Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 232 of 333
Found at i:76294289 original size:47 final size:47
Alignment explanation
Indices: 76294227--76294468 Score: 324
Period size: 47 Copynumber: 5.1 Consensus size: 47
76294217 ACACGTTTCG
* *
76294227 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
* *
76294274 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
* *
76294321 CATTGGCCATTCGGCCTTATCACACATACGT-ATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATA-TTCATGTTCACATTCATCA
**
76294368 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CACATATAT-T-CATGTTCACATTCATCA
* ** *
76294419 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
76294466 CAT
1 CAT
76294469 AAAATCCTAA
Statistics
Matches: 171, Mismatches: 18, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
47 122 0.71
49 15 0.09
51 34 0.20
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
Found at i:76294338 original size:94 final size:96
Alignment explanation
Indices: 76294227--76294468 Score: 346
Period size: 98 Copynumber: 2.5 Consensus size: 96
76294217 ACACGTTTCG
* * * *
76294227 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
76294292 AT-CTC-ATATATGCATGTTCACATTCATCA
66 ATACACAATATATACAGGTTCACATTCATCA
76294321 CATTGGCCATTCGGCCTTATCACACATACGT-ATGTTCACATTCATCACATTGGCCATTCGGCCT
1 CATTGGCCATTCGGCCTTATCACACATAC-TCATGTTCACATTCATCACATTGGCCATTCGGCCT
*
76294385 TATCACACATATATATACGGGTTCACATTCATCA
65 TAT-ACACA-ATATATACAGGTTCACATTCATCA
* *
76294419 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAT
1 CATTGGCCATTCGGCCTTATCACACATACTCATGTTCACATTCATCACAT
76294469 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
94 61 0.46
95 1 0.01
96 2 0.02
98 68 0.52
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (96 bp):
CATTGGCCATTCGGCCTTATCACACATACTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATACACAATATATACAGGTTCACATTCATCA
Found at i:76303380 original size:73 final size:75
Alignment explanation
Indices: 76303303--76303449 Score: 235
Period size: 73 Copynumber: 2.0 Consensus size: 75
76303293 TCTATTTTCA
* * *
76303303 TTTTAAGAATTTTAGAACTCTTATAGATTTAATTTTGTTTTCAATAAATTAACATAGCAGA-TTT
1 TTTTAAGAATTTTAGAACTCTTATAAATTTAATATTGTTTTCAATAAATTAACATACCAGATTTT
76303367 -TTTTACCTT
66 CTTTTACCTT
* *
76303376 TTTTAAGAATTTTAGAACTCTTTTAAATTTAATATTGTTTTCAATAAATTAACTTACCAGATTTT
1 TTTTAAGAATTTTAGAACTCTTATAAATTTAATATTGTTTTCAATAAATTAACATACCAGATTTT
76303441 CTTTTACCT
66 CTTTTACCT
76303450 ATTTATATCA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
73 56 0.84
74 3 0.04
75 8 0.12
ACGTcount: A:0.33, C:0.11, G:0.07, T:0.50
Consensus pattern (75 bp):
TTTTAAGAATTTTAGAACTCTTATAAATTTAATATTGTTTTCAATAAATTAACATACCAGATTTT
CTTTTACCTT
Found at i:76304113 original size:13 final size:13
Alignment explanation
Indices: 76304097--76304121 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76304087 GGTGAAAACG
76304097 TACTTTTGAAAAA
1 TACTTTTGAAAAA
76304110 TACTTTTGAAAA
1 TACTTTTGAAAA
76304122 TTTTATTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (13 bp):
TACTTTTGAAAAA
Found at i:76315133 original size:37 final size:37
Alignment explanation
Indices: 76315073--76315148 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
76315063 TATTACGAAA
* * *
76315073 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
*
76315110 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
76315147 TC
1 TC
76315149 CTTAGAACTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.22
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
Found at i:76315347 original size:47 final size:47
Alignment explanation
Indices: 76315269--76315862 Score: 945
Period size: 47 Copynumber: 12.6 Consensus size: 47
76315259 CCCTTCGAGA
* * * * * *
76315269 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
76315316 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
76315363 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
76315410 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76315457 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76315506 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76315553 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76315600 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
76315647 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76315694 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76315741 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
76315788 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76315835 CTTATCACATATATATACACTTTCACAT
1 CTTATCAC--ATATATACACTTTCACAT
76315863 ATGGGTTTAA
Statistics
Matches: 512, Mismatches: 31, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
47 453 0.88
49 59 0.12
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:76321989 original size:29 final size:27
Alignment explanation
Indices: 76321971--76322040 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
76321961 ATATTAAGTC
76321971 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
76321998 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
76322026 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
76322041 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:76322034 original size:28 final size:28
Alignment explanation
Indices: 76321971--76322065 Score: 129
Period size: 28 Copynumber: 3.4 Consensus size: 28
76321961 ATATTAAGTC
*
76321971 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
76321998 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
76322026 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
76322055 CGCACACTTAG
1 CGCACACTTAG
76322066 CGCCAATCTC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.36
28 23 0.38
29 16 0.26
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:76328208 original size:601 final size:601
Alignment explanation
Indices: 76327066--76328266 Score: 2402
Period size: 601 Copynumber: 2.0 Consensus size: 601
76327056 TCTCGTGCGC
76327066 GAATGGCATATGCTCTAGAAGGAGTACGGTTCTCGGCTCGAACAGCCGTATCAGAGGCCCCTCTC
1 GAATGGCATATGCTCTAGAAGGAGTACGGTTCTCGGCTCGAACAGCCGTATCAGAGGCCCCTCTC
76327131 TGACTACCACCCCTACCTCCTAAAATTCTCGGTGGTCTACCTCTAGTTGTCACTCCACTAGGTCT
66 TGACTACCACCCCTACCTCCTAAAATTCTCGGTGGTCTACCTCTAGTTGTCACTCCACTAGGTCT
76327196 TGCACCTTGAATCTTATTCTTCTCATCAAGCTCCGTGCAATCTCTAATGAAGTGGTCCTTCGAAC
131 TGCACCTTGAATCTTATTCTTCTCATCAAGCTCCGTGCAATCTCTAATGAAGTGGTCCTTCGAAC
76327261 CGCATCCGTAACAGGCCCTGTTAATAGACTTACCCCAACATTCACCTATGTGTCGTCTTCCACAT
196 CGCATCCGTAACAGGCCCTGTTAATAGACTTACCCCAACATTCACCTATGTGTCGTCTTCCACAT
76327326 TGGGGACATTCAGGTTTCTCTAGACGATTATTGCCCACACTAGCTACCGAAGTAGCTCGGGAGTC
261 TGGGGACATTCAGGTTTCTCTAGACGATTATTGCCCACACTAGCTACCGAAGTAGCTCGGGAGTC
76327391 CGTCGATGGTCGTGCTCTGATGGAAATTCCCGCAGTCATCCTCGACTTATTAGTGTCCTCCCTGA
326 CGTCGATGGTCGTGCTCTGATGGAAATTCCCGCAGTCATCCTCGACTTATTAGTGTCCTCCCTGA
76327456 ACTTCTTTACAGCTGAGAACGGAGCTTTACCCGTCGATCTTTTACGATAGTCTCTAGCTTCAAAT
391 ACTTCTTTACAGCTGAGAACGGAGCTTTACCCGTCGATCTTTTACGATAGTCTCTAGCTTCAAAT
76327521 TCAGCCTTCTTCTTCCCCTTTCCAAGTTCTTCCGCCTTGCAGGCTCGTTCGACTAGTGTCACGAA
456 TCAGCCTTCTTCTTCCCCTTTCCAAGTTCTTCCGCCTTGCAGGCTCGTTCGACTAGTGTCACGAA
76327586 TTCTTTTATCTCTAAAATACCCACTAATAGCCTTAAATCTTCATTCAATCCTTCTTCGAATCTTT
521 TTCTTTTATCTCTAAAATACCCACTAATAGCCTTAAATCTTCATTCAATCCTTCTTCGAATCTTT
76327651 TGCACATAGCAACCTT
586 TGCACATAGCAACCTT
76327667 GAATGGCATATGCTCTAGAAGGAGTACGGTTCTCGGCTCGAACAGCCGTATCAGAGGCCCCTCTC
1 GAATGGCATATGCTCTAGAAGGAGTACGGTTCTCGGCTCGAACAGCCGTATCAGAGGCCCCTCTC
76327732 TGACTACCACCCCTACCTCCTAAAATTCTCGGTGGTCTACCTCTAGTTGTCACTCCACTAGGTCT
66 TGACTACCACCCCTACCTCCTAAAATTCTCGGTGGTCTACCTCTAGTTGTCACTCCACTAGGTCT
76327797 TGCACCTTGAATCTTATTCTTCTCATCAAGCTCCGTGCAATCTCTAATGAAGTGGTCCTTCGAAC
131 TGCACCTTGAATCTTATTCTTCTCATCAAGCTCCGTGCAATCTCTAATGAAGTGGTCCTTCGAAC
76327862 CGCATCCGTAACAGGCCCTGTTAATAGACTTACCCCAACATTCACCTATGTGTCGTCTTCCACAT
196 CGCATCCGTAACAGGCCCTGTTAATAGACTTACCCCAACATTCACCTATGTGTCGTCTTCCACAT
76327927 TGGGGACATTCAGGTTTCTCTAGACGATTATTGCCCACACTAGCTACCGAAGTAGCTCGGGAGTC
261 TGGGGACATTCAGGTTTCTCTAGACGATTATTGCCCACACTAGCTACCGAAGTAGCTCGGGAGTC
76327992 CGTCGATGGTCGTGCTCTGATGGAAATTCCCGCAGTCATCCTCGACTTATTAGTGTCCTCCCTGA
326 CGTCGATGGTCGTGCTCTGATGGAAATTCCCGCAGTCATCCTCGACTTATTAGTGTCCTCCCTGA
76328057 ACTTCTTTACAGCTGAGAACGGAGCTTTACCCGTCGATCTTTTACGATAGTCTCTAGCTTCAAAT
391 ACTTCTTTACAGCTGAGAACGGAGCTTTACCCGTCGATCTTTTACGATAGTCTCTAGCTTCAAAT
76328122 TCAGCCTTCTTCTTCCCCTTTCCAAGTTCTTCCGCCTTGCAGGCTCGTTCGACTAGTGTCACGAA
456 TCAGCCTTCTTCTTCCCCTTTCCAAGTTCTTCCGCCTTGCAGGCTCGTTCGACTAGTGTCACGAA
76328187 TTCTTTTATCTCTAAAATACCCACTAATAGCCTTAAATCTTCATTCAATCCTTCTTCGAATCTTT
521 TTCTTTTATCTCTAAAATACCCACTAATAGCCTTAAATCTTCATTCAATCCTTCTTCGAATCTTT
76328252 TGCACATAGCAACCT
586 TGCACATAGCAACCT
76328267 CATCAGCTAC
Statistics
Matches: 600, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
601 600 1.00
ACGTcount: A:0.22, C:0.29, G:0.17, T:0.31
Consensus pattern (601 bp):
GAATGGCATATGCTCTAGAAGGAGTACGGTTCTCGGCTCGAACAGCCGTATCAGAGGCCCCTCTC
TGACTACCACCCCTACCTCCTAAAATTCTCGGTGGTCTACCTCTAGTTGTCACTCCACTAGGTCT
TGCACCTTGAATCTTATTCTTCTCATCAAGCTCCGTGCAATCTCTAATGAAGTGGTCCTTCGAAC
CGCATCCGTAACAGGCCCTGTTAATAGACTTACCCCAACATTCACCTATGTGTCGTCTTCCACAT
TGGGGACATTCAGGTTTCTCTAGACGATTATTGCCCACACTAGCTACCGAAGTAGCTCGGGAGTC
CGTCGATGGTCGTGCTCTGATGGAAATTCCCGCAGTCATCCTCGACTTATTAGTGTCCTCCCTGA
ACTTCTTTACAGCTGAGAACGGAGCTTTACCCGTCGATCTTTTACGATAGTCTCTAGCTTCAAAT
TCAGCCTTCTTCTTCCCCTTTCCAAGTTCTTCCGCCTTGCAGGCTCGTTCGACTAGTGTCACGAA
TTCTTTTATCTCTAAAATACCCACTAATAGCCTTAAATCTTCATTCAATCCTTCTTCGAATCTTT
TGCACATAGCAACCTT
Found at i:76330672 original size:28 final size:28
Alignment explanation
Indices: 76330605--76330699 Score: 120
Period size: 27 Copynumber: 3.4 Consensus size: 28
76330595 ATATTAAGTC
*
76330605 CGCACACTCAGTGCTATATAATC-AACA
1 CGCACACTTAGTGCTATATAATCAAACA
*
76330632 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACA
* * * *
76330660 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACA
76330689 CGCACACTTAG
1 CGCACACTTAG
76330700 CGCCAATCTC
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 22 0.37
28 22 0.37
29 16 0.27
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACA
Found at i:76332939 original size:94 final size:92
Alignment explanation
Indices: 76332810--76332978 Score: 212
Period size: 94 Copynumber: 1.8 Consensus size: 92
76332800 ACATCTCGTA
* * ** * *
76332810 GCCGATGTATGTCCCAGAAATGTCTTATACTGGCTTACATCTTGAGGCCGATGCATGTCCGAGAC
1 GCCGATGCATGTCCCAGAAATGTCTTACACTGGCTTACATAATGAGGCCGATGCATGTCCCAAAC
76332875 ATGCCTTACAATAGCACTCGTCTCAAT
66 ATGCCTTACAATAGCACTCGTCTCAAT
* * * * *
76332902 GCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTTTCATAATGTGGCCGGTGCATGTCCCAA
1 GCCGATG-CATGTCCCAGAAAT-GTCTTACACTGGCTTACATAATGAGGCCGATGCATGTCCCAA
*
76332967 ACATGTCTTACA
64 ACATGCCTTACA
76332979 CTAGTTCACA
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
92 7 0.11
93 12 0.19
94 44 0.70
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGAAATGTCTTACACTGGCTTACATAATGAGGCCGATGCATGTCCCAAAC
ATGCCTTACAATAGCACTCGTCTCAAT
Found at i:76335114 original size:24 final size:23
Alignment explanation
Indices: 76335080--76335126 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
76335070 GCTTGTATGG
*
76335080 AAAAATTTG-AAGGAAAGGGAAAAT
1 AAAAATGTGAAAGG-AA-GGAAAAT
76335104 AAAAATGTGAAAGGAAGGAAAAT
1 AAAAATGTGAAAGGAAGGAAAAT
76335127 TTGGGCTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 7 0.33
24 10 0.48
25 4 0.19
ACGTcount: A:0.60, C:0.00, G:0.26, T:0.15
Consensus pattern (23 bp):
AAAAATGTGAAAGGAAGGAAAAT
Found at i:76341122 original size:15 final size:15
Alignment explanation
Indices: 76341102--76341131 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
76341092 GCTAGGTGAT
76341102 AACATGGTGATTGAA
1 AACATGGTGATTGAA
76341117 AACATGGTGATTGAA
1 AACATGGTGATTGAA
76341132 GTATGAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.27, T:0.27
Consensus pattern (15 bp):
AACATGGTGATTGAA
Found at i:76347653 original size:53 final size:54
Alignment explanation
Indices: 76347585--76347724 Score: 165
Period size: 54 Copynumber: 2.6 Consensus size: 54
76347575 CTTACCATTG
* * * *
76347585 CCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCATTA
1 CCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATA
* * * * * * *
76347638 TCATGCCTTGGCATGGTCTTACATGATTTGCTTGCCTTGTAGAACTTACCAATG
1 CCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATA
*
76347692 CCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 CCATGCCTTGGCATGGTCTTACATGGTATCCTT
76347725 AAACCCTAAT
Statistics
Matches: 70, Mismatches: 16, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
53 32 0.46
54 38 0.54
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.37
Consensus pattern (54 bp):
CCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATA
Found at i:76347706 original size:54 final size:53
Alignment explanation
Indices: 76347573--76347724 Score: 178
Period size: 53 Copynumber: 2.8 Consensus size: 53
76347563 TTCCTTTTTA
* * * *
76347573 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATG
1 AACTTACCATTGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATG
* ** * * *
76347626 AACTCACCATTATCATGCCTTGGCATGGTCTTACATGATTTGCTTGCCTTGTAG
1 AACTTACCATTGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTAT-G
* * *
76347680 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCATTGCCATGCCTTGGCATGGTCTTACATGATATCCTT
76347725 AAACCCTAAT
Statistics
Matches: 80, Mismatches: 18, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
53 42 0.52
54 38 0.47
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (53 bp):
AACTTACCATTGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATG
Found at i:76350042 original size:43 final size:43
Alignment explanation
Indices: 76349944--76350045 Score: 125
Period size: 43 Copynumber: 2.4 Consensus size: 43
76349934 ATCGAGATGT
* * *
76349944 GATTACATGTAAGACCATGTCTGGGAAATTGGCATTGTATTGA
1 GATTACGTGTAAGACCATGTCTGGGAAATTGGCATCGTAATGA
* * *
76349987 GATTACGAGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-C
1 GATTACGTGTAAGACCATGTCTGGGAAATTGGCATCG-TAATGA
*
76350030 GATTTCGTGTAAGACC
1 GATTACGTGTAAGACC
76350046 CTGTTAGGGA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
43 47 0.94
44 3 0.06
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGAAATTGGCATCGTAATGA
Found at i:76365748 original size:46 final size:46
Alignment explanation
Indices: 76365675--76365868 Score: 185
Period size: 46 Copynumber: 4.2 Consensus size: 46
76365665 CAGATCAATT
* * * *
76365675 GATTGAAGAA-ACCACAAATCCTGTACCCCTGAGTTATAGTGGGATG
1 GATTGAAGAAGA-TACAAATCTTATACCCCTGAGTTACAGTGGGATG
* * *
76365721 TATTGAGGAAGATACAAATCTTATACCCCTGAGTTGCAGTGGGATG
1 GATTGAAGAAGATACAAATCTTATACCCCTGAGTTACAGTGGGATG
* * * *
76365767 GATTGAAGATGATAAAAATCTTATACCCTTGAGTTACAATGGGATG
1 GATTGAAGAAGATACAAATCTTATACCCCTGAGTTACAGTGGGATG
* * * * * * *
76365813 GATGGAAGAA-ACCAAAAATTTTATACCCTTAAGTTACAATGGGATG
1 GATTGAAGAAGA-TACAAATCTTATACCCCTGAGTTACAGTGGGATG
*
76365859 GATGGAAGAA
1 GATTGAAGAA
76365869 ACCACAAATT
Statistics
Matches: 127, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
45 1 0.01
46 125 0.98
47 1 0.01
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (46 bp):
GATTGAAGAAGATACAAATCTTATACCCCTGAGTTACAGTGGGATG
Found at i:76365869 original size:46 final size:46
Alignment explanation
Indices: 76365736--76365882 Score: 188
Period size: 46 Copynumber: 3.2 Consensus size: 46
76365726 AGGAAGATAC
* * * * * *
76365736 AAATCTTATACCCCTGAGTTGCAGTGGGATGGATTGAAGATGA-TAA
1 AAATCTTATACCCTTGAGTTACAATGGGATGGATGGAAGA-AACCAA
76365782 AAATCTTATACCCTTGAGTTACAATGGGATGGATGGAAGAAACCAA
1 AAATCTTATACCCTTGAGTTACAATGGGATGGATGGAAGAAACCAA
* * *
76365828 AAATTTTATACCCTTAAGTTACAATGGGATGGATGGAAGAAACCAC
1 AAATCTTATACCCTTGAGTTACAATGGGATGGATGGAAGAAACCAA
*
76365874 AAATTTTAT
1 AAATCTTAT
76365883 CTCCCTAAAG
Statistics
Matches: 91, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 1 0.01
46 90 0.99
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (46 bp):
AAATCTTATACCCTTGAGTTACAATGGGATGGATGGAAGAAACCAA
Found at i:76366161 original size:21 final size:21
Alignment explanation
Indices: 76366132--76366173 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
76366122 ATTTGGCATA
76366132 AGCAATGGAGTAGATTGAAGT
1 AGCAATGGAGTAGATTGAAGT
*
76366153 AGCAGTGGAGTAGATTGAAGT
1 AGCAATGGAGTAGATTGAAGT
76366174 CGTAGATCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.05, G:0.36, T:0.24
Consensus pattern (21 bp):
AGCAATGGAGTAGATTGAAGT
Found at i:76366650 original size:45 final size:46
Alignment explanation
Indices: 76366538--76366652 Score: 126
Period size: 46 Copynumber: 2.5 Consensus size: 46
76366528 AGATCGAAGC
76366538 CACAATCCTTATC-TCTTTGAAGTTGTAGTAGAGCAGGATAAAAATA
1 CACAATCCTTATCTTC-TTGAAGTTGTAGTAGAGCAGGATAAAAATA
* * * * * * * *
76366584 CACAAACCTTATCTCCCTGAAGTTGTAGTGGAGTAGGTTGAAATTA
1 CACAATCCTTATCTTCTTGAAGTTGTAGTAGAGCAGGATAAAAATA
*
76366630 C-CAATTCTTATCTTCTTGAAGTT
1 CACAATCCTTATCTTCTTGAAGTT
76366653 TCAGCAGAGT
Statistics
Matches: 56, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
45 18 0.32
46 37 0.66
47 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (46 bp):
CACAATCCTTATCTTCTTGAAGTTGTAGTAGAGCAGGATAAAAATA
Found at i:76369450 original size:30 final size:29
Alignment explanation
Indices: 76369414--76369474 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
76369404 AAACAAAAGT
*
76369414 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGAGATTT-AACTAGC
76369444 TTTGGCACTAAGTGTGAGATTTAACTAGC
1 TTTGGCACTAAGTGTGAGATTTAACTAGC
76369473 TT
1 TT
76369475 CGGCTACTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 9 0.30
30 21 0.70
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (29 bp):
TTTGGCACTAAGTGTGAGATTTAACTAGC
Found at i:76382477 original size:51 final size:49
Alignment explanation
Indices: 76382353--76382492 Score: 183
Period size: 51 Copynumber: 2.8 Consensus size: 49
76382343 AAGCTATCTA
* *
76382353 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTG
1 GTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGG
* * * *
76382402 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGG
1 GTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGG
*
76382453 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACC
76382493 TCACAATAGA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
48 4 0.05
49 35 0.45
51 38 0.49
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (49 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGG
Found at i:76383184 original size:8 final size:8
Alignment explanation
Indices: 76383171--76383200 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
76383161 CCCTTAAACT
76383171 TTTGCATA
1 TTTGCATA
*
76383179 TTTGCATT
1 TTTGCATA
76383187 TTTGCATA
1 TTTGCATA
76383195 TTTGCA
1 TTTGCA
76383201 CTTTTGCCCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.20, C:0.13, G:0.13, T:0.53
Consensus pattern (8 bp):
TTTGCATA
Found at i:76383191 original size:16 final size:16
Alignment explanation
Indices: 76383168--76383207 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
76383158 TGACCCTTAA
76383168 ACTTTTGCATATTTGC
1 ACTTTTGCATATTTGC
*
76383184 ATTTTTGCATATTTGC
1 ACTTTTGCATATTTGC
76383200 ACTTTTGC
1 ACTTTTGC
76383208 CCCAAGGTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.17, C:0.17, G:0.12, T:0.53
Consensus pattern (16 bp):
ACTTTTGCATATTTGC
Found at i:76385330 original size:46 final size:46
Alignment explanation
Indices: 76385232--76385451 Score: 214
Period size: 46 Copynumber: 4.8 Consensus size: 46
76385222 TAACCGTGCT
* *
76385232 GATGCATGTCCCAAACATGTCTTACACTAG--CACATCTCGTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCACATCTCG-AGGCC
* * *
76385276 GACGCATGTCCCAGACATGTCTGACACTGGCTAACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCACATCTCGAGGCC
* * * * *
76385322 TATGCATGTCCTAGACATGTCTTACACTGGCTCTCATACT-GTGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCACAT-CTCGAGGCC
* * * * * * *
76385368 GATGCATGTCCTAGACATGTCTTACACTAGCCCTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCACATCTCGAGGCC
*
76385414 GATGCCATGTCCCAGACATGGTCTTACACTGGCACACA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCACA
76385452 AATCTCATGT
Statistics
Matches: 143, Mismatches: 26, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
44 26 0.18
45 3 0.02
46 85 0.59
47 15 0.10
48 14 0.10
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.26
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCACATCTCGAGGCC
Found at i:76391950 original size:22 final size:20
Alignment explanation
Indices: 76391902--76391950 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 20
76391892 TCTTAACTAC
*
76391902 TCAAATCCATAGCCAAAACA
1 TCAAATCAATAGCCAAAACA
76391922 TACCAAATCAATATGCCAAAATCA
1 T--CAAATCAATA-GCCAAAA-CA
76391946 TCAAA
1 TCAAA
76391951 CTTACATAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
22 13 0.54
23 7 0.29
24 3 0.12
ACGTcount: A:0.51, C:0.27, G:0.04, T:0.18
Consensus pattern (20 bp):
TCAAATCAATAGCCAAAACA
Found at i:76392806 original size:43 final size:43
Alignment explanation
Indices: 76392759--76392863 Score: 149
Period size: 43 Copynumber: 2.4 Consensus size: 43
76392749 TTTTAGACAG
* * *
76392759 GGTCTTACATGAAATC-GAATAACGATGCCAATGTCCCAAACAT
1 GGTCTTACATGTAATCACAAT-ACAATGCCAATGTCCCAAACAT
* *
76392802 GGTCTTACACGTAATCACAATACAATGCCAATGTCCCAAACTT
1 GGTCTTACATGTAATCACAATACAATGCCAATGTCCCAAACAT
76392845 GGTCTTACATGTAATCACA
1 GGTCTTACATGTAATCACA
76392864 TATCGGTAAC
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
43 52 0.95
44 3 0.05
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (43 bp):
GGTCTTACATGTAATCACAATACAATGCCAATGTCCCAAACAT
Found at i:76397845 original size:45 final size:45
Alignment explanation
Indices: 76397794--76397884 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
76397784 CCAAAACATG
* *
76397794 TGTCACATACATCATGAACTCAGACCGCAACTTAACGAGTTCAGA
1 TGTCACATACATCATGAACTCAGACCACAACTCAACGAGTTCAGA
* *
76397839 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGA
1 TGTCACATACATCATGAACTCAGACCACAACTCAACGAGTTCAGA
76397884 T
1 T
76397885 CACATAATCT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.24
Consensus pattern (45 bp):
TGTCACATACATCATGAACTCAGACCACAACTCAACGAGTTCAGA
Found at i:76399818 original size:43 final size:43
Alignment explanation
Indices: 76399757--76399839 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
76399747 ACATGAATCA
* * *
76399757 CATCCATTATGAACTCGAACCTGTCAACAAGCTCGGATGCTTG
1 CATCCATAATGAACTCGAACCTATCAACAAGCTCCGATGCTTG
*
76399800 CATCCATAATGAACTCGAACCTATCAACGAGCTCCGATGC
1 CATCCATAATGAACTCGAACCTATCAACAAGCTCCGATGC
76399840 CACATATCTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (43 bp):
CATCCATAATGAACTCGAACCTATCAACAAGCTCCGATGCTTG
Found at i:76417048 original size:22 final size:20
Alignment explanation
Indices: 76417000--76417048 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 20
76416990 TCTTAACTAC
*
76417000 TCAAATCCATAGCCAAAACA
1 TCAAATCAATAGCCAAAACA
76417020 TACCAAATCAATATGCCAAAATCA
1 T--CAAATCAATA-GCCAAAA-CA
76417044 TCAAA
1 TCAAA
76417049 CTTACATAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
22 13 0.54
23 7 0.29
24 3 0.12
ACGTcount: A:0.51, C:0.27, G:0.04, T:0.18
Consensus pattern (20 bp):
TCAAATCAATAGCCAAAACA
Found at i:76417862 original size:43 final size:43
Alignment explanation
Indices: 76417797--76417966 Score: 148
Period size: 43 Copynumber: 4.0 Consensus size: 43
76417787 AGCTCGTACA
* * * * *
76417797 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACAAGGTCTTACACGTAATCACATATCG
* * * *
76417839 ATGCCACTGTCCCAGACAAGGTCTTACACGAAATCAAATAACG
1 ATGCCAATGTCCCAGACAAGGTCTTACACGTAATCACATATCG
* * *
76417882 ATGCAAATGTCCCA-AAAATGGTCTTACACGTAATCACA-ATACA
1 ATGCCAATGTCCCAGACAA-GGTCTTACACGTAATCACATAT-CG
*** * *
76417925 ATGCCAATGTCATGGACATGGTCTTACATGTAATCACATATC
1 ATGCCAATGTCCCAGACAAGGTCTTACACGTAATCACATATC
76417967 AGTAACCTAA
Statistics
Matches: 100, Mismatches: 23, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
42 9 0.09
43 87 0.87
44 4 0.04
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAAGGTCTTACACGTAATCACATATCG
Found at i:76418587 original size:30 final size:30
Alignment explanation
Indices: 76418551--76418654 Score: 104
Period size: 30 Copynumber: 3.3 Consensus size: 30
76418541 AAGCTTTCAT
76418551 AATTCATCATCAAACATTCAAAAACACATG
1 AATTCATCATCAAACATTCAAAAACACATG
* * *
76418581 AATTCATCAACGAAA-ATTCACAACTAAGCTTTCA-C
1 AATTCATCATC-AAACATTCA-AA--AA-C--ACATG
76418616 AATTCATCATCAAACATTCAAAAACACATG
1 AATTCATCATCAAACATTCAAAAACACATG
76418646 AATTCATCA
1 AATTCATCA
76418655 ATGGCAATTC
Statistics
Matches: 59, Mismatches: 6, Indels: 18
0.71 0.07 0.22
Matches are distributed among these distances:
29 2 0.03
30 24 0.41
31 6 0.10
32 2 0.03
33 2 0.03
34 6 0.10
35 15 0.25
36 2 0.03
ACGTcount: A:0.47, C:0.24, G:0.04, T:0.25
Consensus pattern (30 bp):
AATTCATCATCAAACATTCAAAAACACATG
Found at i:76418620 original size:65 final size:65
Alignment explanation
Indices: 76418538--76418669 Score: 228
Period size: 65 Copynumber: 2.0 Consensus size: 65
76418528 GATATCTATC
*
76418538 ACTAAGCTTTCATAATTCATCATCAAACATTCAAAAACACATGAATTCATCAACGAAAATTCACA
1 ACTAAGCTTTCACAATTCATCATCAAACATTCAAAAACACATGAATTCATCAACGAAAATTCACA
* **
76418603 ACTAAGCTTTCACAATTCATCATCAAACATTCAAAAACACATGAATTCATCAATGGCAATTCACA
1 ACTAAGCTTTCACAATTCATCATCAAACATTCAAAAACACATGAATTCATCAACGAAAATTCACA
76418668 AC
1 AC
76418670 ATCATCAATA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.45, C:0.24, G:0.05, T:0.26
Consensus pattern (65 bp):
ACTAAGCTTTCACAATTCATCATCAAACATTCAAAAACACATGAATTCATCAACGAAAATTCACA
Found at i:76420125 original size:21 final size:22
Alignment explanation
Indices: 76420093--76420133 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
76420083 TTTTTTTTAT
*
76420093 ATAAATTGTGATGTTTAGAAGC
1 ATAAATTGTGATGTTAAGAAGC
76420115 ATAAA-TGTGATGTTAAGAA
1 ATAAATTGTGATGTTAAGAA
76420134 AACCATAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.41, C:0.02, G:0.22, T:0.34
Consensus pattern (22 bp):
ATAAATTGTGATGTTAAGAAGC
Found at i:76427301 original size:47 final size:47
Alignment explanation
Indices: 76427250--76427382 Score: 171
Period size: 46 Copynumber: 2.9 Consensus size: 47
76427240 GAATTATAAG
* *
76427250 GCATCCGAACTCGTTGAATTGCGTTCTGAGTTCACTTATGGATG-CAA
1 GCATCCGAACTCGTTGAGTTGTGTTCTGAGTTCA-TTATGGATGTCAA
* * *
76427297 GCATCCGAACTCATTGCGTTGTGTTCTGAGTTCATTATGGATGTGAA
1 GCATCCGAACTCGTTGAGTTGTGTTCTGAGTTCATTATGGATGTCAA
* * *
76427344 -CACCCGAGCTCGTTGAGTTGTGTTCCGAGTTCATTATGG
1 GCATCCGAACTCGTTGAGTTGTGTTCTGAGTTCATTATGG
76427383 GTGAAATTAT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
46 43 0.57
47 32 0.43
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.34
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGTGTTCTGAGTTCATTATGGATGTCAA
Found at i:76434349 original size:47 final size:47
Alignment explanation
Indices: 76434298--76434430 Score: 180
Period size: 46 Copynumber: 2.9 Consensus size: 47
76434288 GAATTATGAG
*
76434298 GCATCCGAACTCGTTGAGTTGTGTTCCGAGTTCACTTATGGATG-CAA
1 GCATCCGAACTCATTGAGTTGTGTTCCGAGTTCA-TTATGGATGTCAA
* *
76434345 GCATCCGAACTCATTCAGTTGTGTTCCGAGTTCATTATGGATGTGAA
1 GCATCCGAACTCATTGAGTTGTGTTCCGAGTTCATTATGGATGTCAA
* * * *
76434392 -CACCCGAGCTCTTTGAGTTGCGTTCCGAGTTCATTATGG
1 GCATCCGAACTCATTGAGTTGTGTTCCGAGTTCATTATGG
76434431 GTGAAATTAT
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
46 43 0.56
47 34 0.44
ACGTcount: A:0.20, C:0.22, G:0.25, T:0.33
Consensus pattern (47 bp):
GCATCCGAACTCATTGAGTTGTGTTCCGAGTTCATTATGGATGTCAA
Found at i:76438176 original size:17 final size:17
Alignment explanation
Indices: 76438154--76438187 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
76438144 TGGTAAAGAG
*
76438154 CCATGTCATCATATGAC
1 CCATGTCAACATATGAC
76438171 CCATGTCAACATATGAC
1 CCATGTCAACATATGAC
76438188 AATGAGAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.29, G:0.12, T:0.26
Consensus pattern (17 bp):
CCATGTCAACATATGAC
Found at i:76440972 original size:27 final size:26
Alignment explanation
Indices: 76440941--76441118 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 26
76440931 TAAATTGTAC
76440941 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
76440968 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
*
76440994 ATGCACTAAGTGTGCGAATTGACCATGT
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
76441022 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
76441050 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
76441077 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
76441104 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
76441119 GACTCAATAT
Statistics
Matches: 130, Mismatches: 16, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
26 1 0.01
27 103 0.79
28 26 0.20
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:76441055 original size:82 final size:81
Alignment explanation
Indices: 76440942--76441097 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
76440932 AAATTGTACA
* *
76440942 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
76441006 TGCGAATTGACCATGTG
65 TGCGAATTGACCATGTG
* ** *
76441023 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
76441088 TGCGAGTTGA
65 TGCGAATTGA
76441098 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGTG
Found at i:76441109 original size:82 final size:81
Alignment explanation
Indices: 76440941--76441118 Score: 223
Period size: 82 Copynumber: 2.2 Consensus size: 81
76440931 TAAATTGTAC
* *
76440941 AGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
1 AGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
*
76441006 TGCGAATTGACCATGT
66 TGCGAATTGACCATAT
* * ** *
76441022 GGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAG
1 AGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAG
* **
76441086 TGTGCGAGTTGATTATAT
64 TGTGCGAATTGACCATAT
*
76441104 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
76441119 GACTCAATAT
Statistics
Matches: 82, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 16 0.20
82 66 0.80
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
AGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
TGCGAATTGACCATAT
Found at i:76449050 original size:27 final size:27
Alignment explanation
Indices: 76449019--76449196 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
76449009 TAAATTGTAC
76449019 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
76449046 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
76449072 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
76449100 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
76449128 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
76449155 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
76449182 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
76449197 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:76449133 original size:82 final size:81
Alignment explanation
Indices: 76449020--76449175 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
76449010 AAATTGTACA
* *
76449020 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
76449084 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
76449101 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
76449166 TGCGAGTTGA
65 TGCGAATTGA
76449176 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:76449187 original size:82 final size:81
Alignment explanation
Indices: 76449016--76449196 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
76449006 GATTAAATTG
* *
76449016 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
76449081 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
76449097 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
76449161 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
76449179 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
76449197 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:76467433 original size:46 final size:46
Alignment explanation
Indices: 76467383--76467558 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
76467373 TGGTTGAGCA
*
76467383 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * *
76467429 TCCGAACTCGTTGAGTTGAGTCAGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
*
76467474 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
76467522 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76467559 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 62 0.57
47 28 0.26
48 4 0.04
50 6 0.06
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:76467539 original size:93 final size:93
Alignment explanation
Indices: 76467380--76467551 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
76467370 GGATGGTTGA
* * *
76467380 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
76467445 TGAGTCAGAGTTCGTGAGATGTAACTAG
66 TGAGTCAGAGTTCGTGAGATGTAACTAG
*
76467473 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
76467538 TGAGTCCGAGTTCG
66 TGAGTCAGAGTTCG
76467552 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCAGAGTTCGTGAGATGTAACTAG
Found at i:76471197 original size:37 final size:37
Alignment explanation
Indices: 76471138--76471280 Score: 241
Period size: 37 Copynumber: 3.9 Consensus size: 37
76471128 AGCTCAGACG
* * *
76471138 AAATCTCCACACGAAGTTATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
76471175 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
76471212 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
76471249 TAATCTCCACACGTAGTCATCGGGTCTTACCC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCC
76471281 AGAATATATT
Statistics
Matches: 102, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:76471568 original size:50 final size:50
Alignment explanation
Indices: 76471433--76471579 Score: 244
Period size: 50 Copynumber: 3.0 Consensus size: 50
76471423 CATCGCCTAC
* *
76471433 ATATTTCACACT-AGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTGA-CCATTCGGCTTTACCACATATGCATATCTCATATAT
76471483 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
1 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
*
76471533 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATGT-TCATAT
1 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATAT
76471580 TCACCACATT
Statistics
Matches: 93, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
49 6 0.06
50 86 0.92
51 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.37
Consensus pattern (50 bp):
ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
Found at i:76471629 original size:47 final size:47
Alignment explanation
Indices: 76471538--76471776 Score: 374
Period size: 47 Copynumber: 5.1 Consensus size: 47
76471528 TATATATATT
* * * * *
76471538 TCACATTGACCATTCGGCTTTA-C-CACATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
* * *
76471583 CCACATTGGTCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
76471630 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
*
76471677 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTTA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
*
76471724 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
76471771 TCACAT
1 TCACAT
76471777 AAAATCCTAA
Statistics
Matches: 180, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 18 0.10
46 1 0.01
47 161 0.89
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
Found at i:76471656 original size:22 final size:22
Alignment explanation
Indices: 76471629--76471751 Score: 74
Period size: 22 Copynumber: 5.3 Consensus size: 22
76471619 GCTCACATTC
76471629 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
76471651 ATCACATATATG-CATGCTC-ACATT
1 ATCACAT-T-GGCCAT--TCGGCCTT
76471675 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
76471698 ATCACATATATG-CATGCTC-ACATTT
1 ATCACAT-T-GGCCAT--TCGGC-CTT
76471723 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
76471745 ATCACAT
1 ATCACAT
76471752 ATATGCATGT
Statistics
Matches: 75, Mismatches: 12, Indels: 28
0.65 0.10 0.24
Matches are distributed among these distances:
22 27 0.36
23 14 0.19
24 14 0.19
25 20 0.27
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:76480032 original size:32 final size:32
Alignment explanation
Indices: 76479995--76480059 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
76479985 GACGGGATGT
*
76479995 AAATTTTATCCT-GAGATTCTCAAATTTTTAAA
1 AAATTTTAT-CTAGAAATTCTCAAATTTTTAAA
* *
76480027 AAATTTTATCTATAAATTCTCAACTTTTTAAA
1 AAATTTTATCTAGAAATTCTCAAATTTTTAAA
76480059 A
1 A
76480060 TTCAATCTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 2 0.07
32 27 0.93
ACGTcount: A:0.40, C:0.12, G:0.03, T:0.45
Consensus pattern (32 bp):
AAATTTTATCTAGAAATTCTCAAATTTTTAAA
Found at i:76480068 original size:30 final size:31
Alignment explanation
Indices: 76480010--76480068 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 31
76480000 TTATCCTGAG
**
76480010 ATTCTCAAATTTTTAAAAAATTTTATCTATAA
1 ATTCTCAAATTTTT-AAAAATTCAATCTATAA
*
76480042 ATTCTCAACTTTTT-AAAATTCAATCTA
1 ATTCTCAAATTTTTAAAAATTCAATCTA
76480069 ACCGTTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 11 0.46
32 13 0.54
ACGTcount: A:0.41, C:0.14, G:0.00, T:0.46
Consensus pattern (31 bp):
ATTCTCAAATTTTTAAAAATTCAATCTATAA
Found at i:76480985 original size:12 final size:12
Alignment explanation
Indices: 76480963--76481001 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
76480953 TATTAAAAAG
76480963 TGATAAAAATTAA
1 TGAT-AAAATTAA
*
76480976 TTATAAAATTAAA
1 TGATAAAATT-AA
76480989 TGATAAAATTAA
1 TGATAAAATTAA
76481001 T
1 T
76481002 ATGGTAAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 9 0.39
13 14 0.61
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (12 bp):
TGATAAAATTAA
Found at i:76481570 original size:38 final size:33
Alignment explanation
Indices: 76481497--76481562 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
76481487 GTCAAGTGTG
76481497 ATTGTCTAGTTATTTCATTAATTACATTAAATT
1 ATTGTCTAGTTATTTCATTAATTACATTAAATT
* *
76481530 ATTGTCTAGTTATTTCGTTAGTTACATTAAATT
1 ATTGTCTAGTTATTTCATTAATTACATTAAATT
76481563 TTATTATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.52
Consensus pattern (33 bp):
ATTGTCTAGTTATTTCATTAATTACATTAAATT
Found at i:76483667 original size:5 final size:5
Alignment explanation
Indices: 76483657--76483684 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
76483647 GAGACAAAAG
76483657 AGAGA AGAGA AGAGA AGAGA AGAGA AGA
1 AGAGA AGAGA AGAGA AGAGA AGAGA AGA
76483685 TTTTGAGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (5 bp):
AGAGA
Found at i:76487741 original size:45 final size:45
Alignment explanation
Indices: 76487653--76487886 Score: 314
Period size: 45 Copynumber: 5.2 Consensus size: 45
76487643 CCAGCATTTC
* * * *
76487653 GCCTGCTAGGCTC-GAGGCCCG-ATA-TCATTTCACTGGCATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGT-ATCTCACCGGCATCATA
* * *
76487696 GCCTACTAGGCTCGAAA-GCCAGAATAGTATCTCACCGGCATTATA
1 GCCTGCTAGGCTC-AAAGGCCCGAATAGTATCTCACCGGCATCATA
* *
76487741 GCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCAGCATCATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATCATA
* *
76487786 GCTTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGGCATCATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATCATA
*
76487831 GCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGGCATCATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATCATA
76487876 GCCTGCTAGGC
1 GCCTGCTAGGC
76487887 CTGAAGCCTG
Statistics
Matches: 171, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
43 12 0.07
44 7 0.04
45 151 0.88
46 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (45 bp):
GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATCATA
Found at i:76491882 original size:93 final size:93
Alignment explanation
Indices: 76491723--76491893 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
76491713 GGATGGTTGA
* * *
76491723 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGGATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAGT
76491788 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
76491816 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACCTATGGATGCGAACGTCC-GAACTCGTTGAG
76491880 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
76491894 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:76491896 original size:46 final size:45
Alignment explanation
Indices: 76491727--76491898 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 45
76491717 GGTTGAGCAT
* * *
76491727 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGGATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
76491772 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
*
76491817 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 ---CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
76491865 CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
76491899 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
42 1 0.01
43 4 0.04
45 4 0.04
46 57 0.55
47 28 0.27
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:76499477 original size:93 final size:93
Alignment explanation
Indices: 76499318--76499488 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
76499308 GGATGGTTGA
76499318 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
76499383 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
76499411 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCC-GAACTCGTTGAG
76499475 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
76499489 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:76499491 original size:46 final size:45
Alignment explanation
Indices: 76499322--76499493 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 45
76499312 GGTTGAGCAT
*
76499322 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
76499367 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAACTAG-GCAT-
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGAATG
*
76499415 CCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
76499460 CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
76499494 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 3 0.03
46 60 0.57
47 30 0.29
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:76501820 original size:52 final size:51
Alignment explanation
Indices: 76501700--76501878 Score: 222
Period size: 51 Copynumber: 3.5 Consensus size: 51
76501690 ACTAGTGACT
* *
76501700 CAAGTGTGGTACTATGTGAAGGCCGCTTTGAGAAG-AGATAGC-TTGATCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGATCA
*
76501749 CAAATGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGATCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGATCA
* * * * *
76501801 CAAGTGTTGTACTATGTGAAGGCCAATTTATGAAGAAGGTAGATTTGA-CTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGATC-A
*
76501852 CAAG-GCTGGTACTATGTGCAGGCCACT
1 CAAGTG-TGGTACTATGTGAAGGCCACT
76501879 GGGTATCCGT
Statistics
Matches: 113, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
49 32 0.28
50 2 0.02
51 41 0.36
52 38 0.34
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGATCA
Found at i:76501869 original size:51 final size:52
Alignment explanation
Indices: 76501700--76501876 Score: 188
Period size: 52 Copynumber: 3.5 Consensus size: 52
76501690 ACTAGTGACT
** *
76501700 CAAGTGTGGTACTATGTGAAGGCC-GCTT-TG-AGAAGAGATAG-CTTGATCA
1 CAAGTGTGGTACTATGTGAAGGCCAATTTATGAAGAA-AGATAGATTTGATCA
* * * *
76501749 CAAATGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGATCA
1 CAAGTGTGGTACTATGTGAAGGCCAATTTATGAAGAAAGATAGATTTGATCA
* *
76501801 CAAGTGTTGTACTATGTGAAGGCCAATTTATGAAG-AAGGTAGATTTGA-CTA
1 CAAGTGTGGTACTATGTGAAGGCCAATTTATGAAGAAAGATAGATTTGATC-A
*
76501852 CAAG-GCTGGTACTATGTGCAGGCCA
1 CAAGTG-TGGTACTATGTGAAGGCCA
76501877 CTGGGTATCC
Statistics
Matches: 110, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
49 23 0.21
50 4 0.04
51 41 0.37
52 42 0.38
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (52 bp):
CAAGTGTGGTACTATGTGAAGGCCAATTTATGAAGAAAGATAGATTTGATCA
Found at i:76505364 original size:51 final size:50
Alignment explanation
Indices: 76505309--76505407 Score: 128
Period size: 50 Copynumber: 2.0 Consensus size: 50
76505299 CTACCACATA
* *
76505309 ACATGTAA-CACATCCATAATGAACTCGGACCTCTCAACGAGCTTGGATGTT
1 ACATG-AATCACATCC-TAATGAACTCAGACCTCTCAACAAGCTTGGATGTT
* * *
76505360 ACATGAATCGCATCCTTATGAACTCAGACCTGTCAACAAGCTTGGATG
1 ACATGAATCACATCCTAATGAACTCAGACCTCTCAACAAGCTTGGATG
76505408 CTGGCATCCA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
50 31 0.74
51 11 0.26
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (50 bp):
ACATGAATCACATCCTAATGAACTCAGACCTCTCAACAAGCTTGGATGTT
Found at i:76507016 original size:44 final size:43
Alignment explanation
Indices: 76506936--76507038 Score: 118
Period size: 44 Copynumber: 2.4 Consensus size: 43
76506926 ATGACTGAAT
* *
76506936 AAATGACACTAAGTGTGCGATATAGATATAAATTCGGTTTAATG
1 AAATGGCACTAAGTGTGCGATATAGATATAAATTCGG-CTAATG
* ** *
76506980 AAATGGCACTAAGTGTGCGATATTA-TTATAGCTTCGGCTAATT
1 AAATGGCACTAAGTGTGCGATA-TAGATATAAATTCGGCTAATG
*
76507023 AATTGGCACTAAGTGT
1 AAATGGCACTAAGTGT
76507039 ACGAGTTCAT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
43 19 0.37
44 30 0.59
45 2 0.04
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (43 bp):
AAATGGCACTAAGTGTGCGATATAGATATAAATTCGGCTAATG
Found at i:76512895 original size:20 final size:21
Alignment explanation
Indices: 76512870--76512909 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
76512860 CACTTGAAGC
76512870 AAGGC-ACACGCCCGTGTGGA
1 AAGGCAACACGCCCGTGTGGA
*
76512890 AAGGCAACACGCTCGTGTGG
1 AAGGCAACACGCCCGTGTGG
76512910 CCACTATGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.25, C:0.28, G:0.35, T:0.12
Consensus pattern (21 bp):
AAGGCAACACGCCCGTGTGGA
Found at i:76533386 original size:3 final size:3
Alignment explanation
Indices: 76533378--76533402 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
76533368 CCACCTTTTG
76533378 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
76533403 GAAGGAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:76536710 original size:85 final size:85
Alignment explanation
Indices: 76536565--76537012 Score: 653
Period size: 85 Copynumber: 5.3 Consensus size: 85
76536555 AGACATTTGC
* * * *
76536565 AAGACCGTGTTTGGGACACATGCCTCGATTGAAATTTACGTATAAGACCATATCTAGGACATCGG
1 AAGACCGTGTCTGGGACACAGGCCTCGATTGAAATTTACGTATAAGACCATGTCTGGGACATCGG
76536630 CATCGTATCTGATTTCGTGT
66 CATCGTATCTGATTTCGTGT
* * * * * *
76536650 AAGACTGTGTCTGGGACACAGGCATCGATTGAAATTTTCATATAAAACCATGTTTGGGACATCGG
1 AAGACCGTGTCTGGGACACAGGCCTCGATTGAAATTTACGTATAAGACCATGTCTGGGACATCGG
*
76536715 CATCGTATCTGATTTCATGT
66 CATCGTATCTGATTTCGTGT
* * * * *
76536735 AAGACCGTGTCTGGGACACAAGCCTCGATTCAAATTTACATATAAAACCATGTCTGGGACATCGA
1 AAGACCGTGTCTGGGACACAGGCCTCGATTGAAATTTACGTATAAGACCATGTCTGGGACATCGG
* *
76536800 CATCATATCTGATTTCATGT
66 CATCGTATCTGATTTCGTGT
* *
76536820 AAGACCATGTCTGGGACACAGGCCTCGATTGAAATTTACGTATAAGGCCATGTCTGGGACATCGG
1 AAGACCGTGTCTGGGACACAGGCCTCGATTGAAATTTACGTATAAGACCATGTCTGGGACATCGG
76536885 CATCGTATCTGATTTCGTGT
66 CATCGTATCTGATTTCGTGT
* * *
76536905 AAGACCGTATCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACAATGTCTGGGACATCGG
1 AAGACCGTGTCTGGGACACAGGCCTCGATTGAAATTTACGTATAAGACCATGTCTGGGACATCGG
*
76536970 CATTGTATCTGATTTCGTGT
66 CATCGTATCTGATTTCGTGT
* * *
76536990 AAGACCCTGCCTGGGACAGAGGC
1 AAGACCGTGTCTGGGACACAGGC
76537013 ATCAATATTG
Statistics
Matches: 325, Mismatches: 38, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
85 325 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (85 bp):
AAGACCGTGTCTGGGACACAGGCCTCGATTGAAATTTACGTATAAGACCATGTCTGGGACATCGG
CATCGTATCTGATTTCGTGT
Found at i:76537014 original size:42 final size:42
Alignment explanation
Indices: 76536598--76537015 Score: 302
Period size: 42 Copynumber: 9.8 Consensus size: 42
76536588 CTCGATTGAA
* * *
76536598 ATTTACGTATAAGACCATATCTAGGACATC-GGCATCGTATCTG
1 ATTT-CGTGTAAGACCATGTCTGGGACA-CAGGCATCGTATCTG
**
76536641 ATTTCGTGTAAGACTGTGTCTGGGACACAGGCATCG-AT-TG
1 ATTTCGTGTAAGACCATGTCTGGGACACAGGCATCGTATCTG
* * * *
76536681 AAATTTTCATATAAAACCATGTTTGGGACATC-GGCATCGTATCTG
1 --A-TTTCGTGTAAGACCATGTCTGGGACA-CAGGCATCGTATCTG
* * * * **
76536726 ATTTCATGTAAGACCGTGTCTGGGACACAAGCCTCG-ATTCAA
1 ATTTCGTGTAAGACCATGTCTGGGACACAGGCATCGTA-TCTG
* * * * *
76536768 ATTTACATATAAAACCATGTCTGGGACATC-GACATCATATCTG
1 ATTT-CGTGTAAGACCATGTCTGGGACA-CAGGCATCGTATCTG
* *
76536811 ATTTCATGTAAGACCATGTCTGGGACACAGGCCTCG-AT-TG
1 ATTTCGTGTAAGACCATGTCTGGGACACAGGCATCGTATCTG
* *
76536851 AAATTTACGTATAAGGCCATGTCTGGGACATC-GGCATCGTATCTG
1 --ATTT-CGTGTAAGACCATGTCTGGGACA-CAGGCATCGTATCTG
* * *
76536896 ATTTCGTGTAAGACCGTATCTGGGACACAGGCCTCG-AT-TGAG
1 ATTTCGTGTAAGACCATGTCTGGGACACAGGCATCGTATCT--G
* * *
76536938 ATTTACGTATAAGACAATGTCTGGGACATC-GGCATTGTATCTG
1 ATTT-CGTGTAAGACCATGTCTGGGACA-CAGGCATCGTATCTG
* * *
76536981 ATTTCGTGTAAGACCCTGCCTGGGACAGAGGCATC
1 ATTTCGTGTAAGACCATGTCTGGGACACAGGCATC
76537016 AATATTGAAT
Statistics
Matches: 294, Mismatches: 54, Indels: 55
0.73 0.13 0.14
Matches are distributed among these distances:
40 5 0.02
41 11 0.04
42 142 0.48
43 120 0.41
44 11 0.04
45 5 0.02
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (42 bp):
ATTTCGTGTAAGACCATGTCTGGGACACAGGCATCGTATCTG
Found at i:76540799 original size:75 final size:75
Alignment explanation
Indices: 76540676--76540825 Score: 273
Period size: 75 Copynumber: 2.0 Consensus size: 75
76540666 ATCATAAAAT
*
76540676 AATTATTTATATCTCAGATTTTATGGTCCCGAAACCTCTGTTCCAACTAGACCCAATTTTGGGCT
1 AATTATTTATATCTCAGATTTTATGGTCCCGAAACCTCTGTTCCAACTAGACCCAAATTTGGGCT
*
76540741 ATTACAACTA
66 ATTAAAACTA
*
76540751 AATTATTTATATCTCAGATTTTGTGGTCCCGAAACCTCTGTTCCAACTAGACCCAAATTTGGGCT
1 AATTATTTATATCTCAGATTTTATGGTCCCGAAACCTCTGTTCCAACTAGACCCAAATTTGGGCT
76540816 ATTAAAACTA
66 ATTAAAACTA
76540826 TTCTATGAAA
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 72 1.00
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (75 bp):
AATTATTTATATCTCAGATTTTATGGTCCCGAAACCTCTGTTCCAACTAGACCCAAATTTGGGCT
ATTAAAACTA
Found at i:76547449 original size:29 final size:29
Alignment explanation
Indices: 76547386--76547453 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
76547376 TAATCAACCG
*
76547386 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
76547415 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
76547444 CGCACACTTA
1 CGCACACTTA
76547454 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:76547623 original size:29 final size:29
Alignment explanation
Indices: 76547560--76547627 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
76547550 TAATCAACCG
76547560 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
76547589 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
76547618 CGCACACTTA
1 CGCACACTTA
76547628 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:76547768 original size:29 final size:30
Alignment explanation
Indices: 76547729--76547807 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
76547719 CTTAATAATC
76547729 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
76547759 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
76547788 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
76547808 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:76547801 original size:174 final size:174
Alignment explanation
Indices: 76547275--76547776 Score: 950
Period size: 174 Copynumber: 2.9 Consensus size: 174
76547265 AACTCAAGGT
* *
76547275 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
76547340 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
76547405 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
76547449 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
76547514 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
76547579 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
76547623 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
76547688 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
*
76547753 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
76547777 TGTACAATTT
Statistics
Matches: 320, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 320 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:76549602 original size:49 final size:49
Alignment explanation
Indices: 76549381--76550271 Score: 1442
Period size: 49 Copynumber: 18.6 Consensus size: 49
76549371 GTTACAGGGA
* * * * *
76549381 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76549428 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76549475 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76549522 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76549569 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76549618 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76549667 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76549716 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76549763 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76549812 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76549861 CTTATCACATATATATACACTTTCACATT-ATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76549909 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76549956 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76550005 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76550054 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76550103 CTTATCAC--ATATATACACTTTCACATTTATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76550150 CTTATCAC--ATATATACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
76550197 CTTATCACATATATATACACTTTCACATTCATCATATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76550246 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
76550272 CACAATTATC
Statistics
Matches: 795, Mismatches: 38, Indels: 22
0.93 0.04 0.03
Matches are distributed among these distances:
46 20 0.03
47 295 0.37
48 25 0.03
49 455 0.57
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:76553729 original size:40 final size:40
Alignment explanation
Indices: 76553697--76554003 Score: 458
Period size: 40 Copynumber: 7.7 Consensus size: 40
76553687 CCAGCATGAT
* * * *
76553697 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
76553737 TGCTCTTCGAGG-TTTAGCACGGATATATTACTAGCACGAA
1 TGCTCTTCG-GGACTTAGCCCGGATACATCACTAGCACGAA
* *
76553777 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
**
76553817 TGCTCTTCGGGACTTAGTTCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
76553857 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
76553897 TGCTCTTCGGGACTTAGCCCGGGTACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
76553937 TGCTCTTCGGGACTTAGCCCGG-TACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
76553976 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
76554004 GTCGAGACCT
Statistics
Matches: 245, Mismatches: 19, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 44 0.18
40 199 0.81
41 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:76556307 original size:25 final size:25
Alignment explanation
Indices: 76556279--76556356 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
76556269 CTCGGCCCTG
76556279 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
** * *** *
76556304 TCACATCGA-CCA-TTAGGC-CTCA
1 TCACATATATACACTTTCACATTCA
76556326 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
76556351 TCACAT
1 TCACAT
76556357 CGGCTATTAG
Statistics
Matches: 36, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 10 0.28
23 5 0.14
24 5 0.14
25 16 0.44
ACGTcount: A:0.33, C:0.31, G:0.04, T:0.32
Consensus pattern (25 bp):
TCACATATATACACTTTCACATTCA
Found at i:76556449 original size:49 final size:49
Alignment explanation
Indices: 76556230--76556972 Score: 1144
Period size: 49 Copynumber: 15.5 Consensus size: 49
76556220 CTTCGGGACA
* * * * * * *
76556230 TATCACAT-T-TATACACTATCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
76556277 TGTCAC--ATATATACACTTTCACATTCATCACATCGACCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
76556324 CATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
76556371 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
76556418 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
76556467 TATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
76556516 TATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
76556563 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
76556612 TATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
76556661 TATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
76556708 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
76556757 TATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
76556806 TATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTACGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
76556853 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* * *
76556900 TATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCA
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
76556949 TATCACATATATATACA--TTCACAT
1 TATCACATATATATACACTTTCACAT
76556973 CACAATTATC
Statistics
Matches: 648, Mismatches: 38, Indels: 20
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 312 0.48
49 335 0.52
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
Found at i:76556462 original size:96 final size:96
Alignment explanation
Indices: 76556230--76556972 Score: 1142
Period size: 96 Copynumber: 7.8 Consensus size: 96
76556220 CTTCGGGACA
* * * * * * * *
76556230 TATCACAT-T-TATACACTATCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
76556293 TTTCACATTCATCACATCGACCATTAGGCCT
66 TTTCACATTCATCACATCGGCCATTAGGCCT
* *
76556324 CATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
76556387 TTTCACATTCATCACATCGGCCATTAGGCCT
66 TTTCACATTCATCACATCGGCCATTAGGCCT
76556418 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
76556483 ACTTTCACATTCATCACATTGGCCATTCGGCCT
64 ACTTTCACATTCATCACATCGGCCATTAGGCCT
*
76556516 TATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
76556579 ACTTTCACATTCATCACATCGGCCATTAGGCCT
64 ACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
76556612 TATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
76556677 TTTCACATTCATCACATCGGCTATTAGGCCT
66 TTTCACATTCATCACATCGGCCATTAGGCCT
76556708 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
76556773 ACTTTCACATTCATCACATTGGCCATTCGGCCT
64 ACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
76556806 TATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTACGCCTTATCACATATATACAC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
76556869 TTTCACATTCATCACATCGGCCATTAGGCCT
66 TTTCACATTCATCACATCGGCCATTAGGCCT
* * * *
76556900 TATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCATATCACATATATATAC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
76556965 ATTCACAT
66 TTTCACAT
76556973 CACAATTATC
Statistics
Matches: 599, Mismatches: 38, Indels: 22
0.91 0.06 0.03
Matches are distributed among these distances:
93 1 0.00
94 130 0.22
96 335 0.56
98 133 0.22
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (96 bp):
TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCT
Found at i:76556535 original size:145 final size:145
Alignment explanation
Indices: 76556230--76556972 Score: 1264
Period size: 145 Copynumber: 5.2 Consensus size: 145
76556220 CTTCGGGACA
* * * * * * * * * *
76556230 TATCACATTTATACACTATCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATACAC
1 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACAC
* *
76556293 TTTCACATTCATCACATCGACCATTAGGCCTCATCAC--ATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
* * *
76556356 TCGGCTATTAGGCCT
131 TTGGCCATTCGGCCT
*
76556371 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACAC
76556436 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
76556501 TTGGCCATTCGGCCT
131 TTGGCCATTCGGCCT
76556516 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACAC
1 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACAC
76556581 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
76556646 TTGGCCATTCGGCCT
131 TTGGCCATTCGGCCT
76556661 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACAC
1 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACAC
76556726 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
76556791 TTGGCCATTCGGCCT
131 TTGGCCATTCGGCCT
*
76556806 TATCACATATATACACTTTCACATTCATCACATCGGCTATTACGCCTTATCAC--ATATATACAC
1 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACAC
76556869 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
76556934 TTGGCCATTCGGCCA
131 TTGGCCATTCGGCCT
* *
76556949 TATCACATATATATACATTCACAT
1 TATCACATATATACACTTTCACAT
76556973 CACAATTATC
Statistics
Matches: 579, Mismatches: 19, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
141 44 0.08
143 156 0.27
145 379 0.65
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (145 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TTGGCCATTCGGCCT
Found at i:76561195 original size:39 final size:39
Alignment explanation
Indices: 76561141--76561266 Score: 189
Period size: 39 Copynumber: 3.2 Consensus size: 39
76561131 TTCAGCGATG
76561141 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
76561180 TATATCCGGACTTAGGGTCCGCAGGCTATGTACTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * * * *
76561219 TATATCCGGACTTAAGGTCTGTAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
76561258 TATGTCCGG
1 TATATCCGG
76561267 GCTAAAGTCC
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 79 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:76561284 original size:39 final size:39
Alignment explanation
Indices: 76561141--76561304 Score: 179
Period size: 39 Copynumber: 4.2 Consensus size: 39
76561131 TTCAGCGATG
* *
76561141 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* * *
76561180 TATATCCGGACTTAGGGTCCGCAGGCTATGTACTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* * *
76561219 TATATCCGGACTTAAGGTCTGTAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* * * * * *
76561258 TATGTCCGGGC-TAAAGTCCCGCAGGCTTCGAGCTGGTAT
1 TATATCCGGACTTAAGGT-CCGCAGGCTACGTGCTGGAAT
76561297 TATA-CCGG
1 TATATCCGG
76561305 GTTTAAATTC
Statistics
Matches: 107, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
38 9 0.08
39 98 0.92
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
Found at i:76564047 original size:51 final size:51
Alignment explanation
Indices: 76563929--76564078 Score: 187
Period size: 51 Copynumber: 3.0 Consensus size: 51
76563919 TATTGTGAGG
* * * *
76563929 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTA--TTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTTGA
* * * * * *
76563978 TCGCATGTGTAGTACTAAGCGTAGGCTACTATGCGTACCCGATAACTTTGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTTGA
*
76564029 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGCTTTG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTTG
76564079 GCTACAACTG
Statistics
Matches: 83, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
49 37 0.45
51 46 0.55
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (51 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTTGA
Found at i:76566613 original size:2 final size:2
Alignment explanation
Indices: 76566606--76566642 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
76566596 GACTGATTAT
76566606 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
76566643 TATATATATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:76569384 original size:50 final size:49
Alignment explanation
Indices: 76569271--76569459 Score: 225
Period size: 50 Copynumber: 3.8 Consensus size: 49
76569261 TGAGGTCGCA
* * * * *
76569271 TGTGTAGTACTAAGTGCAAGCTATTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT-GGTCACG
* * * **
76569322 TGTGTAGCACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT-GGTCACG
* * *
76569372 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACG
*
76569421 TGTATAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
76569460 GCTTTGGCTA
Statistics
Matches: 117, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
49 42 0.36
50 44 0.38
51 31 0.26
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACG
Found at i:76577882 original size:43 final size:42
Alignment explanation
Indices: 76577821--76578168 Score: 268
Period size: 43 Copynumber: 8.3 Consensus size: 42
76577811 AGACATCATG
* *
76577821 TAAGACCGTGTCTGGGACATAGACCTCGATTGAAATTTACGTA
1 TAAGACCATGTCTGGGACATAGGCCTCGATTG-AATTTACGTA
* * * * *
76577864 TAAGACCATGTCTGGGACATCGGCATCG--T--ATCTGCGTG
1 TAAGACCATGTCTGGGACATAGGCCTCGATTGAATTTACGTA
*
76577902 TAAGACCATGTCTGGGACATAGGCCTCGATTGAAATTTATGTA
1 TAAGACCATGTCTGGGACATAGGCCTCGATTG-AATTTACGTA
* * * * * * *
76577945 TATGACTATATCTGGGACATCGGCATCGTATCTG-ATTT-CATG
1 TAAGACCATGTCTGGGACATAGGCCTCG-AT-TGAATTTACGTA
*
76577987 TAAGACCATGTCTGGGACACAGGCCTCGATTGAAATTTACGTA
1 TAAGACCATGTCTGGGACATAGGCCTCGATTG-AATTTACGTA
* * * * *
76578030 TAAGACCATGTCTGGGACA-CGACATCGTATCTG-ATTT-CATG
1 TAAGACCATGTCTGGGACATAGGCCTCG-AT-TGAATTTACGTA
* * *
76578071 TAAGACCATATCTGGGACATAGGCCTCGATTGAGATTTACATT
1 TAAGACCATGTCTGGGACATAGGCCTCGATTGA-ATTTACGTA
* * * *
76578114 TAAGACCATATCTGGGACATCGGCATCGTATCTG-ATTT-CGTG
1 TAAGACCATGTCTGGGACATAGGCCTCG-AT-TGAATTTACGTA
*
76578156 TAAGACCCTGTCT
1 TAAGACCATGTCT
76578169 AGGATAGAGG
Statistics
Matches: 242, Mismatches: 45, Indels: 37
0.75 0.14 0.11
Matches are distributed among these distances:
38 32 0.13
40 5 0.02
41 25 0.10
42 58 0.24
43 112 0.46
44 6 0.02
45 4 0.02
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACATAGGCCTCGATTGAATTTACGTA
Found at i:76578021 original size:85 final size:85
Alignment explanation
Indices: 76577816--76578224 Score: 535
Period size: 85 Copynumber: 4.9 Consensus size: 85
76577806 GTTTGAGACA
* * *
76577816 TCATGTAAGACCGTGTCTGGGACATAGACCTCGATTGAAATTTACGTATAAGACCATGTCTGGGA
1 TCATGTAAGACCATGTCTGGGACATAGGCCTCGATTGAAATTTACGTATAAGACCATATCTGGGA
76577881 CATCGGCATCGTATCTG---
66 CATCGGCATCGTATCTGATT
* * * *
76577898 -CGTGTAAGACCATGTCTGGGACATAGGCCTCGATTGAAATTTATGTATATGACTATATCTGGGA
1 TCATGTAAGACCATGTCTGGGACATAGGCCTCGATTGAAATTTACGTATAAGACCATATCTGGGA
76577962 CATCGGCATCGTATCTGATT
66 CATCGGCATCGTATCTGATT
* *
76577982 TCATGTAAGACCATGTCTGGGACACAGGCCTCGATTGAAATTTACGTATAAGACCATGTCTGGGA
1 TCATGTAAGACCATGTCTGGGACATAGGCCTCGATTGAAATTTACGTATAAGACCATATCTGGGA
*
76578047 CA-CGACATCGTATCTGATT
66 CATCGGCATCGTATCTGATT
* * * *
76578066 TCATGTAAGACCATATCTGGGACATAGGCCTCGATTGAGATTTACATTTAAGACCATATCTGGGA
1 TCATGTAAGACCATGTCTGGGACATAGGCCTCGATTGAAATTTACGTATAAGACCATATCTGGGA
76578131 CATCGGCATCGTATCTGATT
66 CATCGGCATCGTATCTGATT
* * * * * * * * *
76578151 TCGTGTAAGACCCTGTCTAGGATAGAGGCTTCGATATTG-AA-TTACATGTAAGACCACATCTGG
1 TCATGTAAGACCATGTCTGGGACATAGGCCTCG--ATTGAAATTTACGTATAAGACCATATCTGG
*
76578214 GACGTCGGCAT
64 GACATCGGCAT
76578225 TGTACTTGTT
Statistics
Matches: 288, Mismatches: 32, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
81 74 0.26
84 77 0.27
85 132 0.46
86 1 0.00
87 4 0.01
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.29
Consensus pattern (85 bp):
TCATGTAAGACCATGTCTGGGACATAGGCCTCGATTGAAATTTACGTATAAGACCATATCTGGGA
CATCGGCATCGTATCTGATT
Found at i:76578148 original size:169 final size:166
Alignment explanation
Indices: 76577816--76578168 Score: 537
Period size: 169 Copynumber: 2.1 Consensus size: 166
76577806 GTTTGAGACA
* *
76577816 TCATGTAAGACCGTGTCTGGGACATAGACCTCGATTGAAATTTACGTATAAGACCATGTCTGGGA
1 TCATGTAAGACCATGTCTGGGACACAGACCTCGATTGAAATTTACGTATAAGACCATGTCTGGGA
* * * **
76577881 CATCGGCATCGTATCTGCGTGTAAGACCATGTCTGGGACATAGGCCTCGATTGAAATTTATGTAT
66 CATCGACATCGTATCTGCATGTAAGACCATATCTGGGACATAGGCCTCGATTGAAATTTACATAT
* *
76577946 ATGACTATATCTGGGACATCGGCATCGTATCTGATT
131 AAGACCATATCTGGGACATCGGCATCGTATCTGATT
*
76577982 TCATGTAAGACCATGTCTGGGACACAGGCCTCGATTGAAATTTACGTATAAGACCATGTCTGGGA
1 TCATGTAAGACCATGTCTGGGACACAGACCTCGATTGAAATTTACGTATAAGACCATGTCTGGGA
*
76578047 CA-CGACATCGTATCTGATTTCATGTAAGACCATATCTGGGACATAGGCCTCGATTGAGATTTAC
66 CATCGACATCGTATCTG----CATGTAAGACCATATCTGGGACATAGGCCTCGATTGAAATTTAC
*
76578111 ATTTAAGACCATATCTGGGACATCGGCATCGTATCTGATT
127 ATATAAGACCATATCTGGGACATCGGCATCGTATCTGATT
* *
76578151 TCGTGTAAGACCCTGTCT
1 TCATGTAAGACCATGTCT
76578169 AGGATAGAGG
Statistics
Matches: 169, Mismatches: 14, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
165 13 0.08
166 64 0.38
169 92 0.54
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (166 bp):
TCATGTAAGACCATGTCTGGGACACAGACCTCGATTGAAATTTACGTATAAGACCATGTCTGGGA
CATCGACATCGTATCTGCATGTAAGACCATATCTGGGACATAGGCCTCGATTGAAATTTACATAT
AAGACCATATCTGGGACATCGGCATCGTATCTGATT
Found at i:76578205 original size:169 final size:166
Alignment explanation
Indices: 76577816--76578216 Score: 511
Period size: 169 Copynumber: 2.4 Consensus size: 166
76577806 GTTTGAGACA
* * * * *
76577816 TCATGTAAGACCGTGTCTGGGACATAGACCTCGATTGAAATTTACGTATAAGACCATGTCTGGGA
1 TCATGTAAGACCATGTCTAGGACACAGGCCTCGATTGAAATTTACATATAAGACCATGTCTGGGA
* * * **
76577881 CATCGGCATCGTATCTGCGTGTAAGACCATGTCTGGGACATAGGCCTCGATTGAAATTTATGTAT
66 CATCGACATCGTATCTGCATGTAAGACCATATCTGGGACATAGGCCTCGATTGAAATTTACATAT
* *
76577946 ATGACTATATCTGGGACATCGGCATCGTATCTGATT
131 AAGACCATATCTGGGACATCGGCATCGTATCTGATT
* *
76577982 TCATGTAAGACCATGTCTGGGACACAGGCCTCGATTGAAATTTACGTATAAGACCATGTCTGGGA
1 TCATGTAAGACCATGTCTAGGACACAGGCCTCGATTGAAATTTACATATAAGACCATGTCTGGGA
*
76578047 CA-CGACATCGTATCTGATTTCATGTAAGACCATATCTGGGACATAGGCCTCGATTGAGATTTAC
66 CATCGACATCGTATCTG----CATGTAAGACCATATCTGGGACATAGGCCTCGATTGAAATTTAC
*
76578111 ATTTAAGACCATATCTGGGACATCGGCATCGTATCTGATT
127 ATATAAGACCATATCTGGGACATCGGCATCGTATCTGATT
* * * * * * **
76578151 TCGTGTAAGACCCTGTCTAGGATAGAGGCTTCGATATTG-AA-TTACATGTAAGACCACATCTGG
1 TCATGTAAGACCATGTCTAGGACACAGGCCTCG--ATTGAAATTTACATATAAGACCATGTCTGG
76578214 GAC
64 GAC
76578217 GTCGGCATTG
Statistics
Matches: 207, Mismatches: 22, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
165 13 0.06
166 64 0.31
169 124 0.60
170 2 0.01
171 4 0.02
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (166 bp):
TCATGTAAGACCATGTCTAGGACACAGGCCTCGATTGAAATTTACATATAAGACCATGTCTGGGA
CATCGACATCGTATCTGCATGTAAGACCATATCTGGGACATAGGCCTCGATTGAAATTTACATAT
AAGACCATATCTGGGACATCGGCATCGTATCTGATT
Found at i:76594145 original size:15 final size:14
Alignment explanation
Indices: 76594126--76594180 Score: 56
Period size: 15 Copynumber: 3.7 Consensus size: 14
76594116 ATTTTCTTGT
*
76594126 TTTGGATTTCTTTA
1 TTTGGATTTCTATA
76594140 TGTTGGATTTCTATA
1 T-TTGGATTTCTATA
* *
76594155 TTCTGGATTTCTCTG
1 TT-TGGATTTCTATA
76594170 TTATGGATTTC
1 TT-TGGATTTC
76594181 CTTAGCTTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
14 2 0.06
15 33 0.94
ACGTcount: A:0.15, C:0.11, G:0.18, T:0.56
Consensus pattern (14 bp):
TTTGGATTTCTATA
Found at i:76598108 original size:40 final size:40
Alignment explanation
Indices: 76597885--76598094 Score: 323
Period size: 40 Copynumber: 5.3 Consensus size: 40
76597875 TCCTCGTTCA
* * * * *
76597885 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
76597924 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
76597964 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
76598004 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
76598044 AATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
76598084 AAGGCCTTCGG
1 AATGCCTTCGG
76598095 ATCTTAGTCC
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 34 0.21
40 126 0.79
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:76598131 original size:80 final size:80
Alignment explanation
Indices: 76597888--76598147 Score: 274
Period size: 80 Copynumber: 3.3 Consensus size: 80
76597878 TCGTTCAAAT
* * * * * * * *
76597888 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* * *
76597952 ACAACTCGCACGAAT
66 ATAACTAGCACGAAA
* * *
76597967 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
76598032 ATAACTCGCACGAAT
66 ATAACTAGCACGAAA
* **
76598047 GCCTTCGGGACTTAACCCGGATTTAATATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATAT
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATAT
* **
76598111 ATTCGCTTAGCAC-AAA
65 AATAAC-TAGCACGAAA
*
76598127 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
76598148 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
79 34 0.21
80 120 0.75
81 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
ATAACTAGCACGAAA
Found at i:76598131 original size:120 final size:118
Alignment explanation
Indices: 76597883--76598147 Score: 316
Period size: 120 Copynumber: 2.2 Consensus size: 118
76597873 GCTCCTCGTT
* * *
76597883 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAA-GCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGA
* * * *
76597948 TTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
65 TTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCA
* * * *
76598002 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 C-AAAGCCTTCGGGACTTAGCCCGGATTTAATAACTCACAC-AATGCCTTCGGGACATAACCCGG
* * ** * **
76598067 ATTTAATATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATATATTCGCTTAGCA
64 ATTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATATAATAAC-TAGCA
76598123 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
76598148 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 35 0.29
120 82 0.67
121 5 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (118 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGAT
TTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCA
Found at i:76606057 original size:40 final size:40
Alignment explanation
Indices: 76605834--76606043 Score: 314
Period size: 40 Copynumber: 5.3 Consensus size: 40
76605824 TCCTCGTTCA
* * * ** *
76605834 AATGCCTTCGGGACATAGCCCGGTTTTAGCAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
76605873 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
76605913 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
76605953 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
76605993 AATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
76606033 AAGGCCTTCGG
1 AATGCCTTCGG
76606044 ATCTTAGTCC
Statistics
Matches: 161, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 35 0.22
40 126 0.78
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:76606080 original size:80 final size:80
Alignment explanation
Indices: 76605837--76606096 Score: 265
Period size: 80 Copynumber: 3.3 Consensus size: 80
76605827 TCGTTCAAAT
* * * ** * * * *
76605837 GCCTTCGGGACATAGCCCGGTTTTAGCAACTCACAC-AATGCCTTCGGGACATAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* * *
76605901 ACAACTCGCACGAAT
66 ATAACTAGCACGAAA
* * *
76605916 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
76605981 ATAACTCGCACGAAT
66 ATAACTAGCACGAAA
* **
76605996 GCCTTCGGGACTTAACCCGGATTTAATATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATAT
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATAT
* **
76606060 ATTCGCTTAGCAC-AAA
65 AATAAC-TAGCACGAAA
*
76606076 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
76606097 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
79 33 0.21
80 120 0.76
81 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
ATAACTAGCACGAAA
Found at i:76606080 original size:120 final size:118
Alignment explanation
Indices: 76605832--76606096 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 118
76605822 GCTCCTCGTT
* * *
76605832 CAAATGCCTTCGGGACATAGCCCGGTTTTAGCAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAA-GCCTTCGGGACTTAGCCCGGATTTAACAACTCACACAATGCCTTCGGGACATAACCCGGA
* * * *
76605897 TTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
65 TTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCA
* * * * *
76605951 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 C-AAAGCCTTCGGGACTTAGCCCGGATTTAACAACTCACAC-AATGCCTTCGGGACATAACCCGG
* * ** * **
76606016 ATTTAATATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATATATTCGCTTAGCA
64 ATTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATATAATAAC-TAGCA
76606072 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
76606097 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
119 34 0.28
120 82 0.68
121 5 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (118 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAACAACTCACACAATGCCTTCGGGACATAACCCGGAT
TTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCA
Found at i:76607693 original size:50 final size:51
Alignment explanation
Indices: 76607569--76607755 Score: 189
Period size: 50 Copynumber: 3.7 Consensus size: 51
76607559 TTGTGAGAAA
* ***
76607569 ACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAAGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATGG-TTTAAGTC
* * * * *
76607621 ACGTGTGTAGTACTAAGCGCAGGCTACTACGTGTACCAGATGG-TTATGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATGGTTTAAGTC
* * * * *
76607671 GCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCTAATAGCTT-CGATC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATGGTTTAAG-TC
* * *
76607722 ACATGTGTGGTATTAAGTGCAGGCCACTATGTGT
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGT
76607756 CAAAGATAGC
Statistics
Matches: 112, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
50 43 0.38
51 34 0.30
52 35 0.31
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.33
Consensus pattern (51 bp):
ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATGGTTTAAGTC
Found at i:76607765 original size:51 final size:51
Alignment explanation
Indices: 76607569--76607850 Score: 151
Period size: 51 Copynumber: 5.5 Consensus size: 51
76607559 TTGTGAGAAA
* * * ** * * **
76607569 ACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAAGTC
1 ACATGTGTGGTACTAAGTGCAGGCCACTATGTGTACAAAATAGCTTCGA-TC
* * * * * * * * *
76607621 ACGTGTGTAGTACTAAGCGCAGGCTACTACGTGTACCAGAT-GGTTATG-TC
1 ACATGTGTGGTACTAAGTGCAGGCCACTATGTGTACAAAATAGCTT-CGATC
* * * **
76607671 GCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCTAATAGCTTCGATC
1 ACATGTGTGGTACTAAGTGCAGGCCACTATGTGTACAAAATAGCTTCGATC
* * *
76607722 ACATGTGTGGTATTAAGTGCAGGCCACTATGTGT-CAAAGATAGCTTTGGTC
1 ACATGTGTGGTACTAAGTGCAGGCCACTATGTGTACAAA-ATAGCTTCGATC
* * * * * * * ** *
76607773 ACAAGTGTGGTACTATGTGAAGGTCACTTTGTGAAGAAGGTAGCTTTGA-C
1 ACATGTGTGGTACTAAGTGCAGGCCACTATGTGTACAAAATAGCTTCGATC
*
76607823 TACAATG-GTGGTACTATGTGCAGGCCAC
1 -AC-ATGTGTGGTACTAAGTGCAGGCCAC
76607851 CGGGCATCCG
Statistics
Matches: 183, Mismatches: 40, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
50 41 0.22
51 104 0.57
52 38 0.21
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (51 bp):
ACATGTGTGGTACTAAGTGCAGGCCACTATGTGTACAAAATAGCTTCGATC
Found at i:76610196 original size:15 final size:15
Alignment explanation
Indices: 76610176--76610206 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
76610166 TGTAACACCC
76610176 TATACTGGCCCTAGT
1 TATACTGGCCCTAGT
76610191 TATACTGGCCCTAGT
1 TATACTGGCCCTAGT
76610206 T
1 T
76610207 TCCAAGCCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.35
Consensus pattern (15 bp):
TATACTGGCCCTAGT
Found at i:76614173 original size:20 final size:21
Alignment explanation
Indices: 76614148--76614186 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
76614138 CCCTTGAAAC
76614148 AGGGC-ACACGCCCGTGTGAG
1 AGGGCAACACGCCCGTGTGAG
76614168 AGGGCAACACGCCCGTGTG
1 AGGGCAACACGCCCGTGTG
76614187 TTCATTATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.21, C:0.31, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGAG
Found at i:76615405 original size:47 final size:46
Alignment explanation
Indices: 76615336--76615607 Score: 164
Period size: 47 Copynumber: 5.8 Consensus size: 46
76615326 TATAATGCTG
*
76615336 ATGCCATGTCCAAGACATGGTCTTACACTGGCTCTCATGTTAAGTCA
1 ATGCCATGTCC-AGACATGGTCTTACACTGGCTCTCATGTTAAGCCA
* * * *
76615383 ATGCCATGTCTCAGACATGGTCTTACAATGACTCTCACGTTTCATA-CCG
1 ATGCCATGTC-CAGACATGGTCTTACACTGGCTCTCATG-TT-A-AGCCA
* * * * * *
76615432 ACGCCATATCCCAGAGATGGTCTTACACTGACACATCATG-T-AGCTA
1 ATGCCATGT-CCAGACATGGTCTTACACTGGCTC-TCATGTTAAGCCA
* * * * *
76615478 ATG-CATGTCCCAAACAT-GTCTTACACTGGCT-TACATCTCGAGGCCG
1 ATGCCATGT-CCAGACATGGTCTTACACTGGCTCT-CATGT-TAAGCCA
* * * * *
76615524 ATG-CATGTCTCGGACAT-GTCTTACACTAGCTCTCGTCTCAATGCCA
1 ATGCCATGTC-CAGACATGGTCTTACACTGGCTCTCATGTTAA-GCCA
* *
76615570 ATGTCATGTCCTAAACATGGTCTTACACTGGCTCTCAT
1 ATGCCATGTCC-AGACATGGTCTTACACTGGCTCTCAT
76615608 AATGTAGCCG
Statistics
Matches: 173, Mismatches: 35, Indels: 33
0.72 0.15 0.14
Matches are distributed among these distances:
42 1 0.01
43 3 0.02
44 12 0.07
45 14 0.08
46 42 0.24
47 45 0.26
48 21 0.12
49 29 0.17
50 6 0.03
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (46 bp):
ATGCCATGTCCAGACATGGTCTTACACTGGCTCTCATGTTAAGCCA
Found at i:76615529 original size:46 final size:45
Alignment explanation
Indices: 76615478--76615644 Score: 167
Period size: 46 Copynumber: 3.6 Consensus size: 45
76615468 CATGTAGCTA
76615478 ATGCATGTCCCAAACATGTCTTACACTGGCT-TACATCTCGAGGCCG
1 ATGCATGTCCCAAACATGTCTTACACTGGCTCT-CATCTCGA-GCCG
* ** * * * *
76615524 ATGCATGTCTCGGACATGTCTTACACTAGCTCTCGTCTCAATGCCA
1 ATGCATGTCCCAAACATGTCTTACACTGGCTCTCATCTCGA-GCCG
* *
76615570 ATGTCATGTCCTAAACATGGTCTTACACTGGCTCTCATAAT-GTAGCCG
1 ATG-CATGTCCCAAACAT-GTCTTACACTGGCTCTCAT-CTCG-AGCCG
*
76615618 ATGCATGTCCCAAACATCTCTTACACT
1 ATGCATGTCCCAAACATGTCTTACACT
76615645 AGCACACAAA
Statistics
Matches: 97, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
46 48 0.49
47 24 0.25
48 23 0.24
49 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (45 bp):
ATGCATGTCCCAAACATGTCTTACACTGGCTCTCATCTCGAGCCG
Found at i:76615618 original size:94 final size:92
Alignment explanation
Indices: 76615477--76615647 Score: 222
Period size: 94 Copynumber: 1.8 Consensus size: 92
76615467 TCATGTAGCT
* * ** *
76615477 AATGCATGTCCCAAACATGTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCTCGGACATG
1 AATGCATGTCCCAAACATGTCTTACACTGGCTTACATATCGAGGCCGATGCATGTCCCAAACATC
76615542 TCTTACACTAGCTCTCGTCTCAATGCC
66 TCTTACACTAGCTCTCGTCTCAATGCC
*
76615569 AATGTCATGTCCTAAACATGGTCTTACACTGGCTCT-CATAAT-GTA-GCCGATGCATGTCCCAA
1 AATG-CATGTCCCAAACAT-GTCTTACACTGGCT-TACAT-ATCG-AGGCCGATGCATGTCCCAA
76615631 ACATCTCTTACACTAGC
61 ACATCTCTTACACTAGC
76615648 ACACAAATAT
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
92 4 0.06
93 13 0.19
94 48 0.71
95 3 0.04
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (92 bp):
AATGCATGTCCCAAACATGTCTTACACTGGCTTACATATCGAGGCCGATGCATGTCCCAAACATC
TCTTACACTAGCTCTCGTCTCAATGCC
Found at i:76619875 original size:44 final size:44
Alignment explanation
Indices: 76619812--76619939 Score: 136
Period size: 44 Copynumber: 2.9 Consensus size: 44
76619802 ACATGTATCA
* *
76619812 CATCCATAATGATCTCGGACCAACTCAACGAGCTCGGATGCTCG
1 CATCCATAATGAACTCGGACCAACTCAACGAGCTCAGATGCTCG
* * *
76619856 CATCCATAATGAACTCGGACGAACTCAATGAGCTCAGATGC-CT
1 CATCCATAATGAACTCGGACCAACTCAACGAGCTCAGATGCTCG
* *
76619899 CA-CACATATCACGAAC-CTGGACCAACTCAACGAGTTCAGAT
1 CATC-CATA--ATGAACTC-GGACCAACTCAACGAGCTCAGAT
76619940 TTCTAAATTC
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
42 1 0.01
43 7 0.10
44 38 0.54
45 25 0.35
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.20
Consensus pattern (44 bp):
CATCCATAATGAACTCGGACCAACTCAACGAGCTCAGATGCTCG
Found at i:76621991 original size:26 final size:26
Alignment explanation
Indices: 76621947--76622044 Score: 153
Period size: 26 Copynumber: 3.8 Consensus size: 26
76621937 CCTCTTTAAT
*
76621947 AACTGAGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
76621972 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
76621998 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
76622024 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
76622045 GCACTTCCTC
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
25 9 0.14
26 57 0.86
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:76622024 original size:52 final size:51
Alignment explanation
Indices: 76621947--76622044 Score: 169
Period size: 52 Copynumber: 1.9 Consensus size: 51
76621937 CCTCTTTAAT
*
76621947 AACTGAGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGAGGCAAAGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTA
*
76621998 AACTGGGGCATAAGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTT
1 AACTGAGGCA-AAGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTT
76622045 GCACTTCCTC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
51 9 0.20
52 35 0.80
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (51 bp):
AACTGAGGCAAAGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTA
Found at i:76622149 original size:20 final size:20
Alignment explanation
Indices: 76622094--76622160 Score: 89
Period size: 20 Copynumber: 3.4 Consensus size: 20
76622084 TTATGAATTC
* * *
76622094 ATCATGTGCATTTCAGACAT
1 ATCATGTGCATATCATACCT
76622114 ATCATGTGCATATCATACCT
1 ATCATGTGCATATCATACCT
* *
76622134 ATCATGTGCATATCATATCA
1 ATCATGTGCATATCATACCT
76622154 ATCATGT
1 ATCATGT
76622161 ATCAAATATA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACCT
Found at i:76622208 original size:25 final size:25
Alignment explanation
Indices: 76622180--76622227 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
76622170 ATAATTAAAT
* * *
76622180 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
76622205 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
76622228 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:76632004 original size:28 final size:28
Alignment explanation
Indices: 76631929--76632038 Score: 109
Period size: 27 Copynumber: 4.0 Consensus size: 28
76631919 TGGCTACCAG
* ** *
76631929 AACAGATA-TTGTGACAGAATCACCAGA
1 AACAGATATTTGTGGCAGAGCCACTAGA
*
76631956 TACAGATA-TTGTGGCAGAGCCACTAGA
1 AACAGATATTTGTGGCAGAGCCACTAGA
*
76631983 AACAGATATTTGTGGCAAAGCCACTAG-
1 AACAGATATTTGTGGCAGAGCCACTAGA
* * * *
76632010 ATCAAATATTTGTGGTAGAGCCACCAGA
1 AACAGATATTTGTGGCAGAGCCACTAGA
76632038 A
1 A
76632039 CGCTTCCTCC
Statistics
Matches: 69, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
27 51 0.74
28 18 0.26
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (28 bp):
AACAGATATTTGTGGCAGAGCCACTAGA
Found at i:76653922 original size:47 final size:47
Alignment explanation
Indices: 76653868--76654223 Score: 590
Period size: 47 Copynumber: 7.6 Consensus size: 47
76653858 TATTTGAATA
76653868 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
76653915 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
76653962 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
76654011 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
76654058 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
76654105 AATGTGAAAGTG--TATATGTGATAAGGCCTAGTGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
76654150 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
76654197 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
76654224 TCCCGAAGGG
Statistics
Matches: 293, Mismatches: 12, Indels: 8
0.94 0.04 0.03
Matches are distributed among these distances:
45 44 0.15
47 204 0.70
49 45 0.15
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:76653994 original size:96 final size:94
Alignment explanation
Indices: 76653868--76654223 Score: 590
Period size: 96 Copynumber: 3.8 Consensus size: 94
76653858 TATTTGAATA
76653868 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
76653933 TGTGATAAGGCCGAATGGCCAATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
76653962 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
76654027 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
76654058 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
76654121 TGTGATAAGGCCTAGTGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
76654150 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
76654215 TGTGATAAG
66 TGTGATAAG
76654224 TCCCGAAGGG
Statistics
Matches: 248, Mismatches: 10, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
92 85 0.34
94 71 0.29
96 92 0.37
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:76654030 original size:143 final size:139
Alignment explanation
Indices: 76653868--76654223 Score: 586
Period size: 143 Copynumber: 2.5 Consensus size: 139
76653858 TATTTGAATA
76653868 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
76653933 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG----TATATGTGATAAGGCCTAAT
76653998 GGCCGATGTGATG
127 GGCCGATGTGATG
76654011 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
76654076 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAGTGGCC
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAATGGCC
76654141 GATGTGATG
131 GATGTGATG
* * * * * * *
76654150 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
76654215 TGTGATAAG
66 TGTGATAAG
76654224 TCCCGAAGGG
Statistics
Matches: 203, Mismatches: 10, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
139 99 0.49
143 104 0.51
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (139 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAATGGCC
GATGTGATG
Found at i:76654517 original size:37 final size:37
Alignment explanation
Indices: 76654342--76654516 Score: 314
Period size: 37 Copynumber: 4.7 Consensus size: 37
76654332 CCGAGCTCTA
*
76654342 AAGACCCGATGACTACGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
76654379 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
76654416 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
76654453 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
76654490 AAGACCCGATAACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
76654517 TCGTCTGAGC
Statistics
Matches: 134, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:76659763 original size:22 final size:22
Alignment explanation
Indices: 76659726--76659769 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
76659716 TAGGAATTAG
76659726 GGTGTGTCGTTTTCTCT-TTTT
1 GGTGTGTCGTTTTCTCTCTTTT
*
76659747 GGTGTAGTCTTTTTCTCTCTTTT
1 GGTGT-GTCGTTTTCTCTCTTTT
76659770 CTTTTCCAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 5 0.25
22 11 0.55
23 4 0.20
ACGTcount: A:0.02, C:0.16, G:0.20, T:0.61
Consensus pattern (22 bp):
GGTGTGTCGTTTTCTCTCTTTT
Found at i:76660916 original size:25 final size:24
Alignment explanation
Indices: 76660883--76660930 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
76660873 TTATAATATG
* * *
76660883 AAAATGACTGTTTTGCCCCTAGGT
1 AAAATGACTATTATACCCCTAGGT
76660907 AAAAGTGACTATTATACCCCTAGG
1 AAAA-TGACTATTATACCCCTAGG
76660931 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (24 bp):
AAAATGACTATTATACCCCTAGGT
Found at i:76660991 original size:20 final size:20
Alignment explanation
Indices: 76660956--76661032 Score: 88
Period size: 20 Copynumber: 4.0 Consensus size: 20
76660946 TGATACGTGG
76660956 GATATGATAT--ACATGATT
1 GATATGATATGCACATGATT
**
76660974 GATATGATATGCACATGAAA
1 GATATGATATGCACATGATT
*
76660994 GGTATGATATGCACATGATAT
1 GATATGATATGCACATGAT-T
*
76661015 G-TATGAAATGCACATGAT
1 GATATGATATGCACATGAT
76661033 GTATTCATAA
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
18 10 0.20
20 39 0.78
21 1 0.02
ACGTcount: A:0.39, C:0.09, G:0.21, T:0.31
Consensus pattern (20 bp):
GATATGATATGCACATGATT
Found at i:76661111 original size:26 final size:26
Alignment explanation
Indices: 76661082--76661191 Score: 138
Period size: 26 Copynumber: 4.3 Consensus size: 26
76661072 GAGGAAGTGC
*
76661082 AAAAGGGCTTATGCCTCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
76661108 AAAAGGGCTTATGCCCCAGTTCATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
76661134 AAAAAGGCTTATGCCCCAGTTTA-TC
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
76661159 AAAAGGGCTT-TGCACCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
76661182 AAAAGAGGCT
1 AAAAG-GGCT
76661192 AGGCCTCCAG
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
23 8 0.11
24 12 0.16
25 10 0.13
26 45 0.60
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:76668701 original size:20 final size:19
Alignment explanation
Indices: 76668668--76668746 Score: 92
Period size: 20 Copynumber: 4.2 Consensus size: 19
76668658 ATACGTGGGA
76668668 TATGATAT--ACATGATTG
1 TATGATATGCACATGATTG
*
76668685 ATATGATATGCACATGACATG
1 -TATGATATGCACATGA-TTG
76668706 TATGATATGCACATGATATG
1 TATGATATGCACATGAT-TG
*
76668726 TATGAAATGCACATGA-TG
1 TATGATATGCACATGATTG
76668744 TAT
1 TAT
76668747 TTATAAATGC
Statistics
Matches: 54, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
18 13 0.24
20 39 0.72
21 2 0.04
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.34
Consensus pattern (19 bp):
TATGATATGCACATGATTG
Found at i:76679548 original size:28 final size:28
Alignment explanation
Indices: 76679511--76679575 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
76679501 TCAGTGTACG
* * *
76679511 AAATTTTGAGAATGGCACTTAATGTGCG
1 AAATATTGAGAATGACACTTAATGTGCA
* *
76679539 AGATATTGAGAATGACACTTAGTGTGCA
1 AAATATTGAGAATGACACTTAATGTGCA
76679567 AAATATTGA
1 AAATATTGA
76679576 ATGATTAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.37, C:0.09, G:0.23, T:0.31
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAATGTGCA
Found at i:76679805 original size:39 final size:40
Alignment explanation
Indices: 76679653--76679995 Score: 296
Period size: 39 Copynumber: 8.8 Consensus size: 40
76679643 TATAATGGTG
* * **
76679653 TTATATCCGGGC-T-AAGTCCCGAAGGCATTCGTGCTAGTG
1 TTATATCCGGGCTTAAAGTCCCGCAGGC-TTCGTGCTGGAA
** * **
76679692 TTATATCCGGGC-T-AAGTCCCAAAGGCATTCGTGCTTGTG
1 TTATATCCGGGCTTAAAGTCCCGCAGGC-TTCGTGCTGGAA
* **
76679731 TTATATCCGGGC--AAAG-CCCTGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTTAAAGTCCC-GCAGGC-TTCGTGCTGGAA
*
76679770 TTATATCCGGGC-TAAAGTCCCGCAGGCTTTGTGCTGGAA
1 TTATATCCGGGCTTAAAGTCCCGCAGGCTTCGTGCTGGAA
* * *
76679809 TTGTATCCGGACTTAAGGT-CCGCAGGCTTCGTGCTGGAA
1 TTATATCCGGGCTTAAAGTCCCGCAGGCTTCGTGCTGGAA
* * *
76679848 TTGTATCCGGACTTAAGGT-CCGCAGGCTTCGTGCTGGAA
1 TTATATCCGGGCTTAAAGTCCCGCAGGCTTCGTGCTGGAA
* * *
76679887 TTGTATCCGGACTTAAGGT-CCGCAGGCTTCGTGCTGGAA
1 TTATATCCGGGCTTAAAGTCCCGCAGGCTTCGTGCTGGAA
* * * * *
76679926 TTGTATTCGGGCTTAAAGACCCGTAGGCTAT-ATGCTGGAA
1 TTATATCCGGGCTTAAAGTCCCGCAGGCT-TCGTGCTGGAA
* *
76679966 TTATATCCGGGCTTAAAGACCCGTAGGCTT
1 TTATATCCGGGCTTAAAGTCCCGCAGGCTT
76679996 TGTGTTGGTG
Statistics
Matches: 277, Mismatches: 20, Indels: 14
0.89 0.06 0.05
Matches are distributed among these distances:
38 3 0.01
39 213 0.77
40 57 0.21
41 4 0.01
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (40 bp):
TTATATCCGGGCTTAAAGTCCCGCAGGCTTCGTGCTGGAA
Found at i:76686083 original size:27 final size:27
Alignment explanation
Indices: 76686033--76686084 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
76686023 ACCCTTTCAT
* ***
76686033 CCCATGTTTAATGTTCTGGTAGACTAC
1 CCCATGTTTAATGTCCTAACAGACTAC
76686060 CCCATGTTTAATGTCCTAACAGACT
1 CCCATGTTTAATGTCCTAACAGACT
76686085 CTGTTGGTTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (27 bp):
CCCATGTTTAATGTCCTAACAGACTAC
Found at i:76690210 original size:47 final size:47
Alignment explanation
Indices: 76690108--76690548 Score: 600
Period size: 47 Copynumber: 9.6 Consensus size: 47
76690098 CCCTTCGAGA
* * * * * * *
76690108 CTTATCACATTTATACACTTTCACATCCATAACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
76690155 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76690202 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76690249 CTTATCACATATATATACACTTTCACACTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76690298 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76690345 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76690392 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76690441 CTTATCACATATATACACTTT--CA--CAT----T----CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76690476 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76690523 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
76690549 CACAATTATC
Statistics
Matches: 354, Mismatches: 24, Indels: 32
0.86 0.06 0.08
Matches are distributed among these distances:
35 28 0.08
37 2 0.01
39 4 0.01
43 4 0.01
45 2 0.01
47 224 0.63
49 90 0.25
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Done.