Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 235 of 333
Found at i:77381392 original size:2 final size:2
Alignment explanation
Indices: 77381387--77381429 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
77381377 AATTGTGTTT
77381387 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
77381429 T
1 T
77381430 ATTTCTTCTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:77386323 original size:9 final size:9
Alignment explanation
Indices: 77386309--77386341 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
77386299 ATTCGAGTTG
77386309 ACTCGAATA
1 ACTCGAATA
*
77386318 ACTCGATTA
1 ACTCGAATA
77386327 ACTCGAATA
1 ACTCGAATA
77386336 ACTCGA
1 ACTCGA
77386342 TTCGTTTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.24
Consensus pattern (9 bp):
ACTCGAATA
Found at i:77386332 original size:18 final size:18
Alignment explanation
Indices: 77386309--77386343 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
77386299 ATTCGAGTTG
77386309 ACTCGAATAACTCGATTA
1 ACTCGAATAACTCGATTA
77386327 ACTCGAATAACTCGATT
1 ACTCGAATAACTCGATT
77386344 CGTTTAACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (18 bp):
ACTCGAATAACTCGATTA
Found at i:77387072 original size:31 final size:32
Alignment explanation
Indices: 77387023--77387097 Score: 79
Period size: 31 Copynumber: 2.5 Consensus size: 32
77387013 TAGAACATTT
77387023 TTAAA-AAAAAAC--TT-AATAACTCAATAAC
1 TTAAATAAAAAACTTTTAAATAACTCAATAAC
* ***
77387051 TTAAAT-AAAAACTTTTAAATAATTTGGTAAC
1 TTAAATAAAAAACTTTTAAATAACTCAATAAC
77387082 TTAAATAAAAAACTTT
1 TTAAATAAAAAACTTT
77387098 CGAATAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
28 11 0.29
30 2 0.05
31 16 0.42
32 9 0.24
ACGTcount: A:0.55, C:0.09, G:0.03, T:0.33
Consensus pattern (32 bp):
TTAAATAAAAAACTTTTAAATAACTCAATAAC
Found at i:77387118 original size:31 final size:31
Alignment explanation
Indices: 77387047--77387118 Score: 101
Period size: 32 Copynumber: 2.3 Consensus size: 31
77387037 AATAACTCAA
* *
77387047 TAACTTAAATAAAAACTTTTAAATAATTTGG
1 TAACTTAAATAAAAACTTTCAAATAATTTAG
*
77387078 TAACTTAAATAAAAAACTTTCGAATAATTTAG
1 TAACTTAAAT-AAAAACTTTCAAATAATTTAG
77387110 TAAC-TAAAT
1 TAACTTAAAT
77387119 TGTAACTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
31 15 0.41
32 22 0.59
ACGTcount: A:0.50, C:0.08, G:0.06, T:0.36
Consensus pattern (31 bp):
TAACTTAAATAAAAACTTTCAAATAATTTAG
Found at i:77389016 original size:122 final size:122
Alignment explanation
Indices: 77388776--77389017 Score: 405
Period size: 122 Copynumber: 2.0 Consensus size: 122
77388766 GAACTCCTCT
*
77388776 TGCCCTACAGTAGTTGATACATCAAGGAAGTTTTACATGGAATAAAAGAACAAAAAAAATGGATT
1 TGCCCTACAATAGTTGATACATCAAGGAAGTTTTACATGGAATAAAAGAACAAAAAAAATGGATT
77388841 CATGGAGGTTTAATCAGTAAATCACAACAATCCCAACCACAAATTTTCCTTTTTTCC
66 CATGGAGGTTTAATCAGTAAATCACAACAATCCCAACCACAAATTTTCCTTTTTTCC
**
77388898 TGCCCTACAATAGTTGATATGTCAAGGAAGTTTTACATGGAATAAAAGAACAAAAAAAATGGATT
1 TGCCCTACAATAGTTGATACATCAAGGAAGTTTTACATGGAATAAAAGAACAAAAAAAATGGATT
* *** *
77388963 CATGGAGGTTTAATCAGTAAATCACAACAGTCCTGGCTAC-AATTTTCCTTTTTTC
66 CATGGAGGTTTAATCAGTAAATCACAACAATCCCAACCACAAATTTTCCTTTTTTC
77389018 TATGCATTTC
Statistics
Matches: 112, Mismatches: 8, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
121 15 0.13
122 97 0.87
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.29
Consensus pattern (122 bp):
TGCCCTACAATAGTTGATACATCAAGGAAGTTTTACATGGAATAAAAGAACAAAAAAAATGGATT
CATGGAGGTTTAATCAGTAAATCACAACAATCCCAACCACAAATTTTCCTTTTTTCC
Found at i:77390444 original size:30 final size:30
Alignment explanation
Indices: 77390408--77390467 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
77390398 TTGGAAGAAG
77390408 TAAATTTTCATGCACAAAATTAAAACTCAC
1 TAAATTTTCATGCACAAAATTAAAACTCAC
77390438 TAAATTTTCATGCACAAAATTAAAACTCAC
1 TAAATTTTCATGCACAAAATTAAAACTCAC
77390468 CGTGTATTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.47, C:0.20, G:0.03, T:0.30
Consensus pattern (30 bp):
TAAATTTTCATGCACAAAATTAAAACTCAC
Found at i:77392279 original size:48 final size:48
Alignment explanation
Indices: 77392206--77392375 Score: 232
Period size: 48 Copynumber: 3.5 Consensus size: 48
77392196 CATTAGGGTT
77392206 ATATGAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCG
1 ATATGAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCG
* * * *
77392254 ATATGAGATCCTATGTAAGATCATGTCCAGGACATGGCATTGGCATTG
1 ATATGAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCG
* * * *
77392302 ATATGAGATCCCATGTAAGACCATATCTGGGATATGACATTGGCATCG
1 ATATGAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCG
* ** *
77392350 ATATGTGATTTCGTGTAAGACCATGT
1 ATATGAGATCCCATGTAAGACCATGT
77392376 TTGAGACATG
Statistics
Matches: 105, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 105 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (48 bp):
ATATGAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCG
Found at i:77399794 original size:16 final size:17
Alignment explanation
Indices: 77399773--77399812 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
77399763 AATCAATATG
77399773 AACATAAACCATAA-TC-
1 AACATAAACCA-AATTCA
77399789 AACAT-AACCAAATTCA
1 AACATAAACCAAATTCA
77399805 AACATAAA
1 AACATAAA
77399813 AGTTAAGCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 2 0.10
15 7 0.33
16 10 0.48
17 2 0.10
ACGTcount: A:0.60, C:0.23, G:0.00, T:0.17
Consensus pattern (17 bp):
AACATAAACCAAATTCA
Found at i:77408393 original size:14 final size:16
Alignment explanation
Indices: 77408374--77408405 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
77408364 CGATGTTCTT
77408374 TTTGCATC-CAT-GCA
1 TTTGCATCTCATAGCA
77408388 TTTGCATCTCATAGCA
1 TTTGCATCTCATAGCA
77408404 TT
1 TT
77408406 ACATCGCATC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 3 0.19
16 5 0.31
ACGTcount: A:0.22, C:0.25, G:0.12, T:0.41
Consensus pattern (16 bp):
TTTGCATCTCATAGCA
Found at i:77416790 original size:220 final size:220
Alignment explanation
Indices: 77416408--77417418 Score: 1567
Period size: 220 Copynumber: 4.6 Consensus size: 220
77416398 TAGGCTAAAA
* * *
77416408 CATAGCAGATCTGGCCTTCAGATGTTTACACTGAAGCAAATCCAAGATGAGTTGGCATCTCTGTA
1 CATAGCAGATCTGACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
* *
77416473 TTGTCAGAGGACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGATGGAGAGCAGATCGAAG
66 TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
77416538 ACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGCATCTTT
131 ACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGCATCTTT
* *
77416603 GTGTTTAGAAGGAACAAATTGAAGG
196 GTGTTTACAAGGAACAAATCGAAGG
* * * *
77416628 CATAGCAGATCTGACCTTCAAATGTTTACACTGAAGCAGATCTAAGATGATTTGACATCTCTATA
1 CATAGCAGATCTGACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
*
77416693 TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATTGAAG
66 TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
*
77416758 ACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGAATCTTT
131 ACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGCATCTTT
77416823 GTGTTTACAAGGAACAAATCGAAGG
196 GTGTTTACAAGGAACAAATCGAAGG
77416848 CATAGCAGATCTGACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
1 CATAGCAGATCTGACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
77416913 TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
66 TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
* *
77416978 ACATAGTAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCATCTTT
131 ACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGCATCTTT
*
77417043 GCGTTTACAAGGAACAAATCGAAGG
196 GTGTTTACAAGGAACAAATCGAAGG
**
77417068 CATAGCAGATCTGACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
1 CATAGCAGATCTGACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
*
77417133 TTGTCAGAGAACAAATCGAAGAAACATATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
66 TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
* *
77417198 ACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGCATCCTC
131 ACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGCATCTTT
* * *
77417263 GTGTTTACAAGGAGCAAATCAAAGA
196 GTGTTTACAAGGAACAAATCGAAGG
* * * * **** * * * * *
77417288 CATAGCAGATTTGGCTTTCACG-CGTTTGTGTTGAAGCAAATCTAAGATAATTTGGCGTCTCTAT
1 CATAGCAGATCTGACCTTCA-GATGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGT
** * ** ** * * *
77417352 ATTGTCAGAGAGTAGATCGAAGATTGCAGATTTGGCATCTCTGTATT-GTCAGAGAGCAGATCAA
65 ATTGTCAGAGAACAAATCGAAGA-AACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGA
77417416 AGA
129 AGA
77417419 TATCAACATG
Statistics
Matches: 734, Mismatches: 55, Indels: 4
0.93 0.07 0.01
Matches are distributed among these distances:
220 715 0.97
221 19 0.03
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (220 bp):
CATAGCAGATCTGACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
ACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGCATCTTT
GTGTTTACAAGGAACAAATCGAAGG
Found at i:77416925 original size:87 final size:89
Alignment explanation
Indices: 77416754--77416934 Score: 235
Period size: 87 Copynumber: 2.1 Consensus size: 89
77416744 AGAGCAGATT
** *
77416754 GAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGAAT
1 GAAGACATAGCAGATCTAACCTTCAGATGTTTACACATCAAAGCAGATCCAAGATGATTTGGAAT
* *
77416819 CTTTGTGTTTACAAGGAACAAATC
66 CTCTGTATTTACAAGGAACAAATC
* * * *
77416843 GAAGGCATAGCAGATCTGACCTTCAGATGTTTACAC-T-GAAGCAGATCCAAGATGATTTGGCAT
1 GAAGACATAGCAGATCTAACCTTCAGATGTTTACACATCAAAGCAGATCCAAGATGATTTGGAAT
77416906 CTCTGTATTGT-C-AGAGAACAAATC
66 CTCTGTATT-TACAAG-GAACAAATC
77416930 GAAGA
1 GAAGA
77416935 AACAGATTTG
Statistics
Matches: 80, Mismatches: 10, Indels: 6
0.83 0.10 0.06
Matches are distributed among these distances:
86 2 0.03
87 45 0.56
88 2 0.03
89 31 0.39
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (89 bp):
GAAGACATAGCAGATCTAACCTTCAGATGTTTACACATCAAAGCAGATCCAAGATGATTTGGAAT
CTCTGTATTTACAAGGAACAAATC
Found at i:77419119 original size:26 final size:26
Alignment explanation
Indices: 77419083--77419138 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
77419073 TAGTAAATGC
77419083 TATTTTGAAATTAT-TATTAAGTATTA
1 TATTTTGAAATT-TGTATTAAGTATTA
* **
77419109 TATTTTTAAATTTGTATTATTTATTA
1 TATTTTGAAATTTGTATTAAGTATTA
77419135 TATT
1 TATT
77419139 ATTATTATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (26 bp):
TATTTTGAAATTTGTATTAAGTATTA
Found at i:77421408 original size:16 final size:15
Alignment explanation
Indices: 77421346--77421413 Score: 57
Period size: 16 Copynumber: 4.3 Consensus size: 15
77421336 AAATTATTAC
*
77421346 AAACAAGAGTTGTTCT
1 AAACAA-AGTTATTCT
*
77421362 AAACAAAATTATTCTT
1 AAACAAAGTTATTC-T
77421378 GAAACACAA-TTATTCT
1 -AAACA-AAGTTATTCT
*
77421394 AAACAAGAGTTATTCC
1 AAACAA-AGTTATTCT
77421410 AAAC
1 AAAC
77421414 TTTAGATGTT
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
14 1 0.02
15 12 0.27
16 18 0.41
17 11 0.25
18 2 0.05
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.29
Consensus pattern (15 bp):
AAACAAAGTTATTCT
Found at i:77424520 original size:45 final size:46
Alignment explanation
Indices: 77424412--77424521 Score: 132
Period size: 46 Copynumber: 2.4 Consensus size: 46
77424402 CGAATCAAAC
* *
77424412 AAATAAGACCATAGTTGAAAGAAACTATGACAACATGACGAAAAAT
1 AAATAAGACCATGGTTGAAAGAAACTATGACAACAAGACGAAAAAT
* ** * ** *
77424458 GAATAAGACCATGGTTGAAAGGCACTATGACATCAAGTTG-AGAAT
1 AAATAAGACCATGGTTGAAAGAAACTATGACAACAAGACGAAAAAT
77424503 AAATAAGACCATGGTTGAA
1 AAATAAGACCATGGTTGAA
77424522 TGACACCATG
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
45 22 0.41
46 32 0.59
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (46 bp):
AAATAAGACCATGGTTGAAAGAAACTATGACAACAAGACGAAAAAT
Found at i:77428937 original size:21 final size:20
Alignment explanation
Indices: 77428913--77428952 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
77428903 ATGTTCAAGC
77428913 TCCACACGAGCGTGTTGCCCA
1 TCCACACGAGCGTG-TGCCCA
* *
77428934 TCCACATGGGCGTGTGCCC
1 TCCACACGAGCGTGTGCCC
77428953 TGTGTCAAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.15, C:0.38, G:0.28, T:0.20
Consensus pattern (20 bp):
TCCACACGAGCGTGTGCCCA
Found at i:77430979 original size:53 final size:54
Alignment explanation
Indices: 77430910--77431116 Score: 191
Period size: 53 Copynumber: 3.8 Consensus size: 54
77430900 TTCCTTTTTA
* * * *
77430910 AACTTACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
77430963 AACTCACCATTGCCATGCCTTGACATGTTCTTGCATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * * * *
77431017 TAGTTTATCAATGGCATGTCTTGACATGGTCTTACATGATTTACTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
77431072 AACTTACTAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
77431117 AAACCCTAAT
Statistics
Matches: 117, Mismatches: 35, Indels: 3
0.75 0.23 0.02
Matches are distributed among these distances:
53 44 0.38
54 35 0.30
55 38 0.32
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.39
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:77435441 original size:56 final size:56
Alignment explanation
Indices: 77435355--77435466 Score: 197
Period size: 56 Copynumber: 2.0 Consensus size: 56
77435345 TAAGAGTGCC
* *
77435355 TATATGCCAAAGCTGGACTAGTTGATAGTATGTTGACTCTCCAACCGTCTTCCAAT
1 TATATACCAAAGCTGGACTAGCTGATAGTATGTTGACTCTCCAACCGTCTTCCAAT
*
77435411 TATATACCAAAGCTGGACTAGCTGATAGTATGTTGACTCTCCAACTGTCTTCCAAT
1 TATATACCAAAGCTGGACTAGCTGATAGTATGTTGACTCTCCAACCGTCTTCCAAT
77435467 CTTTATGAGT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (56 bp):
TATATACCAAAGCTGGACTAGCTGATAGTATGTTGACTCTCCAACCGTCTTCCAAT
Found at i:77446449 original size:11 final size:10
Alignment explanation
Indices: 77446432--77446465 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 10
77446422 GGGTAACAGC
77446432 AAAAATAAAA
1 AAAAATAAAA
77446442 AGAAAATAAAA
1 A-AAAATAAAA
77446453 TAAAAATAAAA
1 -AAAAATAAAA
77446464 AA
1 AA
77446466 GAAGAATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 3 0.14
11 18 0.82
12 1 0.05
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (10 bp):
AAAAATAAAA
Found at i:77448186 original size:45 final size:44
Alignment explanation
Indices: 77448134--77448673 Score: 306
Period size: 44 Copynumber: 11.7 Consensus size: 44
77448124 TTGTAGCTTG
* * *
77448134 ATCTGCTCCATTGCAACTTCAAGGAGATAAGATCTGCTATCTTCA
1 ATCTGCCCCACTGCAACTTCAGGGAGATAAGATCTG-TATCTTCA
* * * * *
77448179 GTCTGCTCCACTACAACTTCAGGGAGATAAGA-CTTTTAACTTCA
1 ATCTGCCCCACTGCAACTTCAGGGAGATAAGATC-TGTATCTTCA
* * *
77448223 A-CTTGCCCCACTGCAACTTCAGGGAGATAAAGTTTGTGATTTGTAGCTTCG
1 ATC-TGCCCCACTGCAACTTCAGGGAGAT-AA------GATCTGTATCTTCA
* *
77448274 ATCTGCCCCATTGCAACTTCAGGGAGATCAA-ATTTGCTATCTTCA
1 ATCTGCCCCACTGCAACTTCAGGGAGAT-AAGATCTG-TATCTTCA
* * * * * * * *
77448319 ATTTGCTCCACTGTAACTTTAAGAAGATAAGA-CTTGTAACTT-T
1 ATCTGCCCCACTGCAACTTCAGGGAGATAAGATC-TGTATCTTCA
* * * *
77448362 ATCCTGCTCGACTGCAACTTCAGGGAGATAAGGTTTGTGATTTGTAGCTTCA
1 AT-CTGCCCCACTGCAACTTCAGGGAGATAA-------GATCTGTATCTTCA
*
77448414 ATTTGCCCCACTGCAACTTCAGGGAGATAAGAT-TCGCTATCTTCA
1 ATCTGCCCCACTGCAACTTCAGGGAGATAAGATCT-G-TATCTTCA
* * *
77448459 GTCTGCCCCATTGCAACTTCAGGGAGATAAGA-CTTGTAACTTCA
1 ATCTGCCCCACTGCAACTTCAGGGAGATAAGATC-TGTATCTTCA
* * * * *
77448503 ACCTGCTCCACTACAACTTTAGGGAGATAAGATTTGTGATTTGTAGCTTCA
1 ATCTGCCCCACTGCAACTTCAGGGAGATAAGATCTGT-A----T--CTTCA
* * *
77448554 ACCTGCCCCATTGCAACTTCAGGGAGATAAGAT-TCGCTACCTTCA
1 ATCTGCCCCACTGCAACTTCAGGGAGATAAGATCT-G-TATCTTCA
* * *
77448599 GTTTGCCCCACTGCAACTTCAGGGAGATAAGA-CTTGTAACTTCA
1 ATCTGCCCCACTGCAACTTCAGGGAGATAAGATC-TGTATCTTCA
* ** * *
77448643 ACCTGCTACACTGCTACTTCGGGGAGATAAG
1 ATCTGCCCCACTGCAACTTCAGGGAGATAAG
77448674 GTTTGCTATG
Statistics
Matches: 386, Mismatches: 69, Indels: 81
0.72 0.13 0.15
Matches are distributed among these distances:
43 4 0.01
44 136 0.35
45 133 0.34
46 2 0.01
50 1 0.00
51 106 0.27
52 4 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (44 bp):
ATCTGCCCCACTGCAACTTCAGGGAGATAAGATCTGTATCTTCA
Found at i:77448312 original size:140 final size:140
Alignment explanation
Indices: 77448124--77448678 Score: 758
Period size: 140 Copynumber: 4.0 Consensus size: 140
77448114 TCTTCTGCAA
* * * *
77448124 TTGTAGCTT-GATCTGCTCCATTGCAACTTCAAGGAGATAAGA-TCTGCTATCTTCAGTCTGCTC
1 TTGTAGCTTCAATCTGCCCCATTGCAACTTCAGGGAGATAAGATTC-GCTATCTTCAGTCTGCCC
* * * *
77448187 CACTACAACTTCAGGGAGATAAGACTTTTAACTTCAACTTGCCCCACTGCAACTTCAGGGAGATA
65 CACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATA
77448252 AAGTTTGTGAT
130 AAGTTTGTGAT
* * * * *
77448263 TTGTAGCTTCGATCTGCCCCATTGCAACTTCAGGGAGATCAA-ATTTGCTATCTTCAATTTGCTC
1 TTGTAGCTTCAATCTGCCCCATTGCAACTTCAGGGAGAT-AAGATTCGCTATCTTCAGTCTGCCC
* * * * * * *
77448327 CACTGTAACTTTAAGAAGATAAGACTTGTAACTTTATCCTGCTCGACTGCAACTTCAGGGAGATA
65 CACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATA
*
77448392 AGGTTTGTGAT
130 AAGTTTGTGAT
* *
77448403 TTGTAGCTTCAATTTGCCCCACTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAGTCTGCCCC
1 TTGTAGCTTCAATCTGCCCCATTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAGTCTGCCCC
* * *
77448468 ATTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTACAACTTTAGGGAGAT-A
66 ACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAA
77448532 AGATTTGTGAT
131 AG-TTTGTGAT
* * *
77448543 TTGTAGCTTCAACCTGCCCCATTGCAACTTCAGGGAGATAAGATTCGCTACCTTCAGTTTGCCCC
1 TTGTAGCTTCAATCTGCCCCATTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAGTCTGCCCC
* * *
77448608 ACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTACACTGCTACTTCGGGGAGATAA
66 ACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAA
*
77448673 GGTTTG
131 AGTTTG
77448679 CTATGATCTG
Statistics
Matches: 363, Mismatches: 47, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
139 13 0.04
140 345 0.95
141 5 0.01
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (140 bp):
TTGTAGCTTCAATCTGCCCCATTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAGTCTGCCCC
ACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAA
AGTTTGTGAT
Found at i:77448405 original size:96 final size:96
Alignment explanation
Indices: 77448305--77448489 Score: 223
Period size: 96 Copynumber: 1.9 Consensus size: 96
77448295 GGGAGATCAA
* * * * *
77448305 ATTTGCTATCTTCAATTTGCTCCACTGTAACTTTAAGAAGATAAGACTT-G-TAACTTTA-TCCT
1 ATTTG-TAGCTTCAATTTGCCCCACTGCAACTTCAAGAAGATAAGA-TTCGCTAACTTCAGT-CT
* *
77448367 GCTCGACTGCAACTTCAGGGAGATAAGGTTTGTG
63 GCCCCACTGCAACTTCAGGGAGATAAGGTTTGTG
* * *
77448401 ATTTGTAGCTTCAATTTGCCCCACTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAGTCTGCC
1 ATTTGTAGCTTCAATTTGCCCCACTGCAACTTCAAGAAGATAAGATTCGCTAACTTCAGTCTGCC
*
77448466 CCATTGCAACTTCAGGGAGATAAG
66 CCACTGCAACTTCAGGGAGATAAG
77448490 ACTTGTAACT
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
94 2 0.03
95 35 0.47
96 37 0.49
97 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.32
Consensus pattern (96 bp):
ATTTGTAGCTTCAATTTGCCCCACTGCAACTTCAAGAAGATAAGATTCGCTAACTTCAGTCTGCC
CCACTGCAACTTCAGGGAGATAAGGTTTGTG
Found at i:77448432 original size:51 final size:44
Alignment explanation
Indices: 77448400--77448678 Score: 252
Period size: 45 Copynumber: 6.1 Consensus size: 44
77448390 TAAGGTTTGT
*
77448400 GATTTGTAGCTTCAATTTGCCCCACTGCAACTTCAGGGAGATAA
1 GATTTGTAGCTTCAATCTGCCCCACTGCAACTTCAGGGAGATAA
* * * *
77448444 GATTCGCTATCTTCAGTCTGCCCCATTGCAACTTCAGGGAGATAA
1 GATTTG-TAGCTTCAATCTGCCCCACTGCAACTTCAGGGAGATAA
* * * * * *
77448489 GACTTGTAACTTCAACCTGCTCCACTACAACTTTAGGGAGATAAGA
1 GATTTGTAGCTTCAATCTGCCCCACTGCAACTTCAGGGAGAT-A-A
* *
77448535 TTTGTGATTTGTAGCTTCAACCTGCCCCATTGCAACTTCAGGGAGATAA
1 -----GATTTGTAGCTTCAATCTGCCCCACTGCAACTTCAGGGAGATAA
* * * *
77448584 GATTCGCTACCTTCAGTTTGCCCCACTGCAACTTCAGGGAGATAA
1 GATTTG-TAGCTTCAATCTGCCCCACTGCAACTTCAGGGAGATAA
* * * ** * *
77448629 GACTTGTAACTTCAACCTGCTACACTGCTACTTCGGGGAGATAA
1 GATTTGTAGCTTCAATCTGCCCCACTGCAACTTCAGGGAGATAA
*
77448673 GGTTTG
1 GATTTG
77448679 CTATGATCTG
Statistics
Matches: 188, Mismatches: 38, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
44 73 0.39
45 76 0.40
46 1 0.01
49 1 0.01
50 1 0.01
51 36 0.19
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (44 bp):
GATTTGTAGCTTCAATCTGCCCCACTGCAACTTCAGGGAGATAA
Found at i:77448672 original size:89 final size:88
Alignment explanation
Indices: 77448400--77448678 Score: 272
Period size: 89 Copynumber: 3.1 Consensus size: 88
77448390 TAAGGTTTGT
* * **
77448400 GATTTGTAGCTTCAATTTGCCCCACTGCAACTTCAGGGAGATAAGA-TTCGCTATCTTCAGTCTG
1 GATTTGTAACTTCAATTTGCCCCACTGCAACTTCAGGGAGATAAGACTT-G-TAACTTCAACCTG
*
77448464 CCCCATTGCAACTTCAGGGAGATAA
64 CCCCACTGCAACTTCAGGGAGATAA
* ** * * * *
77448489 GACTTGTAACTTCAACCTGCTCCACTACAACTTTAGGGAGATAAGATTTGTGATTTGTAGCTTCA
1 GATTTGTAACTTCAATTTGCCCCACTGCAACTTCAGGGAGATAAGACTTGT-A-----A-CTTCA
*
77448554 ACCTGCCCCATTGCAACTTCAGGGAGATAA
59 ACCTGCCCCACTGCAACTTCAGGGAGATAA
* * *
77448584 GATTCGCTACCTTCAGTTTGCCCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGC
1 GATTTG-TAACTTCAATTTGCCCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGC
** * *
77448649 TACACTGCTACTTCGGGGAGATAA
65 CCCACTGCAACTTCAGGGAGATAA
*
77448673 GGTTTG
1 GATTTG
77448679 CTATGATCTG
Statistics
Matches: 154, Mismatches: 27, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
88 1 0.01
89 75 0.49
90 3 0.02
95 38 0.25
96 37 0.24
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (88 bp):
GATTTGTAACTTCAATTTGCCCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCC
CCACTGCAACTTCAGGGAGATAA
Found at i:77449584 original size:49 final size:48
Alignment explanation
Indices: 77449531--77449672 Score: 106
Period size: 44 Copynumber: 3.1 Consensus size: 48
77449521 TGGCTTTGAG
77449531 CCGCTCCAATATCATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACT
1 CCGCTCCAATA-CATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACT
* * * ** * * *
77449580 CCGCT-GAA-AC--TTCAAGGA-AATACGAACTGTGGCTTCGA---GCT
1 CCGCTCCAATACATTTCAGGGAGAAGA-GATTTGTAGCCTCGATCTACT
*
77449621 --GCTCCAATACCATTTTAGGGAGAAGAGATTTGTAGCCTCGATCTACT
1 CCGCTCCAATA-CATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACT
77449668 CCGCT
1 CCGCT
77449673 GGAACTTCAA
Statistics
Matches: 64, Mismatches: 17, Indels: 24
0.61 0.16 0.23
Matches are distributed among these distances:
39 3 0.05
40 2 0.03
41 3 0.05
42 1 0.02
43 3 0.05
44 35 0.55
45 3 0.05
46 1 0.02
47 3 0.05
48 2 0.03
49 8 0.12
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (48 bp):
CCGCTCCAATACATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACT
Found at i:77449871 original size:88 final size:88
Alignment explanation
Indices: 77448751--77449865 Score: 1593
Period size: 88 Copynumber: 12.7 Consensus size: 88
77448741 TTCCATTGTA
* * *
77448751 ATTTCAGGAAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAATTG
1 ATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAACTG
* *
77448816 AGGCTTCGAGTCC-TTCCAATGCC
66 TGGCTTCGAG-CCGCTCCAATGCC
* *
77448839 ATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGTTGGAACTTCAAGGAGATACAAACTG
1 ATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAACTG
*
77448904 TGGCTTCGAGCCGCTCCAATGCT
66 TGGCTTCGAGCCGCTCCAATGCC
* *
77448927 ATTTCAGGGAGAAGAGATTTGTAGCCTCAATCTTCTCCGCTGGAACTTCAAGGAGATACGAACTG
1 ATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAACTG
* *
77448992 TGGCTTCGAGCTGCTCCAATGTC
66 TGGCTTCGAGCCGCTCCAATGCC
* *
77449015 ATTTCAGGGAGAAGAGATTTGTAACCTAGATCTACTCCGCTGGAACTTCAAGGAGATACGAACTG
1 ATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAACTG
77449080 TGGCTTCGAGCCGCTCCAATGCC
66 TGGCTTCGAGCCGCTCCAATGCC
* * * *
77449103 ATTTCAGGGAAAAGAGATTTGTAGCCTAGATCTACTCAAGCTGGAACTTCAAGGAGATACGAAAT
1 ATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTC-CGCTGGAACTTCAAGGAGATACGAACT
*
77449168 GTGGCTTCGAGCCACTCCAATGCC
65 GTGGCTTCGAGCCGCTCCAATGCC
* * * *
77449192 ATTTCCGGGAGAAGAGATTTGTAACCTTGATCTACTCCGCTGGAACTTCAAGGAGATACGAACTA
1 ATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAACTG
*
77449257 TGGCTTCAAGCCGCTCCAATGCC
66 TGGCTTCGAGCCGCTCCAATGCC
* * * * * * *
77449280 ATTTTAGGGAGAAGAGATTTTTAGCCTCGATCTTCTCCGTTGGAACTTTAAGGAGATATGAATTG
1 ATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAACTG
* **
77449345 TGGCTTCGAACTACTCCAATGCC
66 TGGCTTCGAGCCGCTCCAATGCC
* * *
77449368 ATTTCAGGGAGAAGAGATTTGTGGCCTCGATCTACTCTGCTGGAACTTCAAGGAGATACAAACTG
1 ATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAACTG
77449433 TGGCTTCGAGCCGCTCCAATGCC
66 TGGCTTCGAGCCGCTCCAATGCC
* * *
77449456 ATTTCAGGGAGAAGAGATTTGTAGCCTCAATCTACTCCGTTGGATCTTCAAGGAGATACGAACTG
1 ATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAACTG
* **
77449521 TGGCTTTGAGCCGCTCCAATATC
66 TGGCTTCGAGCCGCTCCAATGCC
* *
77449544 ATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGAAACTTCAAGGAAATACGAACTG
1 ATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAACTG
* *
77449609 TGGCTTCGAGCTGCTCCAATACC
66 TGGCTTCGAGCCGCTCCAATGCC
* *
77449632 ATTTTAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGGAACTTCAAGGAGATAGGAACTG
1 ATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAACTG
* * * *
77449697 TGGCTTCAAGCAGCTCTAGTGCC
66 TGGCTTCGAGCCGCTCCAATGCC
* * * * *
77449720 ATTTCAGGGAGAAAAGATTTGTAGCTTCGATCTACTCCACTGAAACTTCAAGGAGATACGAATTG
1 ATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAACTG
* * * *
77449785 TAGCTTCGAGCCGCTCTAGTGCT
66 TGGCTTCGAGCCGCTCCAATGCC
* * * * * *
77449808 ATTTCAAGGAGAAGAAATTTGTAGCTTCGATCTACTCCGCTGAAACTTTAAGAAGATA
1 ATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGGAACTTCAAGGAGATA
77449866 AGAATTATTG
Statistics
Matches: 919, Mismatches: 106, Indels: 4
0.89 0.10 0.00
Matches are distributed among these distances:
87 2 0.00
88 836 0.91
89 81 0.09
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.27
Consensus pattern (88 bp):
ATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAACTG
TGGCTTCGAGCCGCTCCAATGCC
Found at i:77450009 original size:44 final size:44
Alignment explanation
Indices: 77449924--77450031 Score: 103
Period size: 44 Copynumber: 2.5 Consensus size: 44
77449914 GGTGACTTAA
* ***
77449924 ATCTACTCCACTACTACTTAGGGAGACAAGATTTGTTATCTTTG
1 ATCTACTCCACTACTACTTAGGGAGACAAGATCTACAATCTTTG
* * *
77449968 ATCTGCTCCACTACT-GTCTAGGGAGACAAGATCTACAATC-TTC
1 ATCTACTCCACTACTACT-TAGGGAGACAAGATCTACAATCTTTG
* *
77450011 AGCCTACTCCACTACTGCTTA
1 A-TCTACTCCACTACTACTTA
77450032 AGGTGATAGG
Statistics
Matches: 51, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
43 4 0.08
44 46 0.90
45 1 0.02
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (44 bp):
ATCTACTCCACTACTACTTAGGGAGACAAGATCTACAATCTTTG
Found at i:77452124 original size:28 final size:28
Alignment explanation
Indices: 77452067--77452246 Score: 294
Period size: 28 Copynumber: 6.5 Consensus size: 28
77452057 TAAATTGTGC
*
77452067 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
77452094 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
77452122 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
77452150 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
77452177 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
77452205 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
77452232 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
77452247 GACTTAATAT
Statistics
Matches: 147, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
27 66 0.45
28 81 0.55
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:77452131 original size:55 final size:55
Alignment explanation
Indices: 77452067--77452246 Score: 299
Period size: 55 Copynumber: 3.3 Consensus size: 55
77452057 TAAATTGTGC
*
77452067 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGT
77452122 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
* * *
77452177 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
77452232 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
77452247 GACTTAATAT
Statistics
Matches: 119, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
55 92 0.77
56 27 0.23
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
Found at i:77452206 original size:83 final size:82
Alignment explanation
Indices: 77452067--77452246 Score: 306
Period size: 83 Copynumber: 2.2 Consensus size: 82
77452057 TAAATTGTGC
77452067 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
77452132 GTGCGAGTTTGACTATGT
66 GTGCGAG-TTGACTATAT
* *
77452150 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
77452215 GTGCGAGTTGATTATAT
66 GTGCGAGTTGACTATAT
*
77452232 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
77452247 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
82 22 0.24
83 70 0.76
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
GTGCGAGTTGACTATAT
Found at i:77464681 original size:27 final size:28
Alignment explanation
Indices: 77464640--77464698 Score: 86
Period size: 27 Copynumber: 2.1 Consensus size: 28
77464630 GTTTGCTAGT
*
77464640 TGCGAGTTTGATTATGTAGCACT-ATGTG
1 TGCGAGTTTGATTATATAGCACTGA-GTG
77464668 TGCGAG-TTGATTATATAGCACTGAGTG
1 TGCGAGTTTGATTATATAGCACTGAGTG
77464695 TGCG
1 TGCG
77464699 GACTTAATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 22 0.76
28 7 0.24
ACGTcount: A:0.22, C:0.12, G:0.31, T:0.36
Consensus pattern (28 bp):
TGCGAGTTTGATTATATAGCACTGAGTG
Found at i:77474250 original size:27 final size:27
Alignment explanation
Indices: 77474220--77474397 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
77474210 ATATTGAGCC
* * * *
77474220 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
77474247 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
77474274 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
77474302 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
77474329 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
77474356 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
77474383 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77474398 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:77474359 original size:82 final size:81
Alignment explanation
Indices: 77474241--77474396 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
77474231 TGCTATATAA
* *
77474241 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
77474306 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
77474323 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
77474387 CACTTAGTGC
65 CACTTAGTGC
77474397 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:77479661 original size:3 final size:3
Alignment explanation
Indices: 77479655--77479695 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
77479645 TTTAAAAAAG
77479655 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
77479696 GGAGGATTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:77480612 original size:22 final size:21
Alignment explanation
Indices: 77480584--77480669 Score: 89
Period size: 17 Copynumber: 4.4 Consensus size: 21
77480574 GTTTTGATTG
77480584 CTACTGTTTAGTTCATTGTTCA
1 CTACTGTTT-GTTCATTGTTCA
77480606 CTAC----TGTTCATTGTTCA
1 CTACTGTTTGTTCATTGTTCA
*
77480623 CCACTGT----TCATTGTTCA
1 CTACTGTTTGTTCATTGTTCA
77480640 CTACTGTTTAGTTCATTGTTCA
1 CTACTGTTT-GTTCATTGTTCA
77480662 CTACTGTT
1 CTACTGTT
77480670 CACTTCTTCT
Statistics
Matches: 54, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
17 31 0.57
18 1 0.02
22 22 0.41
ACGTcount: A:0.17, C:0.22, G:0.13, T:0.48
Consensus pattern (21 bp):
CTACTGTTTGTTCATTGTTCA
Found at i:77480615 original size:10 final size:10
Alignment explanation
Indices: 77480600--77480673 Score: 52
Period size: 10 Copynumber: 7.8 Consensus size: 10
77480590 TTTAGTTCAT
77480600 TGTTCACTAC
1 TGTTCACTAC
77480610 TGTTCA-T--
1 TGTTCACTAC
*
77480617 TGTTCACCAC
1 TGTTCACTAC
77480627 TGTTCA-T--
1 TGTTCACTAC
77480634 TGTTCACTAC
1 TGTTCACTAC
* * *
77480644 TGTTTAGTTCAT
1 TGTTCA-CT-AC
77480656 TGTTCACTAC
1 TGTTCACTAC
77480666 TGTTCACT
1 TGTTCACT
77480674 TCTTCTTCTT
Statistics
Matches: 48, Mismatches: 8, Indels: 16
0.67 0.11 0.22
Matches are distributed among these distances:
7 12 0.25
8 1 0.02
9 1 0.02
10 26 0.54
11 2 0.04
12 6 0.12
ACGTcount: A:0.18, C:0.24, G:0.12, T:0.46
Consensus pattern (10 bp):
TGTTCACTAC
Found at i:77480616 original size:17 final size:17
Alignment explanation
Indices: 77480594--77480671 Score: 102
Period size: 17 Copynumber: 4.3 Consensus size: 17
77480584 CTACTGTTTA
77480594 GTTCATTGTTCACTACT
1 GTTCATTGTTCACTACT
*
77480611 GTTCATTGTTCACCACT
1 GTTCATTGTTCACTACT
77480628 GTTCATTGTTCACTACTGTTT
1 GTTCATTGTTCACTAC----T
77480649 AGTTCATTGTTCACTACT
1 -GTTCATTGTTCACTACT
77480667 GTTCA
1 GTTCA
77480672 CTTCTTCTTC
Statistics
Matches: 54, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
17 36 0.67
18 1 0.02
21 1 0.02
22 16 0.30
ACGTcount: A:0.18, C:0.23, G:0.13, T:0.46
Consensus pattern (17 bp):
GTTCATTGTTCACTACT
Found at i:77481226 original size:13 final size:13
Alignment explanation
Indices: 77481210--77481238 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
77481200 TACAATTTTT
77481210 ATAAAATATAGAA
1 ATAAAATATAGAA
77481223 ATAAAATATAGAA
1 ATAAAATATAGAA
77481236 ATA
1 ATA
77481239 TTTTTCATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (13 bp):
ATAAAATATAGAA
Found at i:77484212 original size:11 final size:12
Alignment explanation
Indices: 77484188--77484216 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
77484178 TCCGACGATC
77484188 TTTCTTTCTTTT
1 TTTCTTTCTTTT
77484200 TTTCTTT-TTTT
1 TTTCTTTCTTTT
77484211 TTTCTT
1 TTTCTT
77484217 ATCAATCCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 10 0.59
12 7 0.41
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (12 bp):
TTTCTTTCTTTT
Found at i:77484404 original size:17 final size:17
Alignment explanation
Indices: 77484384--77484417 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
77484374 TTACAAATAT
77484384 TAAATAATAAAAT-TAAA
1 TAAAT-ATAAAATATAAA
77484401 TAAATATAAAATATAAA
1 TAAATATAAAATATAAA
77484418 ATATTCATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAATATAAAATATAAA
Found at i:77484434 original size:18 final size:19
Alignment explanation
Indices: 77484408--77484443 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
77484398 AAATAAATAT
77484408 AAAATATAAAATATTCATC
1 AAAATATAAAATATTCATC
*
77484427 AAAA-ATAAAATTTTCAT
1 AAAATATAAAATATTCAT
77484444 GAAATGGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAATATAAAATATTCATC
Found at i:77485803 original size:17 final size:15
Alignment explanation
Indices: 77485776--77485818 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 15
77485766 ATAAAGGGTA
77485776 TAAAGATTATTTAAAATT
1 TAAA-ATTATTT--AATT
77485794 TAAAATTATTTAATT
1 TAAAATTATTTAATT
77485809 TATAAATTAT
1 TA-AAATTAT
77485819 CCCTCCCCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 6 0.25
16 7 0.29
17 7 0.29
18 4 0.17
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (15 bp):
TAAAATTATTTAATT
Found at i:77489208 original size:41 final size:42
Alignment explanation
Indices: 77489145--77489239 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 42
77489135 TAAGACTACG
*
77489145 TGTAAGACCATATCTAGGATATGG-CATCATATGAGATTTCA
1 TGTAAGACCATATCTAGAATATGGTCATCATATGAGATTTCA
** *
77489186 TGTAAGACCATATCTCA-AATATGGTGTTGATATGAGATTTCA
1 TGTAAGACCATATCT-AGAATATGGTCATCATATGAGATTTCA
*
77489228 TATAAGACCATA
1 TGTAAGACCATA
77489240 GTTGGGCTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
41 21 0.45
42 26 0.55
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATATCTAGAATATGGTCATCATATGAGATTTCA
Found at i:77492660 original size:43 final size:43
Alignment explanation
Indices: 77492500--77492671 Score: 210
Period size: 43 Copynumber: 4.0 Consensus size: 43
77492490 CATAGGATTC
*
77492500 CGATATGTG-TTATCGTGTAAGACCACATCTGGGACGTTGGCAT
1 CGATATTTGATTA-CGTGTAAGACCACATCTGGGACGTTGGCAT
* *
77492543 CGACT-TATGATTTACGTATAAGACCACATCTGGGACGTTGGCAT
1 CGA-TATTTGA-TTACGTGTAAGACCACATCTGGGACGTTGGCAT
*
77492587 CG-TATTTGATTTCGTGTAAGACC-CTATCTGGGACAG-TGGCAT
1 CGATATTTGATTACGTGTAAGACCAC-ATCTGGGAC-GTTGGCAT
* *
77492629 CGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATTTGATTACGTGTAAGACCACATCTGGGACGTTGGCAT
77492672 TGTACGAGCT
Statistics
Matches: 112, Mismatches: 8, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
41 1 0.01
42 31 0.28
43 44 0.39
44 33 0.29
45 3 0.03
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (43 bp):
CGATATTTGATTACGTGTAAGACCACATCTGGGACGTTGGCAT
Found at i:77496546 original size:27 final size:27
Alignment explanation
Indices: 77496516--77496693 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
77496506 ATATTGAGTC
* * * *
77496516 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
77496543 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
77496570 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
77496598 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
77496625 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
77496652 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
77496679 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77496694 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:77496655 original size:82 final size:81
Alignment explanation
Indices: 77496537--77496692 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
77496527 TGCTATATAA
* *
77496537 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
77496602 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
77496619 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
77496683 CACTTAGTGC
65 CACTTAGTGC
77496693 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:77505199 original size:47 final size:47
Alignment explanation
Indices: 77505148--77505449 Score: 525
Period size: 47 Copynumber: 6.4 Consensus size: 47
77505138 TTAGGATTCT
* * *
77505148 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
77505195 ATGTGATGAATGTGACAGTGTATATATGTGATAAGGCCTAATAGTCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
77505242 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
77505289 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
77505336 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
77505383 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
77505430 ATGTGATGAATGTGAAAGTG
1 ATGTGATGAATGTGAAAGTG
77505450 ACGTGATGGA
Statistics
Matches: 243, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
46 1 0.00
47 242 1.00
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:77505457 original size:20 final size:20
Alignment explanation
Indices: 77505432--77505469 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
77505422 AATGGCCGAT
77505432 GTGATGAATGTGAAAGTGAC
1 GTGATGAATGTGAAAGTGAC
*
77505452 GTGATGGATGTGAAAGTG
1 GTGATGAATGTGAAAGTG
77505470 TATAAATGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.03, G:0.39, T:0.26
Consensus pattern (20 bp):
GTGATGAATGTGAAAGTGAC
Found at i:77505659 original size:37 final size:37
Alignment explanation
Indices: 77505603--77505681 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
77505593 CCGAGCTCTA
* * *
77505603 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
77505640 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
77505677 AAGAC
1 AAGAC
77505682 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:77507420 original size:42 final size:43
Alignment explanation
Indices: 77507370--77507475 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 43
77507360 ATGTGTAGGG
* * *
77507370 CCACATCTGGAACGTTGGCATC-ATATTTCATTTCGTGTAAGA
1 CCACATCTGGGACGTTGGCATCGATATTTCATTACATGTAAGA
*
77507412 CC-CTATCTGGGACAG-TGGCATCGATATTTGATTACATGTAAGA
1 CCAC-ATCTGGGAC-GTTGGCATCGATATTTCATTACATGTAAGA
*
77507455 CCACGTCTGGGACGTTGGCAT
1 CCACATCTGGGACGTTGGCAT
77507476 TGTACGAGCT
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
41 1 0.02
42 18 0.33
43 34 0.63
44 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.30
Consensus pattern (43 bp):
CCACATCTGGGACGTTGGCATCGATATTTCATTACATGTAAGA
Found at i:77509188 original size:47 final size:47
Alignment explanation
Indices: 77509109--77509269 Score: 232
Period size: 47 Copynumber: 3.4 Consensus size: 47
77509099 CCCTTCGGGA
* * * * * *
77509109 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
77509156 CCTGTCACATATATACACTTTCACATTTATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77509203 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77509250 CTTATCACATATATACACTT
1 CTTATCACATATATACACTT
77509270 CATCAATCGC
Statistics
Matches: 100, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 100 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:77509351 original size:119 final size:120
Alignment explanation
Indices: 77509164--77509388 Score: 416
Period size: 119 Copynumber: 1.9 Consensus size: 120
77509154 GCCCTGTCAC
* *
77509164 ATATATACACTTTCACATTTATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
77509229 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTCATCAATCGCACCT
66 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTCATCAATCGCACCT
*
77509284 ATATATACACTTTCACATTCATCACATCGGCCATTCGGCC-TATCACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
77509348 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
66 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
77509389 TCACATTCAT
Statistics
Matches: 102, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
119 65 0.64
120 37 0.36
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.33
Consensus pattern (120 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTCATCAATCGCACCT
Found at i:77509393 original size:47 final size:47
Alignment explanation
Indices: 77509284--77509622 Score: 567
Period size: 47 Copynumber: 7.1 Consensus size: 47
77509274 AATCGCACCT
77509284 ATATATACACTTTCACATTCATCACATCGGCCATTCGGCC-TATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCAC
*
77509330 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCAC
77509377 ATATATACACTTTCACATTCATCACAT-GGCCATTCGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCAC
77509423 ATATATATACACTTTCACATTCATCACATCGGCCATT-GGCCTTATCAC
1 --ATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCAC
*
77509471 ATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 --ATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCAC
*
77509520 ATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 --ATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCAC
*
77509569 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCAC
77509616 ATATATA
1 ATATATA
77509623 TACACTCTCA
Statistics
Matches: 283, Mismatches: 5, Indels: 9
0.95 0.02 0.03
Matches are distributed among these distances:
46 57 0.20
47 85 0.30
48 74 0.26
49 67 0.24
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCAC
Found at i:77509498 original size:27 final size:27
Alignment explanation
Indices: 77509466--77509548 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 27
77509456 CATTGGCCTT
77509466 ATCACATATATATACACTTTCACATTC
1 ATCACATATATATACACTTTCACATTC
** * * *
77509493 ATCAC--AT-T-GGC-CATTCGGCCTT-
1 ATCACATATATATACACTTTC-ACATTC
77509515 ATCACATATATATACACTTTCACATTC
1 ATCACATATATATACACTTTCACATTC
77509542 ATCACAT
1 ATCACAT
77509549 TGGCCATTCG
Statistics
Matches: 39, Mismatches: 10, Indels: 14
0.62 0.16 0.22
Matches are distributed among these distances:
22 9 0.23
23 4 0.10
24 3 0.08
25 3 0.08
26 4 0.10
27 16 0.41
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.35
Consensus pattern (27 bp):
ATCACATATATATACACTTTCACATTC
Found at i:77509532 original size:49 final size:49
Alignment explanation
Indices: 77509283--77509635 Score: 598
Period size: 49 Copynumber: 7.4 Consensus size: 49
77509273 CAATCGCACC
77509283 TATATATACACTTTCACATTCATCACATCGGCCATTCGGCC-TATCAC-
1 TATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACA
*
77509330 -ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-
1 TATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACA
77509377 -ATATATACACTTTCACATTCATCACAT-GGCCATTCGGCCTTATCACA
1 TATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACA
77509424 TATATATACACTTTCACATTCATCACATCGGCCATT-GGCCTTATCACA
1 TATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACA
*
77509472 TATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 TATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACA
*
77509521 TATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC-
1 TATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACA
*
77509569 -ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 TATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACA
*
77509617 TATATATACACTCTCACAT
1 TATATATACACTTTCACAT
77509636 CACAATTATC
Statistics
Matches: 293, Mismatches: 6, Indels: 12
0.94 0.02 0.04
Matches are distributed among these distances:
46 57 0.19
47 78 0.27
48 74 0.25
49 84 0.29
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
TATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACA
Found at i:77509578 original size:96 final size:95
Alignment explanation
Indices: 77509284--77509635 Score: 604
Period size: 96 Copynumber: 3.7 Consensus size: 95
77509274 AATCGCACCT
77509284 ATATATACACTTTCACATTCATCACATCGGCCATTCGGCC-TATCAC--ATATATACACTTTCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATACACTTTCAC
77509346 ATTCATCACATCGGCCATTAGGCCTTATCAC
66 ATTCATCACATCGGCCATT-GGCCTTATCAC
77509377 ATATATACACTTTCACATTCATCACAT-GGCCATTCGGCCTTATCACATATATATACACTTTCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATACACTTTCAC
77509441 ATTCATCACATCGGCCATTGGCCTTATCAC
66 ATTCATCACATCGGCCATTGGCCTTATCAC
*
77509471 ATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTC
1 --ATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATACACTTTC
*
77509536 ACATTCATCACATTGGCCATTCGGCCTTATCAC
64 ACATTCATCACATCGGCCATT-GGCCTTATCAC
* *
77509569 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTCTCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATACACTTTCAC
77509634 AT
66 AT
77509636 CACAATTATC
Statistics
Matches: 248, Mismatches: 4, Indels: 11
0.94 0.02 0.04
Matches are distributed among these distances:
92 12 0.05
93 33 0.13
94 11 0.04
95 35 0.14
96 91 0.37
97 55 0.22
98 11 0.04
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (95 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATACACTTTCAC
ATTCATCACATCGGCCATTGGCCTTATCAC
Found at i:77514339 original size:28 final size:29
Alignment explanation
Indices: 77514285--77514340 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 29
77514275 ACAGGGGTTA
* *
77514285 TCACAGGGCCAAGCACACGTCCGTGTCCC
1 TCACAGGGCCAAGCACACGCCCATGTCCC
* *
77514314 TCACATGGCCTAG-ACACGCCCATGTCC
1 TCACAGGGCCAAGCACACGCCCATGTCC
77514341 AAAACCCGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.21, C:0.41, G:0.21, T:0.16
Consensus pattern (29 bp):
TCACAGGGCCAAGCACACGCCCATGTCCC
Found at i:77519671 original size:32 final size:32
Alignment explanation
Indices: 77519630--77519693 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
77519620 ATCAACTAGG
*
77519630 ACTGACTTGCCTAGAGTGTTTGACACCTTAAT
1 ACTGACTTGCCTAGAGGGTTTGACACCTTAAT
77519662 ACTGACTTGCCTAGAGGGTTTGACACCTTAAT
1 ACTGACTTGCCTAGAGGGTTTGACACCTTAAT
77519694 CACAAATTCC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (32 bp):
ACTGACTTGCCTAGAGGGTTTGACACCTTAAT
Found at i:77521651 original size:28 final size:29
Alignment explanation
Indices: 77521601--77521656 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 29
77521591 ACAGGGGTTA
77521601 TCACACGGCCAAGCACACGCCCGTGTCCC
1 TCACACGGCCAAGCACACGCCCGTGTCCC
* *
77521630 TCACATGGCCTAG-ACACGCCCGTGTCC
1 TCACACGGCCAAGCACACGCCCGTGTCC
77521657 AAAAACCTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 14 0.56
29 11 0.44
ACGTcount: A:0.20, C:0.45, G:0.21, T:0.14
Consensus pattern (29 bp):
TCACACGGCCAAGCACACGCCCGTGTCCC
Found at i:77532536 original size:27 final size:26
Alignment explanation
Indices: 77532488--77532547 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
77532478 GCAAGGCTGC
*
77532488 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
77532515 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
77532541 AAGATAT
1 CAGATAT
77532548 AAATATATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:77533323 original size:27 final size:27
Alignment explanation
Indices: 77533293--77533400 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 27
77533283 ATCGGTAGTC
*
77533293 CTACCTTATAGGGGTATTTCAATAATT
1 CTACCCTATAGGGGTATTTCAATAATT
* * *
77533320 CTACCCTACAGGGATATTTCGATAATT
1 CTACCCTATAGGGGTATTTCAATAATT
* *
77533347 TTACCCTATAGGGGTATTTCAGTAATT
1 CTACCCTATAGGGGTATTTCAATAATT
* * * *
77533374 CTACCCTACAAGGGTAATTCAGTAATT
1 CTACCCTATAGGGGTATTTCAATAATT
77533401 TTGTCAATCG
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
Consensus pattern (27 bp):
CTACCCTATAGGGGTATTTCAATAATT
Found at i:77533326 original size:54 final size:54
Alignment explanation
Indices: 77533267--77533390 Score: 149
Period size: 54 Copynumber: 2.3 Consensus size: 54
77533257 ATAGTCATTT
* * * *
77533267 TACCCTCCAGGGGTAAATCGGTAGTCCTACCTTATAGGGGTATTTCAATAATTC
1 TACCCTACAGGGGTAAATCGATAATCCTACCCTATAGGGGTATTTCAATAATTC
* ** ** *
77533321 TACCCTACAGGGATATTTCGATAATTTTACCCTATAGGGGTATTTCAGTAATTC
1 TACCCTACAGGGGTAAATCGATAATCCTACCCTATAGGGGTATTTCAATAATTC
*
77533375 TACCCTACAAGGGTAA
1 TACCCTACAGGGGTAA
77533391 TTCAGTAATT
Statistics
Matches: 57, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (54 bp):
TACCCTACAGGGGTAAATCGATAATCCTACCCTATAGGGGTATTTCAATAATTC
Found at i:77533400 original size:54 final size:54
Alignment explanation
Indices: 77533294--77533402 Score: 159
Period size: 54 Copynumber: 2.0 Consensus size: 54
77533284 TCGGTAGTCC
* *
77533294 TACCTTATAGGGGTATTTCAATAATTCTACCCTACAGGGATATTTCGATAATTT
1 TACCCTATAGGGGTATTTCAATAATTCTACCCTACAGGGATAATTCGATAATTT
*
77533348 TACCCTATAGGGGTATTTCAGTAATTCTACCCTACAAGGG-TAATTC-AGTAATTT
1 TACCCTATAGGGGTATTTCAATAATTCTACCCTAC-AGGGATAATTCGA-TAATTT
77533402 T
1 T
77533403 GTCAATCGAG
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
53 1 0.02
54 45 0.90
55 4 0.08
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (54 bp):
TACCCTATAGGGGTATTTCAATAATTCTACCCTACAGGGATAATTCGATAATTT
Found at i:77533414 original size:27 final size:26
Alignment explanation
Indices: 77533384--77533568 Score: 113
Period size: 27 Copynumber: 6.9 Consensus size: 26
77533374 CTACCCTACA
* *
77533384 AGGGTAATTCAGTAATTTTGTCAATCG
1 AGGGTAATTTAGTAATTTT-ACAATCG
****
77533411 AGGGTAAAACGGTAATTCTATA-AATCG
1 AGGGTAATTTAGTAATT-T-TACAATCG
* *
77533438 AGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTAATTTAGTAATTTTACAA-TCG
* *
77533465 AGAGTATTTTAGTAATTTTACAAATCG
1 AGGGTAATTTAGTAATTTTAC-AATCG
* * *
77533492 AGGGTATTTTAGTAATTTTACAAACT
1 AGGGTAATTTAGTAATTTTACAATCG
* * * *
77533518 AGGGATATTTTGGTAATTTTGTA-AACCA
1 AGGG-TAATTTAGTAA-TTT-TACAATCG
* *
77533546 AGGGTATTTTCGTAATTTTACAA
1 AGGGTAATTTAGTAATTTTACAA
77533569 ACCAATGGTA
Statistics
Matches: 131, Mismatches: 18, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
25 4 0.03
26 15 0.11
27 96 0.73
28 13 0.10
29 3 0.02
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (26 bp):
AGGGTAATTTAGTAATTTTACAATCG
Found at i:77533466 original size:54 final size:53
Alignment explanation
Indices: 77533384--77533514 Score: 127
Period size: 54 Copynumber: 2.4 Consensus size: 53
77533374 CTACCCTACA
* * * * * *
77533384 AGGGTAATTCAGTAATTTTGTCAATCGAGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTACTTTAGTAATTTT-ACAATCGAGAGTAAAACAGTAATTCTACAAATCG
* **** *
77533438 AGGGTACTTTGGTAATTTTACAAGTCGAGAGTATTTTAGTAATTTTACAAATCG
1 AGGGTACTTTAGTAATTTTACAA-TCGAGAGTAAAACAGTAATTCTACAAATCG
*
77533492 AGGGTATTTTAGTAATTTTACAA
1 AGGGTACTTTAGTAATTTTACAA
77533515 ACTAGGGATA
Statistics
Matches: 62, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
53 3 0.05
54 59 0.95
ACGTcount: A:0.34, C:0.09, G:0.21, T:0.37
Consensus pattern (53 bp):
AGGGTACTTTAGTAATTTTACAATCGAGAGTAAAACAGTAATTCTACAAATCG
Found at i:77533527 original size:54 final size:55
Alignment explanation
Indices: 77533422--77533570 Score: 176
Period size: 54 Copynumber: 2.7 Consensus size: 55
77533412 GGGTAAAACG
* * * * *
77533422 GTAATTCTATAAATCGAGGGTACTTTGGTAATTTTAC-AAGTCGAGAGTATTTTA
1 GTAATTTTATAAATCGAGGGTATTTTAGTAATTTTACAAACTAGAGAGTATTTTA
* * *
77533476 GTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAACTAGGGA-TATTTTG
1 GTAATTTTATAAATCGAGGGTATTTTAGTAATTTTACAAACTAGAGAGTATTTTA
* * * *
77533530 GTAATTTTGTAAACCAAGGGTATTTTCGTAATTTTACAAAC
1 GTAATTTTATAAATCGAGGGTATTTTAGTAATTTTACAAAC
77533571 CAATGGTATT
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
54 75 0.93
55 6 0.07
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (55 bp):
GTAATTTTATAAATCGAGGGTATTTTAGTAATTTTACAAACTAGAGAGTATTTTA
Found at i:77533590 original size:27 final size:27
Alignment explanation
Indices: 77533438--77533582 Score: 148
Period size: 27 Copynumber: 5.4 Consensus size: 27
77533428 CTATAAATCG
* * ** *
77533438 AGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTATTTTAGTAATTTTACAAACCA
* * *
77533465 AGAGTATTTTAGTAATTTTACAAATCG
1 AGGGTATTTTAGTAATTTTACAAACCA
*
77533492 AGGGTATTTTAGTAATTTTACAAA-CT
1 AGGGTATTTTAGTAATTTTACAAACCA
* **
77533518 AGGGATATTTTGGTAATTTTGTAAACCA
1 AGGG-TATTTTAGTAATTTTACAAACCA
*
77533546 AGGGTATTTTCGTAATTTTACAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCA
*
77533573 ATGGTATTTT
1 AGGGTATTTT
77533583 GGTGATTTGG
Statistics
Matches: 102, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 5 0.05
27 92 0.90
28 5 0.05
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
AGGGTATTTTAGTAATTTTACAAACCA
Found at i:77533597 original size:27 final size:27
Alignment explanation
Indices: 77533468--77533597 Score: 109
Period size: 27 Copynumber: 4.8 Consensus size: 27
77533458 CAAGTCGAGA
* ** * *
77533468 GTATTTTAGTAATTTTACAAATCGAGG
1 GTATTTTGGTAATTTTGTAAACCAAGG
* ** *
77533495 GTATTTTAGTAATTTTACAAA-CTAGG
1 GTATTTTGGTAATTTTGTAAACCAAGG
77533521 GATATTTTGGTAATTTTGTAAACCAAGG
1 G-TATTTTGGTAATTTTGTAAACCAAGG
* ** *
77533549 GTATTTTCGTAATTTTACAAACCAATG
1 GTATTTTGGTAATTTTGTAAACCAAGG
* *
77533576 GTATTTTGGTGATTTGGTAAAC
1 GTATTTTGGTAATTTTGTAAAC
77533598 TAAAGTATTC
Statistics
Matches: 87, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 5 0.06
27 77 0.89
28 5 0.06
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (27 bp):
GTATTTTGGTAATTTTGTAAACCAAGG
Found at i:77540528 original size:27 final size:26
Alignment explanation
Indices: 77540480--77540531 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
77540470 GCTAGGCTGC
*
77540480 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
77540506 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
77540532 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:77541221 original size:27 final size:27
Alignment explanation
Indices: 77541191--77541289 Score: 135
Period size: 27 Copynumber: 3.7 Consensus size: 27
77541181 TCGGTAGTCT
*
77541191 TACCCTACAGGGGTATTTCAATAATTC
1 TACCCTACAGGGGTATTTCGATAATTC
*
77541218 TACCCTACAGGGGTAATTCGATAATTC
1 TACCCTACAGGGGTATTTCGATAATTC
* * * *
77541245 TATCCTATAGGGGTATTTCGGTAATTT
1 TACCCTACAGGGGTATTTCGATAATTC
*
77541272 TACCCTACAAGGGTATTT
1 TACCCTACAGGGGTATTT
77541290 TAGTAATTTT
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.35
Consensus pattern (27 bp):
TACCCTACAGGGGTATTTCGATAATTC
Found at i:77541231 original size:54 final size:54
Alignment explanation
Indices: 77541172--77541286 Score: 133
Period size: 54 Copynumber: 2.1 Consensus size: 54
77541162 TTTACTCTCT
* *
77541172 AGGGGTAAATCGGT-AGTCTTACCCTACAGGGGTATTTCAATAATTCTACCCTAC
1 AGGGGTAAATCGATAATTC-TACCCTACAGGGGTATTTCAATAATTCTACCCTAC
* * * ** *
77541226 AGGGGTAATTCGATAATTCTATCCTATAGGGGTATTTCGGTAATTTTACCCTAC
1 AGGGGTAAATCGATAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTAC
*
77541280 AAGGGTA
1 AGGGGTA
77541287 TTTTAGTAAT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 48 0.94
55 3 0.06
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (54 bp):
AGGGGTAAATCGATAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTAC
Found at i:77541377 original size:54 final size:53
Alignment explanation
Indices: 77541319--77541478 Score: 171
Period size: 54 Copynumber: 3.0 Consensus size: 53
77541309 GGGTAAAATG
* * * *
77541319 GTAATTCTATAAATCGAGGGTCCTTTGGTAATTTTACAAGTCAA-GAGTATTTCA
1 GTAATTTTATAAATCAAGGGT-ATTTGGTAATTTTACAA-ACAAGGAGTATTTCA
* * **
77541373 GTAATTTTACAAATCAAGGGTATTTCAGTAATTTTACAAACAAGGAGTATTTTG
1 GTAATTTTATAAATCAAGGGTATTT-GGTAATTTTACAAACAAGGAGTATTTCA
* *
77541427 GTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGG-GTATTT
1 GTAATTTTATAAATCAAGGGTA-TTTGGTAATTTTACAAA-CAAGGAGTATTT
77541479 TGGTGATTTG
Statistics
Matches: 90, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
53 6 0.07
54 76 0.84
55 8 0.09
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.38
Consensus pattern (53 bp):
GTAATTTTATAAATCAAGGGTATTTGGTAATTTTACAAACAAGGAGTATTTCA
Found at i:77541404 original size:81 final size:81
Alignment explanation
Indices: 77541319--77541478 Score: 187
Period size: 81 Copynumber: 2.0 Consensus size: 81
77541309 GGGTAAAATG
* * * **
77541319 GTAATTCTATAAATCGAGG-GTCCTTTGGTAATTTTACAAGTCAAGAGTATTTCAGTAATTTTAC
1 GTAATTCTACAAA-CAAGGAGTACTTTGGTAATTTTACAAACCAAGAGTATTTCAGTAATTTTAC
*
77541383 AAATCAAGGGTATTTCA
65 AAACCAAGGGTATTTCA
* * ** * **
77541400 GTAATTTTACAAACAAGGAGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACA
1 GTAATTCTACAAACAAGGAGTACTTTGGTAATTTTACAAACCAAGAGTATTTCAGTAATTTTACA
77541465 AACCAAGGGTATTT
66 AACCAAGGGTATTT
77541479 TGGTGATTTG
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
80 4 0.06
81 61 0.94
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.38
Consensus pattern (81 bp):
GTAATTCTACAAACAAGGAGTACTTTGGTAATTTTACAAACCAAGAGTATTTCAGTAATTTTACA
AACCAAGGGTATTTCA
Found at i:77541467 original size:27 final size:27
Alignment explanation
Indices: 77541342--77541487 Score: 177
Period size: 27 Copynumber: 5.4 Consensus size: 27
77541332 TCGAGGGTCC
** *
77541342 TTTGGTAATTTTACAAGTCAAGAGTAT
1 TTTGGTAATTTTACAAACCAAGGGTAT
** *
77541369 TTCAGTAATTTTACAAATCAAGGGTAT
1 TTTGGTAATTTTACAAACCAAGGGTAT
**
77541396 TTCAGTAATTTTACAAA-CAAGGAGTAT
1 TTTGGTAATTTTACAAACCAAGG-GTAT
**
77541423 TTTGGTAATTTTGTAAACCAAGGGTAT
1 TTTGGTAATTTTACAAACCAAGGGTAT
77541450 TTTGGTAATTTTACAAACCAAGGGTAT
1 TTTGGTAATTTTACAAACCAAGGGTAT
*
77541477 TTTGGTGATTT
1 TTTGGTAATTT
77541488 GGTAAACTAA
Statistics
Matches: 106, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 5 0.05
27 96 0.91
28 5 0.05
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (27 bp):
TTTGGTAATTTTACAAACCAAGGGTAT
Found at i:77543388 original size:43 final size:42
Alignment explanation
Indices: 77543319--77543445 Score: 155
Period size: 44 Copynumber: 3.0 Consensus size: 42
77543309 CTCGTACAAC
*
77543319 GCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGAT
1 GCCAATGTCCCAGACGTGGTCTTACATG-AATCACATATCGAT
* * * * * *
77543362 GCCACTGTCCCAAACATGGTCATACATGCAAATCAAAAATCGAT
1 GCCAATGTCCCAGACGTGGTCTTACATG--AATCACATATCGAT
*
77543406 GCCAATGTCCCAGACGTGGTCTTCCATGAATCACATATCG
1 GCCAATGTCCCAGACGTGGTCTTACATGAATCACATATCG
77543446 GAATTCTATG
Statistics
Matches: 68, Mismatches: 15, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
42 10 0.15
43 23 0.34
44 35 0.51
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (42 bp):
GCCAATGTCCCAGACGTGGTCTTACATGAATCACATATCGAT
Found at i:77551631 original size:40 final size:39
Alignment explanation
Indices: 77551558--77551731 Score: 164
Period size: 40 Copynumber: 4.6 Consensus size: 39
77551548 ACCCAAGTTT
* * * * *
77551558 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGC
1 CTTCGGGACTTAGCCCGGATAT-ATCACTAGCACAAATGC
* *
77551597 CTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATG-
1 CTTCGGGACTTAGCCCGGATATATC-ACTAGCACAAATGC
* *
77551636 CTTC-GGTC-TAG-CCGGATA-AT-ACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATATCACTAGCACAAATGC
* * *
77551670 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAGATGC
1 CTTCGGGACTTAGCCCGGAT-ATATCACTAGCACAAATGC
77551710 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
77551732 CATTCAAATG
Statistics
Matches: 114, Mismatches: 12, Indels: 18
0.79 0.08 0.12
Matches are distributed among these distances:
33 11 0.10
34 4 0.04
35 5 0.04
36 10 0.09
37 9 0.08
38 5 0.04
39 19 0.17
40 51 0.45
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGATATATCACTAGCACAAATGC
Found at i:77561874 original size:20 final size:20
Alignment explanation
Indices: 77561849--77561890 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
77561839 TCCGAAATTT
* *
77561849 GTATGTTCTCCGTAGCTAGG
1 GTATGTTCCCCATAGCTAGG
77561869 GTATGTTCCCCATAGCTAGG
1 GTATGTTCCCCATAGCTAGG
77561889 GT
1 GT
77561891 TTTCAACATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.17, C:0.21, G:0.29, T:0.33
Consensus pattern (20 bp):
GTATGTTCCCCATAGCTAGG
Found at i:77578607 original size:27 final size:28
Alignment explanation
Indices: 77578570--77578709 Score: 166
Period size: 27 Copynumber: 5.2 Consensus size: 28
77578560 AGCATGGCTG
** *
77578570 CCAGA-ACAGATA-ATGTGATAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
77578596 CCAGATACAGATA-ATCGTGGCAGGGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
77578624 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
77578651 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
77578678 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
77578705 CCAGA
1 CCAGA
77578710 ACGCTTCCTC
Statistics
Matches: 103, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
26 5 0.05
27 83 0.81
28 15 0.15
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:77580365 original size:26 final size:26
Alignment explanation
Indices: 77580327--77580462 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
77580317 CATGAAATTC
* *
77580327 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
77580353 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
77580379 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
77580405 TTATCATGGAACATTTGCCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
77580431 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
77580457 TTATCA
1 TTATCA
77580463 ATTTGTATCA
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 105 1.00
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:77583272 original size:22 final size:22
Alignment explanation
Indices: 77583246--77583294 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
77583236 ACGTCTGTGC
*
77583246 GCCAAGCCGTGTGCTAGGCCGT
1 GCCAAGCCGTGTGCTAGGCCAT
77583268 GCCAAGCCGTGTGCTAGGCCAT
1 GCCAAGCCGTGTGCTAGGCCAT
77583290 GCCAA
1 GCCAA
77583295 ACCTGTAGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (22 bp):
GCCAAGCCGTGTGCTAGGCCAT
Found at i:77584683 original size:31 final size:31
Alignment explanation
Indices: 77584631--77584690 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
77584621 TGAGGGATGG
* * *
77584631 AAATAGGGTTAGTTTGATATTTTACTTAATT
1 AAATAGAGTTAATTTGATATTTTAATTAATT
77584662 AAATAGAGTTAATTT-ATTATTTTAATTAA
1 AAATAGAGTTAATTTGA-TATTTTAATTAA
77584691 ATAAGGATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 1 0.04
31 24 0.96
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (31 bp):
AAATAGAGTTAATTTGATATTTTAATTAATT
Found at i:77590143 original size:54 final size:54
Alignment explanation
Indices: 77590076--77590186 Score: 123
Period size: 54 Copynumber: 2.1 Consensus size: 54
77590066 GAAGAAATGG
* * * * * ** *
77590076 AAGATTTGGAGAGAACCATGGGAAATGAATAGTTATTAACCTTGGAAGTGAGGA
1 AAGATCTGAAGAGAACAATGAGAAATGAATAGTTATCAACCTTCAAAGCGAGGA
* **
77590130 AAGATCTGAAGAGAGCAATGAGAGGTGAATAGTTATCAACCTTCAAAGCGAGGA
1 AAGATCTGAAGAGAACAATGAGAAATGAATAGTTATCAACCTTCAAAGCGAGGA
77590184 AAG
1 AAG
77590187 GCTCTTGCTA
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.41, C:0.10, G:0.29, T:0.21
Consensus pattern (54 bp):
AAGATCTGAAGAGAACAATGAGAAATGAATAGTTATCAACCTTCAAAGCGAGGA
Found at i:77592999 original size:48 final size:48
Alignment explanation
Indices: 77592914--77593163 Score: 392
Period size: 48 Copynumber: 5.2 Consensus size: 48
77592904 CAAGATAAAT
* * *
77592914 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
77592962 ATATGTATATGTGGTAAAGCCAAATAGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
** *
77593010 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAACATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
77593058 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
77593106 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
77593154 ATGTGTATAT
1 ATATGTATAT
77593164 ATTGTGGCCG
Statistics
Matches: 184, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 184 1.00
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:77594310 original size:56 final size:56
Alignment explanation
Indices: 77594224--77594343 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
77594214 ACAAGGGATG
77594224 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
77594280 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
77594336 ATGGGCAA
1 ATGGGCAA
77594344 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:77595852 original size:47 final size:47
Alignment explanation
Indices: 77595798--77596347 Score: 777
Period size: 47 Copynumber: 11.6 Consensus size: 47
77595788 TATTTGAATA
*
77595798 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
77595845 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
77595894 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
77595943 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
77595990 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
77596039 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGACCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
77596086 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGGCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
77596133 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
77596180 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
77596227 AATGTGAACA-TGCATATATGAGCTAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
77596274 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
77596321 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
77596348 TCCCGAAGGG
Statistics
Matches: 469, Mismatches: 28, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 327 0.70
49 140 0.30
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:77599189 original size:43 final size:43
Alignment explanation
Indices: 77599140--77599280 Score: 237
Period size: 43 Copynumber: 3.3 Consensus size: 43
77599130 GAAACTCGGG
* *
77599140 GATATGTATTCGGGTCTTCGTGCCTAGTAGGCTTCGTGCCGGT
1 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
* *
77599183 GATATGTATTCGGGCCTTCGTGCCGAGCAGGCTTTGTGCCGGT
1 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
*
77599226 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGT
1 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
77599269 GATATGTATTCG
1 GATATGTATTCG
77599281 TGTGACAGCC
Statistics
Matches: 91, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 91 1.00
ACGTcount: A:0.13, C:0.22, G:0.32, T:0.33
Consensus pattern (43 bp):
GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
Found at i:77601802 original size:47 final size:47
Alignment explanation
Indices: 77601750--77602420 Score: 1171
Period size: 47 Copynumber: 14.3 Consensus size: 47
77601740 TACATGATAG
*
77601750 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
77601797 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
77601844 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
77601891 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
77601938 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
77601985 TATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
77602032 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
77602079 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
77602126 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
77602173 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
77602220 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
77602267 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * *
77602314 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * * *
77602361 TATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
77602408 TAAATGTGATAAG
1 TATATGTGATAAG
77602421 TCCCGAAGGG
Statistics
Matches: 597, Mismatches: 27, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 597 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:77603424 original size:43 final size:43
Alignment explanation
Indices: 77603363--77603444 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
77603353 GGGTGTTACA
**
77603363 ATTCGGGACTTCGTGCCTAGCAGGCTTCGTGCCGGTGATATGT
1 ATTCGGGACTTCGTGCCTAGCAGGCTTAATGCCGGTGATATGT
*
77603406 ATTCGGGTCTTCGTGCCTAGCAGGCTTAATGCCGGTGAT
1 ATTCGGGACTTCGTGCCTAGCAGGCTTAATGCCGGTGAT
77603445 TCGAGCAAGG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.15, C:0.23, G:0.32, T:0.30
Consensus pattern (43 bp):
ATTCGGGACTTCGTGCCTAGCAGGCTTAATGCCGGTGATATGT
Found at i:77603634 original size:29 final size:29
Alignment explanation
Indices: 77603601--77603700 Score: 78
Period size: 29 Copynumber: 3.4 Consensus size: 29
77603591 ATGATTAGAG
*
77603601 GCACTGTGTGTGCAAATTCCGTTAACCGA
1 GCACTATGTGTGCAAATTCCGTTAACCGA
* * **
77603630 GCACTATGTGTGCGAGA-TCAG-TAATTGA
1 GCACTATGTGTGC-AAATTCCGTTAACCGA
* * * *
77603658 GGCACTGTGTGTGCGAATTCCTTTAACCAA
1 -GCACTATGTGTGCAAATTCCGTTAACCGA
*
77603688 GCATTATGTGTGC
1 GCACTATGTGTGC
77603701 GAGATTGGTA
Statistics
Matches: 52, Mismatches: 15, Indels: 8
0.69 0.20 0.11
Matches are distributed among these distances:
28 6 0.12
29 40 0.77
30 6 0.12
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTATGTGTGCAAATTCCGTTAACCGA
Found at i:77603726 original size:29 final size:29
Alignment explanation
Indices: 77603630--77603762 Score: 85
Period size: 29 Copynumber: 4.6 Consensus size: 29
77603620 CGTTAACCGA
*
77603630 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
* ** ** *
77603659 GCACTGTGTGTGCGA-ATTCCTTTAA-CCAA
1 GCACTATGTGTGCGAGATT--AGTAATTGAG
* *
77603688 GCATTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
* * ** *
77603717 GCACTGTGTGTGCGA-TTTCTTCAATCGA-
1 GCACTATGTGTGCGAGATTAGT-AATTGAG
77603745 GCACTATGTGTGCGAGAT
1 GCACTATGTGTGCGAGAT
77603763 CGGTCAGTGG
Statistics
Matches: 76, Mismatches: 22, Indels: 12
0.69 0.20 0.11
Matches are distributed among these distances:
28 22 0.29
29 48 0.63
30 6 0.08
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.32
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATTAGTAATTGAG
Found at i:77603776 original size:28 final size:28
Alignment explanation
Indices: 77603692--77603784 Score: 73
Period size: 28 Copynumber: 3.3 Consensus size: 28
77603682 AACCAAGCAT
*
77603692 TATGTGTGCGAGATTGGT-AATTGAGGCAC
1 TATGTGTGCGAGATCGGTCAA-TG-GGCAC
* ** * *
77603721 TGTGTGTGCGATTTC-TTCAATCGAGCAC
1 TATGTGTGCGAGATCGGTCAAT-GGGCAC
*
77603749 TATGTGTGCGAGATCGGTCAGTGGGCAC
1 TATGTGTGCGAGATCGGTCAATGGGCAC
*
77603777 TAAGTGTG
1 TATGTGTG
77603785 TGAAATGAGA
Statistics
Matches: 48, Mismatches: 13, Indels: 7
0.71 0.19 0.10
Matches are distributed among these distances:
28 30 0.62
29 18 0.38
ACGTcount: A:0.20, C:0.15, G:0.33, T:0.31
Consensus pattern (28 bp):
TATGTGTGCGAGATCGGTCAATGGGCAC
Found at i:77603786 original size:58 final size:58
Alignment explanation
Indices: 77603598--77603766 Score: 243
Period size: 58 Copynumber: 2.9 Consensus size: 58
77603588 TGAATGATTA
* *
77603598 GAGGCACTGTGTGTGCAAATTCCGTT-AACCGAGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAATTCC-TTCAACCGAGCACTATGTGTGCGAGATCGGTAATT
* * * *
77603656 GAGGCACTGTGTGTGCGAATTCCTTTAACCAAGCATTATGTGTGCGAGATTGGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTCAACCGAGCACTATGTGTGCGAGATCGGTAATT
* *
77603714 GAGGCACTGTGTGTGCG-ATTTCTTCAATCGAGCACTATGTGTGCGAGATCGGT
1 GAGGCACTGTGTGTGCGAATTCCTTCAACCGAGCACTATGTGTGCGAGATCGGT
77603767 CAGTGGGCAC
Statistics
Matches: 99, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
57 32 0.32
58 67 0.68
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCGAATTCCTTCAACCGAGCACTATGTGTGCGAGATCGGTAATT
Found at i:77606273 original size:40 final size:40
Alignment explanation
Indices: 77606218--77606473 Score: 376
Period size: 40 Copynumber: 6.4 Consensus size: 40
77606208 GATGATAACG
* * *
77606218 GGGCTAAATCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
77606258 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
*
77606298 AGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
77606338 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
**
77606378 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
77606418 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
77606458 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
77606474 TACTTGGTTT
Statistics
Matches: 203, Mismatches: 11, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
39 16 0.08
40 186 0.92
41 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:77610469 original size:48 final size:48
Alignment explanation
Indices: 77610398--77610647 Score: 383
Period size: 48 Copynumber: 5.2 Consensus size: 48
77610388 CAAGATAAAT
* * *
77610398 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
77610446 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGGAATATCTACGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
** *
77610494 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAACATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
77610542 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
77610590 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
77610638 ATGTGTATAT
1 ATATGTATAT
77610648 ATTGTGGCCG
Statistics
Matches: 182, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 182 1.00
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:77610832 original size:37 final size:37
Alignment explanation
Indices: 77610782--77610926 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
77610772 AAATATATTT
77610782 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
77610819 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* *
77610856 CGGGTAAGGCCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* * *
77610893 CGGGTAAGACCCAATAACTACGTGTGGGGATTAT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTAT
77610927 TCGAGCTAAA
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
Found at i:77613353 original size:40 final size:42
Alignment explanation
Indices: 77613277--77613359 Score: 116
Period size: 44 Copynumber: 2.0 Consensus size: 42
77613267 GTTGTATCAA
77613277 TCTCGCACACTAAGTGCATATATATATATACAAAGCTATCTCGT
1 TCTCGCACACTAAGTG-ATATATATATATA-AAAGCTATCTCGT
* *
77613321 TCTCGCACACTAAGTG-TATATATATCT-GAAGCTATCTCG
1 TCTCGCACACTAAGTGATATATATATATAAAAGCTATCTCG
77613360 ACTTCACACA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
40 11 0.30
42 10 0.27
44 16 0.43
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (42 bp):
TCTCGCACACTAAGTGATATATATATATAAAAGCTATCTCGT
Found at i:77613370 original size:40 final size:42
Alignment explanation
Indices: 77613277--77613376 Score: 98
Period size: 40 Copynumber: 2.4 Consensus size: 42
77613267 GTTGTATCAA
* *
77613277 TCTCGCACACTAAGTGCATATATATATATACAAAGCTATCTCGT
1 TCTCACACACTAAGTG-ATATATATATATA-AAAGCTATCTCGC
* * *
77613321 TCTCGCACACTAAGTG-TATATATATCT-GAAGCTATCTCGAC
1 TCTCACACACTAAGTGATATATATATATAAAAGCTATCTCG-C
*
77613362 T-TCACACACCAAGTG
1 TCTCACACACTAAGTG
77613377 CCCATAATTA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
40 23 0.46
41 1 0.02
42 10 0.20
44 16 0.32
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (42 bp):
TCTCACACACTAAGTGATATATATATATAAAAGCTATCTCGC
Found at i:77619919 original size:17 final size:17
Alignment explanation
Indices: 77619899--77619931 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
77619889 CTTTTATTAA
77619899 GTTTTTAAGATTCATTC
1 GTTTTTAAGATTCATTC
77619916 GTTTTTAAGATTCATT
1 GTTTTTAAGATTCATT
77619932 TGTTCTACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.09, G:0.12, T:0.55
Consensus pattern (17 bp):
GTTTTTAAGATTCATTC
Found at i:77626698 original size:23 final size:22
Alignment explanation
Indices: 77626662--77626744 Score: 103
Period size: 23 Copynumber: 3.7 Consensus size: 22
77626652 AAGCTCCTTC
*
77626662 GAGCTGAACAGTAAGCTCTATT
1 GAGCTAAACAGTAAGCTCTATT
*
77626684 AAGCTAAAACAGTAAGCTCTATT
1 GAGCT-AAACAGTAAGCTCTATT
* *
77626707 GAGCTAAACGGTAAGCTCTAAT
1 GAGCTAAACAGTAAGCTCTATT
*
77626729 GAGATGAAACAGTAAG
1 GAGCT-AAACAGTAAG
77626745 ATCTTACGAG
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
22 23 0.44
23 29 0.56
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.23
Consensus pattern (22 bp):
GAGCTAAACAGTAAGCTCTATT
Found at i:77626701 original size:45 final size:45
Alignment explanation
Indices: 77626650--77626757 Score: 112
Period size: 45 Copynumber: 2.4 Consensus size: 45
77626640 GTCATGGTCG
* * *
77626650 GTAAGCTCCT-TCGAGCTGAACAGTAAGCTCTATTAAGCTAAAACA
1 GTAAGCT-CTATCGAGCTAAACAGTAAGCTCTAATAAGATAAAACA
* * * *
77626695 GTAAGCTCTATTGAGCTAAACGGTAAGCTCTAATGAGATGAAACA
1 GTAAGCTCTATCGAGCTAAACAGTAAGCTCTAATAAGATAAAACA
*
77626740 GTAAGATCT-TACGAGCTA
1 GTAAGCTCTAT-CGAGCTA
77626758 TGGTGAGTCC
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
44 3 0.06
45 49 0.94
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (45 bp):
GTAAGCTCTATCGAGCTAAACAGTAAGCTCTAATAAGATAAAACA
Found at i:77634140 original size:40 final size:40
Alignment explanation
Indices: 77634082--77634314 Score: 371
Period size: 40 Copynumber: 5.9 Consensus size: 40
77634072 GATATAGCTT
*
77634082 CTCGCTCAA-TGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
77634121 CTCGCACAATTGCCTTCGGGACTTAGCCCGATTATAGTAA
1 CTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
77634161 CTAGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
77634201 CTCGCACAATTGCCTTCGGGACTTGGCCAGGTTATAGTAA
1 CTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAA
* * *
77634241 CTCGCACAAATGCCTGCGGGACTTAGCCCGGATATAGTAA
1 CTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
77634281 CTCGCACAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 CTCGCACAATTGCCTTCGGGACTTAGCCCGGTTAT
77634315 CAATATGAAA
Statistics
Matches: 179, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 21 0.12
40 158 0.88
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:77634360 original size:18 final size:20
Alignment explanation
Indices: 77634323--77634361 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
77634313 ATCAATATGA
*
77634323 AAATCCATGCACATATCAAT
1 AAATCCATGCACACATCAAT
77634343 AAAT-CATG-ACACATCAAT
1 AAATCCATGCACACATCAAT
77634361 A
1 A
77634362 TTTCACTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 4 0.22
20 4 0.22
ACGTcount: A:0.49, C:0.23, G:0.05, T:0.23
Consensus pattern (20 bp):
AAATCCATGCACACATCAAT
Found at i:77642121 original size:40 final size:40
Alignment explanation
Indices: 77642067--77642300 Score: 371
Period size: 40 Copynumber: 5.9 Consensus size: 40
77642057 GATATAGCTT
*
77642067 CTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* * *
77642107 CTCGCACAATTGCCTTCGAGACTTAGCCCGGTTACAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
77642147 CTAGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
77642187 CTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
77642227 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
77642267 CTCGCACAAATGCCTTTGGG-CTTAGCCCGGTTAT
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
77642301 CAATCCGAAT
Statistics
Matches: 180, Mismatches: 14, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 13 0.07
40 167 0.93
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:77646889 original size:40 final size:41
Alignment explanation
Indices: 77646834--77646914 Score: 146
Period size: 40 Copynumber: 2.0 Consensus size: 41
77646824 ATGTCGTCAA
*
77646834 TGAACACAACAACAAATCTGTCTAAATAC-GTCTAAAGATC
1 TGAACACAACAACAAATCTGTCTAAATACGGACTAAAGATC
77646874 TGAACACAACAACAAATCTGTCTAAATACGGACTAAAGATC
1 TGAACACAACAACAAATCTGTCTAAATACGGACTAAAGATC
77646915 CGATTTATCA
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
40 29 0.74
41 10 0.26
ACGTcount: A:0.46, C:0.22, G:0.11, T:0.21
Consensus pattern (41 bp):
TGAACACAACAACAAATCTGTCTAAATACGGACTAAAGATC
Found at i:77651721 original size:23 final size:22
Alignment explanation
Indices: 77651684--77651728 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
77651674 TATTTAGCCA
77651684 TGTGATATGGCTTGGTTTTGGT
1 TGTGATATGGCTTGGTTTTGGT
*
77651706 TGTGATTATGGTTTGGTTTTGGT
1 TGTGA-TATGGCTTGGTTTTGGT
77651729 ATATGAAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.09, C:0.02, G:0.36, T:0.53
Consensus pattern (22 bp):
TGTGATATGGCTTGGTTTTGGT
Found at i:77654988 original size:44 final size:43
Alignment explanation
Indices: 77654893--77655010 Score: 134
Period size: 44 Copynumber: 2.8 Consensus size: 43
77654883 AAATAAGTAA
* *
77654893 CCAAAGCTGTATCAA-TCTCGCACACTAAGTGCATATATATAT
1 CCAAAGCTATCTCAATTCTCGCACACTAAGTGCATATATATAT
*
77654935 CCAAAGCTATCTC-GTTCTCGCACACTAAGTGCAAATATATATAT
1 CCAAAGCTATCTCAATTCTCGCACACTAAGTGC--ATATATATAT
*** *
77654979 CTGTAGCTATCTCAATT-TCGCACACCAAGTGC
1 CCAAAGCTATCTCAATTCTCGCACACTAAGTGC
77655011 CCATAATGAG
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
42 28 0.44
44 34 0.53
45 2 0.03
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (43 bp):
CCAAAGCTATCTCAATTCTCGCACACTAAGTGCATATATATAT
Found at i:77669083 original size:42 final size:42
Alignment explanation
Indices: 77669036--77669141 Score: 115
Period size: 43 Copynumber: 2.5 Consensus size: 42
77669026 AGATTTATGC
* * * *
77669036 GTAAGACCATGTTTGGGACATCAACATC-GTATTTGATTTCGT
1 GTAAGACCATGTCTGGGACAT-AACATCAATATTTGATTACAT
* **
77669078 GTAAGACCCTGTCTGGGACAGTGGCATCAATATTTGATTACAT
1 GTAAGACCATGTCTGGGACA-TAACATCAATATTTGATTACAT
*
77669121 GTAAGACCACGTCTGGGACAT
1 GTAAGACCATGTCTGGGACAT
77669142 TGGCATTGTA
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
42 23 0.43
43 30 0.57
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (42 bp):
GTAAGACCATGTCTGGGACATAACATCAATATTTGATTACAT
Found at i:77669113 original size:43 final size:43
Alignment explanation
Indices: 77669065--77669147 Score: 123
Period size: 43 Copynumber: 1.9 Consensus size: 43
77669055 ATCAACATCG
* *
77669065 TATTTGATTTCGTGTAAGACC-CTGTCTGGGACAGTGGCATCAA
1 TATTTGATTACATGTAAGACCAC-GTCTGGGACAGTGGCATCAA
*
77669108 TATTTGATTACATGTAAGACCACGTCTGGGACATTGGCAT
1 TATTTGATTACATGTAAGACCACGTCTGGGACAGTGGCAT
77669148 TGTACAAGCT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 35 0.97
44 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (43 bp):
TATTTGATTACATGTAAGACCACGTCTGGGACAGTGGCATCAA
Found at i:77671090 original size:43 final size:43
Alignment explanation
Indices: 77671042--77671146 Score: 183
Period size: 43 Copynumber: 2.4 Consensus size: 43
77671032 TACGCCTGCT
77671042 AGGCACGAAGGCCCGAATACACATCACCGGCACGAAACCTACA
1 AGGCACGAAGGCCCGAATACACATCACCGGCACGAAACCTACA
* * *
77671085 AGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCT
1 AGGCACGAAGGCCCGAATACACATCACCGGCACGAAACCTACA
77671128 AGGCACGAAGGCCCGAATA
1 AGGCACGAAGGCCCGAATA
77671147 TAATACCAGC
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.34, C:0.33, G:0.25, T:0.08
Consensus pattern (43 bp):
AGGCACGAAGGCCCGAATACACATCACCGGCACGAAACCTACA
Found at i:77671187 original size:38 final size:38
Alignment explanation
Indices: 77671139--77671340 Score: 278
Period size: 38 Copynumber: 5.3 Consensus size: 38
77671129 GGCACGAAGG
* * * * *
77671139 CCCGAATATAATACCAGCACTAGGCCTGCAGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
77671177 CCCGGATATAATACCAGCACGAAGCCTACGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
** * **
77671215 CCCGGATATTTTACCAGTACGAAGCCTGCAGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGC-GGGATTTAA
*
77671254 GCCCGGATATAATACCAGCACGAAGCTTGCGGGATTTAA
1 -CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
77671293 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
77671331 CCCGGATATA
1 CCCGGATATA
77671341 CATCGAATAT
Statistics
Matches: 143, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
38 104 0.73
39 14 0.10
40 25 0.17
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.22
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:77671269 original size:78 final size:76
Alignment explanation
Indices: 77671139--77671340 Score: 278
Period size: 78 Copynumber: 2.6 Consensus size: 76
77671129 GGCACGAAGG
* * * * *
77671139 CCCGAATATAATACCAGCACTAGGCCTGCAGGATTTATCCCGGATATAATACCAGCACGAAGCCT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
77671204 ACGGGATTTAA
66 ACGGGATTTAA
** * **
77671215 CCCGGATATTTTACCAGTACGAAGCCTGCAGGTCTTTAAGCCCGGATATAATACCAGCACGAAGC
1 CCCGGATATAATACCAGCACGAAGCCTGC-GGGATTTAA-CCCGGATATAATACCAGCACGAAGC
* *
77671280 TTGCGGGATTTAA
64 CTACGGGATTTAA
77671293 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATA
77671341 CATCGAATAT
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
76 33 0.31
77 12 0.11
78 62 0.58
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.22
Consensus pattern (76 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
ACGGGATTTAA
Found at i:77686234 original size:37 final size:37
Alignment explanation
Indices: 77686184--77686262 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
77686174 TTATTACGAA
* *
77686184 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
77686221 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
77686258 GTCTT
1 GTCTT
77686263 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:77686460 original size:47 final size:47
Alignment explanation
Indices: 77686381--77686903 Score: 875
Period size: 47 Copynumber: 11.1 Consensus size: 47
77686371 CCCTTCGGGA
* * * * * * *
77686381 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
77686428 CCTGTCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77686475 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77686522 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77686569 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77686616 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77686663 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77686710 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77686757 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77686806 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77686853 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77686900 CTTA
1 CTTA
77686904 CTATCATTTC
Statistics
Matches: 454, Mismatches: 20, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 408 0.90
49 46 0.10
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:77694915 original size:16 final size:16
Alignment explanation
Indices: 77694894--77694937 Score: 60
Period size: 14 Copynumber: 3.0 Consensus size: 16
77694884 GTGTAGTACT
77694894 ATGTGCAGGCTACTAC
1 ATGTGCAGGCTACTAC
77694910 ATGTGCA-G-TACTA-
1 ATGTGCAGGCTACTAC
77694923 A-GTGCAGGCTACTAC
1 ATGTGCAGGCTACTAC
77694938 GTGTACCAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
12 5 0.20
13 2 0.08
14 10 0.40
15 1 0.04
16 7 0.28
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (16 bp):
ATGTGCAGGCTACTAC
Found at i:77694920 original size:28 final size:28
Alignment explanation
Indices: 77694880--77694937 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
77694870 TTGTGAGAAC
* *
77694880 ACATGTGTAGTACTATGTGCAGGCTACT
1 ACATGTGCAGTACTAAGTGCAGGCTACT
77694908 ACATGTGCAGTACTAAGTGCAGGCTACT
1 ACATGTGCAGTACTAAGTGCAGGCTACT
77694936 AC
1 AC
77694938 GTGTACCAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (28 bp):
ACATGTGCAGTACTAAGTGCAGGCTACT
Found at i:77694970 original size:50 final size:50
Alignment explanation
Indices: 77694909--77695150 Score: 229
Period size: 50 Copynumber: 4.8 Consensus size: 50
77694899 CAGGCTACTA
* * *
77694909 CATGTGCAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAAGTTG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAAGTCG
* * * *
77694959 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-ACAACTTCAA-TCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGA-TAGTT-AAGTCG
** * * * *
77695010 TGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAAGTCG
* * * * ** * *
77695060 CGTGTGTAGTACTAAGTGTAGGCTACTACGTATACTGGATTGTT-GGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAAGTCG
* *
77695109 CATGTGTAGTACTAAGTTCAGGCTACTATGCGTACCAGATAG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG
77695151 CTTCAGTTAC
Statistics
Matches: 154, Mismatches: 33, Indels: 11
0.78 0.17 0.06
Matches are distributed among these distances:
49 38 0.25
50 75 0.49
51 39 0.25
52 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAAGTCG
Found at i:77695368 original size:16 final size:15
Alignment explanation
Indices: 77695347--77695376 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
77695337 GAATGAAGTA
77695347 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
77695363 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
77695377 TAAAACAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:77697760 original size:27 final size:27
Alignment explanation
Indices: 77697730--77697907 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
77697720 ATATCGAGTC
* *
77697730 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
77697757 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
77697784 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
77697812 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
** **
77697839 CGCACACTTAGTGC-ATCATGTTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
77697866 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
77697893 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77697908 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:77711641 original size:11 final size:11
Alignment explanation
Indices: 77711612--77711651 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
77711602 GTGCCAACCT
77711612 TTCGGTCACT-
1 TTCGGTCACTC
77711622 TTCGGTCACTC
1 TTCGGTCACTC
*
77711633 TTCGCTCACTC
1 TTCGGTCACTC
77711644 TTCGGTCA
1 TTCGGTCA
77711652 TTACGGCCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 10 0.37
11 17 0.63
ACGTcount: A:0.10, C:0.35, G:0.17, T:0.38
Consensus pattern (11 bp):
TTCGGTCACTC
Found at i:77723413 original size:33 final size:33
Alignment explanation
Indices: 77723375--77723441 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
77723365 ATTTACCTAC
77723375 AACTAATTCCCAAGCTTTAAACTACACTAAACT
1 AACTAATTCCCAAGCTTTAAACTACACTAAACT
77723408 AACTAATTCCCAAGCTTTAAACTACACTAAACT
1 AACTAATTCCCAAGCTTTAAACTACACTAAACT
77723441 A
1 A
77723442 CTCAGTTAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.43, C:0.27, G:0.03, T:0.27
Consensus pattern (33 bp):
AACTAATTCCCAAGCTTTAAACTACACTAAACT
Done.