Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 233 of 333
Found at i:76690305 original size:96 final size:94
Alignment explanation
Indices: 76690108--76690548 Score: 600
Period size: 96 Copynumber: 4.8 Consensus size: 94
76690098 CCCTTCGAGA
* * * * * * * * *
76690108 CTTATCACATTTATACACTTTCACATCCATAACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
76690173 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
76690202 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
76690267 ACTTTCACACTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
76690298 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTCATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
76690363 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
76690392 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
76690457 ACTTT--CA--CAT----T----CATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
76690476 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
76690541 ATTCACAT
66 TTTCACAT
76690549 CACAATTATC
Statistics
Matches: 316, Mismatches: 24, Indels: 23
0.87 0.07 0.06
Matches are distributed among these distances:
82 56 0.18
84 18 0.06
88 1 0.00
92 3 0.01
94 93 0.29
96 145 0.46
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:76690377 original size:143 final size:142
Alignment explanation
Indices: 76690108--76690550 Score: 659
Period size: 143 Copynumber: 3.2 Consensus size: 142
76690098 CCCTTCGAGA
* * * *
76690108 CTTATCACAT-T-TATACACTTTCACATCCATAACGTTGGCCACTCGGCC-CTGTCACATATATA
1 CTTATCACATATATATACACTTTCACAT-CATCACATTGGCCATTCGGCCTC-ATCACATATATA
76690170 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
64 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
76690235 ATCGGCCATTAGGC
129 ATCGGCCATTAGGC
* *
76690249 CTTATCACATATATATACACTTTCACACTCATCACATCGGCCATTAGGCCTCATCACATATATAC
1 CTTATCACATATATATACACTTTCACA-TCATCACATTGGCCATTCGGCCTCATCACATATATAC
*
76690314 ACTTTCACATTCATCACATCGGCTATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
76690379 TCGGCCATTAGGC
130 TCGGCCATTAGGC
*
76690392 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACA-TCATCACATTGGCCATTCGGCCTCATCACATATATAC
76690457 ACTTT--CA--CAT----T---C-ATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
76690510 TCGGCCATTAGGC
130 TCGGCCATTAGGC
76690523 CTTATCACATATATATACA--TTCACATCA
1 CTTATCACATATATATACACTTTCACATCA
76690551 CAATTATCCA
Statistics
Matches: 286, Mismatches: 12, Indels: 21
0.90 0.04 0.07
Matches are distributed among these distances:
128 3 0.01
129 6 0.02
131 72 0.25
132 1 0.00
135 1 0.00
139 3 0.01
141 12 0.04
142 1 0.00
143 185 0.65
144 2 0.01
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (142 bp):
CTTATCACATATATATACACTTTCACATCATCACATTGGCCATTCGGCCTCATCACATATATACA
CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGC
Found at i:76690466 original size:16 final size:16
Alignment explanation
Indices: 76690445--76690501 Score: 55
Period size: 16 Copynumber: 3.4 Consensus size: 16
76690435 TTCGGCCTTA
76690445 TCACATATATACACTT
1 TCACATATATACACTT
76690461 TCACAT-TCATTAGGC-CTT
1 TCACATAT-A-TA--CACTT
76690479 ATCACATATATACACTT
1 -TCACATATATACACTT
76690496 TCACAT
1 TCACAT
76690502 TCATCACATC
Statistics
Matches: 34, Mismatches: 0, Indels: 14
0.71 0.00 0.29
Matches are distributed among these distances:
15 1 0.03
16 14 0.41
17 5 0.15
18 5 0.15
19 8 0.24
20 1 0.03
ACGTcount: A:0.33, C:0.26, G:0.04, T:0.37
Consensus pattern (16 bp):
TCACATATATACACTT
Found at i:76690481 original size:35 final size:35
Alignment explanation
Indices: 76690433--76690505 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
76690423 TCACATTGGC
*
76690433 CATTCGGCCTTATCACATATATACACTTTCACATT
1 CATTAGGCCTTATCACATATATACACTTTCACATT
76690468 CATTAGGCCTTATCACATATATACACTTTCACATT
1 CATTAGGCCTTATCACATATATACACTTTCACATT
76690503 CAT
1 CAT
76690506 CACATCGGCC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.30, C:0.27, G:0.05, T:0.37
Consensus pattern (35 bp):
CATTAGGCCTTATCACATATATACACTTTCACATT
Found at i:76690506 original size:82 final size:83
Alignment explanation
Indices: 76690384--76690548 Score: 278
Period size: 82 Copynumber: 2.0 Consensus size: 83
76690374 TCACATCGGC
* *
76690384 CATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 CATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
76690449 ATATATACACTTTCACATT
65 ATATATACACATTCACATT
76690468 CATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 CATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
*
76690532 TATATATACATTCACAT
66 TATATACACATTCACAT
76690549 CACAATTATC
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
82 61 0.79
84 16 0.21
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (83 bp):
CATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
TATATACACATTCACATT
Found at i:76693713 original size:39 final size:39
Alignment explanation
Indices: 76693667--76693790 Score: 176
Period size: 39 Copynumber: 3.2 Consensus size: 39
76693657 CGAAATCTAG
*
76693667 CTGAAGCACATAAGTGCTAAACGGAAGCCCGAAGGCTAA
1 CTGAAGCACATAAGTGCTAAACGGAAGCCCGGAGGCTAA
* *
76693706 CTAAAGCACATAAGTGCTAAACGGAAGCCCGGATGCTAA
1 CTGAAGCACATAAGTGCTAAACGGAAGCCCGGAGGCTAA
* * * * *
76693745 TTGAAGCACATAAGTACTAAACAGAAACCTGGAGGCTAA
1 CTGAAGCACATAAGTGCTAAACGGAAGCCCGGAGGCTAA
76693784 CTGAAGC
1 CTGAAGC
76693791 TCATCAGAGC
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 74 1.00
ACGTcount: A:0.40, C:0.22, G:0.23, T:0.15
Consensus pattern (39 bp):
CTGAAGCACATAAGTGCTAAACGGAAGCCCGGAGGCTAA
Found at i:76694443 original size:49 final size:49
Alignment explanation
Indices: 76694373--76694471 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
76694363 ATGATGGGCA
76694373 AAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 AAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76694422 AAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 AAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76694471 A
1 A
76694472 TGGGCAATAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.49, C:0.08, G:0.18, T:0.24
Consensus pattern (49 bp):
AAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:76695753 original size:39 final size:40
Alignment explanation
Indices: 76695653--76695837 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
76695643 TCGAATGATG
* * * *
76695653 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTTACTAAT
** * *
76695692 ATCCGAACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
*
76695733 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
* *
76695772 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
* *
76695811 AACCGGGCTATGACCCGAAGGCATTTG
1 -TCCGGGCTAAGACCCGAAGGCATTTG
76695838 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 36 0.30
40 77 0.63
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:76695789 original size:79 final size:81
Alignment explanation
Indices: 76695653--76695837 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
76695643 TCGAATGATG
* *
76695653 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGAACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGAACTAAGATCCGAAGGCATT
76695717 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * ***
76695732 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGAACTAAGAT-CCGAAGGCA
*
76695794 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
76695812 ACCGGGCTATGACCCGAAGGCATTTG
1 TCCGGGCTAAGACCCGAAGGCATTTG
76695838 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGAACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:76695859 original size:79 final size:79
Alignment explanation
Indices: 76695706--76695870 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
76695696 GAACTAAGAT
* **
76695706 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
76695771 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
76695785 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGACCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
76695848 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
76695864 CCGAAGG
1 CCGAAGG
76695871 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:76701731 original size:56 final size:56
Alignment explanation
Indices: 76701639--76701758 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
76701629 ACAAGGGATG
*
76701639 ATGGGAAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
76701695 GTGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76701751 ATGGGCAA
1 ATGGGCAA
76701759 TAAACTAATA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 61 1.00
ACGTcount: A:0.46, C:0.08, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:76703018 original size:40 final size:39
Alignment explanation
Indices: 76702934--76703118 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 39
76702924 TCGAATGATA
* * *
76702934 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
76702973 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
*
76703014 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
*
76703053 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
* *
76703092 AACCGGGCTATGACCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
76703119 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 36 0.29
40 79 0.64
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:76703070 original size:79 final size:81
Alignment explanation
Indices: 76702931--76703118 Score: 233
Period size: 79 Copynumber: 2.4 Consensus size: 81
76702921 TATTCGAATG
* *
76702931 ATATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGC
76702995 ATTTGTGCGAGATACT
66 ATTTGTGCGAGATACT
* * * **
76703011 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAG
1 ATA-TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAG
*
76703072 GCATTTGTGCGAGTTACT
64 GCATTTGTGCGAGATACT
* *
76703090 ATAACCGGGCTATGACCCGAAGGCATTTG
1 ATATCCGGGCTAAGACCCGAAGGCATTTG
76703119 AACGAGTAGC
Statistics
Matches: 94, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 1 0.01
79 59 0.63
80 34 0.36
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGC
ATTTGTGCGAGATACT
Found at i:76703140 original size:79 final size:79
Alignment explanation
Indices: 76702987--76703151 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
76702977 GGACTAAGAT
* **
76702987 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
76703052 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
76703066 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGACCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
76703129 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
76703145 CCGAAGG
1 CCGAAGG
76703152 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:76707341 original size:29 final size:31
Alignment explanation
Indices: 76707275--76707351 Score: 127
Period size: 31 Copynumber: 2.5 Consensus size: 31
76707265 GTGTCCCAAG
*
76707275 CCACACGGGTGTGTGTGACCACACGGCCTAC
1 CCACACGGGTGTGTGTGACCACACAGCCTAC
76707306 CCACACGGGTGTGTGTGACCACACAGCCTAC
1 CCACACGGGTGTGTGTGACCACACAGCCTAC
* *
76707337 CCACGCGGGCGTGTG
1 CCACACGGGTGTGTG
76707352 ACTCACCAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.16
Consensus pattern (31 bp):
CCACACGGGTGTGTGTGACCACACAGCCTAC
Found at i:76708807 original size:46 final size:46
Alignment explanation
Indices: 76708739--76708913 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
76708729 TGTAACCCGC
*
76708739 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* * *
76708785 CCATAAGTGAACTCGGAATCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* ** *
76708835 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGCACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
76708878 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
76708914 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 60 0.57
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:76708859 original size:93 final size:93
Alignment explanation
Indices: 76708746--76708917 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
76708736 CGCCCATAAG
** *
76708746 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGAATCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGCACATTCGCATCCATAAGTGAACTCGGAATCAACTCA
76708811 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
76708839 CGAACTCGGACTCAACTCAACGAGTTCGCACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGCACATTCGCATCCATAAGTGAACTCGGAATCAACTCA
76708904 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
76708918 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGCACATTCGCATCCATAAGTGAACTCGGAATCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:76720336 original size:49 final size:47
Alignment explanation
Indices: 76720245--76720354 Score: 114
Period size: 49 Copynumber: 2.3 Consensus size: 47
76720235 CTTGAGGTGT
* * * * *
76720245 GTCAGTGTAAGCCCTGTCTAGGACATGGCATCGGCCTCGATGTATGAAA
1 GTCAGTGTAAGACCTATCTAGCACATGGCATCGACCTAGATGTA--AAA
* *
76720294 GTCAGTGTAAGACCTATCTTA-CACATGGCATCGACTTAGATGTAAGA
1 GTCAGTGTAAGACCTATC-TAGCACATGGCATCGACCTAGATGTAAAA
*
76720341 GCCAGTGTAAGACC
1 GTCAGTGTAAGACC
76720355 ATGTTTACGA
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
47 15 0.29
49 35 0.67
50 2 0.04
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (47 bp):
GTCAGTGTAAGACCTATCTAGCACATGGCATCGACCTAGATGTAAAA
Found at i:76731452 original size:48 final size:48
Alignment explanation
Indices: 76731381--76731622 Score: 421
Period size: 48 Copynumber: 5.0 Consensus size: 48
76731371 AGATAAATAT
* *
76731381 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
76731429 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
76731477 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
76731525 ATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
76731573 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
76731621 AT
1 AT
76731623 GTGTGTATAT
Statistics
Matches: 183, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 183 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:76731862 original size:37 final size:37
Alignment explanation
Indices: 76731763--76731865 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
76731753 GGAAATATAT
*
76731763 TCCGGGTAAGACCCGATGACTACGTATGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
76731800 TCCGGGTAAGACCCAATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
76731837 TCTGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
76731866 GGACTATTCG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:76733191 original size:48 final size:48
Alignment explanation
Indices: 76733131--76733236 Score: 167
Period size: 48 Copynumber: 2.2 Consensus size: 48
76733121 CGGCCACAAT
* *
76733131 ATATACACATCTCATACATATTTCACATTAGCCATTCGACTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGACTTTACCAC
*
76733179 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGACTTTACCAC
* *
76733227 ACATATATAT
1 ATATACATAT
76733237 ATTTATCTTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.34, C:0.27, G:0.05, T:0.34
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACACTAGCCATTCGACTTTACCAC
Found at i:76736808 original size:47 final size:47
Alignment explanation
Indices: 76736757--76737299 Score: 906
Period size: 47 Copynumber: 11.5 Consensus size: 47
76736747 TTATTCATTG
* **
76736757 GAAAGTGTATATATGTGATAAGGCCGAATGGCTAATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
76736804 GAAAGTGTATATATGTGATAAGGCCAAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
76736851 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
76736900 GAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
76736947 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
76736996 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
76737043 GAAAGTGTATATATGTGATAAGACCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
76737090 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
76737137 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* **
76737184 GAAAGTGTATATATGTGATAAGGCCGAATGGCTAATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * *
76737231 GAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
76737278 GAAAGTGTATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
76737300 TCCCGAAGGG
Statistics
Matches: 474, Mismatches: 18, Indels: 8
0.95 0.04 0.02
Matches are distributed among these distances:
47 382 0.81
49 92 0.19
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:76741850 original size:45 final size:45
Alignment explanation
Indices: 76741793--76741883 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
76741783 GAACTATATG
* ** *
76741793 ATCTGAATTCATTGAGTTGTGG-CTTGAGTTCATGATATATGTAGC
1 ATCTGAACTCATTGAGTAATGGTC-TAAGTTCATGATATATGTAGC
*
76741838 ATCTGAACTCATTGAGTAATGGTCTAAGTTCATGATGTATGTAGC
1 ATCTGAACTCATTGAGTAATGGTCTAAGTTCATGATATATGTAGC
76741883 A
1 A
76741884 CATGTTTTGG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
45 39 0.98
46 1 0.03
ACGTcount: A:0.27, C:0.12, G:0.23, T:0.37
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTAATGGTCTAAGTTCATGATATATGTAGC
Found at i:76751956 original size:43 final size:43
Alignment explanation
Indices: 76751903--76751986 Score: 105
Period size: 43 Copynumber: 2.0 Consensus size: 43
76751893 AAGATATGTG
* * * * *
76751903 GCATCCGAGCTAGTTGGGATGTCCGAGTTCATTATGGATGCAA
1 GCATCCGAGCTAGTCGAGAGGTCCGAGTTAATAATGGATGCAA
* *
76751946 GCATTCGAGCTCGTCGAGAGGTCCGAGTTAATAATGGATGC
1 GCATCCGAGCTAGTCGAGAGGTCCGAGTTAATAATGGATGC
76751987 GATTTATGTA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (43 bp):
GCATCCGAGCTAGTCGAGAGGTCCGAGTTAATAATGGATGCAA
Found at i:76755488 original size:51 final size:51
Alignment explanation
Indices: 76755366--76755488 Score: 128
Period size: 51 Copynumber: 2.4 Consensus size: 51
76755356 GAAAACATGT
* * *
76755366 GTGGTACTAAGTGT-AGACCACTATGTGTAAAAGATAGCTTTGGTCACAAGT
1 GTGGTACTATGTGTAAG-CCACTATGTGTAAAAGATAGCTTTGCTCACAAGG
* * *
76755417 GTGGTACAATGTG-AAGGCCACTTTGTG-AATAAGGTAGCTTTGACT-ACAAGG
1 GTGGTACTATGTGTAA-GCCACTATGTGTAA-AAGATAGCTTTG-CTCACAAGG
76755468 GTGGTACTATGTGTAAGCCAC
1 GTGGTACTATGTGTAAGCCAC
76755489 CGGGCATTCA
Statistics
Matches: 60, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
50 2 0.03
51 54 0.90
52 4 0.07
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (51 bp):
GTGGTACTATGTGTAAGCCACTATGTGTAAAAGATAGCTTTGCTCACAAGG
Found at i:76758730 original size:45 final size:45
Alignment explanation
Indices: 76758663--76758878 Score: 269
Period size: 45 Copynumber: 4.9 Consensus size: 45
76758653 CCATAGTATT
*
76758663 TCGATATATGTGATTTCATGTAAGACCATGTCTGGGACATTGGCA
1 TCGATATATGTGATTTCGTGTAAGACCATGTCTGGGACATTGGCA
* * * * *
76758708 TCTATATATGTGATTTTGTGTAAGACCACGTCTGGGACGTTAGCA
1 TCGATATATGTGATTTCGTGTAAGACCATGTCTGGGACATTGGCA
* *
76758753 TCGATATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATATGTGATTTCGTGTAAGACCATGTCTGGGACATTGGCA
* * * *
76758798 TCGATATATGTGGTTACGTGTAAGACCATGTCTGGAACATTGACA
1 TCGATATATGTGATTTCGTGTAAGACCATGTCTGGGACATTGGCA
* * *
76758843 TTG-TAT-T-CGA-TTCATGTAAGACCATGTCTGGGACAT
1 TCGATATATGTGATTTCGTGTAAGACCATGTCTGGGACAT
76758879 CGACTTCGTA
Statistics
Matches: 150, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
41 23 0.15
42 1 0.01
43 1 0.01
44 3 0.02
45 122 0.81
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (45 bp):
TCGATATATGTGATTTCGTGTAAGACCATGTCTGGGACATTGGCA
Found at i:76758819 original size:90 final size:90
Alignment explanation
Indices: 76758663--76758968 Score: 271
Period size: 90 Copynumber: 3.5 Consensus size: 90
76758653 CCATAGTATT
* * **
76758663 TCGATATATGTGATTTCATGTAAGACCATGTCTGGGACATTGGCATCTATATATGTGATTTTGTG
1 TCGATATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCATCGATATATGTGATTACGTG
76758728 TAAGACCACGTCTGGGACGTTAGCA
66 TAAGACCACGTCTGGGACGTTAGCA
* * *
76758753 TCGATATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGGTTACGTG
1 TCGATATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCATCGATATATGTGATTACGTG
* * *
76758818 TAAGACCATGTCTGGAACATT-GACA
66 TAAGACCACGTCTGGGACGTTAG-CA
* * * * * * *
76758843 TTG-TAT-T-CGA-TTCATGTAAGACCATGTCTGGGACATCGACTTCG-TAT-T-CGATT-CGTG
1 TCGATATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCATCGATATATGTGATTACGTG
*
76758900 TAAGACC-CAG-CTTGGGACAG-TGGCA
66 TAAGACCAC-GTC-TGGGAC-GTTAGCA
* * ** *
76758925 TCG--ACATGAGATAGCATGTAAGACCACGTCTGGGACGTTGGCAT
1 TCGATATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCAT
76758969 TGTTCGATAA
Statistics
Matches: 175, Mismatches: 33, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
81 2 0.01
82 23 0.13
83 6 0.03
84 26 0.15
85 3 0.02
86 28 0.16
87 2 0.01
88 1 0.01
89 4 0.02
90 80 0.46
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (90 bp):
TCGATATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCATCGATATATGTGATTACGTG
TAAGACCACGTCTGGGACGTTAGCA
Found at i:76758870 original size:41 final size:41
Alignment explanation
Indices: 76758816--76758906 Score: 139
Period size: 41 Copynumber: 2.2 Consensus size: 41
76758806 TGTGGTTACG
*
76758816 TGTAAGACCATGTCTGGAACATTGACATT-GTATTCGATTCA
1 TGTAAGACCATGTCTGGAACATCGAC-TTCGTATTCGATTCA
* *
76758857 TGTAAGACCATGTCTGGGACATCGACTTCGTATTCGATTCG
1 TGTAAGACCATGTCTGGAACATCGACTTCGTATTCGATTCA
76758898 TGTAAGACC
1 TGTAAGACC
76758907 CAGCTTGGGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 2 0.04
41 44 0.96
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (41 bp):
TGTAAGACCATGTCTGGAACATCGACTTCGTATTCGATTCA
Found at i:76766574 original size:45 final size:45
Alignment explanation
Indices: 76766510--76766608 Score: 171
Period size: 45 Copynumber: 2.2 Consensus size: 45
76766500 TAGGATTTCA
*
76766510 ATATAGGTGATTTCGTGTAAGACCACGTCTGAGATGTTGGCATCG
1 ATATATGTGATTTCGTGTAAGACCACGTCTGAGATGTTGGCATCG
* *
76766555 ATATATGTGATTTCGTGTAAGACCACTTCTGGGATGTTGGCATCG
1 ATATATGTGATTTCGTGTAAGACCACGTCTGAGATGTTGGCATCG
76766600 ATATATGTG
1 ATATATGTG
76766609 GTTACGTAAG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.24, C:0.14, G:0.27, T:0.34
Consensus pattern (45 bp):
ATATATGTGATTTCGTGTAAGACCACGTCTGAGATGTTGGCATCG
Found at i:76766665 original size:41 final size:41
Alignment explanation
Indices: 76766614--76766724 Score: 152
Period size: 41 Copynumber: 2.7 Consensus size: 41
76766604 ATGTGGTTAC
* *
76766614 GTAAGACCATGTTTGGGACATCGGCATCATATTTGATTTGT
1 GTAAGACCATGTTTGGGACATCGGCATCATATTCGATTCGT
* * *
76766655 GTAAGACCATGTCTGGGACATCGACATCGTATTCGATTCGT
1 GTAAGACCATGTTTGGGACATCGGCATCATATTCGATTCGT
*
76766696 GTAAGACCCTGTTTGGGACAGT-GGCATCA
1 GTAAGACCATGTTTGGGACA-TCGGCATCA
76766725 GTATGAGATA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
41 59 0.98
42 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (41 bp):
GTAAGACCATGTTTGGGACATCGGCATCATATTCGATTCGT
Found at i:76779884 original size:4 final size:4
Alignment explanation
Indices: 76779875--76779921 Score: 94
Period size: 4 Copynumber: 11.8 Consensus size: 4
76779865 GGAGTTGCAA
76779875 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
76779922 ATTTGTGTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 43 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:76791209 original size:30 final size:30
Alignment explanation
Indices: 76791175--76791235 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
76791165 TCCTTAACTC
*
76791175 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTCTGAAAAATTACAATTTTGCCCCT
* * * *
76791205 AAACTTCTGCATATTTACACTTTTGCCCCT
1 AAACTTCTGAAAAATTACAATTTTGCCCCT
76791235 A
1 A
76791236 GGCTTGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTCTGAAAAATTACAATTTTGCCCCT
Found at i:76795905 original size:15 final size:14
Alignment explanation
Indices: 76795885--76795948 Score: 60
Period size: 15 Copynumber: 4.4 Consensus size: 14
76795875 ACCCCCTTCC
76795885 CTTTCTTTTCTCTT
1 CTTTCTTTTCTCTT
76795899 ACTTTCTTTT-TCTTT
1 -CTTTCTTTTCTC-TT
*
76795914 CTTTCTCGCTTCT-TT
1 CTTTCT--TTTCTCTT
76795929 CTTTCTTTTCTCCTT
1 CTTTCTTTTCT-CTT
76795944 CTTTC
1 CTTTC
76795949 CCTTTCTTCT
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
13 4 0.10
14 8 0.20
15 26 0.63
16 2 0.05
17 1 0.02
ACGTcount: A:0.02, C:0.30, G:0.02, T:0.67
Consensus pattern (14 bp):
CTTTCTTTTCTCTT
Found at i:76795928 original size:25 final size:25
Alignment explanation
Indices: 76795885--76795932 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
76795875 ACCCCCTTCC
*
76795885 CTTTCTTTTCTCTTACTTTCTTTTT
1 CTTTCTTTTCGCTTACTTTCTTTTT
76795910 CTTTCTTTCTCGCTT-CTTTCTTT
1 CTTTCTTT-TCGCTTACTTTCTTT
76795933 CTTTTCTCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.02, C:0.27, G:0.02, T:0.69
Consensus pattern (25 bp):
CTTTCTTTTCGCTTACTTTCTTTTT
Found at i:76795958 original size:19 final size:19
Alignment explanation
Indices: 76795907--76795948 Score: 68
Period size: 19 Copynumber: 2.2 Consensus size: 19
76795897 TTACTTTCTT
76795907 TTTCTTTCTTTCTCGCTTC
1 TTTCTTTCTTTCTCGCTTC
76795926 TTTCTTTCTTTTCTC-CTTC
1 TTTCTTTC-TTTCTCGCTTC
76795945 TTTC
1 TTTC
76795949 CCTTTCTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.00, C:0.31, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTCTTTCTTTCTCGCTTC
Found at i:76797732 original size:6 final size:6
Alignment explanation
Indices: 76797721--76797765 Score: 72
Period size: 6 Copynumber: 7.5 Consensus size: 6
76797711 AGTCCATCTA
* *
76797721 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT CTTTAT TTTCAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT
76797766 ATCTTTCTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTAT
Found at i:76797744 original size:18 final size:18
Alignment explanation
Indices: 76797721--76797780 Score: 79
Period size: 18 Copynumber: 3.4 Consensus size: 18
76797711 AGTCCATCTA
*
76797721 TTTTATTTTTATTTTTAT
1 TTTTATTTTTATCTTTAT
76797739 TTTTATTTTTATCTTTAT
1 TTTTATTTTTATCTTTAT
* *
76797757 TTTCA-TTTTATCTTT-C
1 TTTTATTTTTATCTTTAT
76797773 TTTTATTT
1 TTTTATTT
76797781 ATTTTTGAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
16 4 0.11
17 12 0.32
18 21 0.57
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTATTTTTATCTTTAT
Found at i:76797772 original size:12 final size:11
Alignment explanation
Indices: 76797727--76797780 Score: 56
Period size: 12 Copynumber: 4.7 Consensus size: 11
76797717 TCTATTTTAT
*
76797727 TTTTATTTTTA
1 TTTTATTTTCA
*
76797738 TTTTTATTTTTA
1 -TTTTATTTTCA
76797750 TCTTTATTTTCA
1 T-TTTATTTTCA
76797762 TTTTATCTTTC-
1 TTTTAT-TTTCA
76797773 TTTTATTT
1 TTTTATTT
76797781 ATTTTTGAAG
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
10 2 0.05
11 12 0.31
12 25 0.64
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTTATTTTCA
Found at i:76805541 original size:20 final size:20
Alignment explanation
Indices: 76805516--76805565 Score: 100
Period size: 20 Copynumber: 2.5 Consensus size: 20
76805506 CACATCTTTC
76805516 TGTAGCAATCGAGTCATCGA
1 TGTAGCAATCGAGTCATCGA
76805536 TGTAGCAATCGAGTCATCGA
1 TGTAGCAATCGAGTCATCGA
76805556 TGTAGCAATC
1 TGTAGCAATC
76805566 ATCAAGAACC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (20 bp):
TGTAGCAATCGAGTCATCGA
Found at i:76806719 original size:59 final size:59
Alignment explanation
Indices: 76806627--76806748 Score: 235
Period size: 59 Copynumber: 2.1 Consensus size: 59
76806617 AATTACACAA
76806627 ACTAAAGACAAACATTTAGGAATATACAAAGAAAATCTGTTCCATTCTATAGCTATTCG
1 ACTAAAGACAAACATTTAGGAATATACAAAGAAAATCTGTTCCATTCTATAGCTATTCG
*
76806686 ACTAAAGTCAAACATTTAGGAATATACAAAGAAAATCTGTTCCATTCTATAGCTATTCG
1 ACTAAAGACAAACATTTAGGAATATACAAAGAAAATCTGTTCCATTCTATAGCTATTCG
76806745 ACTA
1 ACTA
76806749 TCACAAGCTA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 62 1.00
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.30
Consensus pattern (59 bp):
ACTAAAGACAAACATTTAGGAATATACAAAGAAAATCTGTTCCATTCTATAGCTATTCG
Found at i:76808457 original size:58 final size:58
Alignment explanation
Indices: 76808384--76808500 Score: 225
Period size: 58 Copynumber: 2.0 Consensus size: 58
76808374 GCCATTGTCC
*
76808384 CAGACAGGGTTTTACTCATAAACACATATCGAAATCACAAATTGATGCCATGGACTTA
1 CAGACAGGGTCTTACTCATAAACACATATCGAAATCACAAATTGATGCCATGGACTTA
76808442 CAGACAGGGTCTTACTCATAAACACATATCGAAATCACAAATTGATGCCATGGACTTA
1 CAGACAGGGTCTTACTCATAAACACATATCGAAATCACAAATTGATGCCATGGACTTA
76808500 C
1 C
76808501 TCGCACTCAT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.38, C:0.22, G:0.15, T:0.25
Consensus pattern (58 bp):
CAGACAGGGTCTTACTCATAAACACATATCGAAATCACAAATTGATGCCATGGACTTA
Found at i:76826137 original size:13 final size:13
Alignment explanation
Indices: 76826119--76826145 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
76826109 GATTCTTTTT
76826119 TTTTGTTATTATA
1 TTTTGTTATTATA
76826132 TTTTGTTATTATA
1 TTTTGTTATTATA
76826145 T
1 T
76826146 GAGATGTAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.70
Consensus pattern (13 bp):
TTTTGTTATTATA
Found at i:76826530 original size:50 final size:50
Alignment explanation
Indices: 76826291--76826521 Score: 259
Period size: 50 Copynumber: 4.6 Consensus size: 50
76826281 ATTGTGAGAA
* *
76826291 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
** * * * *
76826341 TTCATGTGTAGTACTAACTGCAGGCTACTATGCGTACTC-GATAGGTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGAT-GGTT-AGGT
* * *
76826392 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGTT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
* * * * *
76826442 CACGTGTGTAGTACAAAGTGCAGGCTACTACATGTACCAAATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
* *
76826492 CGCATGTGTAGTACTAAGTGTAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
76826522 TACGTACCAG
Statistics
Matches: 150, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
49 1 0.01
50 111 0.74
51 37 0.25
52 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
Found at i:76835957 original size:21 final size:21
Alignment explanation
Indices: 76835931--76835973 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
76835921 AACCTAGAGT
76835931 TTCTCAGTACTCAAATCTTAC
1 TTCTCAGTACTCAAATCTTAC
76835952 TTCTCAGTACTCAAATCTTAC
1 TTCTCAGTACTCAAATCTTAC
76835973 T
1 T
76835974 CTGAAATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.05, T:0.40
Consensus pattern (21 bp):
TTCTCAGTACTCAAATCTTAC
Found at i:76836138 original size:29 final size:29
Alignment explanation
Indices: 76836082--76836139 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
76836072 CACATTTCTA
* *
76836082 TACTCTGGTCATCAACTGTTTAGAAACTT
1 TACTCTGGTCATCAACTATTTACAAACTT
*
76836111 TACTCTGGTCATCAACTATTTACCAACTT
1 TACTCTGGTCATCAACTATTTACAAACTT
76836140 CATAGATGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.38
Consensus pattern (29 bp):
TACTCTGGTCATCAACTATTTACAAACTT
Found at i:76836442 original size:45 final size:43
Alignment explanation
Indices: 76836404--76836486 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
76836394 CGTTTATTTA
* ** *
76836404 AAAAAAACGCCGCTAAAAGTTATGGCTTTTAGCGGCGTTTGTT
1 AAAAAAACACCGCTAAAAGCCATGCCTTTTAGCGGCGTTTGTT
* * *
76836447 GAAAAAGCACCGCTAAAAGCCATGCCTTTTAGTGGCGTTT
1 AAAAAAACACCGCTAAAAGCCATGCCTTTTAGCGGCGTTT
76836487 TTCCCACAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (43 bp):
AAAAAAACACCGCTAAAAGCCATGCCTTTTAGCGGCGTTTGTT
Found at i:76836636 original size:32 final size:31
Alignment explanation
Indices: 76836566--76836640 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
76836556 CATTAAATTC
* * *
76836566 CAACCAAATACAACAAATATAGTATAAAATG
1 CAACCAAAAACAACAAATATAGCATAAAATA
* * *
76836597 CAGCCAAAAACAGCAAATTTAGCATAAAAATA
1 CAACCAAAAACAACAAATATAGCAT-AAAATA
76836629 CAACCAAAAACA
1 CAACCAAAAACA
76836641 TTAATTCTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
31 20 0.56
32 16 0.44
ACGTcount: A:0.59, C:0.20, G:0.07, T:0.15
Consensus pattern (31 bp):
CAACCAAAAACAACAAATATAGCATAAAATA
Found at i:76836908 original size:21 final size:21
Alignment explanation
Indices: 76836860--76836952 Score: 82
Period size: 21 Copynumber: 4.4 Consensus size: 21
76836850 TTTTGCTCTG
76836860 CTCTG-CTGCCCTCGCTACTGC
1 CTCTGCCT-CCCTCGCTACTGC
76836881 CTCTGCCTCCCTCGCT-CGTGC
1 CTCTGCCTCCCTCGCTAC-TGC
* * * *
76836902 CTCTGCCTCCTTCACTGCTGT
1 CTCTGCCTCCCTCGCTACTGC
* * *
76836923 CGCTACCTCCCTCGCTGCTGC
1 CTCTGCCTCCCTCGCTACTGC
*
76836944 CGCTGCCTC
1 CTCTGCCTC
76836953 TGTCTCTGCT
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
20 1 0.02
21 56 0.93
22 3 0.05
ACGTcount: A:0.03, C:0.49, G:0.18, T:0.29
Consensus pattern (21 bp):
CTCTGCCTCCCTCGCTACTGC
Found at i:76841657 original size:37 final size:37
Alignment explanation
Indices: 76841607--76841685 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
76841597 TTATTACGAA
* * *
76841607 GTCTTACCCGGACATAATCTCCACACAAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACAAAGTCATCGG
**
76841644 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACAAAGTCATCGG
76841681 GTCTT
1 GTCTT
76841686 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACAAAGTCATCGG
Found at i:76841882 original size:47 final size:47
Alignment explanation
Indices: 76841804--76842120 Score: 492
Period size: 47 Copynumber: 6.7 Consensus size: 47
76841794 CCCTTCGGGA
* * * * * *
76841804 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
76841851 CCTGTCACATATATACACTTTCACATTCATCACATCTGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76841898 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76841945 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76841992 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76842039 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
76842086 CTTAGCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
76842121 AGAATCCTAA
Statistics
Matches: 252, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
46 1 0.00
47 251 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:76846134 original size:9 final size:9
Alignment explanation
Indices: 76846120--76846413 Score: 87
Period size: 9 Copynumber: 33.0 Consensus size: 9
76846110 TAAGTATAAC
76846120 TAAGTTATG
1 TAAGTTATG
76846129 TAAGTTATG
1 TAAGTTATG
* * *
76846138 ATATGATATA
1 -TAAGTTATG
*
76846148 T-ATTTATG
1 TAAGTTATG
76846156 T-A-TTATG
1 TAAGTTATG
*
76846163 TAAGATATG
1 TAAGTTATG
*
76846172 TAAATTATG
1 TAAGTTATG
76846181 TAAGTTATCG
1 TAAGTTAT-G
*
76846191 GAA-TTATG
1 TAAGTTATG
*
76846199 TAAATTATG
1 TAAGTTATG
* *
76846208 TACGATATG
1 TAAGTTATG
*
76846217 ATATATATCTATG
1 -TA-A-GT-TATG
76846230 T-A-TTATG
1 TAAGTTATG
76846237 TAAGTTATG
1 TAAGTTATG
*
76846246 TAAATTATG
1 TAAGTTATG
* * *
76846255 CAAATTGT-
1 TAAGTTATG
**
76846263 TCATCTTATG
1 T-AAGTTATG
*
76846273 TAAATTATG
1 TAAGTTATG
*
76846282 TAAGATATGATA
1 TAAG-T-T-ATG
* *
76846294 TATACTTCTG
1 TA-AGTTATG
76846304 T-A-TTATG
1 TAAGTTATG
76846311 TAAGTTATG
1 TAAGTTATG
*
76846320 TAAATTATG
1 TAAGTTATG
* *
76846329 TAAGTTGTT
1 TAAGTTATG
**
76846338 TATCTTATG
1 TAAGTTATG
*
76846347 TAAATTATG
1 TAAGTTATG
*
76846356 TAAGATATG
1 TAAGTTATG
76846365 --A-TATAT-
1 TAAGT-TATG
* *
76846371 AAATTTATG
1 TAAGTTATG
76846380 T-A-TTATG
1 TAAGTTATG
76846387 TAAGTTATG
1 TAAGTTATG
*
76846396 TAAATTATG
1 TAAGTTATG
*
76846405 TAAGATATG
1 TAAGTTATG
76846414 ATATATATTT
Statistics
Matches: 208, Mismatches: 51, Indels: 52
0.67 0.16 0.17
Matches are distributed among these distances:
7 26 0.12
8 19 0.09
9 134 0.64
10 16 0.08
11 2 0.01
12 6 0.03
13 5 0.02
ACGTcount: A:0.37, C:0.03, G:0.15, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:76846246 original size:74 final size:73
Alignment explanation
Indices: 76846137--76846408 Score: 368
Period size: 74 Copynumber: 3.7 Consensus size: 73
76846127 TGTAAGTTAT
* * *
76846137 GATATGATATATATTTATGTATTATGTAAGATATGTAAATTATGTAAGTTATCGGA-ATTATGTA
1 GATATGATATATATCTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATC--ATCTTATGTA
*
76846201 AATTATGTAC
64 AATTATGTAA
* * *
76846211 GATATGATATATATCTATGTATTATGTAAGTTATGTAAATTATGCAAATTGTTCATCTTATGTAA
1 GATATGATATATATCTATGTATTATGTAAGTTATGTAAATTATGTAAGTT-ATCATCTTATGTAA
76846276 ATTATGTAA
65 ATTATGTAA
* * *
76846285 GATATGATATATA-CTTCTGTATTATGTAAGTTATGTAAATTATGTAAGTTGTTTATCTTATGTA
1 GATATGATATATATC-TATGTATTATGTAAGTTATGTAAATTATGTAAGTT-ATCATCTTATGTA
76846349 AATTATGTAA
64 AATTATGTAA
*
76846359 GATATGATATATAAATTTATGTATTATGTAAGTTATGTAAATTATGTAAG
1 GATATGATATAT--ATCTATGTATTATGTAAGTTATGTAAATTATGTAAG
76846409 ATATGATATA
Statistics
Matches: 179, Mismatches: 13, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
73 2 0.01
74 142 0.79
75 2 0.01
76 33 0.18
ACGTcount: A:0.37, C:0.03, G:0.15, T:0.45
Consensus pattern (73 bp):
GATATGATATATATCTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATCATCTTATGTAAA
TTATGTAA
Found at i:76846254 original size:18 final size:18
Alignment explanation
Indices: 76846120--76846413 Score: 105
Period size: 18 Copynumber: 16.5 Consensus size: 18
76846110 TAAGTATAAC
*
76846120 TAAGTTATGTAAGTTATG
1 TAAGTTATGTAAATTATG
* * * *
76846138 ATATGATATAT-ATTTATG
1 -TAAGTTATGTAAATTATG
76846156 T-A-TTATGTAAGA-TATG
1 TAAGTTATGTAA-ATTATG
* *
76846172 TAAATTATGTAAGTTATCG
1 TAAGTTATGTAAATTAT-G
*
76846191 GAA-TTATGTAAATTATG
1 TAAGTTATGTAAATTATG
* *
76846208 TACGATATGATATATATCTATG
1 TAAGTTATG-TA-A-AT-TATG
*
76846230 T-A-TTATGTAAGTTATG
1 TAAGTTATGTAAATTATG
* * *
76846246 TAAATTATGCAAATTGT-
1 TAAGTTATGTAAATTATG
**
76846263 TCATCTTATGTAAATTATG
1 T-AAGTTATGTAAATTATG
* *
76846282 TAAGATATGATATATACTTCTG
1 TAAGTTATG-TA-A-A-TTATG
*
76846304 T-A-TTATGTAAGTTATG
1 TAAGTTATGTAAATTATG
* * * *
76846320 TAAATTATGTAAGTTGTT
1 TAAGTTATGTAAATTATG
**
76846338 TATCTTATGTAAATTATG
1 TAAGTTATGTAAATTATG
* *
76846356 TAAGATATG-ATA-TAT-
1 TAAGTTATGTAAATTATG
* *
76846371 AAATTTATGT--ATTATG
1 TAAGTTATGTAAATTATG
76846387 TAAGTTATGTAAATTATG
1 TAAGTTATGTAAATTATG
*
76846405 TAAGATATG
1 TAAGTTATG
76846414 ATATATATTT
Statistics
Matches: 201, Mismatches: 48, Indels: 53
0.67 0.16 0.18
Matches are distributed among these distances:
14 1 0.00
15 13 0.06
16 27 0.13
17 10 0.05
18 107 0.53
19 19 0.09
20 10 0.05
21 4 0.02
22 10 0.05
ACGTcount: A:0.37, C:0.03, G:0.15, T:0.45
Consensus pattern (18 bp):
TAAGTTATGTAAATTATG
Found at i:76846812 original size:106 final size:106
Alignment explanation
Indices: 76846685--76847454 Score: 1218
Period size: 106 Copynumber: 7.3 Consensus size: 106
76846675 TAAAAAAAAT
*
76846685 AATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAA
1 AATTTAATTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAA
76846750 ATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATAC
66 ATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATAC
* *
76846791 AATTTAATTTAATTAGGTAATTTAAAAA-TAAAATAAAAGTAGAC--AATATTTTTCGAGATTAA
1 AATTTAATTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAA
* * * *
76846853 AATAAAATAAAATAACATATTCAAAATAAAACTTTAAATAC
66 ATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATAC
* **
76846894 AATTTAGTTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGACAAAACGTTTTTAGTGATTAA
1 AATTTAATTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAA
76846959 ATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATAC
66 ATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATAC
* * *
76847000 AATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGATAAAATATTTATAGTGATTAA
1 AATTTAATTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAA
76847065 ATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATAC
66 ATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATAC
* *
76847106 AATTTAATTTAATTAGGTAATTTAAAAATT-AAATAAAAGTAGAC--AATATTTTTTGTGATAAA
1 AATTTAATTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAA
* *
76847168 AATAAAATAAAATAAAATATTTAAAATAAAACTTTAAATAC
66 ATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATAC
*
76847209 AATTTAATTTAATT-GGATAATTTAAAAATTAAAATAAAAGTAGACAAAACATTTTTAGTGATTA
1 AATTTAATTTAATTAGG-TAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTA
*
76847273 AATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATAT
65 AATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATAC
* *
76847315 AATTTAATTTAATTAGGTAGTTTAAAAA-TAAAATAAAAGTAGACAAAATATTTTTCGTGATTAA
1 AATTTAATTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAA
* * * *
76847379 GA-TAAAATAAAATAACATATTCAAAATAAAACTTTAAATAT
66 -ATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATAC
*
76847420 AATTTAGTTTAATTAGGTAATTTAAAAA-TAAAATA
1 AATTTAATTTAATTAGGTAATTTAAAAATTAAAATA
76847455 GAATATTTAA
Statistics
Matches: 612, Mismatches: 43, Indels: 19
0.91 0.06 0.03
Matches are distributed among these distances:
102 2 0.00
103 161 0.26
104 30 0.05
105 132 0.22
106 285 0.47
107 2 0.00
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (106 bp):
AATTTAATTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAA
ATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATAC
Found at i:76847183 original size:209 final size:209
Alignment explanation
Indices: 76846685--76847454 Score: 1181
Period size: 209 Copynumber: 3.7 Consensus size: 209
76846675 TAAAAAAAAT
*
76846685 AATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAA
1 AATTTAATTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGAC-AAATATTTTTAGTGATTAA
* * *
76846750 ATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTA
65 AATAAAATAAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGATAATTTA
* * * * * * *
76846815 AAAATAAAATAAAAGTAG-ACAATATTTTTCGAGATTAAAATAAAATAAAATAACATATTCAAAA
130 AAAATAAAATAAAAGTAGAAAAATATTTTTAGTGATTAAATTAAAATCAAATAAAATATTTAAAA
76846879 TAAAACTTTAAATAC
195 TAAAACTTTAAATAC
*
76846894 AATTTAGTTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGACAAA-ACGTTTTTAGTGATTA
1 AATTTAATTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGACAAATA--TTTTTAGTGATTA
* *
76846958 AATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGATAATTT
64 AAATAAAATAAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGATAATTT
*
76847023 AAAAATTAAAATAAAAGTAGATAAAATATTTATAGTGATTAAATTAAAATCAAATAAAATATTTA
129 AAAAA-TAAAATAAAAGTAGA-AAAATATTTTTAGTGATTAAATTAAAATCAAATAAAATATTTA
76847088 AAATAAAACTTTAAATAC
192 AAATAAAACTTTAAATAC
* *
76847106 AATTTAATTTAATTAGGTAATTTAAAAATT-AAATAAAAGTAGAC-AATATTTTTTGTGATAAAA
1 AATTTAATTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGACAAATATTTTTAGTGATTAAA
*
76847169 ATAAAATAAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTGGATAATTTAA
66 ATAAAATAAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGATAATTTAA
*
76847234 AAATTAAAATAAAAGTAGACAAAACATTTTTAGTGATTAAATTAAAATCAAATAAAATATTTAAA
131 AAA-TAAAATAAAAGTAGA-AAAATATTTTTAGTGATTAAATTAAAATCAAATAAAATATTTAAA
*
76847299 ATAAAACTTTAAATAT
194 ATAAAACTTTAAATAC
* *
76847315 AATTTAATTTAATTAGGTAGTTTAAAAA-TAAAATAAAAGTAGACAAAATATTTTTCGTGATTAA
1 AATTTAATTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGAC-AAATATTTTTAGTGATTAA
* * * * * *
76847379 GATAAAATAAAATAACATATTCAAAATAAAACTTTAAATATAATTTAGTTTAATTAGGTAATTTA
65 AATAAAATAAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGATAATTTA
76847444 AAAATAAAATA
130 AAAATAAAATA
76847455 GAATATTTAA
Statistics
Matches: 521, Mismatches: 31, Indels: 17
0.92 0.05 0.03
Matches are distributed among these distances:
207 1 0.00
208 4 0.01
209 318 0.61
210 23 0.04
211 93 0.18
212 82 0.16
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (209 bp):
AATTTAATTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGACAAATATTTTTAGTGATTAAA
ATAAAATAAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGATAATTTAA
AAATAAAATAAAAGTAGAAAAATATTTTTAGTGATTAAATTAAAATCAAATAAAATATTTAAAAT
AAAACTTTAAATAC
Found at i:76847257 original size:315 final size:315
Alignment explanation
Indices: 76846685--76847454 Score: 1330
Period size: 315 Copynumber: 2.4 Consensus size: 315
76846675 TAAAAAAAAT
76846685 AATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAA
1 AATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAA
76846750 ATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTA
66 ATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTA
* *
76846815 AAAATAAAATAAAAGTAGACAATATTTTTCGAGATTAAAATAAAATAAAATAACATATTCAAAAT
131 AAAATAAAATAAAAGTAGACAATATTTTTCGAGATAAAAATAAAATAAAATAAAATATTCAAAAT
* *
76846880 AAAACTTTAAATACAATTTAGTTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGACAAAACG
196 AAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGACAAAACA
76846945 TTTTTAGTGATTAAATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATAC
261 TTTTTAGTGATTAAATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATAC
* *
76847000 AATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGATAAAATATTTATAGTGATTAA
1 AATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAA
76847065 ATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTA
66 ATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTA
* * * *
76847130 AAAATTAAATAAAAGTAGACAATATTTTTTGTGATAAAAATAAAATAAAATAAAATATTTAAAAT
131 AAAATAAAATAAAAGTAGACAATATTTTTCGAGATAAAAATAAAATAAAATAAAATATTCAAAAT
76847195 AAAACTTTAAATACAATTTAATTTAATT-GGATAATTTAAAAATTAAAATAAAAGTAGACAAAAC
196 AAAACTTTAAATACAATTTAATTTAATTAGG-TAATTTAAAAATTAAAATAAAAGTAGACAAAAC
*
76847259 ATTTTTAGTGATTAAATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATAT
260 ATTTTTAGTGATTAAATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATAC
* * *
76847315 AATTTAATTTAATTAGGTAGTTTAAAAA-TAAAATAAAAGTAGACAAAATATTTTTCGTGATTAA
1 AATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAA
* * * * *
76847379 GA-TAAAATAAAATAACATATTCAAAATAAAACTTTAAATATAATTTAGTTTAATTAGGTAATTT
66 -ATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTT
76847443 AAAAATAAAATA
130 AAAAATAAAATA
76847455 GAATATTTAA
Statistics
Matches: 431, Mismatches: 22, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
314 103 0.24
315 328 0.76
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (315 bp):
AATTTAATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAA
ATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTA
AAAATAAAATAAAAGTAGACAATATTTTTCGAGATAAAAATAAAATAAAATAAAATATTCAAAAT
AAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGACAAAACA
TTTTTAGTGATTAAATTAAAATCAAATAAAATATTTAAAATAAAACTTTAAATAC
Found at i:76850465 original size:45 final size:44
Alignment explanation
Indices: 76850416--76850511 Score: 138
Period size: 44 Copynumber: 2.2 Consensus size: 44
76850406 GGGAACAGAT
* * *
76850416 TTAGGGAAAAAAGTATGGGGAACATGGGGGGATTTGGGGAAAATG
1 TTAGGGAAAAAACTATGGGGAAAAT-AGGGGATTTGGGGAAAATG
**
76850461 TTAGGGAAATGACTATGGGGAAAATAGGGGATTTGGGGAAAATG
1 TTAGGGAAAAAACTATGGGGAAAATAGGGGATTTGGGGAAAATG
76850505 TTAGGGA
1 TTAGGGA
76850512 TTTCGAGTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 25 0.54
45 21 0.46
ACGTcount: A:0.35, C:0.02, G:0.41, T:0.22
Consensus pattern (44 bp):
TTAGGGAAAAAACTATGGGGAAAATAGGGGATTTGGGGAAAATG
Found at i:76851368 original size:15 final size:15
Alignment explanation
Indices: 76851345--76851374 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
76851335 AAATAATAAT
76851345 TTATATATATTTATC
1 TTATATATATTTATC
*
76851360 TTATTTATATTTATC
1 TTATATATATTTATC
76851375 GTCTAAATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (15 bp):
TTATATATATTTATC
Found at i:76851413 original size:7 final size:7
Alignment explanation
Indices: 76851403--76851471 Score: 61
Period size: 7 Copynumber: 9.9 Consensus size: 7
76851393 AATTATACTT
76851403 TAAACCC
1 TAAACCC
76851410 TAAAACCC
1 T-AAACCC
76851418 TAAAACCC
1 T-AAACCC
76851426 TAAACCC
1 TAAACCC
*
76851433 TAAGCCC
1 TAAACCC
*
76851440 --ATCCC
1 TAAACCC
***
76851445 TAAATTA
1 TAAACCC
76851452 TAAACCC
1 TAAACCC
76851459 TAAACCC
1 TAAACCC
76851466 TAAACC
1 TAAACC
76851472 ATATCCCCAA
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
5 4 0.08
7 31 0.62
8 15 0.30
ACGTcount: A:0.43, C:0.38, G:0.01, T:0.17
Consensus pattern (7 bp):
TAAACCC
Found at i:76851417 original size:8 final size:8
Alignment explanation
Indices: 76851404--76851435 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
76851394 ATTATACTTT
76851404 AAACCCTA
1 AAACCCTA
76851412 AAACCCTA
1 AAACCCTA
76851420 AAACCCT-
1 AAACCCTA
76851427 AAACCCTA
1 AAACCCTA
76851435 A
1 A
76851436 GCCCATCCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 7 0.30
8 16 0.70
ACGTcount: A:0.50, C:0.38, G:0.00, T:0.12
Consensus pattern (8 bp):
AAACCCTA
Found at i:76851430 original size:15 final size:16
Alignment explanation
Indices: 76851404--76851435 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
76851394 ATTATACTTT
76851404 AAACCCTAAAACCCTA
1 AAACCCTAAAACCCTA
76851420 AAACCCT-AAACCCTA
1 AAACCCTAAAACCCTA
76851435 A
1 A
76851436 GCCCATCCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.50, C:0.38, G:0.00, T:0.12
Consensus pattern (16 bp):
AAACCCTAAAACCCTA
Found at i:76852128 original size:56 final size:56
Alignment explanation
Indices: 76852042--76852161 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
76852032 ACAAGGGATG
76852042 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGAAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGAAAAAATAAAATAAGAAGC
* *
76852098 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGAAAAAATAAAATAAGAAGC
76852154 ATGGGCAA
1 ATGGGCAA
76852162 TAAACTAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.46, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGAAAAAATAAAATAAGAAGC
Found at i:76853373 original size:40 final size:40
Alignment explanation
Indices: 76853289--76853553 Score: 333
Period size: 40 Copynumber: 6.7 Consensus size: 40
76853279 TCGAATGATG
* * * * *
76853289 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * * *
76853329 TCCGGACTACGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76853369 TCCGGGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTG-TGCGAGTTACTAAA
76853408 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
76853448 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76853488 TCCGGGTTAAGTCCCGAAGGCATTTGTGAGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
76853529 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
76853554 AACGAGTAGC
Statistics
Matches: 202, Mismatches: 16, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
38 3 0.01
39 31 0.15
40 155 0.77
41 13 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76853560 original size:80 final size:79
Alignment explanation
Indices: 76853290--76853586 Score: 327
Period size: 80 Copynumber: 3.7 Consensus size: 79
76853280 CGAATGATGT
* * * * * ** *
76853290 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTACGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* *
76853353 TGTGCGAGATACTAATT
64 TGTGCGAGTTACTAA-A
76853370 CCGGGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGA-GCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
76853433 GTGCGAGTTACTAAA
65 GTGCGAGTTACTAAA
* *
76853448 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 -CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
*
76853513 GTGAGAGTTACTATAA
65 GTGCGAGTTACTA-AA
* * * * *
76853529 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGG
76853587 TACGTGATTT
Statistics
Matches: 189, Mismatches: 20, Indels: 17
0.84 0.09 0.08
Matches are distributed among these distances:
78 1 0.01
79 77 0.41
80 106 0.56
81 5 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:76853567 original size:40 final size:40
Alignment explanation
Indices: 76853342--76853586 Score: 302
Period size: 40 Copynumber: 6.2 Consensus size: 40
76853332 GGACTACGAT
* * * *
76853342 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-C
1 CCGAAGGCATTTGAGCGAGTTACTAAATCCGGGTTAAGTC
76853381 CCGAAGGCA-TTGATGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGA-GCGAGTTACTAAATCCGGGTTAAGTC
*
76853421 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGAGCGAGTTACTAAATCCGGGTTAAGTC
*
76853461 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGAGCGAGTTACTAAATCCGGGTTAAGTC
* * * *
76853501 CCGAAGGCATTTGTGAGAGTTACTATAA-CCGGGCTATGTC
1 CCGAAGGCATTTGAGCGAGTTACTA-AATCCGGGTTAAGTC
* * * *
76853541 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATT
1 CCGAAGGCATTTGAGCGAGTTA-CTAAATCCGGGTTAAGTC
76853580 CCGAAGG
1 CCGAAGG
76853587 TACGTGATTT
Statistics
Matches: 184, Mismatches: 16, Indels: 12
0.87 0.08 0.06
Matches are distributed among these distances:
38 3 0.02
39 45 0.24
40 131 0.71
41 5 0.03
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGAGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:76859441 original size:56 final size:56
Alignment explanation
Indices: 76859355--76859474 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
76859345 ACAAGGGATG
76859355 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
* *
76859411 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATGAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76859467 ATGGGCAA
1 ATGGGCAA
76859475 TAAACTAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:76860875 original size:80 final size:79
Alignment explanation
Indices: 76860605--76860901 Score: 318
Period size: 80 Copynumber: 3.7 Consensus size: 79
76860595 CGAATGATGT
* * * * * * **
76860605 CCGGGCTAAGTCCCGAAGTC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* *
76860668 TGTGCGAGATACTAATT
64 TGTGCGAGTTACTAA-A
*
76860685 CCGAGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGA-GCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
76860748 GTGCGAGTTACTAAA
65 GTGCGAGTTACTAAA
* * *
76860763 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGTCATTT
1 -CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
76860828 GTGCGAGTTACTATAA
65 GTGCGAGTTACTA-AA
* * * * *
76860844 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGG
76860902 TACGTGATTT
Statistics
Matches: 186, Mismatches: 23, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
78 1 0.01
79 75 0.40
80 105 0.56
81 5 0.03
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:76860875 original size:120 final size:118
Alignment explanation
Indices: 76860657--76860901 Score: 316
Period size: 120 Copynumber: 2.1 Consensus size: 118
76860647 GGACTAAGAT
*
76860657 CCGAAGGCATTTGTGCGAGATACTAATTCCGAGCTAAGCCCGAAGGCATTGATGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGAGCTAAGCCCGAAGGCATTGATGCGAGTTACTAA
* ** *
76860722 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAGTC
66 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTAAATCC-GGTTAAATC
* * * *
76860776 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGTCATTTG-TGCGAGTTACT
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGAGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACT
* * *
76860840 ATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATT
64 A-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATC
76860895 CCGAAGG
1 CCGAAGG
76860902 TACGTGATTT
Statistics
Matches: 110, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
119 50 0.45
120 55 0.50
121 5 0.05
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (118 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGAGCTAAGCCCGAAGGCATTGATGCGAGTTACTAA
ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATC
Found at i:76860882 original size:40 final size:40
Alignment explanation
Indices: 76860604--76860868 Score: 324
Period size: 40 Copynumber: 6.7 Consensus size: 40
76860594 TCGAATGATG
* * * * * *
76860604 TCCGGGCTAAGTCCCGAAGTC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
76860644 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
76860684 TCCGAGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTG-TGCGAGTTACTAAA
76860723 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
76860763 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76860803 TCCGGGTTAAGTCCCGAAGTCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
76860844 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
76860869 AACGAGTAGC
Statistics
Matches: 200, Mismatches: 18, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
38 3 0.01
39 30 0.15
40 154 0.77
41 13 0.06
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76866757 original size:56 final size:56
Alignment explanation
Indices: 76866671--76866790 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
76866661 ACAAGGGATG
*
76866671 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTGAATGGAAAAATAAAATAAGAAGC
*
76866727 ATGGGCAAAACATGTCATGAAACATGTTGTGTGAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTGAATGGAAAAATAAAATAAGAAGC
76866783 ATGGGCAA
1 ATGGGCAA
76866791 TAAACTAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.45, C:0.09, G:0.24, T:0.22
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTGAATGGAAAAATAAAATAAGAAGC
Found at i:76868235 original size:40 final size:40
Alignment explanation
Indices: 76867917--76868221 Score: 395
Period size: 40 Copynumber: 7.7 Consensus size: 40
76867907 TCAAATGATG
* * * * * *
76867917 TCCGGGCTAAGTCCCGAAGGC-TTTTTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
76867957 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76867997 TCCGGGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTG-TGCGAGTTACTAAA
76868036 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
76868076 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
76868116 TCTGGGTTAAGTCCCGAAGGCATTTGCGCGAGTTACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
76868156 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
76868197 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
76868222 AACGAGTAGC
Statistics
Matches: 238, Mismatches: 20, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
38 3 0.01
39 31 0.13
40 193 0.81
41 11 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76870320 original size:162 final size:161
Alignment explanation
Indices: 76870022--76870482 Score: 663
Period size: 153 Copynumber: 2.9 Consensus size: 161
76870012 ATGCCCCTAT
* * * * *
76870022 AGCTCACCAAAAG-ACGACGTCGTTTTTCTCAAAACTTTTACGGCGTTTTTAAACAACCGTCGCT
1 AGCTCACC-AATGCACGACGTCGTATTTCTCAAAACTTTTATGGCG-TTTTAGACAACCGCCGCT
* * *
76870086 AATGCTTCACCTATTGTGGCGTTTTAGAAAAAAACACCGTGAATTCTCGATATATTGCAGCGTTT
64 AATGCTTCACCTATTGTGGCATTTTA-TAAAAAACACCGTGAATTCTCGATATATTGCGGCGTTT
76870151 ACAGGAAGCGCCGCTAAAGCCGCTAAAGCCTCTAC
128 ACAGGAAGCGCCGCT-AAGCCGCTAAAGCCTCTAC
76870186 AGCTCACCAATGCACGACGTCGTATTTCTCAAAACTTTTATGGCGTTTTAGACAACCGCCGCTAA
1 AGCTCACCAATGCACGACGTCGTATTTCTCAAAACTTTTATGGCGTTTTAGACAACCGCCGCTAA
76870251 TGCTTCACCTATTGTGGCATTTTATAAAAAACACCGTGAATTCTCGATATATTGCGGCGTTTACA
66 TGCTTCACCTATTGTGGCATTTTATAAAAAACACCGTGAATTCTCGATATATTGCGGCGTTTACA
76870316 GGAA-----GC---GCCGCTAAAGCCTCTAC
131 GGAAGCGCCGCTAAGCCGCTAAAGCCTCTAC
* * *
76870339 AGCTCACCAATGCACGACGTAGTATTTCTCAAAACTTTTGTGGCGTTTTAGACAACCGCCACTAA
1 AGCTCACCAATGCACGACGTCGTATTTCTCAAAACTTTTATGGCGTTTTAGACAACCGCCGCTAA
** * * *
76870404 TGCTTCACCTATTGTGGCATTTTATAAAAAATGCCGCT-AATTCTCTATATATTGCGGCATTTTC
66 TGCTTCACCTATTGTGGCATTTTATAAAAAACACCG-TGAATTCTCGATATATTGCGGCGTTTAC
76870468 AGGAAGCGCCGCTAA
130 AGGAAGCGCCGCTAA
76870483 TGCCTATATA
Statistics
Matches: 271, Mismatches: 16, Indels: 23
0.87 0.05 0.07
Matches are distributed among these distances:
153 141 0.52
154 1 0.00
157 2 0.01
158 2 0.01
162 43 0.16
163 44 0.16
164 38 0.14
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (161 bp):
AGCTCACCAATGCACGACGTCGTATTTCTCAAAACTTTTATGGCGTTTTAGACAACCGCCGCTAA
TGCTTCACCTATTGTGGCATTTTATAAAAAACACCGTGAATTCTCGATATATTGCGGCGTTTACA
GGAAGCGCCGCTAAGCCGCTAAAGCCTCTAC
Found at i:76870523 original size:153 final size:153
Alignment explanation
Indices: 76870169--76870558 Score: 541
Period size: 153 Copynumber: 2.5 Consensus size: 153
76870159 CGCCGCTAAA
*
76870169 GCCGCTAAAGCCTCTACAGCTCACCAATGCACGACGTCGTATTTCTCAAAACTTTTATGGCGTTT
1 GCCGCTAAAGCCTCTACAGCTCACCAATGCACGACGTCGTATTTCTCAAAACTTTTGTGGCGTTT
*
76870234 TAGACAACCGCCGCTAATGCTTCACCTATTGTGGCATTTTATAAAAAACACCGTGAATTCTCGAT
66 TAGACAACCGCCACTAATGCTTCACCTATTGTGGCATTTTATAAAAAACACCGTGAATTCTCGAT
*
76870299 ATATTGCGGCGTTTACAGGAAGC
131 ATATTGCGGCATTTACAGGAAGC
*
76870322 GCCGCTAAAGCCTCTACAGCTCACCAATGCACGACGTAGTATTTCTCAAAACTTTTGTGGCGTTT
1 GCCGCTAAAGCCTCTACAGCTCACCAATGCACGACGTCGTATTTCTCAAAACTTTTGTGGCGTTT
** *
76870387 TAGACAACCGCCACTAATGCTTCACCTATTGTGGCATTTTATAAAAAATGCCGCT-AATTCTCTA
66 TAGACAACCGCCACTAATGCTTCACCTATTGTGGCATTTTATAAAAAACACCG-TGAATTCTCGA
*
76870451 TATATTGCGGCATTTTCAGGAAGC
130 TATATTGCGGCATTTACAGGAAGC
* * * * * * * * * * * *
76870475 GCCGCTAATGCCTATATAGCTGAGCAATACACGGCATCGT-TTTCCTCAACATTTTTGCGGTGTT
1 GCCGCTAAAGCCTCTACAGCTCACCAATGCACGACGTCGTATTT-CTCAAAACTTTTGTGGCG-T
* *
76870539 TTTACAAAACCGCCACTAAT
64 TTTAGACAACCGCCACTAAT
76870559 AGTCCCCTCT
Statistics
Matches: 211, Mismatches: 23, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
152 3 0.01
153 188 0.89
154 20 0.09
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.30
Consensus pattern (153 bp):
GCCGCTAAAGCCTCTACAGCTCACCAATGCACGACGTCGTATTTCTCAAAACTTTTGTGGCGTTT
TAGACAACCGCCACTAATGCTTCACCTATTGTGGCATTTTATAAAAAACACCGTGAATTCTCGAT
ATATTGCGGCATTTACAGGAAGC
Found at i:76873579 original size:27 final size:28
Alignment explanation
Indices: 76873495--76873592 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
76873485 CATGAGATTT
* * * *
76873495 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
76873524 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
76873552 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
76873579 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
76873593 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:76873603 original size:27 final size:27
Alignment explanation
Indices: 76873523--76873605 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
76873513 TAAATTGTAC
* *
76873523 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
76873551 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
76873578 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
76873605 A
1 A
76873606 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:76873606 original size:29 final size:27
Alignment explanation
Indices: 76873495--76873606 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
76873485 CATGAGATTT
** * *
76873495 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
76873524 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
76873552 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
76873579 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
76873607 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:76881673 original size:27 final size:28
Alignment explanation
Indices: 76881589--76881686 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
76881579 CATGAGATTT
* * * *
76881589 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
76881618 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
76881646 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
76881673 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
76881687 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:76881697 original size:27 final size:27
Alignment explanation
Indices: 76881617--76881699 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
76881607 TAAATTGTAC
* *
76881617 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
76881645 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
76881672 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
76881699 A
1 A
76881700 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:76881700 original size:29 final size:27
Alignment explanation
Indices: 76881589--76881700 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
76881579 CATGAGATTT
** * *
76881589 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
76881618 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
76881646 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
76881673 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
76881701 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:76901268 original size:20 final size:21
Alignment explanation
Indices: 76901243--76901284 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
76901233 ATATTTAACA
76901243 ATAAAACTT-AACAAAC-TATC
1 ATAAAACTTCAA-AAACATATC
76901263 ATAAAACTTCAAAAACATATC
1 ATAAAACTTCAAAAACATATC
76901284 A
1 A
76901285 AATCCATTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.57, C:0.19, G:0.00, T:0.24
Consensus pattern (21 bp):
ATAAAACTTCAAAAACATATC
Found at i:76909037 original size:49 final size:49
Alignment explanation
Indices: 76908981--76909212 Score: 284
Period size: 49 Copynumber: 4.7 Consensus size: 49
76908971 CTAGTACGCA
* *
76908981 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCCGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* ** ** *
76909030 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGGTACACG
* * * * * *
76909080 TAGTAGCCTGCACTTAGTACTACATACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACG
*
76909131 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* *
76909180 TAGTAGCCTGCACTTAGTATTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
76909213 TCACAATAGA
Statistics
Matches: 153, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 72 0.47
50 45 0.29
51 36 0.24
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
Found at i:76909154 original size:101 final size:98
Alignment explanation
Indices: 76908981--76909212 Score: 293
Period size: 100 Copynumber: 2.3 Consensus size: 98
76908971 CTAGTACGCA
* * *
76908981 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCCGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCCGTACACATAGTAGCCTGCACTTA
* **
76909046 GTACTACACACGTGACCTAACCATTTGATACACG
66 GTACTACACACGCGACC-AACCATCCGATACACG
* * ** *
76909080 TAGTAGCCTGCACTTAGTACTACATACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCCGTACACATAGTAGCCTGCACT
* ** *
76909145 TAGTACTACACATGCGACCAATTATCCGGTACACG
64 TAGTACTACACACGCGACCAACCATCCGATACACG
*
76909180 TAGTAGCCTGCACTTAGTATTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
76909213 TCACAATAGA
Statistics
Matches: 113, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
99 29 0.26
100 43 0.38
101 41 0.36
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCCGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCCGATACACG
Found at i:76911918 original size:8 final size:8
Alignment explanation
Indices: 76911897--76911926 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
76911887 AAAGACCAAG
76911897 TAAATACT
1 TAAATACT
76911905 TAAAATACT
1 T-AAATACT
76911914 TAAATACT
1 TAAATACT
76911922 TAAAT
1 TAAAT
76911927 TCACTATACC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (8 bp):
TAAATACT
Found at i:76912517 original size:48 final size:48
Alignment explanation
Indices: 76912399--76912518 Score: 195
Period size: 48 Copynumber: 2.5 Consensus size: 48
76912389 GCCATATCAG
* * *
76912399 GATATGGTCTTACATGGGATCACATGTCGATGCCAATGCCATGTCCTA
1 GATATGGTCTTACATGGGATCATAGGTCGATGCCAATGCCATGTCCCA
* *
76912447 CACATGGTCTTACATGGGATCATAGGTCGATGCCAATGCCATGTCCCA
1 GATATGGTCTTACATGGGATCATAGGTCGATGCCAATGCCATGTCCCA
76912495 GATATGGTCTTACATGGGATCATA
1 GATATGGTCTTACATGGGATCATA
76912519 TATCAATGTC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 65 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
GATATGGTCTTACATGGGATCATAGGTCGATGCCAATGCCATGTCCCA
Found at i:76915725 original size:26 final size:23
Alignment explanation
Indices: 76915696--76915835 Score: 90
Period size: 23 Copynumber: 5.9 Consensus size: 23
76915686 GGACTAATCA
*
76915696 CAGCTTGTATGAGCTTACCGATATAT
1 CAGCTCGTATGAGCTTACCG-T-T-T
* *
76915722 CAGCTCGTAAGAGCTTACTGTTT
1 CAGCTCGTATGAGCTTACCGTTT
76915745 CAGCTCGTATGAGCTTA-C-TATT
1 CAGCTCGTATGAGCTTACCGT-TT
*
76915767 CAGCTC-AATAGAGCTTACCGTTT
1 CAGCTCGTAT-GAGCTTACCGTTT
* * *
76915790 CATCTC-AATAGAGCTTACTGTTCAT
1 CAGCTCGTAT-GAGCTTACCGTT--T
* *
76915815 CAGCTCAGGAGGAGCTTACCG
1 CAGCTC-GTATGAGCTTACCG
76915836 ATTATGGCTC
Statistics
Matches: 94, Mismatches: 12, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
21 3 0.03
22 15 0.16
23 40 0.43
24 2 0.02
25 7 0.07
26 26 0.28
27 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (23 bp):
CAGCTCGTATGAGCTTACCGTTT
Found at i:76915751 original size:23 final size:23
Alignment explanation
Indices: 76915731--76915821 Score: 105
Period size: 23 Copynumber: 3.9 Consensus size: 23
76915721 TCAGCTCGTA
*
76915731 AGAGCTTACTGTTTCAGCTC-GT
1 AGAGCTTACTGTTTCAGCTCAAT
*
76915753 ATGAGCTTACT-ATTCAGCTCAAT
1 A-GAGCTTACTGTTTCAGCTCAAT
* *
76915776 AGAGCTTACCGTTTCATCTCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
76915799 AGAGCTTACTGTTCATCAGCTCA
1 AGAGCTTACTGTT--TCAGCTCA
76915822 GGAGGAGCTT
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
22 17 0.30
23 33 0.58
25 7 0.12
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.34
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:76915790 original size:45 final size:45
Alignment explanation
Indices: 76915696--76915813 Score: 114
Period size: 45 Copynumber: 2.5 Consensus size: 45
76915686 GGACTAATCA
* * *
76915696 CAGCTTGTATGAGCTTACCGATATATCAGCTCGTAAGAGCTTACTGTTT
1 CAGCTCGTATGAGCTTA-C--TAT-TCAGCTCATAAGAGCTTACCGTTT
76915745 CAGCTCGTATGAGCTTACTATTCAGCTCA-ATAGAGCTTACCGTTT
1 CAGCTCGTATGAGCTTACTATTCAGCTCATA-AGAGCTTACCGTTT
* * *
76915790 CATCTC-AATAGAGCTTACTGTTCA
1 CAGCTCGTAT-GAGCTTACTATTCA
76915814 TCAGCTCAGG
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
44 3 0.05
45 38 0.62
46 3 0.05
48 1 0.02
49 16 0.26
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (45 bp):
CAGCTCGTATGAGCTTACTATTCAGCTCATAAGAGCTTACCGTTT
Found at i:76922162 original size:10 final size:10
Alignment explanation
Indices: 76922149--76922179 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
76922139 TATAATTATT
76922149 TTATATTAAA
1 TTATATTAAA
76922159 TTATATTAAA
1 TTATATTAAA
*
76922169 ATATATTAAA
1 TTATATTAAA
76922179 T
1 T
76922180 ATTTTTATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (10 bp):
TTATATTAAA
Found at i:76922668 original size:17 final size:18
Alignment explanation
Indices: 76922648--76922682 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
76922638 AAGTTTTTTC
76922648 CTAAATT-CTATTTTTAT
1 CTAAATTACTATTTTTAT
*
76922665 CTAAATTATTATTTTTAT
1 CTAAATTACTATTTTTAT
76922683 TATTATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (18 bp):
CTAAATTACTATTTTTAT
Found at i:76934666 original size:20 final size:21
Alignment explanation
Indices: 76934641--76934680 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
76934631 GACTTGAAGC
76934641 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
76934661 AGGGCAACACGCTCGTGTGG
1 AGGGCAACACGCCCGTGTGG
76934681 CCATTAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:76943160 original size:47 final size:46
Alignment explanation
Indices: 76943099--76943267 Score: 159
Period size: 47 Copynumber: 3.6 Consensus size: 46
76943089 TGTGTGCTAT
76943099 TGTAAGACATGTCTGGGACAT-GCATCAGCCACATTATGAGAGCCAG
1 TGTAAGACATGTCTGGGACATGGCATC-GCCACATTATGAGAGCCAG
* * *
76943145 TGTAAGACCATGTCTGGGACATGGCATCG--GCATTGAGACGAGAGCTAG
1 TGTAAGA-CATGTCTGGGACATGGCATCGCCACATT---ATGAGAGCCAG
* * * *
76943193 TGTAAGACATGTTTGGGACAT-GCATCGGCCTCGTGATGTA-AGCCAG
1 TGTAAGACATGTCTGGGACATGGCATC-GCCACATTATG-AGAGCCAG
*
76943239 TGTAAGGCCATGTCTGGGACATGGCATCG
1 TGTAA-GACATGTCTGGGACATGGCATCG
76943268 ACATTACACT
Statistics
Matches: 101, Mismatches: 11, Indels: 21
0.76 0.08 0.16
Matches are distributed among these distances:
45 4 0.04
46 24 0.24
47 45 0.45
48 26 0.26
49 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGGCATCGCCACATTATGAGAGCCAG
Found at i:76943195 original size:48 final size:48
Alignment explanation
Indices: 76943136--76943272 Score: 172
Period size: 47 Copynumber: 2.9 Consensus size: 48
76943126 GCCACATTAT
76943136 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC
* * * * * *
76943184 GAGAGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGTGAT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC
* *
76943230 GTA-AGCCAGTGTAAGGCCATGTCTGGGACATGGCATCGACATT
1 G-AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
76943273 ACACTGTATG
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
46 24 0.32
47 27 0.36
48 23 0.31
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.23
Consensus pattern (48 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC
Found at i:76943260 original size:94 final size:94
Alignment explanation
Indices: 76943094--76943272 Score: 270
Period size: 94 Copynumber: 1.9 Consensus size: 94
76943084 TTAATTGTGT
* *
76943094 GCTATTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGAGAGCCAGTGTAAGACCATGTC
*
76943159 TGGGACATGGCATCGGCATTGAGACGAGA
66 TGGGACATGGCATCGACATTGAGACGAGA
* * * * *
76943188 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGTGATGTA-AGCCAGTGTAAGGCCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATG-AGAGCCAGTGTAAGACCATGT
76943252 CTGGGACATGGCATCGACATT
65 CTGGGACATGGCATCGACATT
76943273 ACACTGTATG
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
94 75 0.99
95 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGACATTGAGACGAGA
Found at i:76951039 original size:21 final size:21
Alignment explanation
Indices: 76951011--76951064 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
76951001 AGTCTGTAAA
76951011 ACGAGCGTGTCCTAGGGTCAC
1 ACGAGCGTGTCCTAGGGTCAC
* *
76951032 ATGAGCGTGTGCTAGGGTCAC
1 ACGAGCGTGTCCTAGGGTCAC
*
76951053 ACGGGCGTGTCC
1 ACGAGCGTGTCC
76951065 CTTGGACCAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.17, C:0.26, G:0.37, T:0.20
Consensus pattern (21 bp):
ACGAGCGTGTCCTAGGGTCAC
Found at i:76952466 original size:43 final size:43
Alignment explanation
Indices: 76952405--76952487 Score: 157
Period size: 43 Copynumber: 1.9 Consensus size: 43
76952395 CCTCCTTCTA
76952405 TAACCAGTGTGGGTAGTGTCGGTAATCCCAAACCAAAATGCTG
1 TAACCAGTGTGGGTAGTGTCGGTAATCCCAAACCAAAATGCTG
*
76952448 TAACCAGTGTTGGTAGTGTCGGTAATCCCAAACCAAAATG
1 TAACCAGTGTGGGTAGTGTCGGTAATCCCAAACCAAAATG
76952488 TAAGCATTGA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (43 bp):
TAACCAGTGTGGGTAGTGTCGGTAATCCCAAACCAAAATGCTG
Found at i:76962195 original size:20 final size:20
Alignment explanation
Indices: 76962166--76962207 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
76962156 CATATCTCAT
*
76962166 ATAATGTTAGATACTCCAGA
1 ATAATATTAGATACTCCAGA
*
76962186 ATAATATTAGATACTCCGGA
1 ATAATATTAGATACTCCAGA
76962206 AT
1 AT
76962208 CTCGCACCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.31
Consensus pattern (20 bp):
ATAATATTAGATACTCCAGA
Found at i:76962252 original size:96 final size:96
Alignment explanation
Indices: 76962088--76962267 Score: 324
Period size: 96 Copynumber: 1.9 Consensus size: 96
76962078 GAACCATTTG
* *
76962088 GAATAATATTAGATACTCCGAAATCTCGCACCTTAAGAGTCAATACAAGGCCGAAGCTATTTCAA
1 GAATAATATTAGATACTCCGAAATCTCGCACCCTAAGAGCCAATACAAGGCCGAAGCTATTTCAA
76962153 TCTCATATCTCATATAATGTTAGATACTCCA
66 TCTCATATCTCATATAATGTTAGATACTCCA
* *
76962184 GAATAATATTAGATACTCCGGAATCTCGCACCCTAAGTGCCAATACAAGGCCGAAGCTATTTCAA
1 GAATAATATTAGATACTCCGAAATCTCGCACCCTAAGAGCCAATACAAGGCCGAAGCTATTTCAA
76962249 TCTCATATCTCATATAATG
66 TCTCATATCTCATATAATG
76962268 CTCACTCTCG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 80 1.00
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (96 bp):
GAATAATATTAGATACTCCGAAATCTCGCACCCTAAGAGCCAATACAAGGCCGAAGCTATTTCAA
TCTCATATCTCATATAATGTTAGATACTCCA
Found at i:76964284 original size:42 final size:42
Alignment explanation
Indices: 76964237--76964352 Score: 130
Period size: 42 Copynumber: 2.8 Consensus size: 42
76964227 AGAGATTCTG
76964237 TATAAGACCATATCTGGGATATGGCATC-AGTATG-TGATTTCA
1 TATAAGACCATATCTGGGATATGGCATCGA-TATGAT-ATTTCA
* ** *
76964279 TATAAGACCATGTCAAGGACATGGCATCGATATGATATTTCA
1 TATAAGACCATATCTGGGATATGGCATCGATATGATATTTCA
* *
76964321 TGTAAGACCATAT-TCGGGATATGGCATTGATA
1 TATAAGACCATATCT-GGGATATGGCATCGATA
76964353 CGGTACTATG
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
42 59 0.97
43 2 0.03
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.31
Consensus pattern (42 bp):
TATAAGACCATATCTGGGATATGGCATCGATATGATATTTCA
Found at i:76986346 original size:17 final size:17
Alignment explanation
Indices: 76986324--76986356 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
76986314 CTTACATGTA
76986324 ATGTTATAATTACTAAT
1 ATGTTATAATTACTAAT
76986341 ATGTTATAATTACTAA
1 ATGTTATAATTACTAA
76986357 CCTTATGAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.45
Consensus pattern (17 bp):
ATGTTATAATTACTAAT
Found at i:76986691 original size:2 final size:2
Alignment explanation
Indices: 76986686--76986722 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
76986676 CATATATATA
76986686 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
76986723 TTTGAAATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:76991039 original size:7 final size:7
Alignment explanation
Indices: 76991027--76991059 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
76991017 TCCCATCCCA
76991027 TCCCACC
1 TCCCACC
76991034 TCCCACC
1 TCCCACC
76991041 TCCCACC
1 TCCCACC
76991048 TCCCACC
1 TCCCACC
76991055 TCCCA
1 TCCCA
76991060 TCTACCCCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.15, C:0.70, G:0.00, T:0.15
Consensus pattern (7 bp):
TCCCACC
Found at i:76991149 original size:18 final size:17
Alignment explanation
Indices: 76991126--76991185 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 17
76991116 CTCCCTCCTA
76991126 TTTACTTTCCCTCAAACT
1 TTTACTTTCCCT-AAACT
* *
76991144 TTTACTCT-CCAAAACTT
1 TTTACTTTCCCTAAAC-T
*
76991161 TTTATTTTTCCCTAAACT
1 TTTA-CTTTCCCTAAACT
76991179 TTTACTT
1 TTTACTT
76991186 CCCACCCTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
16 4 0.12
17 9 0.27
18 14 0.42
19 6 0.18
ACGTcount: A:0.23, C:0.27, G:0.00, T:0.50
Consensus pattern (17 bp):
TTTACTTTCCCTAAACT
Found at i:76995435 original size:19 final size:21
Alignment explanation
Indices: 76995389--76995436 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 21
76995379 GATAAAACCC
76995389 TTTAATAATAATAAAACTTAT
1 TTTAATAATAATAAAACTTAT
76995410 TTT-ATAA-AAT-AAA-TTATT
1 TTTAATAATAATAAAACTTA-T
76995428 TTTAATAAT
1 TTTAATAAT
76995437 TGACTTGTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
17 3 0.12
18 7 0.29
19 7 0.29
20 4 0.17
21 3 0.12
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
TTTAATAATAATAAAACTTAT
Found at i:76996305 original size:22 final size:21
Alignment explanation
Indices: 76996280--76996329 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
76996270 AAAGATTGTG
*
76996280 TTATAAGCATAAACAATTTATA
1 TTATAAGCATAAA-AATCTATA
* *
76996302 TTATAAATCCTAAAAATCTATA
1 TTAT-AAGCATAAAAATCTATA
76996324 TTATAA
1 TTATAA
76996330 ACTAATGAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 2 0.08
22 15 0.62
23 7 0.29
ACGTcount: A:0.50, C:0.10, G:0.02, T:0.38
Consensus pattern (21 bp):
TTATAAGCATAAAAATCTATA
Found at i:76998831 original size:13 final size:14
Alignment explanation
Indices: 76998813--76998843 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
76998803 TTGTCCAATT
76998813 CAGATACAGATA-A
1 CAGATACAGATACA
76998826 CAGATACAGATACA
1 CAGATACAGATACA
76998840 CAGA
1 CAGA
76998844 ATCCTACCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.52, C:0.19, G:0.16, T:0.13
Consensus pattern (14 bp):
CAGATACAGATACA
Found at i:76999122 original size:32 final size:32
Alignment explanation
Indices: 76999084--76999147 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
76999074 GACATGCTCC
76999084 ACATGCTTATATACAGATAACAAACATACATT
1 ACATGCTTATATACAGATAACAAACATACATT
*
76999116 ACATGCTTATATACAGATAATAAACATACATT
1 ACATGCTTATATACAGATAACAAACATACATT
76999148 TAGTATCCTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.47, C:0.17, G:0.06, T:0.30
Consensus pattern (32 bp):
ACATGCTTATATACAGATAACAAACATACATT
Found at i:77002205 original size:22 final size:22
Alignment explanation
Indices: 77002180--77002244 Score: 52
Period size: 18 Copynumber: 3.2 Consensus size: 22
77002170 GTTGTTAAGC
77002180 ACTTCTTTTATGTATTTTCCCA
1 ACTTCTTTTATGTATTTTCCCA
* * *
77002202 ACTTAC--TTGTGCA--AT-CCA
1 ACTT-CTTTTATGTATTTTCCCA
77002220 -CTTCTTTTATGTATTTTCCCA
1 ACTTCTTTTATGTATTTTCCCA
77002241 ACTT
1 ACTT
77002245 ACTTGTGCAA
Statistics
Matches: 30, Mismatches: 6, Indels: 14
0.60 0.12 0.28
Matches are distributed among these distances:
16 1 0.03
17 3 0.10
18 8 0.27
19 1 0.03
20 1 0.03
21 8 0.27
22 7 0.23
23 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.06, T:0.49
Consensus pattern (22 bp):
ACTTCTTTTATGTATTTTCCCA
Found at i:77002222 original size:39 final size:39
Alignment explanation
Indices: 77002179--77002258 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
77002169 TGTTGTTAAG
77002179 CACTTCTTTTATGTATTTTCCCAACTTACTTGTGCAATC
1 CACTTCTTTTATGTATTTTCCCAACTTACTTGTGCAATC
77002218 CACTTCTTTTATGTATTTTCCCAACTTACTTGTGCAATC
1 CACTTCTTTTATGTATTTTCCCAACTTACTTGTGCAATC
77002257 CA
1 CA
77002259 ATCCAAACTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.21, C:0.26, G:0.07, T:0.45
Consensus pattern (39 bp):
CACTTCTTTTATGTATTTTCCCAACTTACTTGTGCAATC
Found at i:77003832 original size:20 final size:19
Alignment explanation
Indices: 77003794--77003835 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
77003784 GACACCACCA
* *
77003794 TTTTTTTAATAAATTTTAT
1 TTTTTTTAAAAAATATTAT
77003813 TTTTTTTAAAAACATATTAT
1 TTTTTTTAAAAA-ATATTAT
77003833 TTT
1 TTT
77003836 ATTAGTGGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTTTTTAAAAAATATTAT
Found at i:77004270 original size:24 final size:26
Alignment explanation
Indices: 77004223--77004271 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 26
77004213 GTTTTTTAAT
*
77004223 TTATTTTAAAGTTATTTTGTTAGTTA
1 TTATTATAAAGTTATTTTGTTAGTTA
77004249 TTATTATAAA-TTA-TTTGTTAGTT
1 TTATTATAAAGTTATTTTGTTAGTT
77004272 TAATGTTTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 10 0.45
25 3 0.14
26 9 0.41
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.61
Consensus pattern (26 bp):
TTATTATAAAGTTATTTTGTTAGTTA
Found at i:77006613 original size:12 final size:12
Alignment explanation
Indices: 77006596--77006621 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
77006586 GCGGGAGTAC
77006596 GTGCCGAGGATT
1 GTGCCGAGGATT
77006608 GTGCCGAGGATT
1 GTGCCGAGGATT
77006620 GT
1 GT
77006622 CATTGAGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.42, T:0.27
Consensus pattern (12 bp):
GTGCCGAGGATT
Found at i:77010143 original size:8 final size:8
Alignment explanation
Indices: 77010125--77010162 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
77010115 TTTAAGAAAT
77010125 TAATAATTA
1 TAATAA-TA
77010134 TAATAATA
1 TAATAATA
*
77010142 TAATAGT-
1 TAATAATA
77010149 TAATAATA
1 TAATAATA
77010157 TAATAA
1 TAATAA
77010163 AAGAAATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
7 6 0.23
8 14 0.54
9 6 0.23
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (8 bp):
TAATAATA
Found at i:77010170 original size:24 final size:24
Alignment explanation
Indices: 77010124--77010170 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
77010114 ATTTAAGAAA
* *
77010124 TTAATAATTATAATAATATAATAG
1 TTAATAATTATAATAAAAAAATAG
77010148 TTAATAA-TATAATAAAAGAAATA
1 TTAATAATTATAATAAAA-AAATA
77010171 AAATAAAGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (24 bp):
TTAATAATTATAATAAAAAAATAG
Found at i:77010246 original size:10 final size:10
Alignment explanation
Indices: 77010218--77010252 Score: 52
Period size: 10 Copynumber: 3.3 Consensus size: 10
77010208 ACATGGAAAG
77010218 AAAGAAAGAA
1 AAAGAAAGAA
77010228 AAAGGGAAAGAA
1 AAA--GAAAGAA
77010240 AAAGAAAGAA
1 AAAGAAAGAA
77010250 AAA
1 AAA
77010253 ATAGGGTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 13 0.57
12 10 0.43
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (10 bp):
AAAGAAAGAA
Found at i:77012065 original size:13 final size:13
Alignment explanation
Indices: 77012047--77012075 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
77012037 ATAGGAACCC
77012047 CACGGGCTGGCCA
1 CACGGGCTGGCCA
77012060 CACGGGCTGGCCA
1 CACGGGCTGGCCA
77012073 CAC
1 CAC
77012076 AGCCATGTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.41, G:0.34, T:0.07
Consensus pattern (13 bp):
CACGGGCTGGCCA
Found at i:77012980 original size:19 final size:21
Alignment explanation
Indices: 77012953--77012991 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
77012943 GTTTACAATA
*
77012953 ATAATATAT-TAAA-ATAAAC
1 ATAAAATATCTAAATATAAAC
77012972 ATAAAATATCTAAATATAAA
1 ATAAAATATCTAAATATAAA
77012992 AAACATACGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 4 0.24
21 5 0.29
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (21 bp):
ATAAAATATCTAAATATAAAC
Found at i:77013148 original size:16 final size:17
Alignment explanation
Indices: 77013127--77013164 Score: 69
Period size: 16 Copynumber: 2.3 Consensus size: 17
77013117 AAAAACAAAT
77013127 AAATTTACATT-ATAAA
1 AAATTTACATTCATAAA
77013143 AAATTTACATTCATAAA
1 AAATTTACATTCATAAA
77013160 AAATT
1 AAATT
77013165 ACAAAACACT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (17 bp):
AAATTTACATTCATAAA
Found at i:77013209 original size:51 final size:49
Alignment explanation
Indices: 77013153--77013301 Score: 124
Period size: 43 Copynumber: 3.1 Consensus size: 49
77013143 AAATTTACAT
77013153 TCATAAAAAATTACAAAACACTAAACTAAATACTAACAATTTATAATCTAA
1 TCATAAAAAATTACAAAACACTAAACTAAA-ACTAACAATTTATAA-CTAA
* *
77013204 TCAT---AAATTACTAATAA-AAT-AACTATAAA--AA-AA-TT-T-AC-AT
1 TCATAAAAAATTAC-AA-AACACTAAACTA-AAACTAACAATTTATAACTAA
*
77013244 TCATAAAAAATTACAAAACACTAAACTAAACACTAACATTTTATAACCTAA
1 TCATAAAAAATTACAAAACACTAAACTAAA-ACTAACAATTTATAA-CTAA
77013295 TCATAAA
1 TCATAAA
77013302 TTACTAACAA
Statistics
Matches: 76, Mismatches: 5, Indels: 34
0.66 0.04 0.30
Matches are distributed among these distances:
40 5 0.07
41 3 0.04
42 7 0.09
43 14 0.18
44 2 0.03
45 4 0.05
46 3 0.04
47 2 0.03
48 14 0.18
49 7 0.09
50 3 0.04
51 12 0.16
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.28
Consensus pattern (49 bp):
TCATAAAAAATTACAAAACACTAAACTAAAACTAACAATTTATAACTAA
Found at i:77013214 original size:48 final size:47
Alignment explanation
Indices: 77013160--77013305 Score: 137
Period size: 48 Copynumber: 3.1 Consensus size: 47
77013150 CATTCATAAA
77013160 AAATTACAAAACACTAAACTAAATACTAACAATTTATAATCTAATCAT
1 AAATTACAAAACACTAAACTAAA-ACTAACAATTTATAATCTAATCAT
* * *
77013208 AAATTACTAATAA-AAT-AACTATAAA--AA-AATTTACATTCATAA--A-
1 AAATTAC-AA-AACACTAAACTA-AAACTAACAATTTATAATC-TAATCAT
* *
77013251 AAATTACAAAACACTAAACTAAACACTAACATTTTATAACCTAATCAT
1 AAATTACAAAACACTAAACTAAA-ACTAACAATTTATAATCTAATCAT
77013299 AAATTAC
1 AAATTAC
77013306 TAACAAAATA
Statistics
Matches: 77, Mismatches: 8, Indels: 26
0.69 0.07 0.23
Matches are distributed among these distances:
41 2 0.03
42 6 0.08
43 13 0.17
44 1 0.01
45 14 0.18
46 12 0.16
47 1 0.01
48 20 0.26
49 6 0.08
50 2 0.03
ACGTcount: A:0.55, C:0.16, G:0.00, T:0.29
Consensus pattern (47 bp):
AAATTACAAAACACTAAACTAAAACTAACAATTTATAATCTAATCAT
Found at i:77013241 original size:91 final size:91
Alignment explanation
Indices: 77013140--77013330 Score: 337
Period size: 91 Copynumber: 2.1 Consensus size: 91
77013130 TTTACATTAT
* *
77013140 AAAAAATTTACATTCATAAAAAATTACAAAACACTAAACTAAATACTAACAATTTATAATCTAAT
1 AAAAAATTTACATTCATAAAAAATTACAAAACACTAAACTAAACACTAACAATTTATAACCTAAT
*
77013205 CATAAATTACTAATAAAATAACTATA
66 CATAAATTACTAACAAAATAACTATA
*
77013231 AAAAAATTTACATTCATAAAAAATTACAAAACACTAAACTAAACACTAACATTTTATAACCTAAT
1 AAAAAATTTACATTCATAAAAAATTACAAAACACTAAACTAAACACTAACAATTTATAACCTAAT
77013296 CATAAATTACTAACAAAATAACTATA
66 CATAAATTACTAACAAAATAACTATA
*
77013322 AAATAATTT
1 AAAAAATTT
77013331 TAAAAAATAA
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
91 95 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (91 bp):
AAAAAATTTACATTCATAAAAAATTACAAAACACTAAACTAAACACTAACAATTTATAACCTAAT
CATAAATTACTAACAAAATAACTATA
Done.