Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 236 of 333
Found at i:77723725 original size:40 final size:40
Alignment explanation
Indices: 77723681--77723756 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
77723671 CACTTATTAT
*
77723681 CTTGTATTTAGTCTGAGAAAATGCATTTTATTTGATTTTA
1 CTTGTATTTAGTCTGAGAAAATGCATTCTATTTGATTTTA
*
77723721 CTTGTATTTAGTCTTAGAAAATGCATTCTATTTGAT
1 CTTGTATTTAGTCTGAGAAAATGCATTCTATTTGAT
77723757 CTGATTTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.28, C:0.09, G:0.14, T:0.49
Consensus pattern (40 bp):
CTTGTATTTAGTCTGAGAAAATGCATTCTATTTGATTTTA
Found at i:77724754 original size:17 final size:17
Alignment explanation
Indices: 77724703--77724758 Score: 64
Period size: 17 Copynumber: 3.5 Consensus size: 17
77724693 GGCCCAAAAT
77724703 CCCACACGCCTGTGTGG
1 CCCACACGCCTGTGTGG
** *
77724720 TTCACATG--TGTG-GG
1 CCCACACGCCTGTGTGG
77724734 CCCACACGCCTGTGTGG
1 CCCACACGCCTGTGTGG
77724751 CCCACACG
1 CCCACACG
77724759 ACCCAATTGG
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
14 7 0.23
15 4 0.13
16 4 0.13
17 15 0.50
ACGTcount: A:0.14, C:0.38, G:0.29, T:0.20
Consensus pattern (17 bp):
CCCACACGCCTGTGTGG
Found at i:77732568 original size:93 final size:93
Alignment explanation
Indices: 77732434--77732605 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
77732424 CGCCCATAAG
* *
77732434 CGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
77732499 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
77732527 CGAATTCGGACTCAACTCAACGAGTTCG-GACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGAG-CATTCGCATCCATAAGTGAACTCGGACTCAACTC
77732591 AACGAGTTCGGATGC
65 AACGAGTTCGGATGC
77732606 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 1 0.01
93 73 0.99
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:77732601 original size:46 final size:47
Alignment explanation
Indices: 77732427--77732602 Score: 202
Period size: 46 Copynumber: 3.8 Consensus size: 47
77732417 TGTAACCCGC
* * *
77732427 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGTAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
* *
77732473 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTCGCAT
* *
77732523 -C-TCA-CGAATTCGGACTCAACTCAACGAGTTCGGA-CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
*
77732566 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
77732603 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 60 0.55
47 30 0.28
48 3 0.03
49 2 0.02
50 2 0.02
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
Found at i:77732621 original size:46 final size:44
Alignment explanation
Indices: 77732478--77732621 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 44
77732468 CGTATCCATA
77732478 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * * *
77732525 CA-CGAATTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
77732571 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
77732617 AGTGA
1 AGTGA
77732622 CATGTCACTT
Statistics
Matches: 78, Mismatches: 11, Indels: 16
0.74 0.10 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 32 0.41
47 30 0.38
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:77738028 original size:24 final size:23
Alignment explanation
Indices: 77737992--77738037 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
77737982 CATATTACCT
*
77737992 TGCTTCAGCTCAAGAAATTCTTTA
1 TGCTTCAGATCAAGAAA-TCTTTA
* *
77738016 TGCTTCTGATCAATAAATCTTT
1 TGCTTCAGATCAAGAAATCTTT
77738038 CACTAATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.28, C:0.20, G:0.11, T:0.41
Consensus pattern (23 bp):
TGCTTCAGATCAAGAAATCTTTA
Found at i:77740187 original size:46 final size:46
Alignment explanation
Indices: 77740012--77740187 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
77740002 TGTAACCCGC
* * * * *
77740012 CCATAAGCGAGCTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * ***
77740058 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGATGCCTATTTATAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTCGCAT
*
77740108 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
77740151 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
77740188 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 60 0.57
47 28 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:77740206 original size:46 final size:44
Alignment explanation
Indices: 77740027--77740206 Score: 132
Period size: 46 Copynumber: 3.9 Consensus size: 44
77740017 AGCGAGCTCA
* * * *
77740027 GACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT-AAGTGAACTCG
1 GACTCAACTCAACGAGTTC-GG-ATGC-CATCCATCTAGTGAACTCG
* ** *
77740073 AACTCAACTCAACGAGTTCGGATGCCTATTTATATCTCA-CGAACTCG
1 GACTCAACTCAACGAGTTCGGATGCC-A--TCCATCT-AGTGAACTCG
* *
77740120 GACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGTGAACTCG
1 GACTCAACTCAACGAGTTCGG--ATGC-CATCCATCTAGTGAACTCG
*
77740166 GACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGTGA
1 GACTCAACTCAACGAGTTCGGATGC-CATCCAT-CTAGTGA
77740207 CATGTCACTT
Statistics
Matches: 105, Mismatches: 18, Indels: 22
0.72 0.12 0.15
Matches are distributed among these distances:
43 1 0.01
44 12 0.11
45 3 0.03
46 53 0.50
47 30 0.29
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (44 bp):
GACTCAACTCAACGAGTTCGGATGCCATCCATCTAGTGAACTCG
Found at i:77741862 original size:40 final size:40
Alignment explanation
Indices: 77741810--77742081 Score: 436
Period size: 40 Copynumber: 6.8 Consensus size: 40
77741800 ATAACCACAA
* * * *
77741810 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
77741850 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
77741890 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
77741930 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA--TCAACTC
*
77741972 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
77742012 GCACAAATGCCTTCGGGTCTGAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
77742052 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
77742082 GTATTCAAAT
Statistics
Matches: 217, Mismatches: 13, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
40 177 0.82
42 40 0.18
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:77742001 original size:122 final size:122
Alignment explanation
Indices: 77741810--77742089 Score: 467
Period size: 122 Copynumber: 2.3 Consensus size: 122
77741800 ATAACCACAA
* * * *
77741810 GCACAATTGCCTTCGGGTCTTAACCCGGGTATA-G-CAACTCGCACGAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
* *
77741873 CCCGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
66 CCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTGAGCCCGGATATATCAACTC
77741930 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
*
77741995 CCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTGAGCCCGGATATATCAACTT
66 CCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTGAGCCCGGATATATCAACTC
*
77742052 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAT-TCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAA
77742090 ATGCTCATGC
Statistics
Matches: 150, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
120 30 0.20
121 5 0.03
122 115 0.77
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (122 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
CCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTGAGCCCGGATATATCAACTC
Found at i:77752131 original size:19 final size:18
Alignment explanation
Indices: 77752107--77752142 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
77752097 CCATTTTTAA
*
77752107 TTTTTATTTTAATATTTTG
1 TTTTTAATTTAAT-TTTTG
77752126 TTTTTAATTTAATTTTT
1 TTTTTAATTTAATTTTT
77752143 AAATTCTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (18 bp):
TTTTTAATTTAATTTTTG
Found at i:77755124 original size:19 final size:18
Alignment explanation
Indices: 77755102--77755168 Score: 57
Period size: 19 Copynumber: 3.6 Consensus size: 18
77755092 TTAATTTTAA
77755102 TTTTTTATTTTTGTTCTTG
1 TTTTTTATTTTTGTT-TTG
77755121 TTTTTCTA-TTTTGATTTTG
1 TTTTT-TATTTTTG-TTTTG
* **
77755140 CTTTTTGCTTTTGTTTTTG
1 TTTTTTATTTTTG-TTTTG
77755159 TTTTTT-TTTT
1 TTTTTTATTTT
77755169 AAATTTATTT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
18 4 0.10
19 32 0.80
20 4 0.10
ACGTcount: A:0.04, C:0.06, G:0.10, T:0.79
Consensus pattern (18 bp):
TTTTTTATTTTTGTTTTG
Found at i:77755145 original size:7 final size:6
Alignment explanation
Indices: 77755103--77755168 Score: 62
Period size: 6 Copynumber: 10.8 Consensus size: 6
77755093 TAATTTTAAT
* * * * *
77755103 TTTTTA TTTTTG TTCTTG TTTTTC TATTTTG ATTTTG CTTTTTG CTTTTG
1 TTTTTG TTTTTG TTTTTG TTTTTG T-TTTTG TTTTTG -TTTTTG TTTTTG
77755153 TTTTTG TTTTT- TTTTT
1 TTTTTG TTTTTG TTTTT
77755169 AAATTTATTT
Statistics
Matches: 49, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
5 5 0.10
6 35 0.71
7 9 0.18
ACGTcount: A:0.05, C:0.06, G:0.11, T:0.79
Consensus pattern (6 bp):
TTTTTG
Found at i:77759371 original size:53 final size:54
Alignment explanation
Indices: 77759302--77759504 Score: 194
Period size: 53 Copynumber: 3.8 Consensus size: 54
77759292 TTCCTTTTTA
* * * *
77759302 AACTTGCCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
77759355 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGCG-ATCTTTACCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTATCCTTGCCTTATAG
** * * * * *
77759409 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
77759464 AACTTACAAATGTCATGCCTTGGCATGGTCTTACTTGGTAT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTAT
77759505 TCTTAAACCC
Statistics
Matches: 117, Mismatches: 29, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
53 43 0.37
54 33 0.28
55 41 0.35
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:77766027 original size:23 final size:22
Alignment explanation
Indices: 77765984--77766039 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
77765974 AAAGGGTATC
* *
77765984 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
77766005 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
77766028 TACATATCATAT
1 TACAAATCATAT
77766040 ATGAGATTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.10
22 16 0.53
23 11 0.37
ACGTcount: A:0.45, C:0.16, G:0.04, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:77769592 original size:46 final size:45
Alignment explanation
Indices: 77769542--77769717 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
77769532 TGGTTGAGCA
*
77769542 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
77769588 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCATTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
77769635 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
77769681 CCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
77769718 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:77769698 original size:93 final size:93
Alignment explanation
Indices: 77769539--77769709 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
77769529 GGATGGTTGA
* * * *
77769539 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
77769604 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
77769632 GCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
77769697 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
77769710 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:77782293 original size:49 final size:49
Alignment explanation
Indices: 77782231--77782362 Score: 176
Period size: 49 Copynumber: 2.7 Consensus size: 49
77782221 CGAGATATAC
* *
77782231 AAGCTAGTGTAAGACCTATCTGGGACATGGCATCGACAC-CGATAGATGA
1 AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGA
* * * * * *
77782280 GAGCCAGTGTAAGACCTGTCTAGGACACGACATCGGCCTCGATATATGA
1 AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGA
77782329 AAGCCAGTGTAAGACCTGTCTGGGACATGGCATC
1 AAGCCAGTGTAAGACCTGTCTGGGACATGGCATC
77782363 AACTTTGATG
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
48 1 0.01
49 69 0.99
ACGTcount: A:0.30, C:0.23, G:0.27, T:0.20
Consensus pattern (49 bp):
AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGA
Found at i:77786496 original size:48 final size:48
Alignment explanation
Indices: 77786396--77786635 Score: 339
Period size: 48 Copynumber: 5.1 Consensus size: 48
77786386 ACGAGATCCC
* * *
77786396 GTGTAAGACCATGTTTGGGACATGGCATC--CG-AGATCA---GAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGAT-ATGTGTGCCA
*
77786439 GTGTAAGACCATATCTGGGACATGGCATCGGCGTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCA
* **
77786487 GTGTAAGACCATGTCTAGGACATAACATCGGCGTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCA
* *
77786535 GTGTAAGACCATGTCTGGTACATGGCATCGACGTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCA
*
77786583 GTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCA
77786631 GTGTA
1 GTGTA
77786636 TGTGACACCC
Statistics
Matches: 175, Mismatches: 16, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
43 27 0.15
45 3 0.02
46 3 0.02
48 142 0.81
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCA
Found at i:77789120 original size:47 final size:47
Alignment explanation
Indices: 77789068--77789473 Score: 632
Period size: 47 Copynumber: 8.6 Consensus size: 47
77789058 GATAATTGTG
* *
77789068 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77789115 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
77789162 ATGTGAAAGTGTATATATGTGTTAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77789209 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77789258 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77789305 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77789354 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
77789401 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGCCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77789448 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
77789474 TCCCGAAGGG
Statistics
Matches: 332, Mismatches: 23, Indels: 8
0.91 0.06 0.02
Matches are distributed among these distances:
47 242 0.73
49 90 0.27
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:77789175 original size:96 final size:95
Alignment explanation
Indices: 77789068--77789473 Score: 636
Period size: 96 Copynumber: 4.3 Consensus size: 95
77789058 GATAATTGTG
* * *
77789068 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATATA
77789132 TGTGATAAGGCCTAATGGCCGATGTGATGA
66 TGTGATAAGGCCTAATGGCCGATGTGATGA
* * * *
77789162 ATGTGAAAGTGTATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-ATATAT
77789227 ATGTGATAAGGCCTAATGGCCGATGTGATGA
65 ATGTGATAAGGCCTAATGGCCGATGTGATGA
77789258 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-ATATAT
77789323 ATGTGATAAGGCCTAATGGCCGATGTGATGA
65 ATGTGATAAGGCCTAATGGCCGATGTGATGA
77789354 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-TATATA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATATA
* * * * * * * *
77789418 TGTGACAGGGCCGAGTGCCCAACGTGATGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGA
*
77789448 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
77789474 TCCCGAAGGG
Statistics
Matches: 292, Mismatches: 18, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
94 106 0.36
96 186 0.64
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (95 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATATA
TGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:77789234 original size:143 final size:143
Alignment explanation
Indices: 77789068--77789473 Score: 640
Period size: 143 Copynumber: 2.9 Consensus size: 143
77789058 GATAATTGTG
77789068 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
77789131 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGTTAAGGCCGAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
77789196 GCCAATGTGATGA
131 GCCAATGTGATGA
77789209 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
77789274 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAA
*
77789339 TGGCCGATGTGATGA
129 TGGCCAATGTGATGA
*
77789354 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * * * *
77789417 ATGTGACAGGGCCGAGTGCCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
77789474 TCCCGAAGGG
Statistics
Matches: 246, Mismatches: 15, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
141 19 0.08
142 2 0.01
143 181 0.74
145 44 0.18
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
GCCAATGTGATGA
Found at i:77795766 original size:48 final size:48
Alignment explanation
Indices: 77795651--77795874 Score: 259
Period size: 48 Copynumber: 4.6 Consensus size: 48
77795641 TGAGATCCCG
* * *** * * *
77795651 TGTAAGACCATGTCTGGGTCATGGTATCGGCAACCGAGATGAGAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGC-GTTGATATGTGTGCCAA
* *
77795700 TGCAAGACCATGTTTGGGACATGGCATCGGCGTTGATATGTGTGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAA
** *
77795748 TGTAAGACCATGTCTGGGACATGGCATTAGCGTTGATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAA
* * * * * *
77795796 TGTAAGACCATGTCTAGTACATGTCATCGGCTTTGATATATGTGCTAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAA
*
77795844 TGTAATACCATGTCTGGGACATGGCATCGGC
1 TGTAAGACCATGTCTGGGACATGGCATCGGC
77795875 ACCGATATGA
Statistics
Matches: 147, Mismatches: 28, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
48 120 0.82
49 27 0.18
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.28
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAA
Found at i:77795898 original size:96 final size:95
Alignment explanation
Indices: 77795651--77795902 Score: 256
Period size: 96 Copynumber: 2.6 Consensus size: 95
77795641 TGAGATCCCG
* * * * * *
77795651 TGTAAGACCATGTCTGGGTCATGGTATCGGCAACCGAGATGAGAGCC-AATGCAAGACCATGTTT
1 TGTAAGACCATGTCTGGGACATGGCATCGGC-ACCGATATGAGATCCGTAT--AAGACCATGTCT
* *
77795715 GGGACATGGCATCGGCGTTGATATGTGTGCCAA
63 AGGACATGGCATCGGCGTTGATATATGTGCCAA
** *** * *
77795748 TGTAAGACCATGTCTGGGACATGGCATTAGCGTTGATATGTG-TGCCAGTGTAAGACCATGTCTA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATGAGAT-CC-GTATAAGACCATGTCTA
* * * *
77795812 GTACATGTCATCGGCTTTGATATATGTGCTAA
64 GGACATGGCATCGGCGTTGATATATGTGCCAA
*
77795844 TGTAATACCATGTCTGGGACATGGCATCGGCACCGATATGAGACTCCGTATAAGACCAT
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATGAGA-TCCGTATAAGACCAT
77795903 ATTTGGGATA
Statistics
Matches: 123, Mismatches: 27, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
96 92 0.75
97 29 0.24
98 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (95 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATGAGATCCGTATAAGACCATGTCTAGG
ACATGGCATCGGCGTTGATATATGTGCCAA
Found at i:77802573 original size:49 final size:49
Alignment explanation
Indices: 77802517--77802639 Score: 149
Period size: 49 Copynumber: 2.5 Consensus size: 49
77802507 TATTGTGTGT
* * * *
77802517 CAGTGTAAGTCCTGTCTGGGACATGGTATTGACAC-CGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGTATCGAC-CTCAATAGATGAAAGC
* * * *
77802566 CAGTGTAAGACCTGTCTAGGACACGGTATCGGCCTCAATAGATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGTATCGACCTCAATAGATGAAAGC
*
77802615 CAGTGTAAGACCTGTTTGGGACATG
1 CAGTGTAAGACCTGTCTGGGACATG
77802640 CCATCGACAT
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
48 1 0.02
49 61 0.98
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGTATCGACCTCAATAGATGAAAGC
Found at i:77807106 original size:57 final size:57
Alignment explanation
Indices: 77807018--77807152 Score: 245
Period size: 57 Copynumber: 2.4 Consensus size: 57
77807008 ATTGTATAAC
* *
77807018 AGGATTACCAGTCTAGGATAAATCCTTTATATAACGTAAGCTCAGAGGAGCTCAATT
1 AGGATTACCAGTCCAGGCTAAATCCTTTATATAACGTAAGCTCAGAGGAGCTCAATT
77807075 AGGATTACCAGTCCAGGCTAAATCCTTTATATAACGTAAGCTCAGAGGAGCTCAATT
1 AGGATTACCAGTCCAGGCTAAATCCTTTATATAACGTAAGCTCAGAGGAGCTCAATT
77807132 AGGA-TACCAGTCCAGGCTAAA
1 AGGATTACCAGTCCAGGCTAAA
77807153 CCCTAATCAT
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
56 17 0.22
57 59 0.78
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (57 bp):
AGGATTACCAGTCCAGGCTAAATCCTTTATATAACGTAAGCTCAGAGGAGCTCAATT
Found at i:77807179 original size:57 final size:57
Alignment explanation
Indices: 77807018--77807179 Score: 220
Period size: 57 Copynumber: 2.8 Consensus size: 57
77807008 ATTGTATAAC
* * * *
77807018 AGGATTACCAGTCTAGGATAAATCCTTTATATAACGTAAGCTCAGAGGAGCTCAATT
1 AGGATTACCAGTCCAGGCTAAATCCCTAATATAACGTAAGCTCAGAGGAGCTCAATT
* *
77807075 AGGATTACCAGTCCAGGCTAAATCCTTTATATAACGTAAGCTCAGAGGAGCTCAATT
1 AGGATTACCAGTCCAGGCTAAATCCCTAATATAACGTAAGCTCAGAGGAGCTCAATT
* *
77807132 AGGA-TACCAGTCCAGGCTAAA-CCCTAATCATAACATATGCTCGAGAGG
1 AGGATTACCAGTCCAGGCTAAATCCCTAAT-ATAACGTAAGCTC-AGAGG
77807180 TATTATCAGG
Statistics
Matches: 97, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
55 5 0.05
56 28 0.29
57 64 0.66
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.25
Consensus pattern (57 bp):
AGGATTACCAGTCCAGGCTAAATCCCTAATATAACGTAAGCTCAGAGGAGCTCAATT
Found at i:77809324 original size:34 final size:34
Alignment explanation
Indices: 77809281--77809348 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
77809271 CCCTACCAAT
77809281 TTGATTTTATTCCCTTATTTAAGATTAAGCTACA
1 TTGATTTTATTCCCTTATTTAAGATTAAGCTACA
77809315 TTGATTTTATTCCCTTATTTAAGATTAAGCTACA
1 TTGATTTTATTCCCTTATTTAAGATTAAGCTACA
77809349 ATCATCAAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.15, G:0.09, T:0.47
Consensus pattern (34 bp):
TTGATTTTATTCCCTTATTTAAGATTAAGCTACA
Found at i:77809629 original size:9 final size:9
Alignment explanation
Indices: 77809615--77809644 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
77809605 ACATATGCTC
77809615 TCTCTTTTT
1 TCTCTTTTT
77809624 TCTCTTTTT
1 TCTCTTTTT
*
77809633 TTTCTTTTT
1 TCTCTTTTT
77809642 TCT
1 TCT
77809645 ATTTATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (9 bp):
TCTCTTTTT
Found at i:77809640 original size:18 final size:19
Alignment explanation
Indices: 77809617--77809654 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
77809607 ATATGCTCTC
*
77809617 TCTTTTTTCTCTTT-TTTT
1 TCTTTTTTCTATTTATTTT
77809635 TCTTTTTTCTATTTATTTT
1 TCTTTTTTCTATTTATTTT
77809654 T
1 T
77809655 AACGAGCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.05, C:0.13, G:0.00, T:0.82
Consensus pattern (19 bp):
TCTTTTTTCTATTTATTTT
Found at i:77814015 original size:23 final size:23
Alignment explanation
Indices: 77813985--77814031 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
77813975 CTCAGTGCTA
77813985 TGATTCTGCCACAGCACCTTCAG
1 TGATTCTGCCACAGCACCTTCAG
77814008 TGATTCTGCCACAGCACCTTCAG
1 TGATTCTGCCACAGCACCTTCAG
77814031 T
1 T
77814032 AATGGAATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.21, C:0.34, G:0.17, T:0.28
Consensus pattern (23 bp):
TGATTCTGCCACAGCACCTTCAG
Found at i:77817958 original size:29 final size:29
Alignment explanation
Indices: 77817916--77817973 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
77817906 TAGAGAAAAC
77817916 TGGATTTTAATCGTGCTTATCAGTAATAA
1 TGGATTTTAATCGTGCTTATCAGTAATAA
77817945 TGGATTTTAATCGTGCTTATCAGTAATAA
1 TGGATTTTAATCGTGCTTATCAGTAATAA
77817974 AACCATTAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.41
Consensus pattern (29 bp):
TGGATTTTAATCGTGCTTATCAGTAATAA
Found at i:77818653 original size:61 final size:61
Alignment explanation
Indices: 77818558--77818680 Score: 246
Period size: 61 Copynumber: 2.0 Consensus size: 61
77818548 CATTAACCCA
77818558 CCCCGATGCAATGCAACATACAAGGAACGGCATGCTAATATGCAATAATCAATTACACAAT
1 CCCCGATGCAATGCAACATACAAGGAACGGCATGCTAATATGCAATAATCAATTACACAAT
77818619 CCCCGATGCAATGCAACATACAAGGAACGGCATGCTAATATGCAATAATCAATTACACAAT
1 CCCCGATGCAATGCAACATACAAGGAACGGCATGCTAATATGCAATAATCAATTACACAAT
77818680 C
1 C
77818681 AGTACAACAT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.41, C:0.25, G:0.15, T:0.20
Consensus pattern (61 bp):
CCCCGATGCAATGCAACATACAAGGAACGGCATGCTAATATGCAATAATCAATTACACAAT
Found at i:77820560 original size:48 final size:48
Alignment explanation
Indices: 77820488--77820916 Score: 425
Period size: 48 Copynumber: 8.6 Consensus size: 48
77820478 CAAAAAAGTA
* *
77820488 CCAATGCCATGTCCCCGACATGGTCTTACA-T-GAATCCACATATCATCG
1 CCAATGCCATGTCCCAGACATGGTCTTACACTGGCA--CACATATCATCG
* * *
77820536 TCAATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCATCA
1 CCAATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCG
* * *
77820584 CCGATGCCATGTCTCAGACATGGTCTTACATTGGCACACATATCATCG
1 CCAATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCG
* * *
77820632 CCGATGCCATGTCCCCGACATGGTCTTACACTGGCACACATAT-ACTGGCA
1 CCAATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCA-T--CG
* * * *
77820682 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTCACACTAGCACACATATCATC-
1 C-C--A--AT-GCC-ATG---TC--CCAGACATGGTCTTACACTGGCACACATATCATCG
*
77820741 ACAGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCG
1 CCA-ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCG
* * *
77820790 CCGATGCCATATCCCAGGCATGGTCTTACACTGGCACACATATCATCG
1 CCAATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCG
** * * * *
77820838 CTGATGCCATGTCTCGGACATGGTCTTACACTAGTACACATATCATCG
1 CCAATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCG
* *
77820886 CCGATGCCATGTCCCTGACATGGTCTTACAC
1 CCAATGCCATGTCCCAGACATGGTCTTACAC
77820917 AAGCACATTT
Statistics
Matches: 321, Mismatches: 41, Indels: 38
0.80 0.10 0.09
Matches are distributed among these distances:
47 1 0.00
48 265 0.83
49 2 0.01
50 5 0.02
51 1 0.00
53 3 0.01
54 2 0.01
55 4 0.01
56 3 0.01
57 3 0.01
58 1 0.00
60 2 0.01
62 28 0.09
63 1 0.00
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (48 bp):
CCAATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCG
Found at i:77820655 original size:96 final size:96
Alignment explanation
Indices: 77820491--77820916 Score: 496
Period size: 96 Copynumber: 4.3 Consensus size: 96
77820481 AAAAGTACCA
* * * * *
77820491 ATGCCATGTCCCCGACATGGTCTTACA-T-GAATCCACATATCATCGTCAATGCCATGTCCTAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCA--CACATATCATCGCCGATGCCATGTCCCAGA
77820554 CATGGTCTTACACTGGCACACATATCATCACCG
64 CATGGTCTTACACTGGCACACATATCATCACCG
* * *
77820587 ATGCCATGTCTCAGACATGGTCTTACATTGGCACACATATCATCGCCGATGCCATGTCCCCGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATGCCATGTCCCAGACA
77820652 TGGTCTTACACTGGCACACATATACTGGCACACATATCATCACCG
66 TGGTC-T----T-----AC----ACTGGCACACATATCATCACCG
* * * *
77820697 ATGCCATGTCCCAGACATGGTCTCACACTAGCACACATATCATCACAGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATGCCATGTCCCAGACA
*
77820762 TGGTCTTACACTGGCACACATATCATCGCCG
66 TGGTCTTACACTGGCACACATATCATCACCG
* * * * *
77820793 ATGCCATATCCCAGGCATGGTCTTACACTGGCACACATATCATCGCTGATGCCATGTCTCGGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATGCCATGTCCCAGACA
* * *
77820858 TGGTCTTACACTAGTACACATATCATCGCCG
66 TGGTCTTACACTGGCACACATATCATCACCG
*
77820889 ATGCCATGTCCCTGACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
77820917 AAGCACATTT
Statistics
Matches: 286, Mismatches: 28, Indels: 32
0.83 0.08 0.09
Matches are distributed among these distances:
96 190 0.66
97 2 0.01
98 2 0.01
100 2 0.01
101 1 0.00
105 1 0.00
106 2 0.01
109 1 0.00
110 85 0.30
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATGCCATGTCCCAGACA
TGGTCTTACACTGGCACACATATCATCACCG
Found at i:77820680 original size:14 final size:14
Alignment explanation
Indices: 77820661--77820688 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
77820651 ATGGTCTTAC
77820661 ACTGGCACACATAT
1 ACTGGCACACATAT
77820675 ACTGGCACACATAT
1 ACTGGCACACATAT
77820689 CATCACCGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.29, G:0.14, T:0.21
Consensus pattern (14 bp):
ACTGGCACACATAT
Found at i:77820714 original size:62 final size:62
Alignment explanation
Indices: 77820615--77820736 Score: 208
Period size: 62 Copynumber: 2.0 Consensus size: 62
77820605 GGTCTTACAT
* * * *
77820615 TGGCACACATATCATCGCCGATGCCATGTCCCCGACATGGTCTTACACTGGCACACATATAC
1 TGGCACACATATCATCACCGATGCCATGTCCCAGACATGGTCTCACACTAGCACACATATAC
77820677 TGGCACACATATCATCACCGATGCCATGTCCCAGACATGGTCTCACACTAGCACACATAT
1 TGGCACACATATCATCACCGATGCCATGTCCCAGACATGGTCTCACACTAGCACACATAT
77820737 CATCACAGAT
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 56 1.00
ACGTcount: A:0.28, C:0.34, G:0.16, T:0.22
Consensus pattern (62 bp):
TGGCACACATATCATCACCGATGCCATGTCCCAGACATGGTCTCACACTAGCACACATATAC
Found at i:77820762 original size:110 final size:110
Alignment explanation
Indices: 77820565--77820784 Score: 377
Period size: 110 Copynumber: 2.0 Consensus size: 110
77820555 ATGGTCTTAC
* * * *
77820565 ACTGGCACACATATCATCACCGATGCCATGTCTCAGACATGGTCTTACATTGGCACACATATCAT
1 ACTGGCACACATATCATCACCGATGCCATGTCCCAGACATGGTCTCACACTAGCACACATATCAT
* * *
77820630 CGCCGATGCCATGTCCCCGACATGGTCTTACACTGGCACACATAT
66 CACAGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATAT
77820675 ACTGGCACACATATCATCACCGATGCCATGTCCCAGACATGGTCTCACACTAGCACACATATCAT
1 ACTGGCACACATATCATCACCGATGCCATGTCCCAGACATGGTCTCACACTAGCACACATATCAT
77820740 CACAGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATAT
66 CACAGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATAT
77820785 CATCGCCGAT
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
110 103 1.00
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.23
Consensus pattern (110 bp):
ACTGGCACACATATCATCACCGATGCCATGTCCCAGACATGGTCTCACACTAGCACACATATCAT
CACAGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATAT
Found at i:77820812 original size:158 final size:158
Alignment explanation
Indices: 77820524--77820832 Score: 510
Period size: 158 Copynumber: 2.0 Consensus size: 158
77820514 TACATGAATC
** * * * *
77820524 CACATATCATCGTCAATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCATCACCGAT
1 CACATATCATCACCAATGCCATGTCCCAGACATGGTCTCACACTAGCACACATATCATCACAGAT
* * * *
77820589 GCCATGTCTCAGACATGGTCTTACATTGGCACACATATCATCGCCGATGCCATGTCCCCGACATG
66 GCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATGCCATATCCCAGACATG
77820654 GTCTTACACTGGCACACATATACTGGCA
131 GTCTTACACTGGCACACATATACTGGCA
*
77820682 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTCACACTAGCACACATATCATCACAGAT
1 CACATATCATCACCAATGCCATGTCCCAGACATGGTCTCACACTAGCACACATATCATCACAGAT
*
77820747 GCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATGCCATATCCCAGGCATG
66 GCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATGCCATATCCCAGACATG
77820812 GTCTTACACTGGCACACATAT
131 GTCTTACACTGGCACACATAT
77820833 CATCGCTGAT
Statistics
Matches: 139, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
158 139 1.00
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.24
Consensus pattern (158 bp):
CACATATCATCACCAATGCCATGTCCCAGACATGGTCTCACACTAGCACACATATCATCACAGAT
GCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATGCCATATCCCAGACATG
GTCTTACACTGGCACACATATACTGGCA
Found at i:77820846 original size:206 final size:205
Alignment explanation
Indices: 77820491--77820880 Score: 595
Period size: 206 Copynumber: 1.9 Consensus size: 205
77820481 AAAAGTACCA
* * * *
77820491 ATGCCATGTCCCCGACATGGTCTTACATGAATCCACATATCATCGTCAATGCCATGTCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTCACATGAA-CCACATATCATCGACAATGCCATGTCCCAGACA
* * *
77820556 TGGTCTTACACTGGCACACATATCATCACCGATGCCATGTCTCAGACATGGTCTTACATTGGCAC
65 TGGTCTTACACTGGCACACATATCATCACCGATGCCATATCCCAGACATGGTCTTACACTGGCAC
*
77820621 ACATATCATCGCCGATGCCATGTCCCCGACATGGTCTTACACTGGCACACATATACTGGCACACA
130 ACATATCATCGCCGATGCCATGTCCCCGACATGGTCTTACACTAGCACACATATACTGGCACACA
77820686 TATCATCACCG
195 TATCATCACCG
*
77820697 ATGCCATGTCCCAGACATGGTCTCACACT-AGCACACATATCATC-ACAGATGCCATGTCCCAGA
1 ATGCCATGTCCCAGACATGGTCTCACA-TGAAC-CACATATCATCGACA-ATGCCATGTCCCAGA
* *
77820760 CATGGTCTTACACTGGCACACATATCATCGCCGATGCCATATCCCAGGCATGGTCTTACACTGGC
63 CATGGTCTTACACTGGCACACATATCATCACCGATGCCATATCCCAGACATGGTCTTACACTGGC
* * * *
77820825 ACACATATCATCGCTGATGCCATGTCTCGGACATGGTCTTACACTAGTACACATAT
128 ACACATATCATCGCCGATGCCATGTCCCCGACATGGTCTTACACTAGCACACATAT
77820881 CATCGCCGAT
Statistics
Matches: 166, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
205 3 0.02
206 162 0.98
207 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (205 bp):
ATGCCATGTCCCAGACATGGTCTCACATGAACCACATATCATCGACAATGCCATGTCCCAGACAT
GGTCTTACACTGGCACACATATCATCACCGATGCCATATCCCAGACATGGTCTTACACTGGCACA
CATATCATCGCCGATGCCATGTCCCCGACATGGTCTTACACTAGCACACATATACTGGCACACAT
ATCATCACCG
Found at i:77825030 original size:26 final size:25
Alignment explanation
Indices: 77824985--77825055 Score: 97
Period size: 26 Copynumber: 2.8 Consensus size: 25
77824975 GAGGAAGTGC
*
77824985 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCTAGTTTACCA
* *
77825010 AAAAGGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGC-TTTGCCCTAGTTTACCA
*
77825036 AAAAAGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCTAGTT
77825056 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 19 0.47
26 21 0.52
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCTAGTTTACCA
Found at i:77825321 original size:31 final size:31
Alignment explanation
Indices: 77825279--77825358 Score: 126
Period size: 31 Copynumber: 2.6 Consensus size: 31
77825269 TACAGTAAAG
*
77825279 GCTTCGACCCAGTGATATGAATAATGAAAAA
1 GCTTCGGCCCAGTGATATGAATAATGAAAAA
* *
77825310 GCTTCGGCCCAGTGATATGAATAATGTAAAG
1 GCTTCGGCCCAGTGATATGAATAATGAAAAA
77825341 GCTTCGGCCCAGT-ATATG
1 GCTTCGGCCCAGTGATATG
77825359 CTGAGATTCA
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 5 0.11
31 41 0.89
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.25
Consensus pattern (31 bp):
GCTTCGGCCCAGTGATATGAATAATGAAAAA
Found at i:77833852 original size:39 final size:39
Alignment explanation
Indices: 77833639--77833835 Score: 322
Period size: 39 Copynumber: 5.1 Consensus size: 39
77833629 TGTGAATATA
* * * *
77833639 TATATGCAAGAATTTTATCCGGACTTTAGGTCCGCGGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
77833678 TGTAAGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
77833717 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
77833756 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
77833795 TATATGCGAGAATTATATCCGGACTTTAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
77833834 TA
1 TA
77833836 CGTGTTGGAC
Statistics
Matches: 147, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 147 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:77838866 original size:39 final size:38
Alignment explanation
Indices: 77838835--77838990 Score: 136
Period size: 39 Copynumber: 4.0 Consensus size: 38
77838825 TATATGTCCA
* *
77838835 GCACGTAGCCTGCAGACCTAAAGTCCGGATATAATTCTC
1 GCACATAGCCTGCAGACATAAAGTCCGGATAT-ATTCTC
* * *
77838874 GCATATAGCCTGCGGACATGAAGTCCGGATATAATTCTC
1 GCACATAGCCTGCAGACATAAAGTCCGGATAT-ATTCTC
* *
77838913 GCATATAGCCTGC-GAACCTGAAA-TCCGGATATAATTCTC
1 GCACATAGCCTGCAG-ACAT-AAAGTCCGGATAT-ATTCTC
** * * *
77838952 GCTTATAGCCTGCGGACCTGAAGTCCGGATATAATTCTC
1 GCACATAGCCTGCAGACATAAAGTCCGGATAT-ATTCTC
77838991 ACGTATATAT
Statistics
Matches: 104, Mismatches: 9, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
38 3 0.03
39 98 0.94
40 3 0.03
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (38 bp):
GCACATAGCCTGCAGACATAAAGTCCGGATATATTCTC
Found at i:77838922 original size:78 final size:78
Alignment explanation
Indices: 77838840--77838990 Score: 252
Period size: 78 Copynumber: 1.9 Consensus size: 78
77838830 GTCCAGCACG
77838840 TAGCCTGC-AGACCT-AAAGTCCGGATATAATTCTCGCATATAGCCTGCGGACATGAAGTCCGGA
1 TAGCCTGCGA-ACCTGAAA-TCCGGATATAATTCTCGCATATAGCCTGCGGACATGAAGTCCGGA
77838903 TATAATTCTCGCATA
64 TATAATTCTCGCATA
* *
77838918 TAGCCTGCGAACCTGAAATCCGGATATAATTCTCGCTTATAGCCTGCGGACCTGAAGTCCGGATA
1 TAGCCTGCGAACCTGAAATCCGGATATAATTCTCGCATATAGCCTGCGGACATGAAGTCCGGATA
77838983 TAATTCTC
66 TAATTCTC
77838991 ACGTATATAT
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
78 65 0.94
79 4 0.06
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (78 bp):
TAGCCTGCGAACCTGAAATCCGGATATAATTCTCGCATATAGCCTGCGGACATGAAGTCCGGATA
TAATTCTCGCATA
Found at i:77845270 original size:39 final size:39
Alignment explanation
Indices: 77845208--77845365 Score: 262
Period size: 39 Copynumber: 4.1 Consensus size: 39
77845198 TGTGAATATA
*
77845208 TATATGCAAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
77845247 TATAAGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
77845286 TATATGCGAGAATTATATCTGGACTTCATGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
77845325 TATATGCGAGAATTATATCCGGACTTTAGTTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
77845364 TA
1 TA
77845366 CGTGTTGGAC
Statistics
Matches: 110, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 110 1.00
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:77846036 original size:18 final size:18
Alignment explanation
Indices: 77846013--77846047 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
77846003 AGGGCTGACC
77846013 AAGTATCTTTTGGTAATT
1 AAGTATCTTTTGGTAATT
77846031 AAGTATCTTTTGGTAAT
1 AAGTATCTTTTGGTAAT
77846048 GTATATTCGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.17, T:0.49
Consensus pattern (18 bp):
AAGTATCTTTTGGTAATT
Found at i:77847155 original size:17 final size:18
Alignment explanation
Indices: 77847133--77847169 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
77847123 GGCCTTAGCC
77847133 CATTAT-AGAA-TAAGAAA
1 CATTATCAGAACT-AGAAA
77847150 CATTATCAGAACTAGAAA
1 CATTATCAGAACTAGAAA
77847168 CA
1 CA
77847170 AAATGAGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.33
18 11 0.61
19 1 0.06
ACGTcount: A:0.54, C:0.14, G:0.11, T:0.22
Consensus pattern (18 bp):
CATTATCAGAACTAGAAA
Found at i:77847191 original size:12 final size:12
Alignment explanation
Indices: 77847163--77847228 Score: 53
Period size: 12 Copynumber: 5.4 Consensus size: 12
77847153 TATCAGAACT
* *
77847163 AGAAACAAAATG
1 AGAATCAAAATC
77847175 AGAATCAAAATC
1 AGAATCAAAATC
* **
77847187 AGAAT-TAGGTGAC
1 AGAATCAAAAT--C
77847200 AGAATCAAAATC
1 AGAATCAAAATC
*
77847212 AGAATCAGAATC
1 AGAATCAAAATC
77847224 AGAAT
1 AGAAT
77847229 TAGGTGACAG
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
11 2 0.05
12 32 0.76
13 6 0.14
14 2 0.05
ACGTcount: A:0.55, C:0.12, G:0.17, T:0.17
Consensus pattern (12 bp):
AGAATCAAAATC
Found at i:77847209 original size:37 final size:37
Alignment explanation
Indices: 77847163--77847262 Score: 146
Period size: 37 Copynumber: 2.7 Consensus size: 37
77847153 TATCAGAACT
* *
77847163 AGAAACAAAATGAGAATCAAAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAAAATCAGAATTAGGTGAC
*
77847200 AGAATCAAAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAAAATCAGAATTAGGTGAC
* * *
77847237 AGAATTAGAATCAGAATCAATATCAG
1 AGAATCAAAATCAGAATCAAAATCAG
77847263 GTAACAGAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 56 1.00
ACGTcount: A:0.51, C:0.12, G:0.18, T:0.19
Consensus pattern (37 bp):
AGAATCAAAATCAGAATCAAAATCAGAATTAGGTGAC
Found at i:77847217 original size:6 final size:6
Alignment explanation
Indices: 77847199--77847284 Score: 61
Period size: 6 Copynumber: 14.0 Consensus size: 6
77847189 AATTAGGTGA
* * * *
77847199 CAGAAT CAAAAT CAGAAT CAGAAT CAGAAT TAG-GT GACAGAAT TAGAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CAGAAT CAGAAT --CAGAAT CAGAAT
*
77847248 CAGAAT CA-ATAT CAGGTAA- CAGAAT CAAAAT CAGAAT
1 CAGAAT CAGA-AT CA-G-AAT CAGAAT CAGAAT CAGAAT
77847285 GTGAATGCAA
Statistics
Matches: 62, Mismatches: 10, Indels: 16
0.70 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 51 0.82
7 4 0.06
8 2 0.03
9 1 0.02
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (6 bp):
CAGAAT
Found at i:77847218 original size:31 final size:31
Alignment explanation
Indices: 77847177--77847284 Score: 101
Period size: 31 Copynumber: 3.3 Consensus size: 31
77847167 ACAAAATGAG
*
77847177 AATCAAAATCAGAATTAGGTGACAGAATCAAAATCA
1 AATCAGAATCAGAATTAGGTGACAGAATC---A--A
* *
77847213 GAATCAGAATCAGAATTAGGTGACAGAATTAG
1 -AATCAGAATCAGAATTAGGTGACAGAATCAA
* *
77847245 AATCAGAATCA-ATATCAGGTAACAGAATCAA
1 AATCAGAATCAGA-ATTAGGTGACAGAATCAA
77847276 AATCAGAAT
1 AATCAGAAT
77847285 GTGAATGCAA
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
30 1 0.02
31 34 0.54
34 1 0.02
37 27 0.43
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGAATTAGGTGACAGAATCAA
Found at i:77847284 original size:37 final size:37
Alignment explanation
Indices: 77847163--77847284 Score: 141
Period size: 37 Copynumber: 3.5 Consensus size: 37
77847153 TATCAGAACT
* * *
77847163 AGAAACAAAATGAGAATCAAAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGAATTAGGTGAC
77847200 AGAATCAAAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGAATTAGGTGAC
* *
77847237 AGAAT-----T-AGAATCAGAATCA-ATATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGA-ATTAGGTGAC
77847268 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
77847285 GTGAATGCAA
Statistics
Matches: 73, Mismatches: 5, Indels: 14
0.79 0.05 0.15
Matches are distributed among these distances:
30 1 0.01
31 26 0.36
32 1 0.01
36 1 0.01
37 44 0.60
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (37 bp):
AGAATCAAAATCAGAATCAGAATCAGAATTAGGTGAC
Found at i:77847451 original size:27 final size:26
Alignment explanation
Indices: 77847403--77847462 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
77847393 GCGAGGCTGC
*
77847403 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
77847430 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
77847456 CAGATAT
1 CAGATAT
77847463 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:77850378 original size:6 final size:6
Alignment explanation
Indices: 77850343--77850473 Score: 81
Period size: 6 Copynumber: 21.3 Consensus size: 6
77850333 AAGAAACATT
* * * *
77850343 ATCAGA A-CTAGA ATCAAA ATGAGG ATCAGA ATCAGA ATCAGGTG AT-AGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* * * *
77850392 ATCAAA ATCAGA ATCAGA ATCAGA ATTAGGTG AT-AGA ATTAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
* *
77850441 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
77850474 GTGAATGCAA
Statistics
Matches: 96, Mismatches: 18, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
5 7 0.07
6 76 0.79
7 8 0.08
8 5 0.05
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:77850392 original size:37 final size:37
Alignment explanation
Indices: 77850351--77850473 Score: 150
Period size: 37 Copynumber: 3.5 Consensus size: 37
77850341 TTATCAGAAC
* *
77850351 TAGAATCAAAATGAGGATCAGAATCAGAATCAGGTGA
1 TAGAATCAAAATCAGAATCAGAATCAGAATCAGGTGA
*
77850388 TAGAATCAAAATCAGAATCAGAATCAGAATTAGGTGA
1 TAGAATCAAAATCAGAATCAGAATCAGAATCAGGTGA
* *
77850425 TAGAAT-----T-AGAATCAGAATCAGTATCAGGTAA
1 TAGAATCAAAATCAGAATCAGAATCAGAATCAGGTGA
*
77850456 CAGAATCAAAATCAGAAT
1 TAGAATCAAAATCAGAAT
77850474 GTGAATGCAA
Statistics
Matches: 73, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
31 26 0.36
32 1 0.01
36 1 0.01
37 45 0.62
ACGTcount: A:0.48, C:0.11, G:0.20, T:0.21
Consensus pattern (37 bp):
TAGAATCAAAATCAGAATCAGAATCAGAATCAGGTGA
Found at i:77850404 original size:31 final size:31
Alignment explanation
Indices: 77850367--77850473 Score: 115
Period size: 31 Copynumber: 3.3 Consensus size: 31
77850357 CAAAATGAGG
77850367 ATCAGAATCAGAATCAGGTGATAGAATCAAA
1 ATCAGAATCAGAATCAGGTGATAGAATCAAA
* *
77850398 ATCAGAATCAGAATCAGAATTAGGTGATAGAATTAGA
1 ATCAGAATCAGAATC------AGGTGATAGAATCAAA
* * *
77850435 ATCAGAATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGAATCAGGTGATAGAATCAAA
77850466 ATCAGAAT
1 ATCAGAAT
77850474 GTGAATGCAA
Statistics
Matches: 63, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
31 35 0.56
37 28 0.44
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (31 bp):
ATCAGAATCAGAATCAGGTGATAGAATCAAA
Found at i:77851314 original size:26 final size:27
Alignment explanation
Indices: 77851270--77851376 Score: 119
Period size: 27 Copynumber: 4.0 Consensus size: 27
77851260 GGGCAAAATA
* *
77851270 GTAATTTTACCC-AC-GAGGGTATCTCG
1 GTAATTCTACCCTACAG-GGGTATTTCG
**
77851296 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCG
*
77851323 GTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* * *
77851350 GTAATTCTACCTTACAAGGGCATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
77851377 AAAATTTTAC
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
26 11 0.16
27 58 0.83
28 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCG
Found at i:77851376 original size:27 final size:27
Alignment explanation
Indices: 77851286--77851376 Score: 128
Period size: 27 Copynumber: 3.4 Consensus size: 27
77851276 TTACCCACGA
* *
77851286 GGGTATCTCGGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCTTACAG
**
77851313 GGGTATTTTAGTAATTCTACCTTACAG
1 GGGTATTTCGGTAATTCTACCTTACAG
*
77851340 GGGTATTTCGGTAATTCTACCTTACAA
1 GGGTATTTCGGTAATTCTACCTTACAG
*
77851367 GGGCATTTCG
1 GGGTATTTCG
77851377 AAAATTTTAC
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (27 bp):
GGGTATTTCGGTAATTCTACCTTACAG
Found at i:77851382 original size:27 final size:27
Alignment explanation
Indices: 77851325--77851382 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
77851315 GTATTTTAGT
* * **
77851325 AATTCTACCTTACAGGGGTATTTCGGT
1 AATTCTACCTTACAAGGGCATTTCGAA
77851352 AATTCTACCTTACAAGGGCATTTCGAA
1 AATTCTACCTTACAAGGGCATTTCGAA
77851379 AATT
1 AATT
77851383 TTACAAATCA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34
Consensus pattern (27 bp):
AATTCTACCTTACAAGGGCATTTCGAA
Found at i:77851401 original size:27 final size:27
Alignment explanation
Indices: 77851371--77851428 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
77851361 TTACAAGGGC
77851371 ATTTCGAAAATTTTACAAA-TCAGGGGT
1 ATTTCGAAAATTTTACAAACT-AGGGGT
* **
77851398 ATTTTGGTAATTTTACAAACTAGGGGT
1 ATTTCGAAAATTTTACAAACTAGGGGT
77851425 ATTT
1 ATTT
77851429 TGGTAATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 26 0.96
28 1 0.04
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
ATTTCGAAAATTTTACAAACTAGGGGT
Found at i:77851429 original size:27 final size:26
Alignment explanation
Indices: 77851379--77851464 Score: 109
Period size: 27 Copynumber: 3.2 Consensus size: 26
77851369 GCATTTCGAA
77851379 AATTTTACAAATCAGGGGTATTTTGGT
1 AATTTTACAAAT-AGGGGTATTTTGGT
77851406 AATTTTACAAACTAGGGGTATTTTGGT
1 AATTTTACAAA-TAGGGGTATTTTGGT
* * * *
77851433 AATTTTTCTAATCGAGGGTATTTTTGT
1 AATTTTACAAATAG-GGGTATTTTGGT
77851460 AATTT
1 AATTT
77851465 GGTAAACTAA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 2 0.04
27 50 0.94
28 1 0.02
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.45
Consensus pattern (26 bp):
AATTTTACAAATAGGGGTATTTTGGT
Found at i:77859021 original size:40 final size:40
Alignment explanation
Indices: 77858977--77859204 Score: 388
Period size: 40 Copynumber: 5.7 Consensus size: 40
77858967 GCTACTTGCT
77858977 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
77859017 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
77859057 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
77859097 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
77859137 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
77859176 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
77859205 CATCCGAATA
Statistics
Matches: 178, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
38 1 0.01
39 34 0.19
40 142 0.80
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:77861523 original size:20 final size:21
Alignment explanation
Indices: 77861483--77861524 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
77861473 GCATCTTTAA
77861483 TCAAATCAACTCCGAAAATTT
1 TCAAATCAACTCCGAAAATTT
77861504 TCAAATCAACTCCG-AAATTT
1 TCAAATCAACTCCGAAAATTT
77861524 T
1 T
77861525 ACTTTCACCG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.40, C:0.24, G:0.05, T:0.31
Consensus pattern (21 bp):
TCAAATCAACTCCGAAAATTT
Found at i:77867161 original size:40 final size:40
Alignment explanation
Indices: 77867117--77867344 Score: 379
Period size: 40 Copynumber: 5.7 Consensus size: 40
77867107 GCTACTTGCT
77867117 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
77867157 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
77867197 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
77867237 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
77867277 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
77867316 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
77867345 CATCCGAATA
Statistics
Matches: 176, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
38 1 0.01
39 34 0.19
40 140 0.80
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:77867216 original size:80 final size:80
Alignment explanation
Indices: 77867084--77867340 Score: 405
Period size: 80 Copynumber: 3.2 Consensus size: 80
77867074 AAACCAAGTA
* * * *
77867084 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
*
77867147 GTAACTCGCACAAATG
65 GTAACTAGCACAAATG
77867163 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
77867228 TAACTAGCACAAATG
66 TAACTAGCACAAATG
*
77867243 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGG-AATTA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TA
*
77867306 GTCACTAGCACAAATG
65 GTAACTAGCACAAATG
77867322 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77867341 TTATCATCCG
Statistics
Matches: 168, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
78 1 0.01
79 59 0.35
80 108 0.64
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTAGCACAAATG
Found at i:77869241 original size:21 final size:21
Alignment explanation
Indices: 77869211--77869257 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
77869201 CGTTACACGG
*
77869211 TGTTGTGACACAGGCTTGCAA
1 TGTTGCGACACAGGCTTGCAA
*
77869232 TGTTGCGACACAGGCTTGCAG
1 TGTTGCGACACAGGCTTGCAA
77869253 TGTTG
1 TGTTG
77869258 TAACATAGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.19, C:0.19, G:0.32, T:0.30
Consensus pattern (21 bp):
TGTTGCGACACAGGCTTGCAA
Found at i:77870199 original size:4 final size:4
Alignment explanation
Indices: 77870168--77870194 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
77870158 TCTCTCTCTC
77870168 TCTA TCTA TCTA TCTA TCTA TCTA TCT
1 TCTA TCTA TCTA TCTA TCTA TCTA TCT
77870195 CTCTCCCCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.26, G:0.00, T:0.52
Consensus pattern (4 bp):
TCTA
Found at i:77884251 original size:5 final size:5
Alignment explanation
Indices: 77884227--77884275 Score: 50
Period size: 5 Copynumber: 10.2 Consensus size: 5
77884217 TGATACGTGG
* *
77884227 GATAT GATAT -ACAT GA-AT GATAT GATAT GCACAT GATAT G-TAT GATAT
1 GATAT GATAT GATAT GATAT GATAT GATAT G-ATAT GATAT GATAT GATAT
77884275 G
1 G
77884276 CACACGATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
4 11 0.30
5 22 0.59
6 4 0.11
ACGTcount: A:0.39, C:0.06, G:0.20, T:0.35
Consensus pattern (5 bp):
GATAT
Found at i:77884262 original size:20 final size:20
Alignment explanation
Indices: 77884229--77884303 Score: 93
Period size: 20 Copynumber: 3.9 Consensus size: 20
77884219 ATACGTGGGA
77884229 TATGATAT--ACATGA-ATG
1 TATGATATGCACATGATATG
77884246 ATATGATATGCACATGATATG
1 -TATGATATGCACATGATATG
*
77884267 TATGATATGCACACGATATG
1 TATGATATGCACATGATATG
* *
77884287 TATGAAATGTACATGAT
1 TATGATATGCACATGAT
77884304 GTAATCATAA
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
18 8 0.16
20 39 0.78
21 3 0.06
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:77884382 original size:26 final size:26
Alignment explanation
Indices: 77884353--77884488 Score: 154
Period size: 26 Copynumber: 5.3 Consensus size: 26
77884343 GAGGAAGTGC
*
77884353 AAAAGGGC-TATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
** * **
77884378 AAAAATGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
77884404 AAAAGGGCTTATGCTCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
77884430 AAAAGGGCTTATGCCCCAATTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
77884456 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
77884479 AAAAGAGGCT
1 AAAAG-GGCT
77884489 AGGCCTCCAG
Statistics
Matches: 94, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
23 5 0.05
24 8 0.09
25 13 0.14
26 68 0.72
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:77885665 original size:43 final size:43
Alignment explanation
Indices: 77885617--77885726 Score: 157
Period size: 43 Copynumber: 2.6 Consensus size: 43
77885607 CTAACATTTC
* * **
77885617 GCCTGCTAGGCTTGAAGCCCGATATCATTTCACTGGCATTATA
1 GCCTGCTAGGCCTGAAGCCCGATATCATCTCACCAGCATTATA
*
77885660 GCCTGCTAGGCCTGAAGCCCGATATTATCTCACCAGCATTATA
1 GCCTGCTAGGCCTGAAGCCCGATATCATCTCACCAGCATTATA
* *
77885703 GCCTACTAGGCCCGAAGCCCGATA
1 GCCTGCTAGGCCTGAAGCCCGATA
77885727 ATATTATTCA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.25
Consensus pattern (43 bp):
GCCTGCTAGGCCTGAAGCCCGATATCATCTCACCAGCATTATA
Found at i:77885766 original size:43 final size:46
Alignment explanation
Indices: 77885652--77885767 Score: 118
Period size: 43 Copynumber: 2.7 Consensus size: 46
77885642 CATTTCACTG
* * *
77885652 GCATTATAGCCTGCTAGGCCTGAAGCCCG---ATATTATCTCACCA
1 GCATTAAAGCCTACTAGGCCCGAAGCCCGATAATATTATCTCACCA
* *
77885695 GCATTATAGCCTACTAGGCCCGAAGCCCGATAATATTAT-TCACTA
1 GCATTAAAGCCTACTAGGCCCGAAGCCCGATAATATTATCTCACCA
* * *
77885740 GC-TTAAAGCTTGCTAGG-CCGAGGCCCGA
1 GCATTAAAGCCTACTAGGCCCGAAGCCCGA
77885768 ATATCACATT
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
43 37 0.59
44 12 0.19
45 7 0.11
46 7 0.11
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (46 bp):
GCATTAAAGCCTACTAGGCCCGAAGCCCGATAATATTATCTCACCA
Found at i:77887673 original size:14 final size:15
Alignment explanation
Indices: 77887644--77887673 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
77887634 AAAAATTTAG
77887644 ACATGATACTTTCAC
1 ACATGATACTTTCAC
77887659 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
77887673 A
1 A
77887674 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:77892372 original size:22 final size:22
Alignment explanation
Indices: 77892329--77892373 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
77892319 CTCTTAGTTC
* *
77892329 TTTAAGTATTATCTTTATGGGT
1 TTTAAGTATTATCTTAACGGGT
77892351 TTTAAGCTATT-TCTTAACGGGT
1 TTTAAG-TATTATCTTAACGGGT
77892373 T
1 T
77892374 CTATCTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.22, C:0.09, G:0.18, T:0.51
Consensus pattern (22 bp):
TTTAAGTATTATCTTAACGGGT
Found at i:77892833 original size:19 final size:17
Alignment explanation
Indices: 77892809--77892852 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
77892799 TAGGCCACGT
*
77892809 TGGGCCGAACTGGACTGTG
1 TGGGCCCAA-TGGACT-TG
*
77892828 TGGGCCCAATGGGCTTG
1 TGGGCCCAATGGACTTG
77892845 TGGGCCCA
1 TGGGCCCA
77892853 CACGGATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 10 0.43
18 5 0.22
19 8 0.35
ACGTcount: A:0.14, C:0.25, G:0.41, T:0.20
Consensus pattern (17 bp):
TGGGCCCAATGGACTTG
Found at i:77893379 original size:54 final size:53
Alignment explanation
Indices: 77893299--77893438 Score: 147
Period size: 54 Copynumber: 2.6 Consensus size: 53
77893289 TCGTTAAGAC
* * *
77893299 CCCCGATTTGTAAAATTACTGAAATACCCCTGACTTATAAAATTAGTGAAATA
1 CCCCTATTTGTAAAATTACCGAAATACCCCTGACTTACAAAATTAGTGAAATA
* * * *
77893352 CCCCTAATTTGTAAAATTACCGAAATA-CCCTCGATTTGCGAAATTATTGAAATA
1 CCCCT-ATTTGTAAAATTACCGAAATACCCCT-GACTTACAAAATTAGTGAAATA
** **
77893406 CCCCTATAGGGTAGGATTACCGAAATACCCCTG
1 CCCCTAT-TTGTAAAATTACCGAAATACCCCTG
77893439 TAGCGTAGGA
Statistics
Matches: 72, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
53 10 0.14
54 58 0.81
55 4 0.06
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.29
Consensus pattern (53 bp):
CCCCTATTTGTAAAATTACCGAAATACCCCTGACTTACAAAATTAGTGAAATA
Found at i:77893388 original size:27 final size:27
Alignment explanation
Indices: 77893297--77893410 Score: 131
Period size: 27 Copynumber: 4.2 Consensus size: 27
77893287 GGTCGTTAAG
*
77893297 ACCCCCGATTTGTAAAATTACTGAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
* * *
77893324 ACCCCTGACTTATAAAATTAGTGAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
* *
77893351 ACCCCTAATTTGTAAAATTACCGAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
** *
77893378 A-CCCTCGATTTGCGAAATTATTGAAAT
1 ACCCCT-GATTTGTAAAATTACTGAAAT
77893405 ACCCCT
1 ACCCCT
77893411 ATAGGGTAGG
Statistics
Matches: 71, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
26 4 0.06
27 63 0.89
28 4 0.06
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.30
Consensus pattern (27 bp):
ACCCCTGATTTGTAAAATTACTGAAAT
Found at i:77893424 original size:27 final size:27
Alignment explanation
Indices: 77893400--77893499 Score: 137
Period size: 27 Copynumber: 3.7 Consensus size: 27
77893390 CGAAATTATT
77893400 GAAATACCCCTATAGGGTAGGATTACC
1 GAAATACCCCTATAGGGTAGGATTACC
* * *
77893427 GAAATACCCCTGTAGCGTAGGATTATC
1 GAAATACCCCTATAGGGTAGGATTACC
* *
77893454 GAAATACCCTTGTAGGGTAGGATTACC
1 GAAATACCCCTATAGGGTAGGATTACC
* *
77893481 GAAATACCCTTATATGGTA
1 GAAATACCCCTATAGGGTA
77893500 AAATGCCCAT
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 65 1.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (27 bp):
GAAATACCCCTATAGGGTAGGATTACC
Found at i:77900291 original size:79 final size:82
Alignment explanation
Indices: 77900147--77900331 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 82
77900137 GCTACTCGTT
* * * *
77900147 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTTGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTTCGGACTTAACCCG
* * *
77900211 GATTTAGTAAC-TCGCG
66 GATATAGTAACTTAGCA
* **
77900227 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCC-TTCGGATCTTAGTCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTTCGGA-CTTAACCC
* *
77900289 GGATATGGTCACTTAGCA
65 GGATATAGTAACTTAGCA
77900307 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77900332 CATCATTCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 5 0.06
79 51 0.57
80 33 0.37
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTTCGGACTTAACCCG
GATATAGTAACTTAGCA
Found at i:77900331 original size:40 final size:40
Alignment explanation
Indices: 77900128--77900331 Score: 211
Period size: 40 Copynumber: 5.1 Consensus size: 40
77900118 CGGAATTTAA
** *
77900128 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
77900168 CCGGTTATAGTAACTCGCACAATTGCCTTTGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77900208 CCGGATTTAGTAACTCGCGCAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77900247 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
77900287 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
77900327 CCGGA
1 CCGGA
77900332 CATCATTCAA
Statistics
Matches: 135, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.24
40 89 0.66
41 12 0.09
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:77902041 original size:39 final size:39
Alignment explanation
Indices: 77901928--77902041 Score: 165
Period size: 39 Copynumber: 2.9 Consensus size: 39
77901918 GGGCTGTCAC
*
77901928 ACATGAGGTCCGCAGGCTATATGCTAGAAAATTATCCAG
1 ACATGAGGTCCGCAGGCTATATGCTAGAAAAATATCCAG
* *
77901967 ACATGAGGTCCGCAGGCTATATGCTAGAAATATATCCGG
1 ACATGAGGTCCGCAGGCTATATGCTAGAAAAATATCCAG
* ** *
77902006 ACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATC
1 ACATGAGGTCCGCAGGCTATATGCTAGAAAAATATC
77902042 TGGGTTAAAG
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (39 bp):
ACATGAGGTCCGCAGGCTATATGCTAGAAAAATATCCAG
Found at i:77909966 original size:39 final size:39
Alignment explanation
Indices: 77909922--77910046 Score: 189
Period size: 39 Copynumber: 3.2 Consensus size: 39
77909912 TATGAGATTG
77909922 AAAATATCCAGACATGAGGTCCGCAGGCTATATGCTAGA
1 AAAATATCCAGACATGAGGTCCGCAGGCTATATGCTAGA
77909961 AAAATATCCAGACATGAGGTCCGCAGGCTATATGCTAGA
1 AAAATATCCAGACATGAGGTCCGCAGGCTATATGCTAGA
* * * ** *
77910000 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCT-GG
1 AAAATATCCAGACATGAGGTCCGCAGGCTATATGCTAGA
77910038 AAAATATCC
1 AAAATATCC
77910047 GGGTTAAAGA
Statistics
Matches: 79, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
38 9 0.11
39 70 0.89
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.22
Consensus pattern (39 bp):
AAAATATCCAGACATGAGGTCCGCAGGCTATATGCTAGA
Found at i:77912382 original size:15 final size:13
Alignment explanation
Indices: 77912347--77912378 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
77912337 ACCATGGCAT
*
77912347 CGATATGTTACTC
1 CGATATGTGACTC
77912360 CGATATGTGACTC
1 CGATATGTGACTC
77912373 CGATAT
1 CGATAT
77912379 ATGTTTGTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (13 bp):
CGATATGTGACTC
Found at i:77912802 original size:250 final size:250
Alignment explanation
Indices: 77912502--77913727 Score: 2434
Period size: 250 Copynumber: 4.9 Consensus size: 250
77912492 CCAATTCCGA
77912502 ATGGTTCAACGGGCAAAGATAAGTTTTGTATGAATGTATAAATCAAGCTAAGTGACCAGGTATGT
1 ATGGTTCAACGGGCAAAGATAAGTTTTGTATGAATGTATAAATCAAGCTAAGTGACCAGGTATGT
77912567 GATAGTTGATTACCTATTTGAAAATAAGGTAAGTTGATTATTTGATATGTGATACAAACATATGT
66 GATAGTTGATTACCTATTTGAAAATAAGGTAAGTTGATTATTTGATATGTGATACAAACATATGT
77912632 TTGATGTTAGTTTGAATTTGTGAGCAATTGTGAAGTATATTCAGCCATAATTTAAGTGTAATTAT
131 TTGATGTTAGTTTGAATTTGTGAGCAATTGTGAAGTATATTCAGCCATAATTTAAGTGTAATTAT
77912697 ATGGTATTAAGGTTTGGTACATGAGTATATGTAAACAAGTGTTTAAAGATTCGGT
196 ATGGTATTAAGGTTTGGTACATGAGTATATGTAAACAAGTGTTTAAAGATTCGGT
77912752 ATGGTTCAACGGGCAAAGATAAGTTTTGTATGAATGTATAAATCAAGCTAAGTGACCAGGTATGT
1 ATGGTTCAACGGGCAAAGATAAGTTTTGTATGAATGTATAAATCAAGCTAAGTGACCAGGTATGT
77912817 GATAGTTGATTACCTATTTGAAAATAAGGTAAGTTGATTATTTGATATGTGATACAAACATATGT
66 GATAGTTGATTACCTATTTGAAAATAAGGTAAGTTGATTATTTGATATGTGATACAAACATATGT
77912882 TTGATGTTAGTTTGAATTTGTGAGCAATTGTGAAGTATATTCAGCCATAATTTAAGTGTAATTAT
131 TTGATGTTAGTTTGAATTTGTGAGCAATTGTGAAGTATATTCAGCCATAATTTAAGTGTAATTAT
77912947 ATGGTATTAAGGTTTGGTACATGAGTATATGTAAACAAGTGTTTAAAGATTCGGT
196 ATGGTATTAAGGTTTGGTACATGAGTATATGTAAACAAGTGTTTAAAGATTCGGT
77913002 ATGGTTCAACGGGCAAAGATAAGTTTTGTATGAATGTATAAATCAAGCTAAGTGACCAGGTATGT
1 ATGGTTCAACGGGCAAAGATAAGTTTTGTATGAATGTATAAATCAAGCTAAGTGACCAGGTATGT
*
77913067 GATAGTTGATTACCTATTTGAAAATAAGGTAAGTTGATTATTTGATATGTGATACAAATATATGT
66 GATAGTTGATTACCTATTTGAAAATAAGGTAAGTTGATTATTTGATATGTGATACAAACATATGT
77913132 TTGATGTTAGTTTGAATTTGTGAGCAATTGTGAAGTATATTCAGCCATAATTTAAGTGTAATTAT
131 TTGATGTTAGTTTGAATTTGTGAGCAATTGTGAAGTATATTCAGCCATAATTTAAGTGTAATTAT
77913197 ATGGTATTAAGGTTTGGTACATGAGTATATGTAAACAAGTGTTTAAAGATTCGGT
196 ATGGTATTAAGGTTTGGTACATGAGTATATGTAAACAAGTGTTTAAAGATTCGGT
*
77913252 ATGGTTCAACGGGCAAAGATAAGTTTTGTATGAATGTATAAACCAAGCTAAGTGACCAGGTATGT
1 ATGGTTCAACGGGCAAAGATAAGTTTTGTATGAATGTATAAATCAAGCTAAGTGACCAGGTATGT
77913317 GATAGTTGATTACCTATTTGAAAATAAGGTAAGTTGATTATTTGATATGTGATACAAACATATGT
66 GATAGTTGATTACCTATTTGAAAATAAGGTAAGTTGATTATTTGATATGTGATACAAACATATGT
77913382 TTGATGTTAGTTTGAATTTGTGAGCAATTGTGAAGTATATTCAGCCATAATTTAAGTGTAATTAT
131 TTGATGTTAGTTTGAATTTGTGAGCAATTGTGAAGTATATTCAGCCATAATTTAAGTGTAATTAT
77913447 ATGGTATTAAGGTTTGGTACATGAGTATATGTAAACAAGTGTTTAAAGATTCGGT
196 ATGGTATTAAGGTTTGGTACATGAGTATATGTAAACAAGTGTTTAAAGATTCGGT
77913502 ATGGTTCAACGGGCAAAGATAAGTTTTGTATGAATGTATAAATCAAGCTAAGTGACCAGGTATGT
1 ATGGTTCAACGGGCAAAGATAAGTTTTGTATGAATGTATAAATCAAGCTAAGTGACCAGGTATGT
77913567 GATAGTTGATTACCTATTTGAAAATAAGGTAAGTTGATTATTTGATATGTGATACAAACATATGT
66 GATAGTTGATTACCTATTTGAAAATAAGGTAAGTTGATTATTTGATATGTGATACAAACATATGT
77913632 TTGATGTTAGTTTGAATTTGTGAGCAATTGTGAAGTATATTCAGCCATAATTTAAGTGTAATTAT
131 TTGATGTTAGTTTGAATTTGTGAGCAATTGTGAAGTATATTCAGCCATAATTTAAGTGTAATTAT
77913697 ATGGTATTAAGGTTTGGTACATGAGTATATG
196 ATGGTATTAAGGTTTGGTACATGAGTATATG
77913728 ATTTTAATAG
Statistics
Matches: 972, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
250 972 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.37
Consensus pattern (250 bp):
ATGGTTCAACGGGCAAAGATAAGTTTTGTATGAATGTATAAATCAAGCTAAGTGACCAGGTATGT
GATAGTTGATTACCTATTTGAAAATAAGGTAAGTTGATTATTTGATATGTGATACAAACATATGT
TTGATGTTAGTTTGAATTTGTGAGCAATTGTGAAGTATATTCAGCCATAATTTAAGTGTAATTAT
ATGGTATTAAGGTTTGGTACATGAGTATATGTAAACAAGTGTTTAAAGATTCGGT
Found at i:77920436 original size:37 final size:37
Alignment explanation
Indices: 77920386--77920464 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
77920376 TTATTACGAA
* * *
77920386 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
77920423 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
77920460 GTCTT
1 GTCTT
77920465 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:77920720 original size:22 final size:22
Alignment explanation
Indices: 77920692--77920765 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
77920682 TTTCACATCC
77920692 ATCACATCGGCCATTAGGCATT
1 ATCACATCGGCCATTAGGCATT
*** *
77920714 ATCACATATACACTTTCA--CATT
1 ATCACATCGGC-CATT-AGGCATT
*
77920736 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCATT
77920759 ATCACAT
1 ATCACAT
77920766 ATATACACTT
Statistics
Matches: 38, Mismatches: 9, Indels: 10
0.67 0.16 0.18
Matches are distributed among these distances:
21 1 0.03
22 22 0.58
23 14 0.37
24 1 0.03
ACGTcount: A:0.30, C:0.30, G:0.11, T:0.30
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCATT
Found at i:77920755 original size:94 final size:93
Alignment explanation
Indices: 77920581--77920802 Score: 347
Period size: 94 Copynumber: 2.3 Consensus size: 93
77920571 GCCCTTCGGG
*
77920581 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCACTATCAC--A-ATATACACTTTCACATTCATC
77920646 ACATCGGCCATTAGGCCCTATCACATATATATAC
62 ACATCGGCCATTAGGCCCTATCAC--ATATATAC
* *
77920680 ACTTTCACATCCATCACATCGGCCATTAGGCATTATCAC-ATATACACTTTCACATTCATCACAT
1 ACTTTCACATTCATCACATCGGCCATTAGGCACTATCACAATATACACTTTCACATTCATCACAT
*
77920744 CGGCCATTAGGCCTTATCACATATATAC
66 CGGCCATTAGGCCCTATCACATATATAC
77920772 ACTTTCACATTCATCACATCGGCCATTAGGC
1 ACTTTCACATTCATCACATCGGCCATTAGGC
77920803 CATACTATCA
Statistics
Matches: 118, Mismatches: 5, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
92 38 0.32
94 44 0.37
98 32 0.27
99 4 0.03
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (93 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCACTATCACAATATACACTTTCACATTCATCACAT
CGGCCATTAGGCCCTATCACATATATAC
Found at i:77920788 original size:47 final size:48
Alignment explanation
Indices: 77920581--77920803 Score: 355
Period size: 49 Copynumber: 4.7 Consensus size: 48
77920571 GCCCTTCGGG
77920581 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATAC
77920631 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATAC
* **
77920680 ACTTTCACATCCATCACATCGGCCATTAGGCATTATCAC---ATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATAC
*
77920725 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATAC
77920772 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
77920804 ATACTATCAT
Statistics
Matches: 166, Mismatches: 5, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
45 43 0.26
47 38 0.23
49 81 0.49
50 4 0.02
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (48 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATAC
Found at i:77948206 original size:16 final size:14
Alignment explanation
Indices: 77948176--77948223 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 14
77948166 TAAAAAATTT
77948176 AAAAAGAAA-GAAA
1 AAAAAGAAATGAAA
77948189 AAAATGAGAAATGAAA
1 AAAA--AGAAATGAAA
77948205 AAAAAGAAACTGAAA
1 AAAAAGAAA-TGAAA
77948220 AAAA
1 AAAA
77948224 CATTTTTGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
13 4 0.13
14 5 0.16
15 14 0.45
16 8 0.26
ACGTcount: A:0.77, C:0.02, G:0.15, T:0.06
Consensus pattern (14 bp):
AAAAAGAAATGAAA
Found at i:77953195 original size:64 final size:64
Alignment explanation
Indices: 77953115--77953298 Score: 187
Period size: 67 Copynumber: 2.8 Consensus size: 64
77953105 AGACATTATG
* * * *
77953115 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGTTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
77953179 ATGTAGCTAGGTCGCATGCGTGGT-TTCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGTGGTACT-A--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
77953243 TAA
62 TAA
* * *
77953246 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
77953299 CAAAATTATG
Statistics
Matches: 98, Mismatches: 15, Indels: 15
0.77 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 20 0.20
64 24 0.24
66 20 0.20
67 31 0.32
68 2 0.02
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:77961862 original size:29 final size:29
Alignment explanation
Indices: 77961827--77961900 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
77961817 GTTGTGAGAT
* *
77961827 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
77961856 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
77961885 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
77961901 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:77964953 original size:47 final size:48
Alignment explanation
Indices: 77964884--77965101 Score: 202
Period size: 47 Copynumber: 4.6 Consensus size: 48
77964874 GGTAAGGTGC
77964884 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCAT-ATCTC-AAGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGC-CATCATCTCGAAGT
* * * *
77964931 CGATGCCATGTCCCAAATATGGTCTTACACTGACCATCATCTCGTAGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCCATCATCTCGAAGT
* * * * * *
77964979 CAATG-TATGTCCCAAACAT-GTCTTACATTGGCTAACATCTCGAGGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCCATCATCTCGAAGT
* * * *
77965025 TGATG-CATGTCTCAGACAT-GTCTTACACTAG-CAGTCATCTC--AGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCCA-TCATCTCGAAGT
*
77965069 GCCGATGCCATGTCCCAGACATGGTCTTACACT
1 --CGATGCCATGTCCCAAACATGGTCTTACACT
77965102 AGCTTCCATA
Statistics
Matches: 138, Mismatches: 26, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
44 2 0.01
45 1 0.01
46 57 0.41
47 62 0.45
48 16 0.12
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCCATCATCTCGAAGT
Found at i:77965082 original size:93 final size:94
Alignment explanation
Indices: 77964880--77965101 Score: 265
Period size: 93 Copynumber: 2.4 Consensus size: 94
77964870 TATGGGTAAG
* *
77964880 GTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCC
1 GTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTAACATCTCAAGTCGATGCCATGTCCC
*
77964945 AAATATGGTCTTACACTGACCATCATCTC
66 AAACATGGTCTTACACTGACCATCATCTC
* * * * *
77964974 GTAGCCAATG-TATGTCCCAAACAT-GTCTTACATTGGCTAACATCTCGAGGTTGATG-CATGTC
1 GT-GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTAACATCTC-AAGTCGATGCCATGTC
* * *
77965036 TCAGACAT-GTCTTACACT-AGCAGTCATCTC
64 CCAAACATGGTCTTACACTGACCA-TCATCTC
*
77965066 AGTGCCGATGCCATGTCCCAGACATGGTCTTACACT
1 -GTGCCGATGCCATGTCCCAAACATGGTCTTACACT
77965102 AGCTTCCATA
Statistics
Matches: 107, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
91 3 0.03
92 23 0.21
93 44 0.41
94 31 0.29
95 6 0.06
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (94 bp):
GTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTAACATCTCAAGTCGATGCCATGTCCC
AAACATGGTCTTACACTGACCATCATCTC
Found at i:77965128 original size:47 final size:46
Alignment explanation
Indices: 77964880--77965151 Score: 159
Period size: 47 Copynumber: 5.8 Consensus size: 46
77964870 TATGGGTAAG
* *
77964880 GTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGC--TCATATCTCAA
1 GTGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCAGTCATA--TC-A
* * * *
77964929 GT--CGATGCCATGTCCCAAATATGGTCTTACACTGACCA-TCATCTC-
1 GTGCCGATG-CATGTCCCAGACAT-GTCTTACACT-AGCAGTCATATCA
* * * * * * *
77964974 GTAGCCAATGTATGTCCCAAACATGTCTTACATTGGCTA-ACATCTCGA
1 GT-GCCGATGCATGTCCCAGACATGTCTTACACTAGC-AGTCATATC-A
** * *
77965022 G-GTTGATGCATGTCTCAGACATGTCTTACACTAGCAGTCATCTCA
1 GTGCCGATGCATGTCCCAGACATGTCTTACACTAGCAGTCATATCA
* *
77965067 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGC-TTCCATAAT-T
1 GTGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCAGT-CAT-ATCA
*
77965115 TTGCCGATGCATGTCCCAGACATGTCTTACACTAGCA
1 GTGCCGATGCATGTCCCAGACATGTCTTACACTAGCA
77965152 CACACAAGTG
Statistics
Matches: 181, Mismatches: 27, Indels: 32
0.75 0.11 0.13
Matches are distributed among these distances:
45 6 0.03
46 66 0.36
47 72 0.40
48 30 0.17
49 7 0.04
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (46 bp):
GTGCCGATGCATGTCCCAGACATGTCTTACACTAGCAGTCATATCA
Found at i:77971283 original size:29 final size:29
Alignment explanation
Indices: 77971241--77971299 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
77971231 CCCAAAATAT
77971241 ACTTAGAAACCAATTCAGAATCAATCCTG
1 ACTTAGAAACCAATTCAGAATCAATCCTG
77971270 ACTTAGAAACCAATTCAGAATCAATCCTG
1 ACTTAGAAACCAATTCAGAATCAATCCTG
77971299 A
1 A
77971300 TCTCTTAAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.42, C:0.24, G:0.10, T:0.24
Consensus pattern (29 bp):
ACTTAGAAACCAATTCAGAATCAATCCTG
Found at i:77984939 original size:13 final size:13
Alignment explanation
Indices: 77984917--77984949 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
77984907 AAGGGTTTGT
77984917 TTAT-TAAACTAA
1 TTATCTAAACTAA
77984929 TTATCTAAACTAA
1 TTATCTAAACTAA
*
77984942 TTAACTAA
1 TTATCTAA
77984950 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:77987895 original size:6 final size:6
Alignment explanation
Indices: 77987880--77987931 Score: 68
Period size: 6 Copynumber: 8.7 Consensus size: 6
77987870 AAGTGAAACG
* * * *
77987880 AAAAGA AAAATC AAAAGA AAAATA AAAATA AAAATA AAAATA AGAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
77987928 AAAA
1 AAAA
77987932 AATATAAAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.81, C:0.02, G:0.06, T:0.12
Consensus pattern (6 bp):
AAAATA
Found at i:77987895 original size:12 final size:11
Alignment explanation
Indices: 77987880--77987940 Score: 54
Period size: 12 Copynumber: 5.4 Consensus size: 11
77987870 AAGTGAAACG
77987880 AAAAGAAAAAT
1 AAAAGAAAAAT
77987891 CAAAAGAAAAAT
1 -AAAAGAAAAAT
*
77987903 AAAAATAAAAAT
1 -AAAAGAAAAAT
77987915 AAAA-ATAAGAAT
1 AAAAGA-AA-AAT
*
77987927 AAAA-AAATAT
1 AAAAGAAAAAT
77987937 AAAA
1 AAAA
77987941 TAGGAAGATT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
10 7 0.16
11 8 0.18
12 29 0.66
ACGTcount: A:0.80, C:0.02, G:0.05, T:0.13
Consensus pattern (11 bp):
AAAAGAAAAAT
Found at i:77997192 original size:7 final size:7
Alignment explanation
Indices: 77997182--77997214 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
77997172 ACTTCCGACT
77997182 TTTAGGG
1 TTTAGGG
77997189 TTTAGGG
1 TTTAGGG
77997196 TTTAGGG
1 TTTAGGG
77997203 TTTAGGG
1 TTTAGGG
77997210 TTTAG
1 TTTAG
77997215 AAGCATTCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.15, C:0.00, G:0.39, T:0.45
Consensus pattern (7 bp):
TTTAGGG
Found at i:77999295 original size:28 final size:28
Alignment explanation
Indices: 77999259--77999337 Score: 131
Period size: 28 Copynumber: 2.8 Consensus size: 28
77999249 GAATCATTCG
*
77999259 ATATTTCACATACTAAGTGCCATTCTCA
1 ATATTTCACACACTAAGTGCCATTCTCA
* *
77999287 ATATCTCACACACTATGTGCCATTCTCA
1 ATATTTCACACACTAAGTGCCATTCTCA
77999315 ATATTTCACACACTAAGTGCCAT
1 ATATTTCACACACTAAGTGCCAT
77999338 ATTTGATGTC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.33
Consensus pattern (28 bp):
ATATTTCACACACTAAGTGCCATTCTCA
Found at i:77999412 original size:40 final size:40
Alignment explanation
Indices: 77999368--77999454 Score: 140
Period size: 40 Copynumber: 2.2 Consensus size: 40
77999358 GTGTTGTACA
*
77999368 TAGCCGAAGCTAT-CTCAAATCGCACACTAAGTGCCAAATT
1 TAGCCGAAGCTATAC-CAAACCGCACACTAAGTGCCAAATT
*
77999408 TAGCCGAAGCTATACCAAACCGCACACTAAGTGCCATATT
1 TAGCCGAAGCTATACCAAACCGCACACTAAGTGCCAAATT
77999448 TAGCCGA
1 TAGCCGA
77999455 TATGTCATCA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
40 43 0.98
41 1 0.02
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (40 bp):
TAGCCGAAGCTATACCAAACCGCACACTAAGTGCCAAATT
Found at i:78003156 original size:34 final size:34
Alignment explanation
Indices: 78003118--78003186 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
78003108 TTCTTATTCA
78003118 AGGGTACCCATTAGGGCATTTAATTAAGGAACAC
1 AGGGTACCCATTAGGGCATTTAATTAAGGAACAC
*
78003152 AGGGTACCTATTAGGGCATTTAATTAAGGAACAC
1 AGGGTACCCATTAGGGCATTTAATTAAGGAACAC
78003186 A
1 A
78003187 CTCTCGATCC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (34 bp):
AGGGTACCCATTAGGGCATTTAATTAAGGAACAC
Found at i:78026421 original size:946 final size:946
Alignment explanation
Indices: 78024590--78026462 Score: 3737
Period size: 946 Copynumber: 2.0 Consensus size: 946
78024580 GGGAATTTCA
78024590 TGTTACCATAGAAGGGAAAAATGTTCATCGTGTCATAAAACATAAGAAAAATGTATAAATTTTAA
1 TGTTACCATAGAAGGGAAAAATGTTCATCGTGTCATAAAACATAAGAAAAATGTATAAATTTTAA
78024655 TTTCTGAGCCTAAGGGCAAAATTGTAATTCTGCAAAGGTTTAAGGGCAAAATTGTAATTTTACAA
66 TTTCTGAGCCTAAGGGCAAAATTGTAATTCTGCAAAGGTTTAAGGGCAAAATTGTAATTTTACAA
78024720 AAGTTTGAGTTAGAGAATGTTTTGGACCTAACTCAAACTTGTAATTAAATAAGTGAAATATGATG
131 AAGTTTGAGTTAGAGAATGTTTTGGACCTAACTCAAACTTGTAATTAAATAAGTGAAATATGATG
78024785 TTCTAGATCCCGGAAAGTGAGATTTGGACCTAGAACGGGAGAAAAATTGAAAATCAGGAAAGTTG
196 TTCTAGATCCCGGAAAGTGAGATTTGGACCTAGAACGGGAGAAAAATTGAAAATCAGGAAAGTTG
78024850 GTAAAATACTCGTTTTGGTATCGAGGTAAGTTCATATGTTTAATAAGCATTTAATGATGCATATT
261 GTAAAATACTCGTTTTGGTATCGAGGTAAGTTCATATGTTTAATAAGCATTTAATGATGCATATT
78024915 TGAATGATAAATTGATATTTTGGCCATATATACTTTAGTATTGAGTTTCAGATATAATGATTAAT
326 TGAATGATAAATTGATATTTTGGCCATATATACTTTAGTATTGAGTTTCAGATATAATGATTAAT
78024980 GTTTGATAATAATTGGATATTGGAAAGAGAACTAGTATAATTTATATGTAAGACCATATTTTGTA
391 GTTTGATAATAATTGGATATTGGAAAGAGAACTAGTATAATTTATATGTAAGACCATATTTTGTA
78025045 TTATGGCTTTGTATGATAACAAGAAAGTATTGACTAGCATAGTTTGATGAAAATAAGTTAAGTTG
456 TTATGGCTTTGTATGATAACAAGAAAGTATTGACTAGCATAGTTTGATGAAAATAAGTTAAGTTG
78025110 ATGATATGATGAGATTGAGAATGTAAGTATGTAAGTTGAGTAGCATTTTATTATTATGCAATTAT
521 ATGATATGATGAGATTGAGAATGTAAGTATGTAAGTTGAGTAGCATTTTATTATTATGCAATTAT
78025175 TGTTATTAGTATTGTTATTATTGAGTTATGCGACTAACCTTGAGAATTTGAGCAAGTATGTTTCA
586 TGTTATTAGTATTGTTATTATTGAGTTATGCGACTAACCTTGAGAATTTGAGCAAGTATGTTTCA
78025240 GCTATGACTTGACAAGGCATTGATATCTCAAAATGCATGGTTTTACCATGGCAATTAAGGAAGGA
651 GCTATGACTTGACAAGGCATTGATATCTCAAAATGCATGGTTTTACCATGGCAATTAAGGAAGGA
78025305 TTGATGGAAAAGTACATGTTCATAACATGGAATTTAAGGAGGAATTGATGGTTAAGGATACCATG
716 TTGATGGAAAAGTACATGTTCATAACATGGAATTTAAGGAGGAATTGATGGTTAAGGATACCATG
78025370 TAAGACCATGTCAAGACATGGCATTGGTAAGGCAAGGATCCAGCGTAAGACCACGTTAAGACATG
781 TAAGACCATGTCAAGACATGGCATTGGTAAGGCAAGGATCCAGCGTAAGACCACGTTAAGACATG
78025435 GCATCAGCATTGATTAAGGACTCCATGTAAGACCACATCAAGATGTGGCATTAGCACTAAGACAA
846 GCATCAGCATTGATTAAGGACTCCATGTAAGACCACATCAAGATGTGGCATTAGCACTAAGACAA
78025500 GGATACCATGTAAGATCGGTAAAAACGAGTAACACG
911 GGATACCATGTAAGATCGGTAAAAACGAGTAACACG
78025536 TGTTACCATAGAAGGGAAAAATGTTCATCGTGTCATAAAACATAAGAAAAATGTATAAATTTTAA
1 TGTTACCATAGAAGGGAAAAATGTTCATCGTGTCATAAAACATAAGAAAAATGTATAAATTTTAA
78025601 TTTCTGAGCCTAAGGGCAAAATTGTAATTCTGCAAAGGTTTAAGGGCAAAATTGTAATTTTACAA
66 TTTCTGAGCCTAAGGGCAAAATTGTAATTCTGCAAAGGTTTAAGGGCAAAATTGTAATTTTACAA
78025666 AAGTTTGAGTTAGAGAATGTTTTGGACCTAACTCAAACTTGTAATTAAATAAGTGAAATATGATG
131 AAGTTTGAGTTAGAGAATGTTTTGGACCTAACTCAAACTTGTAATTAAATAAGTGAAATATGATG
*
78025731 TTTTAGATCCCGGAAAGTGAGATTTGGACCTAGAACGGGAGAAAAATTGAAAATCAGGAAAGTTG
196 TTCTAGATCCCGGAAAGTGAGATTTGGACCTAGAACGGGAGAAAAATTGAAAATCAGGAAAGTTG
78025796 GTAAAATACTCGTTTTGGTATCGAGGTAAGTTCATATGTTTAATAAGCATTTAATGATGCATATT
261 GTAAAATACTCGTTTTGGTATCGAGGTAAGTTCATATGTTTAATAAGCATTTAATGATGCATATT
78025861 TGAATGATAAATTGATATTTTGGCCATATATACTTTAGTATTGAGTTTCAGATATAATGATTAAT
326 TGAATGATAAATTGATATTTTGGCCATATATACTTTAGTATTGAGTTTCAGATATAATGATTAAT
78025926 GTTTGATAATAATTGGATATTGGAAAGAGAACTAGTATAATTTATATGTAAGACCATATTTTGTA
391 GTTTGATAATAATTGGATATTGGAAAGAGAACTAGTATAATTTATATGTAAGACCATATTTTGTA
78025991 TTATGGCTTTGTATGATAACAAGAAAGTATTGACTAGCATAGTTTGATGAAAATAAGTTAAGTTG
456 TTATGGCTTTGTATGATAACAAGAAAGTATTGACTAGCATAGTTTGATGAAAATAAGTTAAGTTG
78026056 ATGATATGATGAGATTGAGAATGTAAGTATGTAAGTTGAGTAGCATTTTATTATTATGCAATTAT
521 ATGATATGATGAGATTGAGAATGTAAGTATGTAAGTTGAGTAGCATTTTATTATTATGCAATTAT
78026121 TGTTATTAGTATTGTTATTATTGAGTTATGCGACTAACCTTGAGAATTTGAGCAAGTATGTTTCA
586 TGTTATTAGTATTGTTATTATTGAGTTATGCGACTAACCTTGAGAATTTGAGCAAGTATGTTTCA
78026186 GCTATGACTTGACAAGGCATTGATATCTCAAAATGCATGGTTTTACCATGGCAATTAAGGAAGGA
651 GCTATGACTTGACAAGGCATTGATATCTCAAAATGCATGGTTTTACCATGGCAATTAAGGAAGGA
78026251 TTGATGGAAAAGTACATGTTCATAACATGGAATTTAAGGAGGAATTGATGGTTAAGGATACCATG
716 TTGATGGAAAAGTACATGTTCATAACATGGAATTTAAGGAGGAATTGATGGTTAAGGATACCATG
78026316 TAAGACCATGTCAAGACATGGCATTGGTAAGGCAAGGATCCAGCGTAAGACCACGTTAAGACATG
781 TAAGACCATGTCAAGACATGGCATTGGTAAGGCAAGGATCCAGCGTAAGACCACGTTAAGACATG
78026381 GCATCAGCATTGATTAAGGACTCCATGTAAGACCACATCAAGATGTGGCATTAGCACTAAGACAA
846 GCATCAGCATTGATTAAGGACTCCATGTAAGACCACATCAAGATGTGGCATTAGCACTAAGACAA
78026446 GGATACCATGTAAGATC
911 GGATACCATGTAAGATC
78026463 ATGTTTGGAA
Statistics
Matches: 926, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
946 926 1.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.32
Consensus pattern (946 bp):
TGTTACCATAGAAGGGAAAAATGTTCATCGTGTCATAAAACATAAGAAAAATGTATAAATTTTAA
TTTCTGAGCCTAAGGGCAAAATTGTAATTCTGCAAAGGTTTAAGGGCAAAATTGTAATTTTACAA
AAGTTTGAGTTAGAGAATGTTTTGGACCTAACTCAAACTTGTAATTAAATAAGTGAAATATGATG
TTCTAGATCCCGGAAAGTGAGATTTGGACCTAGAACGGGAGAAAAATTGAAAATCAGGAAAGTTG
GTAAAATACTCGTTTTGGTATCGAGGTAAGTTCATATGTTTAATAAGCATTTAATGATGCATATT
TGAATGATAAATTGATATTTTGGCCATATATACTTTAGTATTGAGTTTCAGATATAATGATTAAT
GTTTGATAATAATTGGATATTGGAAAGAGAACTAGTATAATTTATATGTAAGACCATATTTTGTA
TTATGGCTTTGTATGATAACAAGAAAGTATTGACTAGCATAGTTTGATGAAAATAAGTTAAGTTG
ATGATATGATGAGATTGAGAATGTAAGTATGTAAGTTGAGTAGCATTTTATTATTATGCAATTAT
TGTTATTAGTATTGTTATTATTGAGTTATGCGACTAACCTTGAGAATTTGAGCAAGTATGTTTCA
GCTATGACTTGACAAGGCATTGATATCTCAAAATGCATGGTTTTACCATGGCAATTAAGGAAGGA
TTGATGGAAAAGTACATGTTCATAACATGGAATTTAAGGAGGAATTGATGGTTAAGGATACCATG
TAAGACCATGTCAAGACATGGCATTGGTAAGGCAAGGATCCAGCGTAAGACCACGTTAAGACATG
GCATCAGCATTGATTAAGGACTCCATGTAAGACCACATCAAGATGTGGCATTAGCACTAAGACAA
GGATACCATGTAAGATCGGTAAAAACGAGTAACACG
Found at i:78026496 original size:47 final size:47
Alignment explanation
Indices: 78026437--78026559 Score: 192
Period size: 47 Copynumber: 2.6 Consensus size: 47
78026427 GGCATTAGCA
*
78026437 CTAAGACAAGGATACCATGTAAGATCATGTTTGGAACATGGCATTTG
1 CTAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTG
*
78026484 GTAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTG
1 CTAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTG
* * * *
78026531 CTAAGATAAGGATATCGTATAAGACCATG
1 CTAAGACAAGGATACCATGTAAGACCATG
78026560 CCAAGGCATG
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.26
Consensus pattern (47 bp):
CTAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTG
Found at i:78026608 original size:54 final size:54
Alignment explanation
Indices: 78026532--78026745 Score: 207
Period size: 54 Copynumber: 4.0 Consensus size: 54
78026522 TGGCATTTGC
* * * * *
78026532 TAAGATAAGGATATCGTATAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
1 TAAGGTAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTA
* * * *
78026586 TAAGGTAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTA
1 TAAGGTAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTA
* * * * * *
78026641 TAAGGAAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGCTC-A
1 TAAGG-TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTA
* * * * * *
78026694 TAAGGCAAGGATACCACGTAAGATCATGTCAAGACATGGCAATGGTAAGTTC
1 TAAGGTAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
78026746 AAAAAGGAAA
Statistics
Matches: 133, Mismatches: 24, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
52 4 0.03
53 39 0.29
54 45 0.34
55 41 0.31
56 4 0.03
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (54 bp):
TAAGGTAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTA
Found at i:78026667 original size:55 final size:54
Alignment explanation
Indices: 78026550--78026734 Score: 212
Period size: 55 Copynumber: 3.4 Consensus size: 54
78026540 GGATATCGTA
* * * * *
78026550 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGTAAGGAAATCATG
1 TAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGAAAGGATACCATG
* *
78026604 TAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGG-TCCCATG
1 TAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGG-AAAGGATACCATG
* * * * *
78026659 TAAGACCATGCCAAGGCATGGCATTGGTGAGCTC-ATAAGGCAAGGATACCACG
1 TAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGAAAGGATACCATG
* *
78026712 TAAGATCATGTCAAGACATGGCA
1 TAAGACCATGCCAAGACATGGCA
78026735 ATGGTAAGTT
Statistics
Matches: 111, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
52 4 0.04
53 31 0.28
54 31 0.28
55 41 0.37
56 4 0.04
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
TAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGAAAGGATACCATG
Found at i:78037079 original size:77 final size:77
Alignment explanation
Indices: 78036984--78037143 Score: 243
Period size: 77 Copynumber: 2.1 Consensus size: 77
78036974 TATTATCTAA
* *
78036984 CCCGGAGCCAAACCATCCGATATGCATGGCCCGAAG-ACAAATCAGTATAATACGCACCTGAAT-
1 CCCGAAGCCAAACCATCCGATATGCATGGCCAGAAGCA-AAATCAGTATAATACGCACCTG-ATG
78037047 TGATAATATCATGG
64 TGATAATATCATGG
* *
78037061 CCCGAAGCCAAACCATCCGATATGCATGGCCAGAAGCAAAATCGGTATAATACGTACCTGATGTG
1 CCCGAAGCCAAACCATCCGATATGCATGGCCAGAAGCAAAATCAGTATAATACGCACCTGATGTG
*
78037126 CTAATATCATGG
66 ATAATATCATGG
78037138 CCCGAA
1 CCCGAA
78037144 TCCCAATCAA
Statistics
Matches: 76, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
76 2 0.03
77 73 0.96
78 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.19
Consensus pattern (77 bp):
CCCGAAGCCAAACCATCCGATATGCATGGCCAGAAGCAAAATCAGTATAATACGCACCTGATGTG
ATAATATCATGG
Found at i:78043379 original size:76 final size:77
Alignment explanation
Indices: 78043269--78043453 Score: 291
Period size: 76 Copynumber: 2.4 Consensus size: 77
78043259 GGTAACTTAT
* *
78043269 CCGAAGTACTATTATCATGGCCCGAAGCCAAACCACCCGATATGCATGGCCCGAAGCCAAATCGG
1 CCGAAGTGCTAATATCATGGCCCGAAGCCAAACCACCCGATATGCATGGCCCGAAGCCAAATCGG
*
78043334 TATAATATGCAC
66 TATAATACGCAC
* * * * *
78043346 CTGAAGTGCTAATATCAT-GCCTGAAGCCAAACCATCCGATATGCATGGCCTGAAGCCAAATTGG
1 CCGAAGTGCTAATATCATGGCCCGAAGCCAAACCACCCGATATGCATGGCCCGAAGCCAAATCGG
78043410 TATAATACGCAC
66 TATAATACGCAC
78043422 CCGAAGTGCTAATATCATGGCCCGAAGCCAAA
1 CCGAAGTGCTAATATCATGGCCCGAAGCCAAA
78043454 TCAACGTATC
Statistics
Matches: 97, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
76 70 0.72
77 27 0.28
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.19
Consensus pattern (77 bp):
CCGAAGTGCTAATATCATGGCCCGAAGCCAAACCACCCGATATGCATGGCCCGAAGCCAAATCGG
TATAATACGCAC
Found at i:78043708 original size:22 final size:22
Alignment explanation
Indices: 78043682--78043725 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
78043672 AAACGATGGA
78043682 ACGGATCGACTAGTCCGAAACT
1 ACGGATCGACTAGTCCGAAACT
78043704 ACGGATCGACTAGTCCGAAACT
1 ACGGATCGACTAGTCCGAAACT
78043726 TTGTTTTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.27, G:0.23, T:0.18
Consensus pattern (22 bp):
ACGGATCGACTAGTCCGAAACT
Found at i:78054400 original size:28 final size:30
Alignment explanation
Indices: 78054361--78054418 Score: 84
Period size: 28 Copynumber: 2.0 Consensus size: 30
78054351 GTCCATATAT
*
78054361 TTTATTTATTTTACATTTTAGTCCT-TTAA
1 TTTATTTATTTTACAATTTAGTCCTATTAA
*
78054390 TTTA-TTATTTTGCAATTTAGTCCTATTAA
1 TTTATTTATTTTACAATTTAGTCCTATTAA
78054419 CTTAAAATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 18 0.69
29 8 0.31
ACGTcount: A:0.26, C:0.10, G:0.05, T:0.59
Consensus pattern (30 bp):
TTTATTTATTTTACAATTTAGTCCTATTAA
Found at i:78059431 original size:28 final size:28
Alignment explanation
Indices: 78059394--78059526 Score: 176
Period size: 29 Copynumber: 4.6 Consensus size: 28
78059384 AACATATAGT
*
78059394 AACTCCGCACACTTAGTGTTATATAATCA
1 AACT-CGCACACTTAGTGCTATATAATCA
*
78059423 AACTCGCACACTTAGTGCTTACATAATCA
1 AACTCGCACACTTAGTGC-TATATAATCA
78059452 AACTCGCACACTTAGTGCTATATAATCA
1 AACTCGCACACTTAGTGCTATATAATCA
* ** *
78059480 AACTTGCACACTTAGTGCTATGCAATTTA
1 AACTCGCACACTTAGTGCTATATAA-TCA
*
78059509 AACCCGCACACTTAGTGC
1 AACTCGCACACTTAGTGC
78059527 CAATCTCATG
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
28 44 0.47
29 49 0.53
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
AACTCGCACACTTAGTGCTATATAATCA
Found at i:78059474 original size:57 final size:57
Alignment explanation
Indices: 78059394--78059526 Score: 187
Period size: 57 Copynumber: 2.3 Consensus size: 57
78059384 AACATATAGT
*
78059394 AACTCCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCA
1 AACT-CGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCA
* * * *
78059452 AACTCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTA
1 AACTCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCA
*
78059509 AACCCGCACACTTAGTGC
1 AACTCGCACACTTAGTGC
78059527 CAATCTCATG
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
57 61 0.90
58 7 0.10
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
AACTCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCA
Found at i:78062123 original size:40 final size:41
Alignment explanation
Indices: 78062070--78062147 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
78062060 ATTTTTATCA
* * *
78062070 TTTTAATTATTTTTTGATATTTAAAATATTTT-AATTTTATT
1 TTTTAAATATTTTTTAAAATTT-AAATATTTTAAATTTTATT
*
78062111 TTTTAAAT-TTTTTTAAAATTTAATTATTTTAAATTTT
1 TTTTAAATATTTTTTAAAATTTAAATATTTTAAATTTT
78062148 TTACATAGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
39 8 0.25
40 17 0.53
41 7 0.22
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.65
Consensus pattern (41 bp):
TTTTAAATATTTTTTAAAATTTAAATATTTTAAATTTTATT
Found at i:78064664 original size:15 final size:15
Alignment explanation
Indices: 78064628--78064660 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
78064618 TAAAAGCCAG
78064628 TAAT-TTTATTATTT
1 TAATATTTATTATTT
78064642 TAATATTTA-TATTT
1 TAATATTTATTATTT
78064656 TAATA
1 TAATA
78064661 ATTTTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TAATATTTATTATTT
Found at i:78069758 original size:30 final size:30
Alignment explanation
Indices: 78069713--78069801 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
78069703 TAAAGATAAC
*
78069713 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
* *
78069742 GAGAAACCCATAATAAAGAAATCC-AGAATA
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATA
* * * *
78069772 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
78069802 TGATACTATG
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
29 9 0.19
30 37 0.77
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.16, T:0.11
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATA
Found at i:78069761 original size:15 final size:15
Alignment explanation
Indices: 78069713--78069792 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
78069703 TAAAGATAAC
*
78069713 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
78069727 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* * *
78069742 GAGAAACCCATAATA
1 AAGAAATCCAGAATA
78069757 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
78069772 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
78069787 AAGAAA
1 AAGAAA
78069793 CCCAAGATAT
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
14 9 0.17
15 44 0.81
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.16, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:78069801 original size:15 final size:15
Alignment explanation
Indices: 78069724--78069801 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
78069714 AGAAAACCGA
78069724 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
78069739 ATAGAGAAACCCATA-
1 ATAAAGAAATCCA-AG
78069754 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
78069768 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
78069784 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
78069799 ATA
1 ATA
78069802 TGATACTATG
Statistics
Matches: 50, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
13 1 0.02
15 47 0.94
16 2 0.04
ACGTcount: A:0.56, C:0.15, G:0.15, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:78073725 original size:43 final size:43
Alignment explanation
Indices: 78073602--78073812 Score: 225
Period size: 43 Copynumber: 5.0 Consensus size: 43
78073592 ATTATCGAGA
* *
78073602 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCACTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGATATTGGCATTGTAT
*
78073645 TGTGATTACATGTAAGACCATGTCTAGGATATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGATATTGGCATTGTAT
* *
78073688 TGTGATTACGTGTAAGACCATGTCTGGGATATTGGCATCGT-T
1 TGTGATTACATGTAAGACCATGTCTGGGATATTGGCATTGTAT
*** * * * * *
78073730 ATACAATTACATGTAA-ACCCTGTTTGGGACAGTGGCATCG-AT
1 -TGTGATTACATGTAAGACCATGTCTGGGATATTGGCATTGTAT
* * *
78073772 ATGTGATAACATGTAAGA-CATATTTGGGATA-TGGCATTGTA
1 -TGTGATTACATGTAAGACCATGTCTGGGATATTGGCATTGTA
78073813 CGAGGTTTAT
Statistics
Matches: 142, Mismatches: 22, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
41 7 0.05
42 45 0.32
43 90 0.63
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.34
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGATATTGGCATTGTAT
Found at i:78077440 original size:119 final size:120
Alignment explanation
Indices: 78077258--78077480 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
78077248 TACTCGTTCA
* *
78077258 AATGCCTTTGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
78077323 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
78077378 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
78077440 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
78077481 CATCATTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.74
120 19 0.21
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Done.