Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 231 of 333
Found at i:76092201 original size:19 final size:20
Alignment explanation
Indices: 76092179--76092244 Score: 89
Period size: 20 Copynumber: 3.4 Consensus size: 20
76092169 AAGCTATGTG
76092179 TTATATGGATGAATTACTG-
1 TTATATGGATGAATTACTGT
* *
76092198 TTATAGGGATGAAGTACTGT
1 TTATATGGATGAATTACTGT
* *
76092218 TTATACGGATGAGTTACTGT
1 TTATATGGATGAATTACTGT
76092238 TTATATG
1 TTATATG
76092245 ATTGAGAGTG
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
19 17 0.43
20 23 0.57
ACGTcount: A:0.29, C:0.06, G:0.24, T:0.41
Consensus pattern (20 bp):
TTATATGGATGAATTACTGT
Found at i:76110199 original size:24 final size:24
Alignment explanation
Indices: 76110172--76110221 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
76110162 ACTATTTACT
76110172 AATATCAAATAATCAAAAATTCTC
1 AATATCAAATAATCAAAAATTCTC
* *
76110196 AATATCAAATAATTAAAGATTCTC
1 AATATCAAATAATCAAAAATTCTC
76110220 AA
1 AA
76110222 CACATGCTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.14, G:0.02, T:0.30
Consensus pattern (24 bp):
AATATCAAATAATCAAAAATTCTC
Found at i:76110492 original size:90 final size:91
Alignment explanation
Indices: 76110354--76110597 Score: 323
Period size: 90 Copynumber: 2.7 Consensus size: 91
76110344 CAAAAGTTAC
* * *
76110354 AGGTTAATACGCTACCAGATGGTTGTGAATGCACAACATATTTGTAGATAAGAGCTGGCCA-AAT
1 AGGTTAATACGCTGCCAGATGGTTGTGAATACACAACATATTTGTAGATAAGAGCTGGCCAGAAA
* *
76110418 GTAGGTGGATGAACCACTAGTGTTGT
66 ATAGGTGGATGAACCACCAGTGTTGT
* * *
76110444 AGGTTAATACACTGCTAGATGGTTGTGAATACACAATATATTTGTAGATAAGAGCT-GCCAGAAA
1 AGGTTAATACGCTGCCAGATGGTTGTGAATACACAACATATTTGTAGATAAGAGCTGGCCAGAAA
* *
76110508 ATATGTGGATGAACCACCAGTGTTTT
66 ATAGGTGGATGAACCACCAGTGTTGT
** * * * *
76110534 AGGTGCATATGTTGCCAAATGGTTGTGAATACACAACATAATTGTAGATAAGAGCT-GCCAGAAA
1 AGGTTAATACGCTGCCAGATGGTTGTGAATACACAACATATTTGTAGATAAGAGCTGGCCAGAAA
76110598 TTCTATGGAT
Statistics
Matches: 134, Mismatches: 19, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
89 4 0.03
90 130 0.97
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (91 bp):
AGGTTAATACGCTGCCAGATGGTTGTGAATACACAACATATTTGTAGATAAGAGCTGGCCAGAAA
ATAGGTGGATGAACCACCAGTGTTGT
Found at i:76110642 original size:90 final size:88
Alignment explanation
Indices: 76110365--76110642 Score: 249
Period size: 90 Copynumber: 3.1 Consensus size: 88
76110355 GGTTAATACG
* * *
76110365 CTACCAGATGGTTGTGAATGCACAACATATTTGTAGATAAGAGCTGGCC--AAATGTAGGTGGAT
1 CTACCAAATGGTTGTGAATACACAACATATTTGTAGATAAGAGCT-GCCAGAAATATA--TGGAT
*
76110428 GAACCACTAGTGTTGTAGGTTAATACA-
63 GAACCACAAGTGTTGTAGGTT-ATA-AT
* * * * *
76110455 CTGCTAGATGGTTGTGAATACACAATATATTTGTAGATAAGAGCTGCCAGAAAATATGTGGATGA
1 CTACCAAATGGTTGTGAATACACAACATATTTGTAGATAAGAGCTGCCAG-AAATATATGGATGA
* * *
76110520 ACCACCAGTGTTTTAGGTGCAT-AT
65 ACCACAAGTGTTGTAGGT-TATAAT
* * * * *
76110544 GTTGCCAAATGGTTGTGAATACACAACATAATTGTAGATAAGAGCTGCCAGAAATTCTATGGATT
1 -CTACCAAATGGTTGTGAATACACAACATATTTGTAGATAAGAGCTGCCAGAAA-TATATGGATG
** **
76110609 AACCACAAAAGTTGTAAATTATTAAT
64 AACCACAAGTGTTGTAGGTTA-TAAT
76110635 CTACCAAA
1 CTACCAAA
76110643 ACTTCCTTAT
Statistics
Matches: 153, Mismatches: 26, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
88 1 0.01
89 7 0.05
90 138 0.90
91 2 0.01
92 5 0.03
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (88 bp):
CTACCAAATGGTTGTGAATACACAACATATTTGTAGATAAGAGCTGCCAGAAATATATGGATGAA
CCACAAGTGTTGTAGGTTATAAT
Found at i:76114327 original size:16 final size:16
Alignment explanation
Indices: 76114306--76114339 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
76114296 TTAAAGCATA
76114306 TTATTGACTCGATTTC
1 TTATTGACTCGATTTC
* *
76114322 TTATTGATTTGATTTC
1 TTATTGACTCGATTTC
76114338 TT
1 TT
76114340 GTTTTTTGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.12, G:0.12, T:0.59
Consensus pattern (16 bp):
TTATTGACTCGATTTC
Found at i:76120462 original size:49 final size:51
Alignment explanation
Indices: 76120404--76120505 Score: 190
Period size: 51 Copynumber: 2.0 Consensus size: 51
76120394 TATTAATAAC
76120404 AGCACAAATTTAAAGAAAG-AA-AAAAAATTAATGATAGCTTGATGATTGG
1 AGCACAAATTTAAAGAAAGAAAGAAAAAATTAATGATAGCTTGATGATTGG
76120453 AGCACAAATTTAAAGAAAGAAAGAAAAAATTAATGATAGCTTGATGATTGG
1 AGCACAAATTTAAAGAAAGAAAGAAAAAATTAATGATAGCTTGATGATTGG
76120504 AG
1 AG
76120506 AAAAAGGTGG
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
49 19 0.37
50 2 0.04
51 30 0.59
ACGTcount: A:0.51, C:0.06, G:0.20, T:0.24
Consensus pattern (51 bp):
AGCACAAATTTAAAGAAAGAAAGAAAAAATTAATGATAGCTTGATGATTGG
Found at i:76122303 original size:27 final size:27
Alignment explanation
Indices: 76122265--76122324 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
76122255 GGTAAGTGAC
* **
76122265 GCCTATCTGGTAGGCTTGACTGGTAGA
1 GCCTATCTGGTAAGCGCGACTGGTAGA
*
76122292 GCCTATCTGGTAAGCGCGACTGGTGGA
1 GCCTATCTGGTAAGCGCGACTGGTAGA
76122319 GCCTAT
1 GCCTAT
76122325 ATGACAGACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.18, C:0.22, G:0.33, T:0.27
Consensus pattern (27 bp):
GCCTATCTGGTAAGCGCGACTGGTAGA
Found at i:76124587 original size:30 final size:30
Alignment explanation
Indices: 76124551--76124611 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
76124541 ACACGATATC
76124551 TTTCAATATCATCTGTCTTCTCGGCTACAT
1 TTTCAATATCATCTGTCTTCTCGGCTACAT
*
76124581 TTTCAATATCATCTGTTTTCTCGGCTACAT
1 TTTCAATATCATCTGTCTTCTCGGCTACAT
76124611 T
1 T
76124612 CTACAGGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.10, T:0.46
Consensus pattern (30 bp):
TTTCAATATCATCTGTCTTCTCGGCTACAT
Found at i:76125491 original size:18 final size:18
Alignment explanation
Indices: 76125468--76125518 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
76125458 TAATAGCCAG
*
76125468 TTATTCAGTAACGATAAA
1 TTATTCAGTAACAATAAA
* * *
76125486 TTATTCAATAATAATCAA
1 TTATTCAGTAACAATAAA
76125504 TTATTCAGTAACAAT
1 TTATTCAGTAACAAT
76125519 TTTTTTATGC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.45, C:0.12, G:0.06, T:0.37
Consensus pattern (18 bp):
TTATTCAGTAACAATAAA
Found at i:76125549 original size:18 final size:18
Alignment explanation
Indices: 76125523--76125586 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 18
76125513 AACAATTTTT
*
76125523 TTATGCAGTAGCAGTTAG
1 TTATTCAGTAGCAGTTAG
* ** *
76125541 TTATCCAGTAATAGTCAG
1 TTATTCAGTAGCAGTTAG
*
76125559 TTATTCAGTAGCAGTTAA
1 TTATTCAGTAGCAGTTAG
76125577 TTATTCAGTA
1 TTATTCAGTA
76125587 TCTTTTTTTA
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (18 bp):
TTATTCAGTAGCAGTTAG
Found at i:76126861 original size:20 final size:19
Alignment explanation
Indices: 76126827--76126866 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
76126817 CAAACCTTAA
76126827 TTCTCCCTTTTTCTTTCCT
1 TTCTCCCTTTTTCTTTCCT
*
76126846 TTCTCCTTTCTTTCTTTCCT
1 TTCTCCCTT-TTTCTTTCCT
76126866 T
1 T
76126867 CCCCTGCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (19 bp):
TTCTCCCTTTTTCTTTCCT
Found at i:76126931 original size:18 final size:18
Alignment explanation
Indices: 76126893--76126931 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
76126883 GCCTATTTTG
*
76126893 TTTCTTTTCTTTGTTTCA
1 TTTCTTTTCTTTCTTTCA
76126911 TTTCTTTTTCTTTCTTT-A
1 TTTC-TTTTCTTTCTTTCA
76126929 TTT
1 TTT
76126932 ACTATATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.05, C:0.15, G:0.03, T:0.77
Consensus pattern (18 bp):
TTTCTTTTCTTTCTTTCA
Found at i:76128479 original size:74 final size:76
Alignment explanation
Indices: 76128394--76128535 Score: 189
Period size: 78 Copynumber: 1.9 Consensus size: 76
76128384 AAAGTTTATT
* * *
76128394 TATTTAAATTGC-AAAAAATCC-TAAAATTAATAACTGAAATAGCAAAAAAGTCATTACATAAAT
1 TATTTAAATTGCAAAAAAAACCATAAAATTAATAAATAAAATAGCAAAAAAGTCATTACATAAAT
76128457 ACAAAGTTGAC
66 ACAAAGTTGAC
* * * *
76128468 TATTTAAATTGCAAAAAAAAAACCATAAAATTGATAAATAAAATGGCGAAAAATTCATTACATAA
1 TATTTAAATTGC--AAAAAAAACCATAAAATTAATAAATAAAATAGCAAAAAAGTCATTACATAA
76128533 ATA
64 ATA
76128536 TGAAGTTATT
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
74 12 0.21
77 8 0.14
78 37 0.65
ACGTcount: A:0.55, C:0.11, G:0.08, T:0.27
Consensus pattern (76 bp):
TATTTAAATTGCAAAAAAAACCATAAAATTAATAAATAAAATAGCAAAAAAGTCATTACATAAAT
ACAAAGTTGAC
Found at i:76128803 original size:33 final size:33
Alignment explanation
Indices: 76128730--76128803 Score: 78
Period size: 33 Copynumber: 2.2 Consensus size: 33
76128720 AACTTGAGCT
* * *
76128730 GGAAGTAGTGGAGTACGGCAGTGGATACAAGCC
1 GGAAGGAGTAGAGTACGACAGTGGATACAAGCC
* **
76128763 -GAGAGGAGTAGAGTACGACGGTGGATACGGGCC
1 GGA-AGGAGTAGAGTACGACAGTGGATACAAGCC
76128796 GGAAGGAG
1 GGAAGGAG
76128804 CGGAGTATTG
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
32 2 0.06
33 29 0.88
34 2 0.06
ACGTcount: A:0.30, C:0.14, G:0.45, T:0.12
Consensus pattern (33 bp):
GGAAGGAGTAGAGTACGACAGTGGATACAAGCC
Found at i:76129593 original size:23 final size:23
Alignment explanation
Indices: 76129563--76129615 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
76129553 CAGAACCGTG
*
76129563 TATGATTAACGAGTGGAAATACA
1 TATGATTAACGAGTGAAAATACA
76129586 TATGATTAACGAGTGAAAATACA
1 TATGATTAACGAGTGAAAATACA
76129609 TATGATT
1 TATGATT
76129616 GGTGACTAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.43, C:0.08, G:0.19, T:0.30
Consensus pattern (23 bp):
TATGATTAACGAGTGAAAATACA
Found at i:76131551 original size:48 final size:48
Alignment explanation
Indices: 76131441--76131674 Score: 290
Period size: 48 Copynumber: 4.9 Consensus size: 48
76131431 ATGAGAGCCC
* * * * * * * *
76131441 GTGTAAGACCATATCTGGGACGTGGCATCGGCATCCGAGATGAGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCGT-TGATATGTGTGCCA
*
76131490 GTGTAAGACCATGTCTGGGACATGGCATCAGCGTTGATACGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTGTGCCA
* *
76131538 GTGTAAGAGCATGTCTGGGACATGGCATC-GACGTTGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCAG-CGTTGATATGTGTGCCA
* ** *
76131586 GTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTGTGCCA
**
76131634 GTGTAAGACCATGTCTGGGACATGGCATCAGCACTGATATG
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATG
76131675 AGACTTCGTA
Statistics
Matches: 166, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
47 1 0.01
48 134 0.81
49 31 0.19
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.25
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTGTGCCA
Found at i:76131689 original size:48 final size:47
Alignment explanation
Indices: 76131440--76131701 Score: 228
Period size: 48 Copynumber: 5.4 Consensus size: 47
76131430 AATGAGAGCC
* * * * * *
76131440 CGTGTAAGACCATATCTGGGACGTGGCATCGGCATCCGAGATGAGAGC-
1 CGTGTAAGACCATGTCTGGGACATGGCATCAGCA-CTGATATGTGA-CT
**
76131488 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCGTTGATACGTGTG-C-
1 C-GTGTAAGACCATGTCTGGGACATGGCATCAGCACTGATA--TGTGACT
* *
76131536 CAGTGTAAGAGCATGTCTGGGACATGGCATC-G-ACGTTGATATGTGTGCT
1 C-GTGTAAGACCATGTCTGGGACATGGCATCAGCAC--TGATATGTG-ACT
* * * *
76131585 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGTGTGCT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAGCACTGATATGTG-ACT
* *
76131633 AGTGTAAGACCATGTCTGGGACATGGCATCAGCACTGATATGAGACTT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAGCACTGATATGTGAC-T
* *
76131681 CGTATAAGACCATATCTGGGA
1 CGTGTAAGACCATGTCTGGGA
76131702 TTTGGCGTCG
Statistics
Matches: 182, Mismatches: 21, Indels: 22
0.81 0.09 0.10
Matches are distributed among these distances:
46 4 0.02
47 2 0.01
48 142 0.78
49 30 0.16
50 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (47 bp):
CGTGTAAGACCATGTCTGGGACATGGCATCAGCACTGATATGTGACT
Found at i:76131689 original size:96 final size:94
Alignment explanation
Indices: 76131441--76131701 Score: 292
Period size: 96 Copynumber: 2.7 Consensus size: 94
76131431 ATGAGAGCCC
* * * *
76131441 GTGTAAGACCATATCTGGGACGTGGCATCGGCATCCGAGATGAGAGC-CAGTGTAAGACCATGTC
1 GTGTAAGACCATGTCTGGGACATGGCATC-GCA-CTGATATGAGA-CTC-GTGTAAGACCATGTC
**
76131505 TGGGACATGGCATCAGCGTTGATACGTGTGCCA
62 TGGGACATGGCATCAGCAATGATACGTGTGCCA
* * * *
76131538 GTGTAAGAGCATGTCTGGGACATGGCATCG-ACGTTGATATGTGTGCTAGTGTAAGACCATGTCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGCAC--TGATATGAG-ACTCGTGTAAGACCATGTCT
* * *
76131602 GGGACATGGCATCGGCAATGATATGTGTGCTA
63 GGGACATGGCATCAGCAATGATACGTGTGCCA
* *
76131634 GTGTAAGACCATGTCTGGGACATGGCATCAGCACTGATATGAGACTTCGTATAAGACCATATCTG
1 GTGTAAGACCATGTCTGGGACATGGCATC-GCACTGATATGAGAC-TCGTGTAAGACCATGTCTG
76131699 GGA
64 GGA
76131702 TTTGGCGTCG
Statistics
Matches: 138, Mismatches: 19, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
94 1 0.01
95 2 0.01
96 106 0.77
97 27 0.20
98 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (94 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGCACTGATATGAGACTCGTGTAAGACCATGTCTGGG
ACATGGCATCAGCAATGATACGTGTGCCA
Found at i:76131713 original size:144 final size:143
Alignment explanation
Indices: 76131441--76131701 Score: 339
Period size: 144 Copynumber: 1.8 Consensus size: 143
76131431 ATGAGAGCCC
*
76131441 GTGTAAGACCATATCTGGGACGTGGCATCGGCATCCGAGATGAGAGCCAGTGTAAGACCATGTCT
1 GTGTAAGACCATATCTGGGACATGGCATCGGCAT-CGAGATGAGAGCCAGTGTAAGACCATGTCT
** * * * *
76131506 GGGACATGGCATCAGCGTTGATACGTGTGCCAGTGTAAGAGCATGTCTGGGACATGGCATCGACG
65 GGGACATGGCATCAGCACTGATAC-TGAGCCAGTATAAGACCATATCTGGGACATGGCATCGACG
76131571 TTGATATGTGTGCTA
129 TTGATATGTGTGCTA
* * * * *
76131586 GTGTAAGACCATGTCTGGGACATGGCATCGGCAAT-GATATGTGTGCTAGTGTAAGACCATGTCT
1 GTGTAAGACCATATCTGGGACATGGCATCGGC-ATCGAGATGAGAGCCAGTGTAAGACCATGTCT
76131650 GGGACATGGCATCAGCACTGATA-TGAGACTTC-GTATAAGACCATATCTGGGA
65 GGGACATGGCATCAGCACTGATACTGAG-C--CAGTATAAGACCATATCTGGGA
76131702 TTTGGCGTCG
Statistics
Matches: 100, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
142 3 0.03
143 1 0.01
144 63 0.63
145 31 0.31
146 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (143 bp):
GTGTAAGACCATATCTGGGACATGGCATCGGCATCGAGATGAGAGCCAGTGTAAGACCATGTCTG
GGACATGGCATCAGCACTGATACTGAGCCAGTATAAGACCATATCTGGGACATGGCATCGACGTT
GATATGTGTGCTA
Found at i:76135380 original size:41 final size:40
Alignment explanation
Indices: 76135323--76135474 Score: 141
Period size: 41 Copynumber: 3.7 Consensus size: 40
76135313 GTCTAAATCT
*
76135323 GAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAGCC
1 GAGCTTAGTCTCGAAGGGCTTTTGAGCCAGTGCTAATA-CC
* *
76135364 GAGCTTAGTTTCGAAGGGCTTTTTAGAGCCAGTG-TCATAACC
1 GAGCTTAGTCTCGAAGGGC-TTTT-GAGCCAGTGCTAAT-ACC
* * *
76135406 G-GACTTAGT-TCCGAAAGGCCTTCGAGCCAGTAGTCTAAT-CC
1 GAG-CTTAGTCT-CGAAGGGCTTTTGAGCCAGT-G-CTAATACC
*
76135447 GAGCTTGGTCTCGAAGGGCTTTTGAGCC
1 GAGCTTAGTCTCGAAGGGCTTTTGAGCC
76135475 GGCACTAAGA
Statistics
Matches: 90, Mismatches: 11, Indels: 20
0.74 0.09 0.17
Matches are distributed among these distances:
40 8 0.09
41 44 0.49
42 25 0.28
43 13 0.14
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (40 bp):
GAGCTTAGTCTCGAAGGGCTTTTGAGCCAGTGCTAATACC
Found at i:76143797 original size:41 final size:40
Alignment explanation
Indices: 76143740--76143893 Score: 145
Period size: 41 Copynumber: 3.8 Consensus size: 40
76143730 GGGTCTAAAT
* *
76143740 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCTAGTGCTAATA
1 CCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGTGCTAATA
* *
76143780 GCCGAGCTTAGTTTCGAAGGGCTTTTTAGAGCCAGTG-TCATAA
1 -CCGAGCTTAGTCTCGAAGGGC-TTTT-GAGCCAGTGCTAAT-A
* *
76143823 CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGTGGTCTAAT-
1 CCGAG-CTTAGTCT-CGAAGGGCTTTTGAGCCAGT-G-CTAATA
*
76143864 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCC
1 CCGAGCTTAGTCTCGAAGGGCTTTTGAGCC
76143894 GGTACTAAGA
Statistics
Matches: 93, Mismatches: 10, Indels: 20
0.76 0.08 0.16
Matches are distributed among these distances:
40 8 0.09
41 47 0.51
42 26 0.28
43 12 0.13
ACGTcount: A:0.19, C:0.23, G:0.30, T:0.28
Consensus pattern (40 bp):
CCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGTGCTAATA
Found at i:76150472 original size:48 final size:48
Alignment explanation
Indices: 76150354--76150527 Score: 233
Period size: 48 Copynumber: 3.6 Consensus size: 48
76150344 ATGAGATCCT
* * * * ***
76150354 GTGTAAGACTATGTCTAGGACATGGCATCGGCATCCGACATGACCGCTA
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCGT-TGATATGTGTGCTA
* * *
76150403 GTGTAAGACCATGTCTGGGACATGACATCGGCGTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCGTTGATATGTGTGCTA
*
76150451 GTGTAAGACCATGTCTAGGACATGGCATCGGCGATGATATGTGTGCTA
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCGTTGATATGTGTGCTA
76150499 GTGTAAGACCATGTCT-GGACATGGCATCG
1 GTGTAAGACCATGTCTAGGACATGGCATCG
76150528 ACACCGATAT
Statistics
Matches: 111, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 13 0.12
48 68 0.61
49 30 0.27
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (48 bp):
GTGTAAGACCATGTCTAGGACATGGCATCGGCGTTGATATGTGTGCTA
Found at i:76150476 original size:97 final size:95
Alignment explanation
Indices: 76150354--76150527 Score: 260
Period size: 97 Copynumber: 1.8 Consensus size: 95
76150344 ATGAGATCCT
*
76150354 GTGTAAGACTATGTCTAGGACATGGCATCGGC-ATCCGACATGACCGCTAGTGTAAGACCATGTC
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCGAT--GACATGACCGCTAGTGTAAGACCATGTC
76150418 TGGGACATGACATCGGCGTTGATATGTGTGCCA
64 T-GGACATGACATCGGCGTTGATATGTGTGCCA
* ***
76150451 GTGTAAGACCATGTCTAGGACATGGCATCGGCGATGATATGTGTGCTAGTGTAAGACCATGTCTG
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCGATGACATGACCGCTAGTGTAAGACCATGTCTG
*
76150516 GACATGGCATCG
66 GACATGACATCG
76150528 ACACCGATAT
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
95 12 0.17
96 25 0.36
97 31 0.44
98 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (95 bp):
GTGTAAGACCATGTCTAGGACATGGCATCGGCGATGACATGACCGCTAGTGTAAGACCATGTCTG
GACATGACATCGGCGTTGATATGTGTGCCA
Found at i:76150553 original size:47 final size:47
Alignment explanation
Indices: 76150400--76150563 Score: 134
Period size: 48 Copynumber: 3.4 Consensus size: 47
76150390 GACATGACCG
* * * ** * *
76150400 CTAGTGTAAGACCATGTCTGGGACATGACATCGGCGTTGATATGTGTG
1 CTAGTATAAGACCATGTCT-GGACATGGCATCGACGACGATATGAGTA
* * * * * *
76150448 CCAGTGTAAGACCATGTCTAGGACATGGCATCGGCGATGATATGTGTG
1 CTAGTATAAGACCATGTCT-GGACATGGCATCGACGACGATATGAGTA
*
76150496 CTAGTGTAAGACCATGTCTGGACATGGCATCGAC-ACCGATATGAG-A
1 CTAGTATAAGACCATGTCTGGACATGGCATCGACGA-CGATATGAGTA
* *
76150542 CTTCGTATAAGACCATATCTGG
1 C-TAGTATAAGACCATGTCTGG
76150564 GATATGACGT
Statistics
Matches: 102, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
46 2 0.02
47 38 0.37
48 62 0.61
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (47 bp):
CTAGTATAAGACCATGTCTGGACATGGCATCGACGACGATATGAGTA
Found at i:76155665 original size:8 final size:8
Alignment explanation
Indices: 76155652--76155686 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
76155642 GTAGATCGGT
76155652 AAAAGCCG
1 AAAAGCCG
76155660 AAAAGCCG
1 AAAAGCCG
*
76155668 AAATGCCG
1 AAAAGCCG
*
76155676 AAAAGCTG
1 AAAAGCCG
76155684 AAA
1 AAA
76155687 GTTTGGTTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.51, C:0.20, G:0.23, T:0.06
Consensus pattern (8 bp):
AAAAGCCG
Found at i:76155929 original size:28 final size:29
Alignment explanation
Indices: 76155898--76155958 Score: 99
Period size: 29 Copynumber: 2.1 Consensus size: 29
76155888 GTGAGCATGA
76155898 ATAT-AAGGTGATTTGGGCCTAAT-GAGCC
1 ATATAAAGGTGATTTGGGCCTAATAG-GCC
76155926 ATATAAAGGTGATTTGGGCCTAATAGGCC
1 ATATAAAGGTGATTTGGGCCTAATAGGCC
76155955 ATAT
1 ATAT
76155959 GAATATGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
28 4 0.13
29 26 0.84
30 1 0.03
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (29 bp):
ATATAAAGGTGATTTGGGCCTAATAGGCC
Found at i:76155971 original size:29 final size:29
Alignment explanation
Indices: 76155910--76156044 Score: 125
Period size: 29 Copynumber: 4.7 Consensus size: 29
76155900 ATAAGGTGAT
* * ** *
76155910 TTGGGCCTAATGAGCCATATAAAGGTGAT
1 TTGGGCCTAATGGGCCATATGAATATGAA
*
76155939 TTGGGCCTAATAGGCCATATGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATATGAA
* * *
76155968 TTGGGCCTGATGGGCTATATGAATTTGAA
1 TTGGGCCTAATGGGCCATATGAATATGAA
* *
76155997 TTGGGCCTGACGGGCCATATG-A-ATGAGA
1 TTGGGCCTAATGGGCCATATGAATATGA-A
76156025 -TGGGCC-AAGTGGGCCATATG
1 TTGGGCCTAA-TGGGCCATATG
76156045 CATGTATGTA
Statistics
Matches: 89, Mismatches: 15, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
26 1 0.01
27 19 0.21
28 2 0.02
29 67 0.75
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATGAATATGAA
Found at i:76157266 original size:30 final size:29
Alignment explanation
Indices: 76157232--76157319 Score: 131
Period size: 30 Copynumber: 2.9 Consensus size: 29
76157222 CAGAGACAAG
76157232 GCCGTGTGTCTCGGTCGTGTGGGGAACACC
1 GCCGTGTGTCTCGG-CGTGTGGGGAACACC
76157262 GCCGTGTGTCTCGGCCGTGTGGGGAACACC
1 GCCGTGTGTCTCGG-CGTGTGGGGAACACC
* *
76157292 ACCCTGTGTCTCGGCTGTGTGGGGAACA
1 GCCGTGTGTCTCGGC-GTGTGGGGAACA
76157320 TGGCCTTAGC
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
29 1 0.02
30 53 0.98
ACGTcount: A:0.11, C:0.27, G:0.39, T:0.23
Consensus pattern (29 bp):
GCCGTGTGTCTCGGCGTGTGGGGAACACC
Found at i:76158797 original size:106 final size:105
Alignment explanation
Indices: 76158529--76158855 Score: 532
Period size: 106 Copynumber: 3.1 Consensus size: 105
76158519 CAAATTACAT
76158529 TAAAAAATCACAAAACAC-TAAACTAAACACTAACAATTTATATAACCTAATCATAAATTACTAA
1 TAAAAAATCACAAAACACAT-AACTAAACACTAACAATTTATATAACCTAATCATAAATTACTAA
*
76158593 CAAAATAATTATAAAATTATTTTTTTAAAAAAATACATTAC
65 CAAAATAACTATAAAATTATTTTTTTAAAAAAATACATTAC
* * * *
76158634 TAAAAAATTACAAAACACATTAC-AAACACTAACAATTTATATAATCTAATTATAAATTACTAAC
1 TAAAAAATCACAAAACACATAACTAAACACTAACAATTTATATAACCTAATCATAAATTACTAAC
**
76158698 AAAATAACTATAAAATTATTTTTTTTTAAAAATACATTAC
66 AAAATAACTATAAAATTATTTTTTTAAAAAAATACATTAC
*
76158738 TAAAAAAATCACAAAACACATAACTAAACACAAACAATTTATATAACCTAATCATAAATTACTAA
1 T-AAAAAATCACAAAACACATAACTAAACACTAACAATTTATATAACCTAATCATAAATTACTAA
76158803 CAAAATAACTATAAAATTATTTTTTTAAAAAAATTACATTAC
65 CAAAATAACTATAAAATTATTTTTTTAAAAAAA-TACATTAC
*
76158845 CAAAAAATCAC
1 TAAAAAATCAC
76158856 TAACAAAATA
Statistics
Matches: 203, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
104 77 0.38
105 39 0.19
106 79 0.39
107 8 0.04
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (105 bp):
TAAAAAATCACAAAACACATAACTAAACACTAACAATTTATATAACCTAATCATAAATTACTAAC
AAAATAACTATAAAATTATTTTTTTAAAAAAATACATTAC
Found at i:76158989 original size:60 final size:60
Alignment explanation
Indices: 76158914--76159032 Score: 211
Period size: 60 Copynumber: 2.0 Consensus size: 60
76158904 ATACTAAACT
* *
76158914 AAACACAACAGTTTATAACATAATCCTAAATTACTAATAAATTAATTTTAAAATAATTAC
1 AAACACAACAATTTATAACATAATCCTAAATTACTAAGAAATTAATTTTAAAATAATTAC
*
76158974 AAACACAACAATTTATAACATAATCCTAAATTACTAAGAAATTAATTTTAAAATGATTA
1 AAACACAACAATTTATAACATAATCCTAAATTACTAAGAAATTAATTTTAAAATAATTA
76159033 TAAAAAACAA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.52, C:0.13, G:0.03, T:0.33
Consensus pattern (60 bp):
AAACACAACAATTTATAACATAATCCTAAATTACTAAGAAATTAATTTTAAAATAATTAC
Found at i:76159217 original size:3 final size:3
Alignment explanation
Indices: 76159199--76159245 Score: 58
Period size: 3 Copynumber: 15.3 Consensus size: 3
76159189 ACATTACTTT
* * *
76159199 TTC TTT TTC TTTC TTC TTC TTC TTC TTC TTC TTT TTT TTC TTC TTC
1 TTC TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
76159245 T
1 T
76159246 CATTTCTCTC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
3 36 0.92
4 3 0.08
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (3 bp):
TTC
Found at i:76159270 original size:27 final size:27
Alignment explanation
Indices: 76159204--76159271 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 27
76159194 ACTTTTTCTT
* *
76159204 TTTCTTTCTTCTTCTTCTTCTTCTTCT
1 TTTCTTTCTTCTTCTTCATCTTCTTCC
*
76159231 TTTTTTTCTTCTTC-TCAT-TTCTCTCC
1 TTTCTTTCTTCTTCTTCATCTTCT-TCC
76159257 TTTCTTTCTCTCTTC
1 TTTCTTTCT-TCTTC
76159272 CAGTGTTTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
25 4 0.11
26 13 0.37
27 18 0.51
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (27 bp):
TTTCTTTCTTCTTCTTCATCTTCTTCC
Found at i:76159441 original size:27 final size:27
Alignment explanation
Indices: 76159395--76159448 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
76159385 GCAGGGGGGT
*
76159395 AGTGACGCCTACCTGTCAGCCGCGACC
1 AGTGACGCCTACCTGACAGCCGCGACC
* *
76159422 AGTGGCGCCTATCTGACAGCCGCGACC
1 AGTGACGCCTACCTGACAGCCGCGACC
76159449 TGTCTCGGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.19, C:0.39, G:0.28, T:0.15
Consensus pattern (27 bp):
AGTGACGCCTACCTGACAGCCGCGACC
Found at i:76159542 original size:23 final size:22
Alignment explanation
Indices: 76159514--76159567 Score: 65
Period size: 25 Copynumber: 2.4 Consensus size: 22
76159504 TATATATTTA
76159514 AATATTTTTTAAAATAAAATAAT
1 AATATTTTTTAAAATAAAA-AAT
*
76159537 AATATTTTATTTAAAGTAAAAAAT
1 AATA-TTT-TTTAAAATAAAAAAT
76159561 -ATATTTT
1 AATATTTT
76159568 AATATAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
21 1 0.04
22 3 0.11
23 7 0.25
24 6 0.21
25 11 0.39
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (22 bp):
AATATTTTTTAAAATAAAAAAT
Found at i:76159575 original size:24 final size:25
Alignment explanation
Indices: 76159514--76159576 Score: 71
Period size: 23 Copynumber: 2.6 Consensus size: 25
76159504 TATATATTTA
76159514 AATATTTT-T-TAAAATAAAATAAT
1 AATATTTTATATAAAATAAAATAAT
* *
76159537 AATATTTTATTTAAAGTAAAA-AAT
1 AATATTTTATATAAAATAAAATAAT
76159561 -ATATTTTAATATAAAA
1 AATATTTT-ATATAAAA
76159577 AAGTGGTTGC
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
23 15 0.44
24 10 0.29
25 9 0.26
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (25 bp):
AATATTTTATATAAAATAAAATAAT
Found at i:76160036 original size:25 final size:26
Alignment explanation
Indices: 76160008--76160058 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
76159998 TGTGAATAAA
*
76160008 AATAATAGC-TTAAGTGTTGAAAGTT
1 AATAATAGCTTTAAGTATTGAAAGTT
76160033 AATAATAGCTTTAAGTATTGAAAGTT
1 AATAATAGCTTTAAGTATTGAAAGTT
76160059 CTTGTAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.41, C:0.04, G:0.18, T:0.37
Consensus pattern (26 bp):
AATAATAGCTTTAAGTATTGAAAGTT
Found at i:76160329 original size:11 final size:10
Alignment explanation
Indices: 76160310--76160370 Score: 52
Period size: 11 Copynumber: 5.8 Consensus size: 10
76160300 GTTGATCATT
76160310 AAAATTATAG
1 AAAATTATAG
76160320 AAATATTATA-
1 AAA-ATTATAG
*
76160330 AAAAATATAG
1 AAAATTATAG
76160340 AAAAAGTTATAG
1 -AAAA-TTATAG
* *
76160352 AAAATAATACA
1 AAAATTATA-G
76160363 AAAATTAT
1 AAAATTAT
76160371 TAAAATGATA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
9 5 0.12
10 10 0.24
11 21 0.51
12 5 0.12
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.28
Consensus pattern (10 bp):
AAAATTATAG
Found at i:76160335 original size:21 final size:21
Alignment explanation
Indices: 76160310--76160398 Score: 76
Period size: 21 Copynumber: 4.3 Consensus size: 21
76160300 GTTGATCATT
*
76160310 AAAATTATAGAAATATTATAA
1 AAAATTATAGAAAAATTATAA
*
76160331 AAAA-TATAGAAAAAGTTATAG
1 AAAATTATAGAAAAA-TTATAA
* * *
76160352 AAAATAATACAAAAATTAT-T
1 AAAATTATAGAAAAATTATAA
* *
76160372 AAAATGATA-AAAATTTATAA
1 AAAATTATAGAAAAATTATAA
76160392 AATAATT
1 AA-AATT
76160399 TGTAATTTTA
Statistics
Matches: 55, Mismatches: 9, Indels: 8
0.76 0.12 0.11
Matches are distributed among these distances:
19 8 0.15
20 19 0.35
21 20 0.36
22 8 0.15
ACGTcount: A:0.63, C:0.01, G:0.06, T:0.30
Consensus pattern (21 bp):
AAAATTATAGAAAAATTATAA
Found at i:76160392 original size:18 final size:20
Alignment explanation
Indices: 76160307--76160397 Score: 62
Period size: 20 Copynumber: 4.5 Consensus size: 20
76160297 CTTGTTGATC
* * *
76160307 ATTAAAATTATAGAAATATT
1 ATTAAAATAATACAAAAATT
* *
76160327 A-TAAAAAATATAGAAAAAGTT
1 ATTAAAATA-ATACAAAAA-TT
*
76160348 ATAGAAAATAATACAAAAATT
1 AT-TAAAATAATACAAAAATT
* *
76160369 ATTAAAATGATA-AAAATTT
1 ATTAAAATAATACAAAAATT
76160388 A-TAAAATAAT
1 ATTAAAATAAT
76160398 TTGTAATTTT
Statistics
Matches: 57, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
18 8 0.14
19 12 0.21
20 17 0.30
21 7 0.12
22 8 0.14
23 5 0.09
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.31
Consensus pattern (20 bp):
ATTAAAATAATACAAAAATT
Found at i:76161990 original size:26 final size:26
Alignment explanation
Indices: 76161961--76162024 Score: 65
Period size: 31 Copynumber: 2.3 Consensus size: 26
76161951 TCAAGAATAT
*
76161961 TTAAATTTAAATAATTAAAAAATCAA
1 TTAAATTAAAATAATTAAAAAATCAA
*
76161987 TTAAATCAAAATAAAATAATTAAAAAATTAA
1 TTAAAT-----TAAAATAATTAAAAAATCAA
76162018 TTAAATT
1 TTAAATT
76162025 CTTCTCATCA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
26 7 0.23
31 24 0.77
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (26 bp):
TTAAATTAAAATAATTAAAAAATCAA
Found at i:76162552 original size:13 final size:13
Alignment explanation
Indices: 76162528--76162552 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76162518 ACTATATACC
76162528 TATATTATATATA
1 TATATTATATATA
76162541 TATATTATATAT
1 TATATTATATAT
76162553 TTAGATATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TATATTATATATA
Found at i:76162736 original size:76 final size:78
Alignment explanation
Indices: 76162656--76162816 Score: 299
Period size: 76 Copynumber: 2.1 Consensus size: 78
76162646 ATTGAATATA
76162656 ATTAAAATATATTAATGTATTAACAACTCAAATATGATAAGAAAA-TTT-TATATCATAATTAAG
1 ATTAAAATATATTAATGTATTAACAACTCAAATATGATAAGAAAATTTTATATATCATAATTAAG
76162719 GAATTTATACAAT
66 GAATTTATACAAT
*
76162732 ATTAAAATATATTAATGTATTAACAATTCAAATATGATAAGAAAATTTTATATATCATAATTAAG
1 ATTAAAATATATTAATGTATTAACAACTCAAATATGATAAGAAAATTTTATATATCATAATTAAG
76162797 GAATTTATACAAT
66 GAATTTATACAAT
76162810 ATTAAAA
1 ATTAAAA
76162817 AAATGATATT
Statistics
Matches: 82, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
76 44 0.54
77 3 0.04
78 35 0.43
ACGTcount: A:0.51, C:0.06, G:0.06, T:0.37
Consensus pattern (78 bp):
ATTAAAATATATTAATGTATTAACAACTCAAATATGATAAGAAAATTTTATATATCATAATTAAG
GAATTTATACAAT
Found at i:76165905 original size:42 final size:42
Alignment explanation
Indices: 76165854--76166002 Score: 174
Period size: 42 Copynumber: 3.5 Consensus size: 42
76165844 TGAGTTTACG
*
76165854 TGTAAGACCATATCTGGGATATGGCATCGTTATGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
* * * * * *
76165896 TGTAGGACCATGTCTGGGACATGGCATCAATATGAGA-ATCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
* * **
76165937 TGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATTTCA
*
76165980 TATAAGACCATATCTGGGATATG
1 TGTAAGACCATATCTGGGATATG
76166003 CATTGGTATG
Statistics
Matches: 86, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
41 18 0.21
42 49 0.57
43 19 0.22
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
Found at i:76186392 original size:40 final size:40
Alignment explanation
Indices: 76186294--76186596 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
76186284 TCCTCGTTCA
* * * * *
76186294 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
76186333 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
76186373 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
76186413 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
76186453 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
76186493 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
76186533 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
76186573 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
76186597 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 195 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:76188527 original size:40 final size:40
Alignment explanation
Indices: 76188433--76188577 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
76188423 TACTCGAATG
*
76188433 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
76188474 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
76188514 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
76188554 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
76188578 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:76193196 original size:27 final size:27
Alignment explanation
Indices: 76193166--76193343 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
76193156 ATATTGAGTC
* * * *
76193166 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
76193193 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
76193220 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
76193248 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
76193275 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
76193302 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
76193329 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76193344 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:76193305 original size:82 final size:81
Alignment explanation
Indices: 76193187--76193342 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
76193177 TGCTATATAA
* *
76193187 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
76193252 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
76193269 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
76193333 CACTTAGTGC
65 CACTTAGTGC
76193343 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:76195259 original size:27 final size:27
Alignment explanation
Indices: 76195224--76195294 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
76195214 GGATGGCAGC
*
76195224 ATTATTGAAATACCCTTGTAGGGTAGA
1 ATTACTGAAATACCCTTGTAGGGTAGA
* *
76195251 ATTACTGAAATGCCCCTGTAGGGTAGA
1 ATTACTGAAATACCCTTGTAGGGTAGA
**
76195278 ATTACCAAAATACCCTT
1 ATTACTGAAATACCCTT
76195295 AATTTACAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (27 bp):
ATTACTGAAATACCCTTGTAGGGTAGA
Found at i:76195318 original size:27 final size:26
Alignment explanation
Indices: 76195296--76195535 Score: 266
Period size: 27 Copynumber: 8.9 Consensus size: 26
76195286 AATACCCTTA
76195296 ATTTACAAAATTATCGTTTTACCCTCG
1 ATTTACAAAATTA-CGTTTTACCCTCG
*
76195323 ATTTACAGAATTACCGTTTTACCCTCG
1 ATTTACAAAATTA-CGTTTTACCCTCG
*
76195350 ATTTACAAAATTATTGTTTTACCCTCG
1 ATTTACAAAATTA-CGTTTTACCCTCG
76195377 ATTTACAAAATTAC-TATCTTACCCTCG
1 ATTTACAAAATTACGT-T-TTACCCTCG
* * *
76195404 ATTTAAAAAATTACTATTTTATCCTCG
1 ATTTACAAAATTAC-GTTTTACCCTCG
* *
76195431 ATTTATAGAATTATCGTTTTACCCTCG
1 ATTTACAAAATTA-CGTTTTACCCTCG
*
76195458 ATTTACAGAATTACTGTTTTACCCTCG
1 ATTTACAAAATTAC-GTTTTACCCTCG
* * *
76195485 ATTTACAGAATTACCATTTTACCCTCA
1 ATTTACAAAATTA-CGTTTTACCCTCG
* *
76195512 ATTTATAAAATTACCATTTTACCC
1 ATTTACAAAATTA-CGTTTTACCC
76195536 CTAGGGTGTT
Statistics
Matches: 189, Mismatches: 17, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
25 1 0.01
26 2 0.01
27 182 0.96
28 3 0.02
29 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.41
Consensus pattern (26 bp):
ATTTACAAAATTACGTTTTACCCTCG
Found at i:76195333 original size:54 final size:53
Alignment explanation
Indices: 76195296--76195535 Score: 300
Period size: 54 Copynumber: 4.4 Consensus size: 53
76195286 AATACCCTTA
*
76195296 ATTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCG
1 ATTTACAAAATTA-CGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCG
* * * *
76195350 ATTTACAAAATTATTGTTTTACCCTCGATTTACAAAATTACTATCTTACCCTCG
1 ATTTACAAAATTA-CGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCG
* * * * * *
76195404 ATTTAAAAAATTACTATTTTATCCTCGATTTATAGAATTATCGTTTTACCCTCG
1 ATTTACAAAATTAC-GTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCG
* *
76195458 ATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCA
1 ATTTACAAAATTAC-GTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCG
* *
76195512 ATTTATAAAATTACCATTTTACCC
1 ATTTACAAAATTA-CGTTTTACCC
76195536 CTAGGGTGTT
Statistics
Matches: 158, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
54 157 0.99
55 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.41
Consensus pattern (53 bp):
ATTTACAAAATTACGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCG
Found at i:76195373 original size:81 final size:80
Alignment explanation
Indices: 76195296--76195535 Score: 329
Period size: 81 Copynumber: 3.0 Consensus size: 80
76195286 AATACCCTTA
* *
76195296 ATTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAAT
1 ATTTACAAAATTA-CGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAAT
*
76195361 TATTGTTTTACCCTCG
65 TATCGTTTTACCCTCG
* * * * *
76195377 ATTTACAAAATTAC-TATCTTACCCTCGATTTAAAAAATTACTATTTTATCCTCGATTTATAGAA
1 ATTTACAAAATTACGT-T-TTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAA
76195441 TTATCGTTTTACCCTCG
64 TTATCGTTTTACCCTCG
* *
76195458 ATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTATAAAAT
1 ATTTACAAAATTAC-GTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAAT
* *
76195523 TACCATTTTACCC
65 TATCGTTTTACCC
76195536 CTAGGGTGTT
Statistics
Matches: 138, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
79 1 0.01
80 2 0.01
81 133 0.96
82 1 0.01
83 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.41
Consensus pattern (80 bp):
ATTTACAAAATTACGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATT
ATCGTTTTACCCTCG
Found at i:76195814 original size:27 final size:26
Alignment explanation
Indices: 76195770--76195820 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
76195760 CTCGCTGCAA
*
76195770 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
76195797 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
76195821 AGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:76195863 original size:67 final size:67
Alignment explanation
Indices: 76195755--76195926 Score: 290
Period size: 67 Copynumber: 2.6 Consensus size: 67
76195745 AAGTGTTCTG
*
76195755 GCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAATATC
1 GCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCAAAATATC
76195820 TA
66 TA
*
76195822 GCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTTACTTCGTCAAAATATC
1 GCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCAAAATATC
*
76195887 TG
66 TA
* * *
76195889 GCAGCCTCGCTGCAATTTGGTGGCTTCGTCACATATAT
1 GCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATAT
76195927 ATTTGATCTG
Statistics
Matches: 99, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 99 1.00
ACGTcount: A:0.19, C:0.28, G:0.22, T:0.31
Consensus pattern (67 bp):
GCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCAAAATATC
TA
Found at i:76196138 original size:31 final size:31
Alignment explanation
Indices: 76196103--76196179 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 31
76196093 TTGCATGCAC
* * * *
76196103 ATTCTGATTTTGATTATGTTACCTGATACTG
1 ATTCTGATTCTAATTATGTCACCTAATACTG
* *
76196134 ATTCTGATTCTAATTCTGTCACCTAATTCTG
1 ATTCTGATTCTAATTATGTCACCTAATACTG
*
76196165 ATTCTAATTCTAATT
1 ATTCTGATTCTAATT
76196180 CTGATTCTGT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.25, C:0.17, G:0.10, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTAATTATGTCACCTAATACTG
Found at i:76196142 original size:6 final size:6
Alignment explanation
Indices: 76196103--76196224 Score: 70
Period size: 6 Copynumber: 19.8 Consensus size: 6
76196093 TTGCATGCAC
* * * *
76196103 ATTCTG ATTTTG ATTATG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
76196152 -TCACCTA ATTCTG ATTCTA ATTCTA ATTCTG ATTCTG -TCACCTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* *
76196202 ATTCTG ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCT
76196225 AGTTTTGATA
Statistics
Matches: 88, Mismatches: 19, Indels: 18
0.70 0.15 0.14
Matches are distributed among these distances:
5 4 0.05
6 74 0.84
7 7 0.08
8 3 0.03
ACGTcount: A:0.21, C:0.19, G:0.11, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:76196166 original size:37 final size:37
Alignment explanation
Indices: 76196125--76196212 Score: 131
Period size: 37 Copynumber: 2.4 Consensus size: 37
76196115 ATTATGTTAC
* *
76196125 CTGATACTGATTCTGATTCTAATTCTGTCACCTAATT
1 CTGATTCTGATTCTAATTCTAATTCTGTCACCTAATT
* * *
76196162 CTGATTCTAATTCTAATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTAATTCTAATTCTGTCACCTAATT
76196199 CTGATTCTGATTCT
1 CTGATTCTGATTCT
76196213 CATTTTGATT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.45
Consensus pattern (37 bp):
CTGATTCTGATTCTAATTCTAATTCTGTCACCTAATT
Found at i:76196222 original size:37 final size:36
Alignment explanation
Indices: 76196103--76196224 Score: 128
Period size: 37 Copynumber: 3.4 Consensus size: 36
76196093 TTGCATGCAC
* * *
76196103 ATTCTGATTTTGATTATGTTACCTGATACTGATTCTG
1 ATTCT-ATTTTGATTCTGTCACCTGATTCTGATTCTG
* *
76196140 ATTCTA-----ATTCTGTCACCTAATTCTGATTCTA
1 ATTCTATTTTGATTCTGTCACCTGATTCTGATTCTG
*
76196171 ATTCTAATTCTGATTCTGTCACCTGATTCTGATTCTG
1 ATTCT-ATTTTGATTCTGTCACCTGATTCTGATTCTG
76196208 ATTCTCATTTTGATTCT
1 ATTCT-ATTTTGATTCT
76196225 AGTTTTGATA
Statistics
Matches: 70, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
31 25 0.36
32 1 0.01
36 1 0.01
37 43 0.61
ACGTcount: A:0.21, C:0.19, G:0.11, T:0.48
Consensus pattern (36 bp):
ATTCTATTTTGATTCTGTCACCTGATTCTGATTCTG
Found at i:76197807 original size:27 final size:27
Alignment explanation
Indices: 76197776--76197953 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
76197766 TATATTGAGC
* *
76197776 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
76197803 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
76197830 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
76197858 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
76197885 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
76197912 CGCACACTTAGTACAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
76197939 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76197954 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:76197915 original size:82 final size:81
Alignment explanation
Indices: 76197797--76197952 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
76197787 TGCTATATAA
* * *
76197797 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTACAACATAGTCAAA-TCGCA
76197862 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
76197879 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTACAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTACAACATAGTCAAATCGCA
76197943 CACTTAGTGC
65 CACTTAGTGC
76197953 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 16 0.25
82 49 0.75
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTACAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:76198449 original size:12 final size:12
Alignment explanation
Indices: 76198432--76198457 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
76198422 ATGGCATACT
76198432 TATGTATATATA
1 TATGTATATATA
76198444 TATGTATATATA
1 TATGTATATATA
76198456 TA
1 TA
76198458 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:76205888 original size:27 final size:27
Alignment explanation
Indices: 76205858--76206035 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
76205848 ATATTGAGCC
* *
76205858 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
76205885 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
76205912 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
76205940 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
76205967 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
76205994 CGCACACTTAGTACAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
76206021 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76206036 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:76205997 original size:82 final size:81
Alignment explanation
Indices: 76205879--76206034 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
76205869 TGCTATATAA
* * * *
76205879 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTACAACATAGTC-GAATCGCA
76205944 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
76205961 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTACAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTACAACATAGTCGAATCGCA
76206025 CACTTAGTGC
65 CACTTAGTGC
76206035 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTACAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:76206537 original size:12 final size:12
Alignment explanation
Indices: 76206520--76206546 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
76206510 ATGGCATACT
76206520 TATGTATATATA
1 TATGTATATATA
76206532 TATGTATATATA
1 TATGTATATATA
76206544 TAT
1 TAT
76206547 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:76208251 original size:45 final size:45
Alignment explanation
Indices: 76208201--76208286 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
76208191 CCAAAACATG
*
76208201 TGTCACATATATCACGAACTCAGACCACAACTTAATGAGTTCGAA
1 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCGAA
*
76208246 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTT
1 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTT
76208287 TAGATTATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (45 bp):
TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCGAA
Found at i:76211377 original size:20 final size:20
Alignment explanation
Indices: 76211354--76211439 Score: 84
Period size: 20 Copynumber: 4.3 Consensus size: 20
76211344 GGGGCACTAG
* *
76211354 AGTGCAATCAGGGGCATCGA
1 AGTGCAAACAGGGGCACCGA
*
76211374 AGTGCAAACA-GGGCACCAA
1 AGTGCAAACAGGGGCACCGA
* * *
76211393 AGTGTAAAAAAGGGCACCGA
1 AGTGCAAACAGGGGCACCGA
* **
76211413 AGTGCAATCAGGGGCATTGA
1 AGTGCAAACAGGGGCACCGA
76211433 AGTGCAA
1 AGTGCAA
76211440 CCAGTATAAG
Statistics
Matches: 53, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
19 15 0.28
20 38 0.72
ACGTcount: A:0.37, C:0.19, G:0.31, T:0.13
Consensus pattern (20 bp):
AGTGCAAACAGGGGCACCGA
Found at i:76214953 original size:43 final size:43
Alignment explanation
Indices: 76214892--76215240 Score: 305
Period size: 43 Copynumber: 8.2 Consensus size: 43
76214882 GAAAAAATGA
* * *
76214892 CGCTATAGAACATGACCTTTAGCGGCTTTTTTCCCACAAACGC
1 CGCTAAAGAACATGACCTTTAGCGGCTCTTTTCCCAAAAACGC
* * * *
76214935 CGCTAAAGAACATGACCTTTAGCGGCGCTTTCCCCATAAATGC
1 CGCTAAAGAACATGACCTTTAGCGGCTCTTTTCCCAAAAACGC
* * * * *
76214978 CGCTAAAGAACAAGACCTTTAACGTCACTTATCCCAAAAACGC
1 CGCTAAAGAACATGACCTTTAGCGGCTCTTTTCCCAAAAACGC
*
76215021 CGCTAAAGAACATGACCTTTAGCGGCTCTTTTTCC-AAAACGC
1 CGCTAAAGAACATGACCTTTAGCGGCTCTTTTCCCAAAAACGC
* * *
76215063 CGCTAAAGACCATGACTTTTAGCGGCTCTTTT-ACAAAAACGC
1 CGCTAAAGAACATGACCTTTAGCGGCTCTTTTCCCAAAAACGC
* * * * *
76215105 CGCTAGAGAACATGACCTTTAGTAGCGCTC-TCT-CTACAAACGC
1 CGCTAAAGAACATGACCTTTAG-CG-GCTCTTTTCCCAAAAACGC
* * * **** *
76215148 CGCTAAAGAACCTAACTTTTAATAACGCTTTT-CCAAAAACGC
1 CGCTAAAGAACATGACCTTTAGCGGCTCTTTTCCCAAAAACGC
* * ** * *
76215190 CACTAAA-AGTCATGTTCTTTAGCGACGCTTTTCCCAAAAACGC
1 CGCTAAAGA-ACATGACCTTTAGCGGCTCTTTTCCCAAAAACGC
*
76215233 CACTAAAG
1 CGCTAAAG
76215241 TCATGAAAAA
Statistics
Matches: 246, Mismatches: 53, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
41 4 0.02
42 93 0.38
43 145 0.59
44 4 0.02
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.25
Consensus pattern (43 bp):
CGCTAAAGAACATGACCTTTAGCGGCTCTTTTCCCAAAAACGC
Found at i:76215902 original size:23 final size:23
Alignment explanation
Indices: 76215857--76216525 Score: 372
Period size: 23 Copynumber: 29.3 Consensus size: 23
76215847 ACATATACTA
*
76215857 AATTT-CAGCAAC-TAAACAATTC
1 AATTTGCAGC-ACTTAAACACTTC
* * *
76215879 AGTTTGCAGTACTTAAAAACTTC
1 AATTTGCAGCACTTAAACACTTC
* *
76215902 AATTTGCAACACTTTAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* *
76215925 AATTTACAGCATTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
*
76215948 AATTTGCAGCACTTTAACA-TCTC
1 AATTTGCAGCACTTAAACACT-TC
** * * * * *
76215971 AATTAACAACATTTATACTCCTC
1 AATTTGCAGCACTTAAACACTTC
* * *
76215994 AA-TTACATCGA-TAAAACA-TCTC
1 AATTTGCAGC-ACTTAAACACT-TC
*
76216016 AATTTCCAGCAAC-TAAACACTTC
1 AATTTGCAGC-ACTTAAACACTTC
* *
76216039 AATTTGTAGTACTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* * * *
76216062 AATTTACAACATTTAAGCACTTC
1 AATTTGCAGCACTTAAACACTTC
* *
76216085 AATTTACAGCATTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* * * *
76216108 AATTTACAACA-TTTAACACTTA
1 AATTTGCAGCACTTAAACACTTC
* **
76216130 AATTTGTAGCACTTTTACA-TCTC
1 AATTTGCAGCACTTAAACACT-TC
** ** * * *
76216153 AATTAACATTATTTATACACCTC
1 AATTTGCAGCACTTAAACACTTC
* *
76216176 AA-TTACAATG-A-TAAAACA-TCTC
1 AATTTGC-A-GCACTTAAACACT-TC
76216198 AATTT-CTAGCAAC-TAAACACTTC
1 AATTTGC-AGC-ACTTAAACACTTC
* *
76216221 AATTTGCAGTACTTAAACATTTC
1 AATTTGCAGCACTTAAACACTTC
* * * *
76216244 AATTTACAACATTTAAGCACTTC
1 AATTTGCAGCACTTAAACACTTC
* *
76216267 AATTTACAGCATTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* * *
76216290 AATTTACAACA-TTTAACACTTC
1 AATTTGCAGCACTTAAACACTTC
*
76216312 AATTTGCAGCACTTTAACACTTC
1 AATTTGCAGCACTTAAACACTTC
76216335 AATTTGCAGCACTTTAAACACTTC
1 AATTTGCAGCAC-TTAAACACTTC
* * *
76216359 AATTTGCTGCATTTTAACA-TCTC
1 AATTTGCAGCACTTAAACACT-TC
** * * * *
76216382 AATTAACAACATTTATACACCTC
1 AATTTGCAGCACTTAAACACTTC
* *
76216405 AA-TTACAGCGA-TAAAACA-TCTC
1 AATTTGCAGC-ACTTAAACACT-TC
*
76216427 AATTTCCAGCAAC-TAAACACTTC
1 AATTTGCAGC-ACTTAAACACTTC
*
76216450 AATTTGCAGTACTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* * * *
76216473 AATTTACAACATTTAAGCACTTC
1 AATTTGCAGCACTTAAACACTTC
* *
76216496 AATTTGCAACATTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
76216519 AATTTGC
1 AATTTGC
76216526 TGCAGTTTAA
Statistics
Matches: 504, Mismatches: 110, Indels: 65
0.74 0.16 0.10
Matches are distributed among these distances:
21 1 0.00
22 92 0.18
23 387 0.77
24 24 0.05
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.34
Consensus pattern (23 bp):
AATTTGCAGCACTTAAACACTTC
Found at i:76215941 original size:46 final size:46
Alignment explanation
Indices: 76215891--76216523 Score: 485
Period size: 46 Copynumber: 13.8 Consensus size: 46
76215881 TTTGCAGTAC
* * *
76215891 TTAAAAACTTCAATTTGCAACACTTTAACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACAT
*
76215937 TTAAACACTTCAATTTGCAGCACTTTAACA-TCTCAATTAACAACAT
1 TTAAACACTTCAATTTGCAGCACTTTAACACT-TCAATTTACAACAT
* * * * * ** * * *
76215983 TTATACTCCTCAA-TTACATCGA-TAAAACA-TCTCAATTTCCAGCAA
1 TTAAACACTTCAATTTGCAGC-ACTTTAACACT-TCAATTTACAACAT
* * * *
76216028 CTAAACACTTCAATTTGTAGTACTTAAACACTTCAATTTACAACAT
1 TTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACAT
* *
76216074 TTAAGCACTTCAATTTACAGCA-TTTAAACACTTCAATTTACAACAT
1 TTAAACACTTCAATTTGCAGCACTTT-AACACTTCAATTTACAACAT
* * * * **
76216120 TT-AACACTTAAATTTGTAGCACTTTTACA-TCTCAATTAACATTAT
1 TTAAACACTTCAATTTGCAGCACTTTAACACT-TCAATTTACAACAT
* * * * * * *
76216165 TTATACACCTCAA-TT--A-CAATGATAAAACATCTCAATTT-CTAGCAA
1 TTAAACACTTCAATTTGCAGCACT-TTAACAC-T-TCAATTTAC-AACAT
* * * *
76216210 CTAAACACTTCAATTTGCAGTACTTAAACATTTCAATTTACAACAT
1 TTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACAT
* *
76216256 TTAAGCACTTCAATTTACAGCA-TTTAAACACTTCAATTTACAACAT
1 TTAAACACTTCAATTTGCAGCACTTT-AACACTTCAATTTACAACAT
* *
76216302 TT-AACACTTCAATTTGCAGCACTTTAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACA-T
* * *
76216348 TTAAACACTTCAATTTGCTGCATTTTAACA-TCTCAATTAACAACAT
1 TTAAACACTTCAATTTGCAGCACTTTAACACT-TCAATTTACAACAT
* * * ** * * *
76216394 TTATACACCTCAA-TTACAGCGA-TAAAACA-TCTCAATTTCCAGCAA
1 TTAAACACTTCAATTTGCAGC-ACTTTAACACT-TCAATTTACAACAT
* * *
76216439 CTAAACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAACAT
1 TTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACAT
* *
76216485 TTAAGCACTTCAATTTGCAACA-TTTAAACACTTCAATTT
1 TTAAACACTTCAATTTGCAGCACTTT-AACACTTCAATTT
76216524 GCTGCAGTTT
Statistics
Matches: 457, Mismatches: 102, Indels: 56
0.74 0.17 0.09
Matches are distributed among these distances:
42 3 0.01
43 4 0.01
44 2 0.00
45 159 0.35
46 244 0.53
47 39 0.09
48 4 0.01
49 2 0.00
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.34
Consensus pattern (46 bp):
TTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACAT
Found at i:76216033 original size:91 final size:92
Alignment explanation
Indices: 76215917--76216511 Score: 418
Period size: 91 Copynumber: 6.5 Consensus size: 92
76215907 GCAACACTTT
*
76215917 AACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACA
1 AACACTTCAATTTACAGCAATTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACA
* *
76215982 TTTATA-CTCCTCAA-TTACATCGA-TAA
66 TTTA-AGCACCTCAATTTACAGC-ATTAA
* * * * * *
76216008 AACA-TCTCAATTTCCAGCAACTAAACACTTCAATTTGTAGTACTTAAACA-CTTCAATTTACAA
1 AACACT-TCAATTTACAGCAATTAAACACTTCAATTTGCAGCACTTTAACATC-TCAATTAACAA
* *
76216071 CATTTAAGCACTTCAATTTACAGCATTTA
64 CATTTAAGCACCTCAATTTACAGCATTAA
* * * * * **
76216100 AACACTTCAATTTACAAC-ATTTAACACTTAAATTTGTAGCACTTTTACATCTCAATTAACATTA
1 AACACTTCAATTTACAGCAATTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACA
76216164 TTTATA-CACCTCAA-TTACA--ATGATAA
66 TTTA-AGCACCTCAATTTACAGCAT--TAA
* * * * *
76216190 AACA-TCTCAATTT-CTAGCAACTAAACACTTCAATTTGCAGTACTTAAACATTTCAATTTACAA
1 AACACT-TCAATTTAC-AGCAATTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAA
* *
76216253 CATTTAAGCACTTCAATTTACAGCATTTA
64 CATTTAAGCACCTCAATTTACAGCATTAA
* * ** *
76216282 AACACTTCAATTTACAAC-ATTTAACACTTCAATTTGCAGCACTTTAACA-CTTCAATTTGCAGC
1 AACACTTCAATTTACAGCAATTAAACACTTCAATTTGCAGCACTTTAACATC-TCAATTAACAAC
* * * * **
76216345 ACTTTAAACACTTCAATTTGCTGCATTTT
65 A-TTTAAGCACCTCAATTTACAGCATTAA
* * * * * * ** ** *
76216374 AACA-TCTCAATTAACAACATTTATACACCTCAA-TTACAGCGA-TAAAACATCTCAATTTCCAG
1 AACACT-TCAATTTACAGCAATTAAACACTTCAATTTGCAGC-ACTTTAACATCTCAATTAACAA
** * * * *
76216436 CAACTAAACACTTCAATTTGCAGTACTT-A
64 CATTTAAGCACCTCAATTTACAGCA-TTAA
* * * *
76216465 AACACTTCAATTTACAACATTTAAGCACTTCAATTTGCAACA-TTTAA
1 AACACTTCAATTTACAGCAATTAAACACTTCAATTTGCAGCACTTTAA
76216512 ACACTTCAAT
Statistics
Matches: 404, Mismatches: 72, Indels: 56
0.76 0.14 0.11
Matches are distributed among these distances:
88 2 0.00
89 2 0.00
90 24 0.06
91 246 0.61
92 113 0.28
93 15 0.04
94 2 0.00
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.34
Consensus pattern (92 bp):
AACACTTCAATTTACAGCAATTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACA
TTTAAGCACCTCAATTTACAGCATTAA
Found at i:76216167 original size:68 final size:68
Alignment explanation
Indices: 76215891--76216523 Score: 300
Period size: 68 Copynumber: 9.2 Consensus size: 68
76215881 TTTGCAGTAC
* * * *
76215891 TTAAAAACTTCAATTTGCAACACTTTAACACTTCAATTTACAGCA-TTTAAACACTTCAATTTGC
1 TTAAACACTTCAATTTACAACA-TTTAACACTTCAATTTGCAGCACTTT-AACACTTCAATTTAC
**
76215955 AGCACT
64 AATA-T
* * * * * **
76215961 TT-AACA-TCTCAATTAACAACATTTATACTCCTCAA-TTACATCGA-TAAAACA-TCTCAATTT
1 TTAAACACT-TCAATTTACAACATTTA-ACACTTCAATTTGCAGC-ACTTTAACACT-TCAATTT
* ** *
76216021 CCAGCAA
62 ACAATAT
* ** * * *
76216028 CTAAACACTTCAATTTGTAGTAC-TTAAACACTTCAATTTACAACA-TTTAAGCACTTCAATTTA
1 TTAAACACTTCAA-TT-TACAACATTTAACACTTCAATTTGCAGCACTTTAA-CACTTCAATTTA
**
76216091 CAGCAT
63 CAATAT
* * * *
76216097 TTAAACACTTCAATTTACAACATTTAACACTTAAATTTGTAGCACTTTTACA-TCTCAATTAACA
1 TTAAACACTTCAATTTACAACATTTAACACTTCAATTTGCAGCACTTTAACACT-TCAATTTACA
*
76216161 TTAT
65 ATAT
* * * ** *
76216165 TTATACACCTCAA-TTACAATGATAAAACA-TCTCAATTT-CTAGCAAC-TAAACACTTCAATTT
1 TTAAACACTTCAATTTACAA-CATTTAACACT-TCAATTTGC-AGC-ACTTTAACACTTCAATTT
* * *
76216226 GCAGTAC
62 ACAATAT
* *
76216233 TTAAACATTTCAATTTACAACATTTAAGCACTTCAATTTACAGCA-TTTAAACACTTCAATTTAC
1 TTAAACACTTCAATTTACAACATTTAA-CACTTCAATTTGCAGCACTTT-AACACTTCAATTTAC
*
76216297 AACAT
64 AATAT
* * *
76216302 TT-AACACTTCAATTTGCAGCACTTTAACACTTCAATTTGCAGCACTTTAAACACTTCAATTTGC
1 TTAAACACTTCAATTTACAACA-TTTAACACTTCAATTTGCAGCACTTT-AACACTTCAATTTAC
***
76216366 TGCAT
64 AATAT
* * * * **
76216371 TTTAACA-TCTCAATTAACAACATTTATACACCTCAA-TTACAGCGA-TAAAACA-TCTCAATTT
1 TTAAACACT-TCAATTTACAACATTTA-ACACTTCAATTTGCAGC-ACTTTAACACT-TCAATTT
* ** *
76216432 CCAGCAA
62 ACAATAT
* * * * * *
76216439 CTAAACACTTCAATTTGCAGTAC-TTAAACACTTCAATTTACAACA-TTTAAGCACTTCAATTTG
1 TTAAACACTTCAATTTACA--ACATTTAACACTTCAATTTGCAGCACTTTAA-CACTTCAATTTA
*
76216502 CAACAT
63 CAATAT
76216508 TTAAACACTTCAATTT
1 TTAAACACTTCAATTT
76216524 GCTGCAGTTT
Statistics
Matches: 437, Mismatches: 88, Indels: 77
0.73 0.15 0.13
Matches are distributed among these distances:
67 15 0.03
68 206 0.47
69 182 0.42
70 34 0.08
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.34
Consensus pattern (68 bp):
TTAAACACTTCAATTTACAACATTTAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAA
TAT
Found at i:76216211 original size:182 final size:182
Alignment explanation
Indices: 76215897--76216338 Score: 719
Period size: 182 Copynumber: 2.4 Consensus size: 182
76215887 GTACTTAAAA
* * *
76215897 ACTTCAATTTGCAACACTTT-AACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACT
1 ACTTCAATTTACAGCA-TTTAAACACTTCAATTTACAACATTT-AACACTTCAATTTGCAGCACT
*
76215961 TTAACATCTCAATTAACAACATTTATACTCCTCAATTACATCGATAAAACATCTCAATTTCCAGC
64 TTAACATCTCAATTAACAACATTTATACACCTCAATTACATCGATAAAACATCTCAATTTCCAGC
*
76216026 AACTAAACACTTCAATTTGTAGTACTTAAACACTTCAATTTACAACATTTAAGC
129 AACTAAACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAACATTTAAGC
* *
76216080 ACTTCAATTTACAGCATTTAAACACTTCAATTTACAACATTTAACACTTAAATTTGTAGCACTTT
1 ACTTCAATTTACAGCATTTAAACACTTCAATTTACAACATTTAACACTTCAATTTGCAGCACTTT
* ** *
76216145 TACATCTCAATTAACATTATTTATACACCTCAATTACAAT-GATAAAACATCTCAATTTCTAGCA
66 AACATCTCAATTAACAACATTTATACACCTCAATTAC-ATCGATAAAACATCTCAATTTCCAGCA
*
76216209 ACTAAACACTTCAATTTGCAGTACTTAAACATTTCAATTTACAACATTTAAGC
130 ACTAAACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAACATTTAAGC
76216262 ACTTCAATTTACAGCATTTAAACACTTCAATTTACAACATTTAACACTTCAATTTGCAGCACTTT
1 ACTTCAATTTACAGCATTTAAACACTTCAATTTACAACATTTAACACTTCAATTTGCAGCACTTT
76216327 AACA-CTTCAATT
66 AACATC-TCAATT
76216339 TGCAGCACTT
Statistics
Matches: 241, Mismatches: 15, Indels: 7
0.92 0.06 0.03
Matches are distributed among these distances:
181 1 0.00
182 203 0.84
183 37 0.15
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.35
Consensus pattern (182 bp):
ACTTCAATTTACAGCATTTAAACACTTCAATTTACAACATTTAACACTTCAATTTGCAGCACTTT
AACATCTCAATTAACAACATTTATACACCTCAATTACATCGATAAAACATCTCAATTTCCAGCAA
CTAAACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAACATTTAAGC
Found at i:76216420 original size:229 final size:228
Alignment explanation
Indices: 76216033--76216523 Score: 774
Period size: 229 Copynumber: 2.1 Consensus size: 228
76216023 AGCAACTAAA
* * *
76216033 CACTTCAATTTGTAGTACTTAAACACTTCAATTTACAACATTTAAGCACTTCAATTTACAGCATT
1 CACTTCAATTTGCAGCATTTAAACACTTCAATTTACAACATTTAAGCACTTCAATTTACAGCATT
**
76216098 TAAACACTTCAATTTACAACATTTAACACTTAAATTTGTAGCACTTTTACATCTCAATTAACATT
66 TAAACACTTCAATTTACAACATTTAACACTTAAATTTGTAGCACTTTTACATCTCAATTAACAAC
* *
76216163 ATTTATACACCTCAATTACAATGATAAAACATCTCAATTTCTAGCAACTAAACACTTCAATTTGC
131 ATTTATACACCTCAATTACAACGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGC
*
76216228 AGTACTTAAACATTTCAATTTACAACATTTAAG
196 AGTACTTAAACACTTCAATTTACAACATTTAAG
* *
76216261 CACTTCAATTTACAGCATTTAAACACTTCAATTTACAACATTTAA-CACTTCAATTTGCAGCACT
1 CACTTCAATTTGCAGCATTTAAACACTTCAATTTACAACATTTAAGCACTTCAATTTACAGCA-T
* * *
76216325 TT-AACACTTCAATTTGCAGCACTTTAAACACTTCAATTTGCT-GCA-TTTTAACATCTCAATTA
65 TTAAACACTTCAATTTACAACA-TTT-AACACTTAAATTTG-TAGCACTTTT-ACATCTCAATTA
*
76216387 ACAACATTTATACACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAA
126 ACAACATTTATACACCTCAATTACAACGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAA
76216452 TTTGCAGTACTTAAACACTTCAATTTACAACATTTAAG
191 TTTGCAGTACTTAAACACTTCAATTTACAACATTTAAG
*
76216490 CACTTCAATTTGCAACATTTAAACACTTCAATTT
1 CACTTCAATTTGCAGCATTTAAACACTTCAATTT
76216524 GCTGCAGTTT
Statistics
Matches: 242, Mismatches: 16, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
227 33 0.14
228 51 0.21
229 157 0.65
230 1 0.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.35
Consensus pattern (228 bp):
CACTTCAATTTGCAGCATTTAAACACTTCAATTTACAACATTTAAGCACTTCAATTTACAGCATT
TAAACACTTCAATTTACAACATTTAACACTTAAATTTGTAGCACTTTTACATCTCAATTAACAAC
ATTTATACACCTCAATTACAACGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGC
AGTACTTAAACACTTCAATTTACAACATTTAAG
Found at i:76216446 original size:160 final size:159
Alignment explanation
Indices: 76216265--76216568 Score: 450
Period size: 160 Copynumber: 1.9 Consensus size: 159
76216255 TTTAAGCACT
** * * *
76216265 TCAATTTACAGCATTTAAACACTTCAATTTACA-ACATTTAACACTTCAATTTGCAGCACTTTAA
1 TCAATTTACAGCAACTAAACACTTCAATTTACAGAC-TTAAACACTTCAATTTACAACA-TTTAA
* * *
76216329 -CACTTCAATTTGCAGCACTTTAAACACTTCAATTTGCTGCATTTTAACATCTCAATTAACAACA
64 GCACTTCAATTTGCAACA-TTTAAACACTTCAATTTGCTGCAGTTTAACATCTCAATTAACAAAA
76216393 TTTATACACCTCAATTACAGCGATAAAACATC
128 TTTATACACCTCAATTACAGCGATAAAACATC
* *
76216425 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAACATTTAAG
1 TCAATTTACAGCAACTAAACACTTCAATTTACAG-ACTTAAACACTTCAATTTACAACATTTAAG
76216490 CACTTCAATTTGCAACATTTAAACACTTCAATTTGCTGCAGTTTAACATCTCAATTAACAAAATT
65 CACTTCAATTTGCAACATTTAAACACTTCAATTTGCTGCAGTTTAACATCTCAATTAACAAAATT
* *
76216555 TATAGACTTCAATT
130 TATACACCTCAATT
76216569 TGCATTCCCC
Statistics
Matches: 129, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
160 92 0.71
161 35 0.27
162 2 0.02
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.34
Consensus pattern (159 bp):
TCAATTTACAGCAACTAAACACTTCAATTTACAGACTTAAACACTTCAATTTACAACATTTAAGC
ACTTCAATTTGCAACATTTAAACACTTCAATTTGCTGCAGTTTAACATCTCAATTAACAAAATTT
ATACACCTCAATTACAGCGATAAAACATC
Found at i:76216544 original size:69 final size:68
Alignment explanation
Indices: 76215869--76216572 Score: 470
Period size: 69 Copynumber: 10.3 Consensus size: 68
76215859 TTTCAGCAAC
* * * * * *
76215869 TAAACAATTCAGTTTGCAGTACTTAAAAACTTCAATTTGCAACACTTTAACACTTCAATTTACAG
1 TAAACACTTCAATTTGCAGCATTTAAACACTTCAATTTGCAGCA-TTTAACACTTCAATTTACAG
76215934 CATT
65 CATT
** * * *
76215938 TAAACACTTCAATTTGCAGCACTTT-AACA-TCTCAATTAACAACATTTATACTCCTCAA-TTAC
1 TAAACACTTCAATTTGCAGCA-TTTAAACACT-TCAATTTGCAGCATTTA-ACACTTCAATTTAC
*
76216000 ATCGA-T
63 AGC-ATT
* * ** * * *
76216006 AAAACA-TCTCAATTTCCAGCAACTAAACACTTCAATTTGTAGTACTTAAACACTTCAATTTACA
1 TAAACACT-TCAATTTGCAGCATTTAAACACTTCAATTTGCAGCA-TTTAACACTTCAATTTACA
*
76216070 ACATT
64 GCATT
* * * * * **
76216075 TAAGCACTTCAATTTACAGCATTTAAACACTTCAATTTACAACATTTAACACTTAAATTTGTAGC
1 TAAACACTTCAATTTGCAGCATTTAAACACTTCAATTTGCAGCATTTAACACTTCAATTTACAGC
76216140 ACTT
66 A-TT
* ** ** * * * * *
76216144 T-TACA-TCTCAATTAACATTATTTATACACCTCAA-TTACA--ATGATAAAACATCTCAATTT-
1 TAAACACT-TCAATTTGCAGCATTTAAACACTTCAATTTGCAGCAT-TTAACAC-T-TCAATTTA
**
76216203 CTAGCAAC
62 C-AGCATT
* * * * *
76216211 TAAACACTTCAATTTGCAGTACTTAAACATTTCAATTTACAACATTTAAGCACTTCAATTTACAG
1 TAAACACTTCAATTTGCAGCATTTAAACACTTCAATTTGCAGCATTTAA-CACTTCAATTTACAG
76216276 CATT
65 CATT
* * *
76216280 TAAACACTTCAATTTACAACATTT-AACACTTCAATTTGCAGCACTTTAACACTTCAATTTGCAG
1 TAAACACTTCAATTTGCAGCATTTAAACACTTCAATTTGCAGCA-TTTAACACTTCAATTTACAG
76216344 CACTT
65 CA-TT
* * ** * *
76216349 TAAACACTTCAATTTGCTGCATTTTAACA-TCTCAATTAACAACATTTATACACCTCAA-TTACA
1 TAAACACTTCAATTTGCAGCATTTAAACACT-TCAATTTGCAGCATTTA-ACACTTCAATTTACA
76216412 GCGA-T
64 GC-ATT
* * ** * *
76216417 AAAACA-TCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTTCAATTTACA
1 TAAACACT-TCAATTTGCAGCATTTAAACACTTCAATTTGCAGCA-TTTAACACTTCAATTTACA
*
76216481 ACATT
64 GCATT
* * * *
76216486 TAAGCACTTCAATTTGCAACATTTAAACACTTCAATTTGCTGCAGTTTAACA-TCTCAATTAACA
1 TAAACACTTCAATTTGCAGCATTTAAACACTTCAATTTGCAGCA-TTTAACACT-TCAATTTACA
**
76216550 AAATT
64 GCATT
* *
76216555 TATAGACTTCAATTTGCA
1 TAAACACTTCAATTTGCA
76216573 TTCCCCAATA
Statistics
Matches: 492, Mismatches: 106, Indels: 74
0.73 0.16 0.11
Matches are distributed among these distances:
65 2 0.00
66 5 0.01
67 11 0.02
68 196 0.40
69 242 0.49
70 32 0.07
71 4 0.01
ACGTcount: A:0.38, C:0.22, G:0.06, T:0.34
Consensus pattern (68 bp):
TAAACACTTCAATTTGCAGCATTTAAACACTTCAATTTGCAGCATTTAACACTTCAATTTACAGC
ATT
Found at i:76219641 original size:32 final size:33
Alignment explanation
Indices: 76219605--76219680 Score: 111
Period size: 34 Copynumber: 2.3 Consensus size: 33
76219595 TTTTATGTAA
76219605 GAAAACAAAAGC-AAAA-AAAAATTTCAAAATAT
1 GAAAA-AAAAGCAAAAATAAAAATTTCAAAATAT
*
76219637 GAAAAAAATAACAAAAATAAAAATTTCAAAATAT
1 GAAAAAAA-AGCAAAAATAAAAATTTCAAAATAT
76219671 GAAAAAAAAG
1 GAAAAAAAAG
76219681 TTATAATTTG
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
31 3 0.08
32 7 0.18
33 5 0.13
34 24 0.62
ACGTcount: A:0.71, C:0.07, G:0.07, T:0.16
Consensus pattern (33 bp):
GAAAAAAAAGCAAAAATAAAAATTTCAAAATAT
Found at i:76219643 original size:20 final size:19
Alignment explanation
Indices: 76219619--76219678 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 19
76219609 ACAAAAGCAA
76219619 AAAAAAATTTCAAAATATG
1 AAAAAAATTTCAAAATATG
**
76219638 AAAAAAATAACAAAA-AT-
1 AAAAAAATTTCAAAATATG
76219655 --AAAAATTTCAAAATATG
1 AAAAAAATTTCAAAATATG
76219672 AAAAAAA
1 AAAAAAA
76219679 AGTTATAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
15 11 0.33
16 2 0.06
18 2 0.06
19 18 0.55
ACGTcount: A:0.72, C:0.05, G:0.03, T:0.20
Consensus pattern (19 bp):
AAAAAAATTTCAAAATATG
Found at i:76219943 original size:18 final size:16
Alignment explanation
Indices: 76219920--76219961 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
76219910 TATCTCTTAA
76219920 ATAATTTAAACTATAATT
1 ATAATTTAAA-TAT-ATT
*
76219938 ATAATTTTAATATATT
1 ATAATTTAAATATATT
76219954 A-AATTTAA
1 ATAATTTAA
76219962 TATTATCTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 6 0.27
16 4 0.18
17 3 0.14
18 9 0.41
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (16 bp):
ATAATTTAAATATATT
Found at i:76220038 original size:7 final size:7
Alignment explanation
Indices: 76220025--76220085 Score: 50
Period size: 7 Copynumber: 8.6 Consensus size: 7
76220015 ACTGATTAAT
76220025 CTAAACC
1 CTAAACC
*
76220032 TTAAACC
1 CTAAACC
76220039 CTAAACC
1 CTAAACC
*
76220046 CTAAATC
1 CTAAACC
* *
76220053 ATAAAAC
1 CTAAACC
* *
76220060 ATAAACT
1 CTAAACC
76220067 CTAAACTC
1 CTAAAC-C
*
76220075 CTAACCC
1 CTAAACC
76220082 CTAA
1 CTAA
76220086 CTATTAACCC
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
7 38 0.88
8 5 0.12
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:76220087 original size:21 final size:21
Alignment explanation
Indices: 76220063--76220102 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
76220053 ATAAAACATA
* *
76220063 AACTCTAAACTCCTAACCCCT
1 AACTATAAACCCCTAACCCCT
*
76220084 AACTATTAACCCCTAACCC
1 AACTATAAACCCCTAACCC
76220103 TAAACCTTCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.42, G:0.00, T:0.23
Consensus pattern (21 bp):
AACTATAAACCCCTAACCCCT
Found at i:76220659 original size:40 final size:40
Alignment explanation
Indices: 76220614--76220723 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
76220604 TTATTTTTTT
* *
76220614 GTGGCGTTTTTCAAAAAACGCCGCTAATGGTCGACCTATA
1 GTGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATA
* * *
76220654 GTGGCGTTTTTCAAAAAGCACTGCTAATGCTCGATCTATA
1 GTGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATA
* * *
76220694 GCGACGTTTTTCAAAAAGCGCCACTAATGC
1 GTGGCGTTTTTCAAAAAGCGCCGCTAATGC
76220724 CACTAAAGCT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (40 bp):
GTGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATA
Found at i:76220819 original size:40 final size:40
Alignment explanation
Indices: 76220775--76220861 Score: 120
Period size: 40 Copynumber: 2.2 Consensus size: 40
76220765 TTTTGTGGCG
* * *
76220775 TTTTTTAAAAAGCATAGCTAATGCTCGATCTATAGCGGTA
1 TTTTTTAAAAAGCACAGCTAATGCTCGATCCATAGCGGCA
* * *
76220815 TTTTTCAAAAAGCGCCGCTAATGCTCGATCCATAGCGGCA
1 TTTTTTAAAAAGCACAGCTAATGCTCGATCCATAGCGGCA
76220855 TTTTTTA
1 TTTTTTA
76220862 TGCAAACGCA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (40 bp):
TTTTTTAAAAAGCACAGCTAATGCTCGATCCATAGCGGCA
Found at i:76220825 original size:155 final size:155
Alignment explanation
Indices: 76220543--76220851 Score: 465
Period size: 155 Copynumber: 2.0 Consensus size: 155
76220533 GTTTTTATGG
* * *
76220543 CGTTTTTCAAAAAGCGCCGCTAATGCCACTAAAGCTCAACATAAAACGACGGCATTGTGCTTTAT
1 CGTTTTTCAAAAAGCGCCACTAATGCCACTAAAGCTCAACATAAAACGACGGCATGGTGCTTAAT
* * * * *
76220608 TTTTTTGTGGCGTTTTTCAAAAAACGCCGCTAATGGTCGACCTATAGTGGCGTTTTTCAAAAAGC
66 TTTTTTGTGGCGTTTTTCAAAAAACACAGCTAATGCTCGACCTATAGCGGCATTTTTCAAAAAGC
* *
76220673 ACTGCTAATGCTCGATCTATAGCGA
131 ACCGCTAATGCTCGATCCATAGCGA
*
76220698 CGTTTTTCAAAAAGCGCCACTAATGCCACTAAAGCTCAACATAAAACGACGGCGTGGTGCTTAAT
1 CGTTTTTCAAAAAGCGCCACTAATGCCACTAAAGCTCAACATAAAACGACGGCATGGTGCTTAAT
* * * * *
76220763 TTTTTTGTGGCGTTTTTTAAAAAGCATAGCTAATGCTCGATCTATAGCGGTATTTTTCAAAAAGC
66 TTTTTTGTGGCGTTTTTCAAAAAACACAGCTAATGCTCGACCTATAGCGGCATTTTTCAAAAAGC
*
76220828 GCCGCTAATGCTCGATCCATAGCG
131 ACCGCTAATGCTCGATCCATAGCG
76220852 GCATTTTTTA
Statistics
Matches: 137, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
155 137 1.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (155 bp):
CGTTTTTCAAAAAGCGCCACTAATGCCACTAAAGCTCAACATAAAACGACGGCATGGTGCTTAAT
TTTTTTGTGGCGTTTTTCAAAAAACACAGCTAATGCTCGACCTATAGCGGCATTTTTCAAAAAGC
ACCGCTAATGCTCGATCCATAGCGA
Found at i:76230246 original size:30 final size:30
Alignment explanation
Indices: 76230210--76230271 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
76230200 AATCGGAAGT
76230210 TTTGGCACTAAGTGT-ACGATTTAAACTAGC
1 TTTGGCACTAAGTGTGA-GATTTAAACTAGC
76230240 TTTGGCACTAAGTGTGAGATTTAAACTAGC
1 TTTGGCACTAAGTGTGAGATTTAAACTAGC
76230270 TT
1 TT
76230272 CGGCTACTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 30 0.97
31 1 0.03
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (30 bp):
TTTGGCACTAAGTGTGAGATTTAAACTAGC
Found at i:76233042 original size:42 final size:42
Alignment explanation
Indices: 76232916--76233076 Score: 173
Period size: 42 Copynumber: 3.8 Consensus size: 42
76232906 GTTGGTATTA
*
76232916 ATCTGAATTATCGTGTAAGACCGTGTCTGGGACACAGGCATCG
1 ATCTGAATT-TCGTGTAAGACCATGTCTGGGACACAGGCATCG
*
76232959 ATTTGAAATTTACGTGTAAGACCATGTCTGGGACATC-GGCATCG
1 ATCTG-AATTT-CGTGTAAGACCATGTCTGGGACA-CAGGCATCG
* * * * *
76233003 TATCTG-ATTTCGTATAAGACCCTGTTTGGGAAAGAGGCATCG
1 -ATCTGAATTTCGTGTAAGACCATGTCTGGGACACAGGCATCG
* * *
76233045 ATCTGAATTACATGTAAGACCACGTCTGGGAC
1 ATCTGAATTTCGTGTAAGACCATGTCTGGGAC
76233077 GTTGGCATTA
Statistics
Matches: 97, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
41 5 0.05
42 45 0.46
43 9 0.09
44 33 0.34
45 5 0.05
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (42 bp):
ATCTGAATTTCGTGTAAGACCATGTCTGGGACACAGGCATCG
Found at i:76234261 original size:27 final size:27
Alignment explanation
Indices: 76234219--76234299 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
76234209 AATCTGATAT
* * *
76234219 CTGTAGGCTAGCATTACTGGAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
76234246 TTGTAGGGTAGAATTACTGAAATGCCC
1 CTGTAGGGTAGAATTACTGAAATACCC
**
76234273 CTGTAGGGTAGAATTACCAAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
76234300 TTGGTTTGTA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACTGAAATACCC
Found at i:76234314 original size:27 final size:27
Alignment explanation
Indices: 76234284--76234369 Score: 111
Period size: 27 Copynumber: 3.2 Consensus size: 27
76234274 TGTAGGGTAG
76234284 AATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* *
76234311 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* * *
76234338 AATTACCGAAATA-CCTCTGATTTGTGA
1 AATTACCAAAATACCCT-TGGTTTGTAA
76234365 AATTA
1 AATTA
76234370 TTGAAATACC
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
26 2 0.04
27 49 0.96
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTGTAA
Found at i:76234394 original size:27 final size:27
Alignment explanation
Indices: 76234364--76234438 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
76234354 CTGATTTGTG
*
76234364 AAATTATTGAAATACCCTCGACCTATA
1 AAATTACTGAAATACCCTCGACCTATA
* * *
76234391 AAATTACTGAAATACCTTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTATA
*
76234418 AAATTAC-CAAAGTACCCTCGA
1 AAATTACTGAAA-TACCCTCGA
76234439 TTTACAGAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.07
27 38 0.93
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTATA
Found at i:76234434 original size:54 final size:54
Alignment explanation
Indices: 76234335--76234438 Score: 131
Period size: 54 Copynumber: 1.9 Consensus size: 54
76234325 CCCTAGTTTG
* * **
76234335 TAAAATTACCGAAATACCTCTGATTTGTGAAATTATTGAAATACCCTCGACCTA
1 TAAAATTACCGAAATACCTCTGACTTGTAAAATTATCCAAATACCCTCGACCTA
*
76234389 TAAAATTACTGAAATACCT-TCGACTTGTAAAATTA-CCAAAGTACCCTCGA
1 TAAAATTACCGAAATACCTCT-GACTTGTAAAATTATCCAAA-TACCCTCGA
76234439 TTTACAGAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
53 4 0.09
54 39 0.91
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (54 bp):
TAAAATTACCGAAATACCTCTGACTTGTAAAATTATCCAAATACCCTCGACCTA
Found at i:76234449 original size:27 final size:27
Alignment explanation
Indices: 76234430--76234758 Score: 406
Period size: 27 Copynumber: 12.2 Consensus size: 27
76234420 ATTACCAAAG
*
76234430 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
76234457 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
76234484 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
76234511 TAGCCTCAATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
76234538 TACCCTCAATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
76234565 TACCCTCGATTTAAAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
76234592 TACCCTCGATTTATAGAATTTCTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
76234619 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
76234646 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
76234673 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
76234700 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
76234727 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
76234754 TACCC
1 TACCC
76234759 CTAGGGTGTT
Statistics
Matches: 261, Mismatches: 41, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 261 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:76234450 original size:54 final size:51
Alignment explanation
Indices: 76234305--76234453 Score: 129
Period size: 54 Copynumber: 2.7 Consensus size: 51
76234295 TACCCTTGGT
* * *
76234305 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCTCTGAT
1 TTGTAAAATTACC-AAATA-CCCTCGATT-TAAAATTACCGAAATACCTCTGAC
* ** * *
76234359 TTGTGAAATTATTGAAATACCCTCGACCTATAAAATTACTGAAATACCT-TCGAC
1 TTGTAAAATTA-CCAAATACCCTCGA--TTTAAAATTACCGAAATACCTCT-GAC
76234413 TTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACCG
1 TTGTAAAATTACCAAA-TACCCTCGATTTA-A-AATTACCG
76234454 TTTTACCCTT
Statistics
Matches: 75, Mismatches: 13, Indels: 14
0.74 0.13 0.14
Matches are distributed among these distances:
52 3 0.04
53 10 0.13
54 61 0.81
55 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.31
Consensus pattern (51 bp):
TTGTAAAATTACCAAATACCCTCGATTTAAAATTACCGAAATACCTCTGAC
Found at i:76234477 original size:54 final size:54
Alignment explanation
Indices: 76234430--76234758 Score: 480
Period size: 54 Copynumber: 6.1 Consensus size: 54
76234420 ATTACCAAAG
* ** * * *
76234430 TACCCTCGATTTACAGAATTACCGTTTTACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTACCATTT
* *
76234484 TACCCTCGATTTATAGAATTACTATTTTAGCCTCAATTTACAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTACCATTT
* *
76234538 TACCCTCAATTTATAGAATTACTATTTTACCCTCGATTTAAAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTACCATTT
* * *
76234592 TACCCTCGATTTATAGAATTTCTATTTTACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTACCATTT
* * *
76234646 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTACCATTT
* *
76234700 TACCCTCGATTTATAGAATTA-TCGTTTTACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACT-ATTTTACCCTCGATTTACAAAATTACCATTT
76234754 TACCC
1 TACCC
76234759 CTAGGGTGTT
Statistics
Matches: 246, Mismatches: 28, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
53 1 0.00
54 245 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTACCATTT
Found at i:76234477 original size:81 final size:81
Alignment explanation
Indices: 76234392--76234758 Score: 425
Period size: 81 Copynumber: 4.5 Consensus size: 81
76234382 CGACCTATAA
** * * * *** *
76234392 AATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTT
1 AATTACTGATTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
*
76234457 TACCCTTGATTTACAG
66 TACCCTCGATTTACAG
* * * * * * *
76234473 AATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTAGCCTCAATTTACAAAATTACCATTT
1 AATTACTGATTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
* *
76234538 TACCCTCAATTTATAG
66 TACCCTCGATTTACAG
* * * *
76234554 AATTACT-ATTTTACCCTCGATTTAAAAAATTACCATTTTACCCTCGATTTATAGAATTTCTATT
1 AATTACTGA-TTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCATT
*
76234618 TTACCCTCGATTTACAA
65 TTACCCTCGATTTACAG
* * *
76234635 AATTA-TCGTTTTACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTATT
1 AATTACT-GATTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCATT
*
76234699 TTACCCTCGATTTATAG
65 TTACCCTCGATTTACAG
*
76234716 AATTA-TCGTTTTACCCTCGATTTATAAAATTACCATTTTACCC
1 AATTACT-GATTTACCCTCGATTTATAAAATTACCATTTTACCC
76234759 CTAGGGTGTT
Statistics
Matches: 242, Mismatches: 41, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
80 1 0.00
81 241 1.00
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.40
Consensus pattern (81 bp):
AATTACTGATTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
TACCCTCGATTTACAG
Found at i:76235294 original size:25 final size:25
Alignment explanation
Indices: 76235266--76235329 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
76235256 CATTCACATT
* *
76235266 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTGATA
*
76235291 CTGATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTGTCACCTGATA
*
76235316 CTGATTCTGCTTCT
1 CTGATTCTGATTCT
76235330 CATTTTGGTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.16, C:0.22, G:0.16, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTGATA
Found at i:76237232 original size:27 final size:27
Alignment explanation
Indices: 76237202--76237276 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 27
76237192 CTCATATCTA
* * * *
76237202 TAGGCTAGCATTACTGAAATACCCTTG
1 TAGGATAGAATTACTAAAATACCCATG
* *
76237229 TAGGGTAGAATTACTAAAATGCCCATG
1 TAGGATAGAATTACTAAAATACCCATG
*
76237256 TAGGATAGAATTACCAAAATA
1 TAGGATAGAATTACTAAAATA
76237277 TCCCTAGTTT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.27
Consensus pattern (27 bp):
TAGGATAGAATTACTAAAATACCCATG
Found at i:76237294 original size:27 final size:27
Alignment explanation
Indices: 76237264--76237361 Score: 117
Period size: 27 Copynumber: 3.6 Consensus size: 27
76237254 TGTAGGATAG
*
76237264 AATTACCAAAATATCCCTAG-TTTGTAA
1 AATTACCAAAATA-CCCTAGACTTGTAA
* *
76237291 AATTACCAAAATACCCTCGACCTGTAA
1 AATTACCAAAATACCCTAGACTTGTAA
** *
76237318 AATTACTGAAATACCCTTGACTTGTAA
1 AATTACCAAAATACCCTAGACTTGTAA
*
76237345 AATTACCAAAGTACCCT
1 AATTACCAAAATACCCT
76237362 CGATTTACAG
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 5 0.08
27 55 0.92
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCTAGACTTGTAA
Found at i:76237375 original size:27 final size:27
Alignment explanation
Indices: 76237356--76237686 Score: 394
Period size: 27 Copynumber: 12.2 Consensus size: 27
76237346 ATTACCAAAG
76237356 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
76237383 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
**
76237410 TACCCTCGATTTACAGAATTACTTTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
76237437 TACCTTCAATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
76237464 TACCCTCGATTTATAGAATT-CCTATTT
1 TACCCTCGATTTACAGAATTACC-ATTT
* * *
76237491 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
76237518 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
**
76237545 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * *
76237572 TACCCTCAATTTATAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* **
76237599 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
76237626 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
76237653 TACCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
76237680 TATCCCT
1 TA-CCCT
76237687 AGGGTGTTAA
Statistics
Matches: 268, Mismatches: 33, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
26 2 0.01
27 261 0.97
28 5 0.02
ACGTcount: A:0.30, C:0.22, G:0.06, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:76238228 original size:6 final size:6
Alignment explanation
Indices: 76238189--76238307 Score: 66
Period size: 6 Copynumber: 19.3 Consensus size: 6
76238179 TTGCATTCAC
* * * *
76238189 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTTTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
76238238 -TCACCTA ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTC
1 AT--TCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
*
76238288 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
76238308 AATGTTTCTT
Statistics
Matches: 84, Mismatches: 18, Indels: 22
0.68 0.15 0.18
Matches are distributed among these distances:
5 5 0.06
6 68 0.81
7 8 0.10
8 3 0.04
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:76238248 original size:25 final size:25
Alignment explanation
Indices: 76238220--76238286 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 25
76238210 CCTGATACTG
*
76238220 ATTCTGATTCTAATTTTGTCACCTA
1 ATTCTGATTCTAATTCTGTCACCTA
* *
76238245 ATTCTGATTCTGATTCTGTCACCTG
1 ATTCTGATTCTAATTCTGTCACCTA
*
76238270 ATTCTGATTCTGATTCT
1 ATTCTGATTCTAATTCT
76238287 CATTTTGATT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.19, C:0.21, G:0.12, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTAATTCTGTCACCTA
Found at i:76238280 original size:31 final size:30
Alignment explanation
Indices: 76238189--76238286 Score: 107
Period size: 31 Copynumber: 3.4 Consensus size: 30
76238179 TTGCATTCAC
* *
76238189 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGAT-CTG
* *
76238220 ATTCTGATTCTAATTTTGTCACCT-A----
1 ATTCTGATTCTGATTCTGTCACCTGATCTG
76238245 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGA-TCTG
76238276 ATTCTGATTCT
1 ATTCTGATTCT
76238287 CATTTTGATT
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
25 22 0.40
26 1 0.02
30 1 0.02
31 31 0.56
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTCACCTGATCTG
Found at i:76253184 original size:76 final size:76
Alignment explanation
Indices: 76253095--76253249 Score: 283
Period size: 76 Copynumber: 2.0 Consensus size: 76
76253085 TTGAGTGTGA
*
76253095 ATAGAAGATTGAATGAATTAAATTGTAATGTTACAAAACGAACATGATTGAATGTGATATAAAAG
1 ATAGAAGATTGAATGAATTAAATTGTAATGTTACAAAACGAACATGATTGAATGTGATATAAAAA
76253160 AGAACTTAAGT
66 AGAACTTAAGT
* *
76253171 ATAGAAGATTGAATGAATTAAATTGTAATGTTGCAAAATGAACATGATTGAATGTGATATAAAAA
1 ATAGAAGATTGAATGAATTAAATTGTAATGTTACAAAACGAACATGATTGAATGTGATATAAAAA
76253236 AGAACTTAAGT
66 AGAACTTAAGT
76253247 ATA
1 ATA
76253250 TGTGTTTATA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.48, C:0.05, G:0.18, T:0.30
Consensus pattern (76 bp):
ATAGAAGATTGAATGAATTAAATTGTAATGTTACAAAACGAACATGATTGAATGTGATATAAAAA
AGAACTTAAGT
Found at i:76258342 original size:31 final size:31
Alignment explanation
Indices: 76258300--76258363 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
76258290 CCTTTTCATA
*
76258300 TTTCATTTTTCATAACACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
** *
76258331 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
76258362 TT
1 TT
76258364 ACTGTAAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:76258605 original size:25 final size:26
Alignment explanation
Indices: 76258577--76258652 Score: 124
Period size: 23 Copynumber: 3.1 Consensus size: 26
76258567 GCCTAGCCTC
76258577 TTTTAATAACTGGGGCA-AAGCCCTT
1 TTTTAATAACTGGGGCATAAGCCCTT
76258602 TTTTAATAACTGGGGCATAAGCCC--
1 TTTTAATAACTGGGGCATAAGCCCTT
76258626 -TTTAATAACTGGGGCATAAGCCCTT
1 TTTTAATAACTGGGGCATAAGCCCTT
76258651 TT
1 TT
76258653 GCACTTCCTC
Statistics
Matches: 47, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
23 23 0.49
25 17 0.36
26 7 0.15
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (26 bp):
TTTTAATAACTGGGGCATAAGCCCTT
Found at i:76258724 original size:9 final size:9
Alignment explanation
Indices: 76258710--76258766 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
76258700 ATCTCGTGTT
76258710 CATATCATA
1 CATATCATA
*
76258719 CATATCATGTG
1 CATATCA--TA
76258730 CATATCATA
1 CATATCATA
* *
76258739 CATGTCATGTG
1 CATATCA--TA
76258750 CATATCATA
1 CATATCATA
76258759 CATATCAT
1 CATATCAT
76258767 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:76258733 original size:20 final size:20
Alignment explanation
Indices: 76258710--76258768 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
76258700 ATCTCGTGTT
76258710 CATATCATACATATCATGTG
1 CATATCATACATATCATGTG
*
76258730 CATATCATACATGTCATGTG
1 CATATCATACATATCATGTG
76258750 CATATCATACATATCATGT
1 CATATCATACATATCATGT
76258769 TTATCAAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (20 bp):
CATATCATACATATCATGTG
Found at i:76258833 original size:25 final size:25
Alignment explanation
Indices: 76258805--76258852 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
76258795 ATATATAAAC
* * *
76258805 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
76258830 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
76258853 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:76266378 original size:31 final size:30
Alignment explanation
Indices: 76266338--76266400 Score: 99
Period size: 31 Copynumber: 2.1 Consensus size: 30
76266328 CCTTTTCATA
76266338 TTTCAATTTCATAACACTGGGCCGAAGCCT
1 TTTCAATTTCATAACACTGGGCCGAAGCCT
**
76266368 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCA-ATTTCATAACACTGGGCCGAAGCCT
76266399 TT
1 TT
76266401 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 5 0.17
31 25 0.83
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (30 bp):
TTTCAATTTCATAACACTGGGCCGAAGCCT
Found at i:76266635 original size:24 final size:24
Alignment explanation
Indices: 76266594--76266736 Score: 220
Period size: 24 Copynumber: 6.0 Consensus size: 24
76266584 GCTTTATCAT
*
76266594 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
76266619 ATAATTGGGGCA-AAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
76266643 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
76266666 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
76266690 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
76266714 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
76266737 GCACTTCCTC
Statistics
Matches: 111, Mismatches: 3, Indels: 9
0.90 0.02 0.07
Matches are distributed among these distances:
23 24 0.22
24 74 0.67
25 13 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:76266669 original size:47 final size:49
Alignment explanation
Indices: 76266594--76266736 Score: 222
Period size: 47 Copynumber: 3.0 Consensus size: 49
76266584 GCTTTATCAT
* *
76266594 ATAACTGGAGGCCT-AGCCTCTTTTAATAATTGGGGCA-AAGCCCTTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTTA
76266643 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC-TTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTA
76266690 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
76266737 GCACTTCCTC
Statistics
Matches: 88, Mismatches: 2, Indels: 8
0.90 0.02 0.08
Matches are distributed among these distances:
47 39 0.44
48 34 0.39
49 15 0.17
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (49 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTA
Found at i:76266693 original size:71 final size:72
Alignment explanation
Indices: 76266594--76266735 Score: 227
Period size: 71 Copynumber: 2.0 Consensus size: 72
76266584 GCTTTATCAT
* *
76266594 ATAACTGGAGGCCTAGCCTCTTTTAATAATTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATAA
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAA
76266658 GCCCTTTA
65 GCCCTTTA
76266666 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAA
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAA
76266729 GCCCTTT
65 GCCCTTT
76266736 TGCACTTCCT
Statistics
Matches: 66, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
71 48 0.73
72 18 0.27
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (72 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAG
CCCTTTA
Found at i:76266808 original size:9 final size:9
Alignment explanation
Indices: 76266794--76266850 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
76266784 ATCTCGTGTG
76266794 CATATCATA
1 CATATCATA
*
76266803 CATATCATGTG
1 CATATCA--TA
76266814 CATATCATA
1 CATATCATA
* *
76266823 CATGTCATGTG
1 CATATCA--TA
76266834 CATATCATA
1 CATATCATA
76266843 CATATCAT
1 CATATCAT
76266851 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:76266813 original size:20 final size:20
Alignment explanation
Indices: 76266790--76266852 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
76266780 GAACATCTCG
76266790 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
76266810 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
76266830 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
76266850 TGT
1 TGT
76266853 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:76271379 original size:21 final size:23
Alignment explanation
Indices: 76271353--76271394 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
76271343 TAGGAATAGC
76271353 TAGGA-TTC-ATATGTCATGACA
1 TAGGATTTCGATATGTCATGACA
*
76271374 TAGGATTTCGATATGTGATGA
1 TAGGATTTCGATATGTCATGA
76271395 GAAAGTAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 3 0.17
23 10 0.56
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.36
Consensus pattern (23 bp):
TAGGATTTCGATATGTCATGACA
Found at i:76279128 original size:15 final size:15
Alignment explanation
Indices: 76279108--76279139 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
76279098 CAAAGACAAA
76279108 ACTTATGAACCATCT
1 ACTTATGAACCATCT
76279123 ACTTATGAACCATCT
1 ACTTATGAACCATCT
76279138 AC
1 AC
76279140 CAAGCCTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.28, G:0.06, T:0.31
Consensus pattern (15 bp):
ACTTATGAACCATCT
Found at i:76283721 original size:17 final size:17
Alignment explanation
Indices: 76283699--76283742 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
76283689 AATTAGATAA
76283699 AAATAAATAACG-AAAAT
1 AAATAAATAA-GAAAAAT
76283716 AAATAAATAAGAAAAAT
1 AAATAAATAAGAAAAAT
*
76283733 AAACAAATAA
1 AAATAAATAA
76283743 AAATCAATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 1 0.04
17 24 0.96
ACGTcount: A:0.75, C:0.05, G:0.05, T:0.16
Consensus pattern (17 bp):
AAATAAATAAGAAAAAT
Found at i:76284938 original size:26 final size:26
Alignment explanation
Indices: 76284888--76284938 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
76284878 TTGATAGTTT
* * *
76284888 AATGTTATAATTACATTCTGTTATGA
1 AATGTTATAATTAAATTATGCTATGA
76284914 AATGTTATAATTAAATTATGCTATG
1 AATGTTATAATTAAATTATGCTATG
76284939 GTCGAATATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.37, C:0.06, G:0.12, T:0.45
Consensus pattern (26 bp):
AATGTTATAATTAAATTATGCTATGA
Found at i:76287863 original size:37 final size:37
Alignment explanation
Indices: 76287804--76287912 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
76287794 AGCTCAGACG
* * *
76287804 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
76287841 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
76287878 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
76287913 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:76288183 original size:47 final size:47
Alignment explanation
Indices: 76288121--76288507 Score: 549
Period size: 47 Copynumber: 8.1 Consensus size: 47
76288111 ACACGTTTCG
* * * **
76288121 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
76288168 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
76288215 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
76288262 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
76288309 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ACATACGCATGTTCACATTCATCA
*
76288360 CATTGGCCATACGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
76288407 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
76288458 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
76288505 CAT
1 CAT
76288508 AAAATCCTAA
Statistics
Matches: 308, Mismatches: 24, Indels: 16
0.89 0.07 0.05
Matches are distributed among these distances:
47 221 0.72
49 2 0.01
51 85 0.28
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:76288387 original size:98 final size:98
Alignment explanation
Indices: 76288121--76288507 Score: 610
Period size: 98 Copynumber: 4.0 Consensus size: 98
76288111 ACACGTTTCG
* *
76288121 CATTAGCCATTCGGCCTTA-C-CACATATAT-T-CATGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
* * *
76288182 CCTTATCTCATATATGCATGTTCACATTCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
** *
76288215 CATTGGCCATTCGGCCTTATCACAC----ATACGCATGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
76288276 CCTTATCACACATACGCATGTTCACATTCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
* *
76288309 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACATTGGCCATACGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
76288374 CCTTATCACACATACGCATGTTCACATTCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
*
76288407 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
*
76288472 CCTTATCACACATACGCATGTTCACATCCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
76288505 CAT
1 CAT
76288508 AAAATCCTAA
Statistics
Matches: 271, Mismatches: 14, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
92 2 0.01
94 103 0.38
95 1 0.00
96 3 0.01
98 162 0.60
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.31
Consensus pattern (98 bp):
CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
CCTTATCACACATACGCATGTTCACATTCATCA
Found at i:76292335 original size:40 final size:40
Alignment explanation
Indices: 76292277--76292642 Score: 527
Period size: 40 Copynumber: 9.2 Consensus size: 40
76292267 CCGAATACAC
* * * * * *
76292277 ATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGAATAT
1 ATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATAT
* * * *
76292317 AACACCAGCACGAATGCTCTTCGGGACTTAACCCTGG-TAT
1 ATCACTAGCACGAATGCTCCTCGGGACTTAGCCC-GGATAT
* * * * * *
76292357 AACTCTAGCACGAATGCTCTTCGAGACTTGGCCCGGGTAT
1 ATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATAT
*
76292397 ATCACTAGCACGAATGCTCCTCGGGACTTAGCCCAGATAT
1 ATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATAT
76292437 ATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATAT
*
76292477 ATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGGTAT
1 ATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATAT
* *
76292517 ATCACTAGCACGAATGCTCCTCGAGACTTAGCCCAGATAT
1 ATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATAT
76292557 ATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATAT
*
76292597 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATAT
76292637 ATCACT
1 ATCACT
76292643 CTCAATTCTC
Statistics
Matches: 298, Mismatches: 26, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
39 2 0.01
40 295 0.99
41 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
ATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATAT
Found at i:76293969 original size:37 final size:37
Alignment explanation
Indices: 76293910--76294018 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
76293900 AGCTCAGACG
* * *
76293910 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
76293947 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
76293984 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
76294019 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Done.