGAGTTGA
65 TGCGAATTGA
75719751 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:75719762 original size:82 final size:81
Alignment explanation
Indices: 75719591--75719771 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
75719581 GATTAAATTG
* * *
75719591 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
75719656 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
75719672 TGCGGCACTAAGTGTGCGAGTTCGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
75719736 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
75719754 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
75719772 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:75727720 original size:27 final size:27
Alignment explanation
Indices: 75727689--75727866 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
75727679 TAAATTGTAC
75727689 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
75727716 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75727742 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
75727770 GGCACTAAGTGTGCGAGTTCGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
75727798 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75727825 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
75727852 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
75727867 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:75727805 original size:82 final size:81
Alignment explanation
Indices: 75727690--75727845 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
75727680 AAATTGTACA
* * *
75727690 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
75727754 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
75727771 GCACTAAGTGTGCGAGTTCGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
75727836 TGCGAGTTGA
65 TGCGAATTGA
75727846 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:75727857 original size:82 final size:81
Alignment explanation
Indices: 75727686--75727866 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
75727676 GATTAAATTG
* * *
75727686 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
75727751 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
75727767 TGCGGCACTAAGTGTGCGAGTTCGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
75727831 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
75727849 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
75727867 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:75730554 original size:23 final size:23
Alignment explanation
Indices: 75730523--75730590 Score: 100
Period size: 23 Copynumber: 3.0 Consensus size: 23
75730513 AGAACTTTTA
*
75730523 ATCAAGAAGCTCACGAAGAGCCT
1 ATCAGGAAGCTCACGAAGAGCCT
75730546 ATCAGGAAGCTCACGAAGAGCCT
1 ATCAGGAAGCTCACGAAGAGCCT
* **
75730569 GTCAGGAAGCTCAATAAGAGCC
1 ATCAGGAAGCTCACGAAGAGCC
75730591 ATTTAATGGG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.37, C:0.25, G:0.25, T:0.13
Consensus pattern (23 bp):
ATCAGGAAGCTCACGAAGAGCCT
Found at i:75732691 original size:55 final size:53
Alignment explanation
Indices: 75732604--75732837 Score: 201
Period size: 55 Copynumber: 4.4 Consensus size: 53
75732594 ATTAGGGTTT
* *
75732604 AAGGATACCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGAC-ATTGGTAA-GTTTCTAAGGA
* * * *
75732659 GAGGATACCATGTAAGACCATGTCAAGACATGACATTGATAAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAAGTT--TCTAAGG-A
* * * * * *
75732715 AAGG-TCCCCTGTAAGACCATGCCAAGGCATGGCGTTGGTGAG-TTCATAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAAGTTTC-TAAGGA
* * * * *
75732767 AATGATACCATGTAAGACCATGTCGAGACCTGACAATGGTAAGTTTC--A--A
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAAGTTTCTAAGGA
* *
75732816 AACGATACCACGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
75732838 AAAATTCATG
Statistics
Matches: 144, Mismatches: 29, Indels: 18
0.75 0.15 0.09
Matches are distributed among these distances:
49 21 0.15
51 1 0.01
52 5 0.03
53 36 0.25
54 11 0.08
55 67 0.47
56 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAAGTTTCTAAGGA
Found at i:75732810 original size:108 final size:110
Alignment explanation
Indices: 75732614--75732811 Score: 276
Period size: 108 Copynumber: 1.8 Consensus size: 110
75732604 AAGGATACCA
**
75732614 TGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGTGAGGATACCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGAAAGGATACCATGTAAGACCA
*
75732679 TGTCAAGACATGACATTGATAAGTTACTATAAGGCAAAGGTCCCC
66 TGTCAAGACATGACAATGATAAGTTACTATAAGGCAAAGGTCCCC
* * * *
75732724 TGTAAGACCATGCCAAGGCATGGC-GTTGGTGA-G-TTCATAAGGAAATGATACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGAAAGGATACCATGTAAGACC
* * *
75732786 ATGTCGAGACCTGACAATGGTAAGTT
65 ATGTCAAGACATGACAATGATAAGTT
75732812 TCAAAACGAT
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.58
109 6 0.08
110 23 0.30
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGAAAGGATACCATGTAAGACCA
TGTCAAGACATGACAATGATAAGTTACTATAAGGCAAAGGTCCCC
Found at i:75738833 original size:20 final size:20
Alignment explanation
Indices: 75738791--75738833 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
75738781 TTATCTATGA
* *
75738791 ATAAATTTTCATTTTCTACC
1 ATAAATTTTAATTTTCTAAC
75738811 ATAAATTTTTAATTTTC-AAC
1 ATAAA-TTTTAATTTTCTAAC
75738831 ATA
1 ATA
75738834 TTCATCCATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.37, C:0.14, G:0.00, T:0.49
Consensus pattern (20 bp):
ATAAATTTTAATTTTCTAAC
Found at i:75741546 original size:7 final size:7
Alignment explanation
Indices: 75741536--75741580 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
75741526 AAGAGAGAAT
*
75741536 GATGATG
1 GATGAGG
75741543 GATGAGG
1 GATGAGG
75741550 GATGAGG
1 GATGAGG
*
75741557 GATAAGG
1 GATGAGG
**
75741564 GATGAAT
1 GATGAGG
75741571 GATGAGG
1 GATGAGG
75741578 GAT
1 GAT
75741581 CAAATGAGGT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.33, C:0.00, G:0.47, T:0.20
Consensus pattern (7 bp):
GATGAGG
Found at i:75742543 original size:16 final size:16
Alignment explanation
Indices: 75742522--75742555 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
75742512 TATATGAGTA
75742522 TGCATGAATCCAGGTC
1 TGCATGAATCCAGGTC
75742538 TGCATGAATCCAGGTC
1 TGCATGAATCCAGGTC
75742554 TG
1 TG
75742556 AAATATATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (16 bp):
TGCATGAATCCAGGTC
Found at i:75744350 original size:21 final size:19
Alignment explanation
Indices: 75744326--75744370 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 19
75744316 TGTGAATTCG
*
75744326 ATTAAATTTTTGTTGAAAATA
1 ATTAAATTTTT-AT-AAAATA
75744347 ATT-AATTTTTATAAAATA
1 ATTAAATTTTTATAAAATA
75744365 ATTAAA
1 ATTAAA
75744371 GTGCACTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 9 0.41
19 3 0.14
20 7 0.32
21 3 0.14
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (19 bp):
ATTAAATTTTTATAAAATA
Found at i:75762398 original size:173 final size:174
Alignment explanation
Indices: 75762083--75762405 Score: 513
Period size: 173 Copynumber: 1.9 Consensus size: 174
75762073 AAATTGTACA
* * * *
75762083 GCACTAAGTGTGCAAGTTTAAAGTATATGGTACTAAGTGTGCACGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCAAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTACTAAACACTATG
* * *
75762148 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTATGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
75762213 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
** * ** *
75762257 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCAAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTACTAAACACTATG
*
75762322 TGTGC-AACCCAGTATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
75762386 TTTTGGACAGCGGAAAAGGT
131 TTTTGGACAGCGGAAAAGGT
75762406 CAGTACCTTG
Statistics
Matches: 135, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
173 75 0.56
174 60 0.44
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (174 bp):
GCACTAAGTGTGCAAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:75765502 original size:26 final size:26
Alignment explanation
Indices: 75765473--75765525 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
75765463 CAGTCAAAAG
75765473 TATGAACAAAATGCATGGTTGTTTTA
1 TATGAACAAAATGCATGGTTGTTTTA
75765499 TATGAACAAAATGCATGGTTGTTTTA
1 TATGAACAAAATGCATGGTTGTTTTA
75765525 T
1 T
75765526 TTTATGTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.08, G:0.19, T:0.40
Consensus pattern (26 bp):
TATGAACAAAATGCATGGTTGTTTTA
Found at i:75772455 original size:21 final size:21
Alignment explanation
Indices: 75772429--75772483 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
75772419 TCTAGCTTCG
75772429 TGTGTTCAAGCTCCACGCCCA
1 TGTGTTCAAGCTCCACGCCCA
* *
75772450 TGTGTTCAAGCTCCATGCCCG
1 TGTGTTCAAGCTCCACGCCCA
75772471 TGTGTTCAAGCTC
1 TGTGTTCAAGCTC
75772484 TACTCCTGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.16, C:0.33, G:0.22, T:0.29
Consensus pattern (21 bp):
TGTGTTCAAGCTCCACGCCCA
Found at i:75772494 original size:21 final size:21
Alignment explanation
Indices: 75772427--75772494 Score: 84
Period size: 21 Copynumber: 3.2 Consensus size: 21
75772417 TGTCTAGCTT
*
75772427 CGTGTGTTCAAGCTCCACGCC
1 CGTGTGTTCAAGCTCCACTCC
*
75772448 CATGTGTTCAAGCTCCA-TGCC
1 CGTGTGTTCAAGCTCCACT-CC
*
75772469 CGTGTGTTCAAGCTCTACTCC
1 CGTGTGTTCAAGCTCCACTCC
*
75772490 TGTGT
1 CGTGT
75772495 TAATTTGGCA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
21 39 0.98
22 1 0.03
ACGTcount: A:0.15, C:0.32, G:0.22, T:0.31
Consensus pattern (21 bp):
CGTGTGTTCAAGCTCCACTCC
Found at i:75777291 original size:27 final size:27
Alignment explanation
Indices: 75777256--75777370 Score: 128
Period size: 27 Copynumber: 4.3 Consensus size: 27
75777246 TTTTTACTTA
*
75777256 AAAATGACCGAAATACCCCTATAGGGT
1 AAAATGACCGAAATACCCCTATAAGGT
* * *
75777283 AAAATGACCGAAACACCCCCACAAGGT
1 AAAATGACCGAAATACCCCTATAAGGT
*
75777310 AAAATGATCGAAATACCCC-AGT-AGGAT
1 AAAATGACCGAAATACCCCTA-TAAGG-T
*
75777337 AAAATGA-CTATAATACCCCTATAAGGT
1 AAAATGACCGA-AATACCCCTATAAGGT
75777364 AAAATGA
1 AAAATGA
75777371 ATGTTTTTCC
Statistics
Matches: 75, Mismatches: 8, Indels: 10
0.81 0.09 0.11
Matches are distributed among these distances:
26 6 0.08
27 65 0.87
28 4 0.05
ACGTcount: A:0.45, C:0.22, G:0.16, T:0.17
Consensus pattern (27 bp):
AAAATGACCGAAATACCCCTATAAGGT
Done.