Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 237 of 333
Found at i:78077480 original size:40 final size:40
Alignment explanation
Indices: 78077237--78077480 Score: 282
Period size: 40 Copynumber: 6.1 Consensus size: 40
78077227 CGGAATTTAA
** * *
78077237 CCGGATATAGCT-ACTCGTTCAAATGCCTTTGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
78077277 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
78077317 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
78077357 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
78077396 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
78077436 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
78077476 CCGGA
1 CCGGA
78077481 CATCATTCGA
Statistics
Matches: 178, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 32 0.18
40 132 0.74
41 12 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:78085276 original size:51 final size:51
Alignment explanation
Indices: 78085197--78085296 Score: 155
Period size: 51 Copynumber: 2.0 Consensus size: 51
78085187 GGACACACGG
* *
78085197 CCAGATCACACGCCCATGGGGCAGACTGTGTGTCACACACGGCCAAGACGA
1 CCAGATCACACGCCCATGGGGCAAACTGTATGTCACACACGGCCAAGACGA
** *
78085248 CCAGATCACACGCTTATGGGGCAAACTGTATGTCTCACACGGCCAAGAC
1 CCAGATCACACGCCCATGGGGCAAACTGTATGTCACACACGGCCAAGAC
78085297 ACATTCCCGT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.28, C:0.32, G:0.25, T:0.15
Consensus pattern (51 bp):
CCAGATCACACGCCCATGGGGCAAACTGTATGTCACACACGGCCAAGACGA
Found at i:78086452 original size:21 final size:21
Alignment explanation
Indices: 78086428--78086503 Score: 55
Period size: 21 Copynumber: 3.5 Consensus size: 21
78086418 CATCATGAAC
78086428 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
* * **
78086449 TCAGATGTCACATATATC-ATGAAC
1 TCAGA--CCACA-A-CTCAATGAGT
78086473 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
* *
78086494 TTAGATCACA
1 TCAGACCACA
78086504 TAGTTCCTAG
Statistics
Matches: 40, Mismatches: 10, Indels: 10
0.67 0.17 0.17
Matches are distributed among these distances:
20 2 0.05
21 18 0.45
22 4 0.10
23 4 0.10
24 10 0.25
25 2 0.05
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.24
Consensus pattern (21 bp):
TCAGACCACAACTCAATGAGT
Found at i:78086468 original size:45 final size:45
Alignment explanation
Indices: 78086413--78086499 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
78086403 AAACATGTGT
78086413 ACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGATGTC
1 ACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGATGTC
* *
78086458 ACATATATCATGAACTCAGACCACAACTCAATGAGTTTAGAT
1 ACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
78086500 CACATAGTTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.39, C:0.24, G:0.13, T:0.24
Consensus pattern (45 bp):
ACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGATGTC
Found at i:78092829 original size:43 final size:44
Alignment explanation
Indices: 78092781--78092994 Score: 249
Period size: 43 Copynumber: 5.0 Consensus size: 44
78092771 GATTATCGAG
78092781 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* * *
78092825 -TGTGATTACATGTAAGATCATGTCTAGGACATTGGAATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* * *
78092868 -TGTGATTACGTGTAAGACCATATCTGGGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
** * * * * * *
78092910 ATACGATTACGTGTAAAACCCTGACTGGGACAGTGGCATCG-AT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* *
78092953 ATGTGATAACATGTAAGACCATATCTGGGACA-TGGCATTGTA
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTA
78092995 CGAGATTTAT
Statistics
Matches: 142, Mismatches: 25, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
42 8 0.06
43 134 0.94
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
Found at i:78094267 original size:14 final size:15
Alignment explanation
Indices: 78094248--78094277 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
78094238 ATATTTGACT
78094248 TGTTCTTAATT-TTG
1 TGTTCTTAATTCTTG
78094262 TGTTCTTAATTCTTG
1 TGTTCTTAATTCTTG
78094277 T
1 T
78094278 TTTAATATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTCTTAATTCTTG
Found at i:78096295 original size:93 final size:93
Alignment explanation
Indices: 78096187--78096357 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
78096177 GCCCATAAGT
* *
78096187 GAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
78096252 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
78096280 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
78096345 CGAGTTCGGATGC
66 CGAGCTCGGATGC
78096358 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:78096354 original size:46 final size:46
Alignment explanation
Indices: 78096179--78096354 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
78096169 TGTAACCCGC
* * *
78096179 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
78096225 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
78096271 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
78096318 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
78096355 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 69 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:78106893 original size:27 final size:27
Alignment explanation
Indices: 78106863--78106945 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 27
78106853 CGAATGGCCA
78106863 ATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
* * ***
78106890 ATGTGAT-AAGGCCG-AA-TG--GCCA-
1 ATGTGATGAATG-TGAAAGTGTATATAT
78106912 ATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
78106939 ATGTGAT
1 ATGTGAT
78106946 AAGGCCGAAT
Statistics
Matches: 39, Mismatches: 10, Indels: 14
0.62 0.16 0.22
Matches are distributed among these distances:
22 8 0.21
23 6 0.15
24 2 0.05
25 2 0.05
26 6 0.15
27 15 0.38
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.33
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTATATAT
Found at i:78107009 original size:47 final size:47
Alignment explanation
Indices: 78106824--78107136 Score: 461
Period size: 47 Copynumber: 6.6 Consensus size: 47
78106814 NNNNNNNNNN
* *
78106824 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
78106871 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
78106920 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
78106969 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
78107016 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
78107063 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
78107110 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
78107137 TCCCGAAGGG
Statistics
Matches: 248, Mismatches: 13, Indels: 10
0.92 0.05 0.04
Matches are distributed among these distances:
46 2 0.01
47 153 0.62
49 92 0.37
50 1 0.00
ACGTcount: A:0.35, C:0.09, G:0.29, T:0.27
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:78115070 original size:21 final size:21
Alignment explanation
Indices: 78115044--78115085 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
78115034 ATTCTACTTT
78115044 GATTTTTCTAACATACCAATA
1 GATTTTTCTAACATACCAATA
78115065 GATTTTTCTAACATACCAATA
1 GATTTTTCTAACATACCAATA
78115086 AGCCATACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (21 bp):
GATTTTTCTAACATACCAATA
Found at i:78118946 original size:39 final size:39
Alignment explanation
Indices: 78118890--78118981 Score: 130
Period size: 39 Copynumber: 2.4 Consensus size: 39
78118880 ATGTATGAGA
* *
78118890 CTAGAAATATATCCGGACATGAGGTCTGCAGGCTATATG
1 CTAGAAATATATCCGGACATGAGGTCCGCAGGCTACATG
* * *
78118929 CTAGAAATATATTCGGACTTGAGGTCCGCAGGCTACGTG
1 CTAGAAATATATCCGGACATGAGGTCCGCAGGCTACATG
*
78118968 CTAGAAAAATATCC
1 CTAGAAATATATCC
78118982 AGGTTAAAGA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.25
Consensus pattern (39 bp):
CTAGAAATATATCCGGACATGAGGTCCGCAGGCTACATG
Found at i:78134913 original size:79 final size:81
Alignment explanation
Indices: 78134777--78134961 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
78134767 TTGAATGATG
* * *
78134777 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
*
78134841 TGTGCGAGATGCTA-A
66 TGTGCGAGATACTATA
* * * **
78134856 TTCCGGGCTAAG-CCCGAAGGCATTTGCGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
78134918 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
78134936 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
78134962 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.63
80 32 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:78134968 original size:40 final size:40
Alignment explanation
Indices: 78134777--78134968 Score: 185
Period size: 40 Copynumber: 4.8 Consensus size: 40
78134767 TTGAATGATG
* * * * *
78134777 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGC-GAGTTACTAAA
* * * * *
78134817 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATGCTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGAGCGAGTTACTAAA
*
78134857 TCCGGGCTAAG-CCCGAAGGCATTTGCGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTAAA
* * *
78134896 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTA-AA
* *
78134937 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
78134969 AGCTATATCC
Statistics
Matches: 126, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
39 33 0.26
40 83 0.66
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTAAA
Found at i:78134983 original size:79 final size:79
Alignment explanation
Indices: 78134830--78134994 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
78134820 GGACTAAGAT
* * * **
78134830 CCGAAGGCATTTGTGCGAGATGCTAATTCCGGGCTAAGCCCGAAGGCATTTGCGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
78134895 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
78134909 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
78134972 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
78134988 CCGAAGG
1 CCGAAGG
78134995 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:78142852 original size:79 final size:81
Alignment explanation
Indices: 78142716--78142900 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
78142706 TTGAATGATG
* * *
78142716 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
78142780 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
78142795 TTCCGGGCTAAG-CCCGAAGGCATTTGCGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
78142857 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
78142875 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
78142901 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 32 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:78142907 original size:40 final size:39
Alignment explanation
Indices: 78142717--78142900 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
78142707 TGAATGATGT
* * * *
78142717 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
78142757 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
78142797 CCGGGCTAAG-CCCGAAGGCATTTGCGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
78142835 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
78142876 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
78142901 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:78142922 original size:79 final size:79
Alignment explanation
Indices: 78142769--78142933 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
78142759 GGACTAAGAT
* * **
78142769 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGCGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
78142834 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
78142848 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
78142911 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
78142927 CCGAAGG
1 CCGAAGG
78142934 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:78150195 original size:48 final size:47
Alignment explanation
Indices: 78150140--78150412 Score: 244
Period size: 48 Copynumber: 5.7 Consensus size: 47
78150130 ATGGTAAATT
* * *
78150140 GCCGATGCTATGTCCCAGACATGGTCTTACATTGGCTTACATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTT-CATATCGAG
* * * *
78150188 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTGCATTTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTT-CATATCGAG
* *
78150236 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCATATCGAG
* * * * *
78150284 GCCAATGCCATGGCCCAGACATGGTCTTACACTAGTGC-ACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-GCTTCATATCGAG
* * * * * * *
78150332 GTCAAAGCCATGTCCCAGGCATGGTCTTACACTGGATCTCATA-CCATT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCATATCGA-G
* * * *
78150380 GTCGACGCCATGTTCCAGGCATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
78150413 AGCACACATA
Statistics
Matches: 188, Mismatches: 31, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
46 1 0.01
47 3 0.02
48 180 0.96
49 2 0.01
50 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCATATCGAG
Found at i:78150307 original size:96 final size:96
Alignment explanation
Indices: 78150142--78150425 Score: 315
Period size: 96 Copynumber: 3.0 Consensus size: 96
78150132 GGTAAATTGC
* * * *
78150142 CGATGCTATGTCCCAGACATGGTCTTACATTGGCT-TACATGTCGAGGCCGATGCCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATATCGTGGCCGATGCCATGTCCCAG
* *
78150206 ACATGGTCTTACACTAGCTTG-CATTTCAATG-
65 ACATGGTCTTACACTAGC-TGACATATCAACGT
* *
78150237 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGCCAATGCCATGGCCCAG
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGCCGATGCCATGTCCCAG
78150302 ACATGGTCTTACACTAG-TGCACATATCAACGT
65 ACATGGTCTTACACTAGCTG-ACATATCAACGT
* * * * * * * * * * *
78150334 CAAAGCCATGTCCCAGGCATGGTCTTACACTGGATCTCATACCATTGTCGACGCCATGTTCCAGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGCCGATGCCATGTCCCAGA
**
78150399 CATGGTCTTACACTAGCACACATATCA
66 CATGGTCTTACACTAGCTGACATATCA
78150426 CTCAAATGTC
Statistics
Matches: 160, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
94 2 0.01
95 1 0.01
96 155 0.97
97 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (96 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGCCGATGCCATGTCCCAGA
CATGGTCTTACACTAGCTGACATATCAACGT
Found at i:78151412 original size:40 final size:39
Alignment explanation
Indices: 78151341--78151422 Score: 101
Period size: 40 Copynumber: 2.1 Consensus size: 39
78151331 TAACGACTTA
**
78151341 TCGGCTAAAATGACACTTAGTGTGCGGTTTGAAATAGCT
1 TCGGCTAAAATGACACTTAGTGTGCAATTTGAAATAGCT
* * * *
78151380 TCGGCTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGTT
1 TCGGCTAAAA-TGACACTTAGTGTGCAATTTGAAATAGCT
78151420 TCG
1 TCG
78151423 TCTATATTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
39 10 0.28
40 26 0.72
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.32
Consensus pattern (39 bp):
TCGGCTAAAATGACACTTAGTGTGCAATTTGAAATAGCT
Found at i:78154330 original size:43 final size:43
Alignment explanation
Indices: 78154203--78154346 Score: 130
Period size: 43 Copynumber: 3.3 Consensus size: 43
78154193 GGAGAGCCAG
* *
78154203 TGTAAGACCATGTCTGGGACATGGCATCGACTCGATATGTGATTACA
1 TGTAAGACCATGTGTGGGACAT-G-AGC-A-TCGATATGTGATTACA
* * * * *
78154250 TGTAAGACCATGTTTGGGACATTAGCATTG-TATTGTGATTTCG
1 TGTAAGACCATGTGTGGGACATGAGCATCGATA-TGTGATTACA
* * *
78154293 TGTAAGACCCTGTGTGGGATAGTGA-CATCGATATGTGATAACA
1 TGTAAGACCATGTGTGGGACA-TGAGCATCGATATGTGATTACA
78154336 TGTAAGACCAT
1 TGTAAGACCAT
78154347 ATCTAGGATA
Statistics
Matches: 79, Mismatches: 15, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
42 2 0.03
43 49 0.62
44 5 0.06
45 2 0.03
47 21 0.27
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTGTGGGACATGAGCATCGATATGTGATTACA
Found at i:78162577 original size:25 final size:25
Alignment explanation
Indices: 78162542--78162712 Score: 225
Period size: 25 Copynumber: 6.8 Consensus size: 25
78162532 TAAGCTTGTT
*
78162542 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
*
78162567 AATTTGCTCTTAAAAATTCCGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
* *
78162592 AAATTGCTCTTAATAATTCCGATTA
1 AATTTGCTCTTAATAATTCCGGTTA
*
78162617 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
**
78162642 AATTTTTTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
* * *
78162667 AATTTGCTCTTAACATTTCTGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
* * *
78162692 AATTTGCCCTTATTATTTCCG
1 AATTTGCTCTTAATAATTCCG
78162713 AATAAGTTAC
Statistics
Matches: 128, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 128 1.00
ACGTcount: A:0.28, C:0.15, G:0.11, T:0.46
Consensus pattern (25 bp):
AATTTGCTCTTAATAATTCCGGTTA
Found at i:78163599 original size:45 final size:45
Alignment explanation
Indices: 78163532--78163751 Score: 304
Period size: 45 Copynumber: 5.0 Consensus size: 45
78163522 TATCGTACAG
*
78163532 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
78163577 TACTATTCGGGCCTTTGTGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
78163622 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGTCAGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
78163667 TACAATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
78163712 TGA-TATT-GGG-CTTCGAGCCTAGCAGGCGA-AATGTCGGTGA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
78163752 ATGAATTCGG
Statistics
Matches: 159, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
42 9 0.06
43 18 0.11
44 3 0.02
45 128 0.81
46 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:78170334 original size:25 final size:25
Alignment explanation
Indices: 78170141--78170321 Score: 299
Period size: 25 Copynumber: 7.2 Consensus size: 25
78170131 TAAGCTTATT
78170141 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
78170166 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
*
78170191 AATTTGTTCTTAATAATCCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
* *
78170216 AATTTGCTCTTAATAATTCTGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
* *
78170241 AATTTGTTCTTAATAATTTCGATTA
1 AATTTGTTCTTAATAATTCCGGTTA
78170266 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
* *
78170291 AATTTGCTCTTAATATTTCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
78170316 AATTTG
1 AATTTG
78170322 CCCTTATTAT
Statistics
Matches: 144, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 144 1.00
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.48
Consensus pattern (25 bp):
AATTTGTTCTTAATAATTCCGGTTA
Found at i:78171220 original size:45 final size:45
Alignment explanation
Indices: 78171156--78171510 Score: 556
Period size: 45 Copynumber: 8.0 Consensus size: 45
78171146 TATCGTACAG
*
78171156 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
78171201 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
78171246 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCAGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
78171291 TACTATTCGGGCCTTTGAACCTAGCAGGTTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
78171336 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTAAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
78171381 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATTCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
78171426 TACTATTCGGGCCTTCGAGCCTAGTAGGCTATAATGCCGATGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
78171471 TGA-TA-TCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCAGTGA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
78171511 ATGAATTAGG
Statistics
Matches: 290, Mismatches: 19, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
42 9 0.03
43 17 0.06
44 5 0.02
45 258 0.89
46 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:78173959 original size:47 final size:47
Alignment explanation
Indices: 78173804--78173961 Score: 137
Period size: 50 Copynumber: 3.4 Consensus size: 47
78173794 GATGTAAGCT
* * *
78173804 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCTATAA--GATGTGTC
1 AGTGTAAGACCATGTCTAGGAAATGGCATCGACT-TAATGGATGAGTC
* * * * ** *
78173848 AGTGTAAGACCACGTTTGGGATATGGCATCAGCACGGATATGTGA-GAGTT
1 AGTGTAAGACCATGTCTAGGAAATGGCATC-G-ACTTA-ATG-GATGAGTC
*
78173898 AGTGTAAGACCATGTCTAGGAAATGGCATCGACTTAATGGATGAGCC
1 AGTGTAAGACCATGTCTAGGAAATGGCATCGACTTAATGGATGAGTC
78173945 AGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCT
78173962 GGCACACGAC
Statistics
Matches: 88, Mismatches: 17, Indels: 15
0.73 0.14 0.12
Matches are distributed among these distances:
44 9 0.10
45 10 0.11
46 7 0.08
47 25 0.28
48 5 0.06
49 1 0.01
50 29 0.33
51 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTAGGAAATGGCATCGACTTAATGGATGAGTC
Found at i:78175718 original size:56 final size:56
Alignment explanation
Indices: 78175632--78175751 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
78175622 ACAAGGGATG
*
78175632 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGAAAGAATAAAATAAGAAGC
78175688 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGAAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGAAAGAATAAAATAAGAAGC
78175744 ATGGGCAA
1 ATGGGCAA
78175752 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGAAAGAATAAAATAAGAAGC
Found at i:78176970 original size:40 final size:40
Alignment explanation
Indices: 78176880--78177104 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
78176870 TCGAATGATG
* * * * *
78176880 TCCGCGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
78176920 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** * *
78176960 TCTAGGCTAAG-CCCGAAGGCATTGGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
78176999 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
78177039 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
78177080 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
78177105 AACGAGTAGC
Statistics
Matches: 158, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
39 31 0.20
40 117 0.74
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:78177111 original size:80 final size:78
Alignment explanation
Indices: 78176887--78177137 Score: 249
Period size: 79 Copynumber: 3.2 Consensus size: 78
78176877 ATGTCCGCGC
* * * * *
78176887 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATTTGTGCG
* * *
78176950 AGATACTAATTCTAGGC
64 AG-TACTAAATC-CGGT
* * *
78176967 TAAG-CCCGAAGGCATTGGTGTGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGA
78177030 GTTACTAAATCCGGGT
65 G-TACTAAATCC-GGT
* **
78177046 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
78177111 TAGCTATATCCGGT
66 TA-CTAAATCCGGT
* *
78177125 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
78177138 TACGTGATTT
Statistics
Matches: 143, Mismatches: 21, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
78 2 0.01
79 72 0.50
80 67 0.47
81 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TACTAAATCCGGT
Found at i:78177126 original size:119 final size:119
Alignment explanation
Indices: 78176887--78177137 Score: 260
Period size: 119 Copynumber: 2.1 Consensus size: 119
78176877 ATGTCCGCGC
*
78176887 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
* * ***
78176952 ATACTAATTCTAGGCTAAGCCCGAAGGCATTGGTGTGAGTTACTAAATCCGGGT
66 ATACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATCCGGGT
* * * **
78177006 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
* * * * *
78177069 AGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGT
64 AGATACTAAT-ACCAGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAATCCGGGT
* *
78177125 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
78177138 TACGTGATTT
Statistics
Matches: 109, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
118 3 0.03
119 76 0.70
120 30 0.28
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (119 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
ATACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATCCGGGT
Found at i:78184846 original size:40 final size:40
Alignment explanation
Indices: 78184762--78184953 Score: 230
Period size: 40 Copynumber: 4.8 Consensus size: 40
78184752 TCGAATGATG
* * *
78184762 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
* *
78184802 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
78184842 TCCGGGCTAAG-CCCAAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
78184881 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
*
78184921 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA
78184954 GTTACTATAA
Statistics
Matches: 133, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
39 33 0.25
40 89 0.67
41 10 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:78185961 original size:47 final size:47
Alignment explanation
Indices: 78185883--78186577 Score: 1127
Period size: 47 Copynumber: 14.7 Consensus size: 47
78185873 CCCTTCGGGA
* * * * * * *
78185883 CTTATCACATTTATATACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
78185930 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78185977 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78186024 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78186073 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78186122 CTTATCAGATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78186169 ATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78186216 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78186263 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78186312 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATCAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78186361 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78186408 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78186455 CTTATCACATTTATATACACTTTCACATTCATCACAT----C----GGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78186496 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78186543 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
78186578 ATATACACTT
Statistics
Matches: 616, Mismatches: 18, Indels: 28
0.93 0.03 0.04
Matches are distributed among these distances:
39 26 0.04
41 12 0.02
45 1 0.00
47 361 0.59
49 216 0.35
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:78186201 original size:25 final size:25
Alignment explanation
Indices: 78186125--78186203 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
78186115 ATTAGGCCTT
*
78186125 ATCAGATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
**** ***
78186150 ATCACAT-CGGCCA-TTAGGCATT-
1 ATCACATATATACACTTTCACATTC
78186172 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
78186197 ATCACAT
1 ATCACAT
78186204 CGGCCATTAG
Statistics
Matches: 36, Mismatches: 15, Indels: 6
0.63 0.26 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 13 0.36
ACGTcount: A:0.34, C:0.27, G:0.06, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:78186226 original size:192 final size:190
Alignment explanation
Indices: 78185883--78186577 Score: 1167
Period size: 192 Copynumber: 3.7 Consensus size: 190
78185873 CCCTTCGGGA
* * * * * * * *
78185883 CTTATCACAT-T-TATATACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
78185946 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
78186011 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78186073 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAGATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
78186138 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
78186203 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78186263 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
78186328 ACACTTTCACATTCATCACATCGGCCATCAGGCCTTATCACATATATACACTTTCACATTCATCA
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
78186393 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
129 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78186455 CTTATCACATTTATATACACTTTCACATTCATCACAT----C----GGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
78186512 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
78186577 T
131 T
78186578 ATATACACTT
Statistics
Matches: 485, Mismatches: 16, Indels: 16
0.94 0.03 0.03
Matches are distributed among these distances:
182 72 0.15
184 11 0.02
188 1 0.00
190 105 0.22
191 1 0.00
192 295 0.61
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:78186302 original size:239 final size:239
Alignment explanation
Indices: 78185883--78186711 Score: 1267
Period size: 239 Copynumber: 3.6 Consensus size: 239
78185873 CCCTTCGGGA
* * * * * * * * *
78185883 CTTATCACATTTATATACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
78185948 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
78186013 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
131 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
78186078 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
196 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
78186122 CTTATCAGATATATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
78186187 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
78186252 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
131 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
*
78186317 CACATATATATACACTTTCACATTCATCACATCGGCCATCAGGC
196 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78186361 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
78186426 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATTTATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACA--TATATACACTTTCACATTCATCACA
*
78186491 T----C----GGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
129 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
78186546 ATCAC--ATATAT--A----CAC-TT--T--CA-----CATT----
194 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78186570 C--ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
78186633 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
78186698 TCGGCCATTAGGCC
129 TCGGCCATTAGGCC
78186712 ATACTATCAT
Statistics
Matches: 562, Mismatches: 16, Indels: 48
0.90 0.03 0.08
Matches are distributed among these distances:
207 125 0.22
209 2 0.00
211 1 0.00
213 3 0.01
215 4 0.01
218 2 0.00
220 1 0.00
222 2 0.00
223 3 0.01
227 1 0.00
229 6 0.01
231 46 0.08
233 11 0.02
237 1 0.00
239 328 0.58
241 26 0.05
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (239 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:78186576 original size:72 final size:72
Alignment explanation
Indices: 78186499--78186649 Score: 293
Period size: 72 Copynumber: 2.1 Consensus size: 72
78186489 CATCGGCCTT
*
78186499 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
78186564 CACATTC
66 CACATTC
78186571 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
78186636 CACATTC
66 CACATTC
78186643 ATCACAT
1 ATCACAT
78186650 CGGCCATTAG
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 78 1.00
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.34
Consensus pattern (72 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
CACATTC
Found at i:78186580 original size:25 final size:25
Alignment explanation
Indices: 78186546--78186602 Score: 114
Period size: 25 Copynumber: 2.3 Consensus size: 25
78186536 ATTAGGCCTT
78186546 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
78186571 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
78186596 ATCACAT
1 ATCACAT
78186603 CGGCCATTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.37, C:0.28, G:0.00, T:0.35
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:78186622 original size:47 final size:47
Alignment explanation
Indices: 78186571--78186711 Score: 264
Period size: 47 Copynumber: 3.0 Consensus size: 47
78186561 TTTCACATTC
78186571 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
78186618 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
78186665 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 ATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
78186712 ATACTATCAT
Statistics
Matches: 92, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
47 52 0.57
49 40 0.43
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
Found at i:78192731 original size:28 final size:28
Alignment explanation
Indices: 78192693--78192846 Score: 247
Period size: 28 Copynumber: 5.5 Consensus size: 28
78192683 TAAATTGTGC
*
78192693 AGCACTAAGTGTGCGAATTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
78192721 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
78192749 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
78192777 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
78192805 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
78192832 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78192847 GACTTAATAA
Statistics
Matches: 120, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
27 22 0.18
28 98 0.82
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:78200680 original size:27 final size:27
Alignment explanation
Indices: 78200628--78200829 Score: 307
Period size: 27 Copynumber: 7.4 Consensus size: 27
78200618 GAGATTGGCG
*
78200628 CTAAGTGTGCGGGTTTGACTATGTAGCA
1 CTAAGTGTGCGAG-TTGACTATGTAGCA
* *
78200656 CTAAGTGTGCGAATTGAATATGTAGCA
1 CTAAGTGTGCGAGTTGACTATGTAGCA
78200683 CTAAGTGTGCGAGTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTGACTATGTAGCA
78200710 CTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGAG-TTGACTATGTAGCA
78200738 CTAAGTGTGCGAGTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTGACTATGTAGCA
*
78200765 CTAA-TGTGCGAGTATGATTATGTAGCA
1 CTAAGTGTGCGAGT-TGACTATGTAGCA
* *
78200792 CTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTGACTATGTAGCA
*
78200819 CTGAGTGTGCG
1 CTAAGTGTGCG
78200830 GACTTAATAA
Statistics
Matches: 163, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
26 9 0.06
27 107 0.66
28 47 0.29
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.31
Consensus pattern (27 bp):
CTAAGTGTGCGAGTTGACTATGTAGCA
Found at i:78200765 original size:82 final size:82
Alignment explanation
Indices: 78200628--78200829 Score: 318
Period size: 82 Copynumber: 2.5 Consensus size: 82
78200618 GAGATTGGCG
*
78200628 CTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGC
1 CTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGTAGCACTAA-TGTGC
78200693 GAGT-TGACTATGTAGCA
65 GAGTATGACTATGTAGCA
* *
78200710 CTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAATGTGCG
1 CTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGTAGCACTAATGTGCG
*
78200775 AGTATGATTATGTAGCA
66 AGTATGACTATGTAGCA
* * *
78200792 CTAAGTGTGCGAG-TTGATTATATAGCACTGAGTGTGCG
1 CTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG
78200830 GACTTAATAA
Statistics
Matches: 112, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
81 31 0.28
82 81 0.72
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.31
Consensus pattern (82 bp):
CTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGTAGCACTAATGTGCG
AGTATGACTATGTAGCA
Found at i:78218824 original size:43 final size:43
Alignment explanation
Indices: 78218712--78218862 Score: 119
Period size: 43 Copynumber: 3.5 Consensus size: 43
78218702 ACAATGCAAC
** * * * **
78218712 GTCCCAGATGTGGTCTTACATGT-AATCAAATATCGTTGTCTCT
1 GTCCCAGACATGGTCTTACACGTAAATCAAATAT-GATGCCAAT
* * * *
78218755 GTCCTAGATAGGGTCTTATACG-AAATCAAATATGATGCCAAT
1 GTCCCAGACATGGTCTTACACGTAAATCAAATATGATGCCAAT
* * *
78218797 GTCCCAGACATGGTCTTACACGTAAATCATAAGT-CGATGCTAAC
1 GTCCCAGACATGGTCTTACACGTAAATCA-AA-TATGATGCCAAT
*
78218841 GTCCCAGACGTGGTCTTACACG
1 GTCCCAGACATGGTCTTACACG
78218863 ATAACACATA
Statistics
Matches: 87, Mismatches: 17, Indels: 7
0.78 0.15 0.06
Matches are distributed among these distances:
42 23 0.26
43 33 0.38
44 30 0.34
45 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGTAAATCAAATATGATGCCAAT
Found at i:78226449 original size:25 final size:25
Alignment explanation
Indices: 78226421--78226468 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
78226411 TTATAATATG
* *
78226421 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACTATTATACCCCTAGGTA
78226446 AAAATGACTATTATACCCCTAGG
1 AAAATGACTATTATACCCCTAGG
78226469 GTTTACTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (25 bp):
AAAATGACTATTATACCCCTAGGTA
Found at i:78226528 original size:20 final size:19
Alignment explanation
Indices: 78226503--78226574 Score: 92
Period size: 20 Copynumber: 3.7 Consensus size: 19
78226493 GGATATGATA
78226503 CACATGATTGATATGATATG
1 CACATGATTG-TATGATATG
*
78226523 CACATGACATGTATGATATG
1 CACATGA-TTGTATGATATG
*
78226543 CACATGATATGTATGAAATG
1 CACATGAT-TGTATGATATG
78226563 CACATGA-TGTAT
1 CACATGATTGTAT
78226575 TCATAAATGC
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
18 5 0.11
20 40 0.85
21 2 0.04
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (19 bp):
CACATGATTGTATGATATG
Found at i:78226680 original size:25 final size:26
Alignment explanation
Indices: 78226619--78226689 Score: 110
Period size: 26 Copynumber: 2.8 Consensus size: 26
78226609 GAAGGAAGTG
78226619 CAAAAGGGCTTATGCCCCAGTTTATT
1 CAAAAGGGCTTATGCCCCAGTTTATT
* *
78226645 GAAAAGGGCTTATGCCCCATTTTA-T
1 CAAAAGGGCTTATGCCCCAGTTTATT
78226670 CAAAAGGGCTT-TGCCCCAGT
1 CAAAAGGGCTTATGCCCCAGT
78226690 AATTAAAAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 8 0.20
25 11 0.27
26 22 0.54
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (26 bp):
CAAAAGGGCTTATGCCCCAGTTTATT
Found at i:78232340 original size:43 final size:42
Alignment explanation
Indices: 78232276--78232398 Score: 131
Period size: 43 Copynumber: 2.9 Consensus size: 42
78232266 CAGAAAGCTC
* * *
78232276 ATACGATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAG
1 ATACGATGCCAATGTCCCAGACGTGGTCTTACAAGTAATCAA
** * **
78232318 ATATCGATGCCTCTTTCCCAGACAG-GGTCTTACAAAAAATCAA
1 ATA-CGATGCCAATGTCCCAGAC-GTGGTCTTACAAGTAATCAA
* *
78232361 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAA
1 ATACGATGCCAATGTCCCAGACGTGGTCTTACAAGTAA
78232399 ATTATAAGTC
Statistics
Matches: 63, Mismatches: 15, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
42 30 0.48
43 32 0.51
44 1 0.02
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACGTGGTCTTACAAGTAATCAA
Found at i:78243829 original size:11 final size:11
Alignment explanation
Indices: 78243813--78243837 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
78243803 AATCTTCATC
78243813 ATGTTAATTGT
1 ATGTTAATTGT
78243824 ATGTTAATTGT
1 ATGTTAATTGT
78243835 ATG
1 ATG
78243838 GTTATGATGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.20, T:0.52
Consensus pattern (11 bp):
ATGTTAATTGT
Found at i:78246729 original size:49 final size:48
Alignment explanation
Indices: 78246651--78246801 Score: 144
Period size: 49 Copynumber: 3.1 Consensus size: 48
78246641 AGATCACCTA
* * *
78246651 CTCCTAGATGTTTGGGGAGGCTTACGAAAGGTAATAAATTTGGCCTTG
1 CTCCTAGATGTATGGGGAAGCTTATGAAAGGTAATAAATTTGGCCTTG
* *
78246699 CTTCTAGATGTATGAGGGAAGCTTATGAAAGGTAA-AAATAGTT-ACCTTG
1 CTCCTAGATGTATG-GGGAAGCTTATGAAAGGTAATAAAT--TTGGCCTTG
* * * * **
78246748 CTCCCAAATGCATGGGGGACGACTTATGAATTGTAATAAATTTGGCCTTG
1 CTCCTAGATGTAT-GGGGAAG-CTTATGAAAGGTAATAAATTTGGCCTTG
78246798 CTCC
1 CTCC
78246802 CAACCGTATT
Statistics
Matches: 83, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
48 16 0.19
49 39 0.47
50 24 0.29
51 4 0.05
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (48 bp):
CTCCTAGATGTATGGGGAAGCTTATGAAAGGTAATAAATTTGGCCTTG
Found at i:78248960 original size:13 final size:13
Alignment explanation
Indices: 78248942--78248966 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78248932 GAATTAGTAT
78248942 GTATGAAAATTTC
1 GTATGAAAATTTC
78248955 GTATGAAAATTT
1 GTATGAAAATTT
78248967 GATCATTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.40
Consensus pattern (13 bp):
GTATGAAAATTTC
Found at i:78249539 original size:27 final size:28
Alignment explanation
Indices: 78249509--78249563 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 28
78249499 TTGATGAATT
* * *
78249509 TGAGTAATTTGGG-CTAAATTGTGAAAA
1 TGAGAAATTGGGGACTAAAATGTGAAAA
78249536 TGAGAAATTGGGGTACTAAAATGTGAAA
1 TGAGAAATTGGGG-ACTAAAATGTGAAA
78249564 TAAATGAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 11 0.48
29 12 0.52
ACGTcount: A:0.40, C:0.04, G:0.27, T:0.29
Consensus pattern (28 bp):
TGAGAAATTGGGGACTAAAATGTGAAAA
Found at i:78261387 original size:47 final size:47
Alignment explanation
Indices: 78261336--78261573 Score: 395
Period size: 47 Copynumber: 5.1 Consensus size: 47
78261326 GATTTTATGA
78261336 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* * *
78261383 GATGAATGTAAACATGCATATATGTGCTAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* *
78261430 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGACCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
78261477 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* ** *
78261524 GATGATTGTGAACATGCATATGTGTGATAAGGTAGAATGGCTAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
78261571 GAT
1 GAT
78261574 AAACGTGGAA
Statistics
Matches: 179, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 179 1.00
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
Found at i:78261606 original size:94 final size:94
Alignment explanation
Indices: 78261336--78261619 Score: 401
Period size: 94 Copynumber: 3.0 Consensus size: 94
78261326 GATTTTATGA
*
78261336 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAACATGCA
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
78261401 TATATGTGCTAAGGCCGAATGGCCAATGT
66 TATATGTGCTAAGGCCGAATGGCCAATGT
* *
78261430 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
* *
78261495 TATGTGTGATAAGGCCGAATGGCCAATGT
66 TATATGTGCTAAGGCCGAATGGCCAATGT
* ** * * * * *
78261524 GATGATTGTGAACATGCATATGTGTGATAAGGTAGAATGGCTAATGTGATAAACGTGGAA-GTGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATGC
* *
78261588 ATATATGTGGCGAA-GCCGAATGGCTAATGT
65 ATATATGT-GCTAAGGCCGAATGGCCAATGT
78261618 GA
1 GA
78261620 GATATGTATG
Statistics
Matches: 169, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
94 163 0.96
95 6 0.04
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (94 bp):
GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
TATATGTGCTAAGGCCGAATGGCCAATGT
Found at i:78261606 original size:141 final size:141
Alignment explanation
Indices: 78261336--78261619 Score: 401
Period size: 141 Copynumber: 2.0 Consensus size: 141
78261326 GATTTTATGA
78261336 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAACATGCA
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAACATGCA
* * * * *
78261401 TATATGTGCTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGA
66 TATATGTGATAAGGCAGAATGGCCAATGTGATAAACGTGAACATGCATATATGTGAGAAGGCCGA
78261466 ATGACCAATGT
131 ATGACCAATGT
* *
78261477 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGATTGTGAACATGCA
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAACATGCA
* * * * * *
78261542 TATGTGTGATAAGGTAGAATGGCTAATGTGATAAACGTGGAA-GTGTATATATGTGGCGAA-GCC
66 TATATGTGATAAGGCAGAATGGCCAATGTGATAAACGT-GAACATGCATATATGT-GAGAAGGCC
* *
78261605 GAATGGCTAATGT
129 GAATGACCAATGT
78261618 GA
1 GA
78261620 GATATGTATG
Statistics
Matches: 126, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
141 120 0.95
142 6 0.05
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (141 bp):
GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAACATGCA
TATATGTGATAAGGCAGAATGGCCAATGTGATAAACGTGAACATGCATATATGTGAGAAGGCCGA
ATGACCAATGT
Found at i:78269589 original size:44 final size:44
Alignment explanation
Indices: 78269521--78269612 Score: 166
Period size: 44 Copynumber: 2.1 Consensus size: 44
78269511 ACAACAATAA
* *
78269521 ATGACCTATCTATGAAGAACAAAGGTTACAAATCGAGGAGCTAG
1 ATGACCTATCTATGAAGAAAAAAGGTTACAAATCGAGCAGCTAG
78269565 ATGACCTATCTATGAAGAAAAAAGGTTACAAATCGAGCAGCTAG
1 ATGACCTATCTATGAAGAAAAAAGGTTACAAATCGAGCAGCTAG
78269609 ATGA
1 ATGA
78269613 ATGGCAGACA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.21
Consensus pattern (44 bp):
ATGACCTATCTATGAAGAAAAAAGGTTACAAATCGAGCAGCTAG
Found at i:78279603 original size:42 final size:42
Alignment explanation
Indices: 78279524--78279605 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
78279514 GGTGTAGGGG
* **
78279524 ACACACGGCCATATCACACGCCCATGTGGCGGTCCGTGTGTC
1 ACACACGGCCATAACACACGCCCATGTGGCGACCCGTGTGTC
* *
78279566 ACACACGGCC-TAGACACACGCCCGTGTGGCTACCCGTGTG
1 ACACACGGCCATA-ACACACGCCCATGTGGCGACCCGTGTG
78279606 AACCTTGTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
41 2 0.06
42 32 0.94
ACGTcount: A:0.20, C:0.37, G:0.27, T:0.17
Consensus pattern (42 bp):
ACACACGGCCATAACACACGCCCATGTGGCGACCCGTGTGTC
Found at i:78287072 original size:27 final size:27
Alignment explanation
Indices: 78287027--78287252 Score: 229
Period size: 27 Copynumber: 8.4 Consensus size: 27
78287017 AGACTAAAGC
* *
78287027 CCCTTATGTGATAAGATGACTATTTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
* *
78287054 CCTTTATATGGTAAAATGACTATTTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
* *
78287081 CCCTCATGTGGTAAAATGACTGTTTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
78287108 CCCTTATGTGGTAAAATGACTATTTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
* * * * * *
78287135 CCCTTACGTGGCAAAATAAGTGTTTTT
1 CCCTTATGTGGTAAAATGACTATTTTG
* * * * ** *
78287162 CTCTCATGTGGTAAGATGAATGCTTTA
1 CCCTTATGTGGTAAAATGACTATTTTG
* *
78287189 CCCTTATGTGATAAAATTACTATTTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
* *
78287216 CCCTTATGTGGTAAAATAACTGTTTTGG
1 CCCTTATGTGGTAAAATGACTATTTT-G
78287244 CCC-TATGTG
1 CCCTTATGTG
78287253 ATATATGTTT
Statistics
Matches: 161, Mismatches: 37, Indels: 2
0.81 0.19 0.01
Matches are distributed among these distances:
27 157 0.98
28 4 0.02
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.40
Consensus pattern (27 bp):
CCCTTATGTGGTAAAATGACTATTTTG
Found at i:78287127 original size:81 final size:81
Alignment explanation
Indices: 78287027--78287252 Score: 292
Period size: 81 Copynumber: 2.8 Consensus size: 81
78287017 AGACTAAAGC
* * * * *
78287027 CCCTTATGTGATAAGATGACTATTTTGCCTTTATATGGTAAAATGACTATTTTGCCCTCATGTGG
1 CCCTTATGTGATAAAATGACTATTTTGCCCTTATGTGGTAAAATAACTGTTTTGCCCTCATGTGG
* * *
78287092 TAAAATGACTGTTTTG
66 TAAAATGAATGCTTTA
* * * * * *
78287108 CCCTTATGTGGTAAAATGACTATTTTGCCCTTACGTGGCAAAATAAGTGTTTTTCTCTCATGTGG
1 CCCTTATGTGATAAAATGACTATTTTGCCCTTATGTGGTAAAATAACTGTTTTGCCCTCATGTGG
*
78287173 TAAGATGAATGCTTTA
66 TAAAATGAATGCTTTA
*
78287189 CCCTTATGTGATAAAATTACTATTTTGCCCTTATGTGGTAAAATAACTGTTTTGGCCCT-ATGTG
1 CCCTTATGTGATAAAATGACTATTTTGCCCTTATGTGGTAAAATAACTGTTTT-GCCCTCATGTG
78287253 ATATATGTTT
Statistics
Matches: 122, Mismatches: 22, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
81 119 0.98
82 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.40
Consensus pattern (81 bp):
CCCTTATGTGATAAAATGACTATTTTGCCCTTATGTGGTAAAATAACTGTTTTGCCCTCATGTGG
TAAAATGAATGCTTTA
Found at i:78289979 original size:42 final size:42
Alignment explanation
Indices: 78289881--78289993 Score: 104
Period size: 42 Copynumber: 2.7 Consensus size: 42
78289871 AAAGCCTGAA
* * * * *
78289881 GGTTGAACAGAAGCTC-ATGAGAACTAAACAGAAACCCATAAG
1 GGTTAAACAAAAGCTCAAT-AGAGCTGAACAAAAACCCATAAG
* *** *
78289923 GGTTGAATGGAAGCTC-TTAAGAGCTGAACAAAAACCCATAAG
1 GGTTAAACAAAAGCTCAAT-AGAGCTGAACAAAAACCCATAAG
78289965 GGTTAAACAAAAGCTCAATAGAGCTGAAC
1 GGTTAAACAAAAGCTCAATAGAGCTGAAC
78289994 GTGTAACATC
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
42 57 0.98
43 1 0.02
ACGTcount: A:0.43, C:0.18, G:0.22, T:0.17
Consensus pattern (42 bp):
GGTTAAACAAAAGCTCAATAGAGCTGAACAAAAACCCATAAG
Found at i:78328898 original size:79 final size:79
Alignment explanation
Indices: 78328815--78328979 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
78328805 GGACTAAGAT
** *
78328815 CCGAAGGCATTTGTGCGAGATACTA-ATTTCGGGCTAAG-CCCGAAGGCATTGGTACGAGTTA-C
1 CCGAAGGCATTTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCATTGGAACGAG-TAGC
*
78328877 TAAATCCGGGTTAAGTC
64 TAAATCC-GGTTAAATC
* * *
78328894 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTA
1 CCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTGGAACGAGTAGCTA
* *
78328959 TATCCGGTTAAATT
66 AATCCGGTTAAATC
78328973 CCGAAGG
1 CCGAAGG
78328980 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
79 48 0.65
80 26 0.35
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTGGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:78328953 original size:40 final size:40
Alignment explanation
Indices: 78328762--78328953 Score: 194
Period size: 40 Copynumber: 4.8 Consensus size: 40
78328752 TCGAATGATG
* * * * *
78328762 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAA
* * * *
78328802 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAA
* *
78328842 TTCGGGCTAAG-CCCGAAGGCATTGGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
* *
78328881 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTA-AA
* *
78328922 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGT
78328954 AGCTATATCC
Statistics
Matches: 126, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
39 32 0.25
40 84 0.67
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
Found at i:78333973 original size:28 final size:27
Alignment explanation
Indices: 78333910--78334060 Score: 135
Period size: 27 Copynumber: 5.6 Consensus size: 27
78333900 ATATTGAGCC
* *
78333910 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
78333937 CGCACACTTAGTGCTACGTAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
78333965 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
78333992 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
78334019 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
*
78334046 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
78334061 GTACAATTTA
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
27 79 0.77
28 24 0.23
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:78338656 original size:79 final size:81
Alignment explanation
Indices: 78338520--78338702 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
78338510 TCGAATGATG
* *
78338520 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
78338584 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
78338599 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
78338661 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* * *
78338679 ACCGGGCTATGTCCCGGAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
78338703 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.66
80 29 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:78338711 original size:40 final size:40
Alignment explanation
Indices: 78338520--78338704 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
78338510 TCGAATGATG
* * * *
78338520 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
78338560 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
78338600 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
78338639 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
78338680 -CCGGGCTATGTCCCGGAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
78338705 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:78341465 original size:40 final size:40
Alignment explanation
Indices: 78341387--78341609 Score: 310
Period size: 40 Copynumber: 5.5 Consensus size: 40
78341377 ACCCAAGTAT
* *
78341387 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
78341426 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
78341466 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
78341506 CTTCGGGACTTAGCCCGG-TATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
78341548 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
78341588 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
78341610 CATCCGAATA
Statistics
Matches: 166, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
38 1 0.01
39 20 0.12
40 108 0.65
41 1 0.01
42 28 0.17
43 8 0.05
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:78341569 original size:82 final size:80
Alignment explanation
Indices: 78341387--78341609 Score: 310
Period size: 82 Copynumber: 2.8 Consensus size: 80
78341377 ACCCAAGTAT
* * *
78341387 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
**
78341450 TCACTAGCATGAATGC
65 TCACTAGCACAAATGC
78341466 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG-TATAG-
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
78341529 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
* *
78341548 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
78341610 CATCCGAATA
Statistics
Matches: 130, Mismatches: 7, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
78 1 0.01
79 21 0.16
80 40 0.31
81 1 0.01
82 64 0.49
83 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:78341601 original size:122 final size:119
Alignment explanation
Indices: 78341387--78341609 Score: 349
Period size: 122 Copynumber: 1.8 Consensus size: 119
78341377 ACCCAAGTAT
* * *
78341387 CTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC
1 CTTCGGGACTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
**
78341452 ACTAGCATGAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
66 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
78341506 CTTCGGGACTTAGCCCGG-TATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAG-CCGGATATAGC-A--ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
*
78341570 AGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
62 AGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
78341610 CATCCGAATA
Statistics
Matches: 94, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
119 18 0.19
120 5 0.05
122 71 0.76
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (119 bp):
CTTCGGGACTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:78344975 original size:18 final size:17
Alignment explanation
Indices: 78344952--78344985 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
78344942 CTCTCCTAAA
78344952 ACGATTTCGATCTTTCTC
1 ACGA-TTCGATCTTTCTC
*
78344970 ACGATTCTATCTTTCT
1 ACGATTCGATCTTTCT
78344986 GTATGCTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.18, C:0.26, G:0.09, T:0.47
Consensus pattern (17 bp):
ACGATTCGATCTTTCTC
Found at i:78357861 original size:41 final size:41
Alignment explanation
Indices: 78357804--78357988 Score: 225
Period size: 41 Copynumber: 4.6 Consensus size: 41
78357794 CGAGCTTGGG
* *
78357804 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACTGAACTTAAT
1 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
78357845 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
1 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
* * *
78357886 TTCGAAGGGCTTTTGAGCCAGTG-TCATAACCGGACTTGGT
1 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
* * * * *
78357926 TCCGAAGGGCCTTCGAGCCAGTGGCCTAAT--CCGAGCTTGGT
1 TTCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGT
*
78357967 CTCGAAGGGC-TTTGAGCCAGTG
1 TTCGAAGGGCTTTTGAGCCAGTG
78357989 TTAAGAATCG
Statistics
Matches: 127, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 43 0.34
41 80 0.63
43 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (41 bp):
TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
Found at i:78357972 original size:81 final size:78
Alignment explanation
Indices: 78357790--78357989 Score: 231
Period size: 81 Copynumber: 2.5 Consensus size: 78
78357780 TCGGGGTGTA
* *
78357790 AATCCGAGCTTGGGTTCGAAGGGCTTTTGAGCCAGTGCTAATAACTGAACTTAATTTCGAAGGGC
1 AATCCGAGCTT-GGTTCGAAGGGCTTTTGAGCCAGTG-TAATAACCGAACTTAATTCCGAAGGGC
* *
78357855 TTTTGAGCCAGTGCT
64 CTTCGAGCCAGTGCT
* * * * **
78357870 AATAACCGAACTTAGTTTCGAAGGGCTTTTGAGCCAGTGTCATAACCGGACTTGGTTCCGAAGGG
1 AAT--CCGAGCTT-GGTTCGAAGGGCTTTTGAGCCAGTGTAATAACCGAACTTAATTCCGAAGGG
78357935 CCTTCGAGCCAGTGGCCT
63 CCTTCGAGCCAGT-G-CT
78357953 AATCCGAGCTTGGTCTCGAAGGGC-TTTGAGCCAGTGT
1 AATCCGAGCTTGGT-TCGAAGGGCTTTTGAGCCAGTGT
78357990 TAAGAATCGT
Statistics
Matches: 102, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
80 18 0.18
81 47 0.46
82 32 0.31
83 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (78 bp):
AATCCGAGCTTGGTTCGAAGGGCTTTTGAGCCAGTGTAATAACCGAACTTAATTCCGAAGGGCCT
TCGAGCCAGTGCT
Found at i:78358015 original size:81 final size:78
Alignment explanation
Indices: 78357790--78358015 Score: 226
Period size: 81 Copynumber: 2.8 Consensus size: 78
78357780 TCGGGGTGTA
* *
78357790 AATCCGAGCTTGGGTTCGAAGGGCTTTTGAGCCAGTGCTAATAAC-TGAACTTAATTTCGAAGGG
1 AATCCGAGCTT-GGTTCGAAGGGCTTTTGAGCCAGTG-TAATAACGTG-ACTTGATTCCGAAGGG
* *
78357854 CTTTTGAGCCAGTGCT
63 CCTTCGAGCCAGTGCT
* * * *
78357870 AATAACCGAACTTAGTTTCGAAGGGCTTTTGAGCCAGTGTCATAACCG-GACTTGGTTCCGAAGG
1 AAT--CCGAGCTT-GGTTCGAAGGGCTTTTGAGCCAGTGTAATAA-CGTGACTTGATTCCGAAGG
78357934 GCCTTCGAGCCAGTGGCCT
62 GCCTTCGAGCCAGT-G-CT
* *
78357953 AATCCGAGCTTGGTCTCGAAGGGC-TTTGAGCCAGTGTTAAGAATCGTG-CTTGATTCCAAAGGG
1 AATCCGAGCTTGGT-TCGAAGGGCTTTTGAGCCAGTG-TAATAA-CGTGACTTGATTCCGAAGGG
78358016 TGGTTGTGCT
Statistics
Matches: 121, Mismatches: 16, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
80 17 0.14
81 64 0.53
82 35 0.29
83 5 0.04
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (78 bp):
AATCCGAGCTTGGTTCGAAGGGCTTTTGAGCCAGTGTAATAACGTGACTTGATTCCGAAGGGCCT
TCGAGCCAGTGCT
Found at i:78359883 original size:48 final size:48
Alignment explanation
Indices: 78359825--78359918 Score: 134
Period size: 48 Copynumber: 2.0 Consensus size: 48
78359815 ATGTCTCATA
* *
78359825 TCGATGCCAATGCCATATCCCAAATATGGTCTTACATGGGATCACATG
1 TCGATACCAATGCCATATCCCAAACATGGTCTTACATGGGATCACATG
* * **
78359873 TCGATACCAATGCCATGTCCCAGACATGGTCTTGTATGGGATCACA
1 TCGATACCAATGCCATATCCCAAACATGGTCTTACATGGGATCACA
78359919 CATAACCCTA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (48 bp):
TCGATACCAATGCCATATCCCAAACATGGTCTTACATGGGATCACATG
Found at i:78372526 original size:15 final size:14
Alignment explanation
Indices: 78372506--78372568 Score: 54
Period size: 15 Copynumber: 4.3 Consensus size: 14
78372496 GAGAAACCTA
78372506 AAATAAAGAAATCC
1 AAATAAAGAAATCC
*
78372520 AACATAAATAAATCCC
1 AA-ATAAAGAAAT-CC
* *
78372536 AAATAGAGAAGTCC
1 AAATAAAGAAATCC
* *
78372550 AATATAAGGAAATCG
1 AA-ATAAAGAAATCC
78372565 AAAT
1 AAAT
78372569 TACAATACCG
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
14 8 0.21
15 26 0.68
16 4 0.11
ACGTcount: A:0.57, C:0.14, G:0.11, T:0.17
Consensus pattern (14 bp):
AAATAAAGAAATCC
Found at i:78372563 original size:30 final size:30
Alignment explanation
Indices: 78372506--78372563 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
78372496 GAGAAACCTA
*
78372506 AAATAAAGAAATCCAACATAAATAAATCCC
1 AAATAAAGAAATCCAACATAAAGAAATCCC
* * * *
78372536 AAATAGAGAAGTCCAATATAAGGAAATC
1 AAATAAAGAAATCCAACATAAAGAAATC
78372564 GAAATTACAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.57, C:0.16, G:0.10, T:0.17
Consensus pattern (30 bp):
AAATAAAGAAATCCAACATAAAGAAATCCC
Found at i:78388440 original size:28 final size:28
Alignment explanation
Indices: 78388400--78388456 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
78388390 AAAGGAGGGA
78388400 GTAAGCTTTACTCTTAGTAAATCCATAT
1 GTAAGCTTTACTCTTAGTAAATCCATAT
78388428 GTAAGCTTTACTCTTAGTAAATCCATAT
1 GTAAGCTTTACTCTTAGTAAATCCATAT
78388456 G
1 G
78388457 AAAATAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.39
Consensus pattern (28 bp):
GTAAGCTTTACTCTTAGTAAATCCATAT
Found at i:78393974 original size:13 final size:13
Alignment explanation
Indices: 78393956--78393980 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78393946 CCGTGTCCCT
78393956 CACACGGCCGTGA
1 CACACGGCCGTGA
78393969 CACACGGCCGTG
1 CACACGGCCGTG
78393981 TCTCTGCCCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.40, G:0.32, T:0.08
Consensus pattern (13 bp):
CACACGGCCGTGA
Found at i:78394220 original size:13 final size:13
Alignment explanation
Indices: 78394202--78394228 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
78394192 CATCCTACAT
78394202 AGCATAATTGAGC
1 AGCATAATTGAGC
78394215 AGCATAATTGAGC
1 AGCATAATTGAGC
78394228 A
1 A
78394229 CTTACACATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (13 bp):
AGCATAATTGAGC
Found at i:78401896 original size:13 final size:13
Alignment explanation
Indices: 78401878--78401904 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
78401868 CATCCTACAT
78401878 AGCATAATTGAGC
1 AGCATAATTGAGC
78401891 AGCATAATTGAGC
1 AGCATAATTGAGC
78401904 A
1 A
78401905 CTTACACATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (13 bp):
AGCATAATTGAGC
Found at i:78403566 original size:25 final size:25
Alignment explanation
Indices: 78403532--78403581 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
78403522 AAAAACCACT
78403532 TAGTAAAAGATGTTTATCATACATC
1 TAGTAAAAGATGTTTATCATACATC
78403557 TAGTAAAAGATGTTTATCATACATC
1 TAGTAAAAGATGTTTATCATACATC
78403582 AAACTTTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (25 bp):
TAGTAAAAGATGTTTATCATACATC
Found at i:78404214 original size:20 final size:21
Alignment explanation
Indices: 78404170--78404214 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
78404160 AGCAACTTAA
*
78404170 AAAAAACTTTAAATTGTCTCT
1 AAAATACTTTAAATTGTCTCT
*
78404191 -AAATACTTTTAATTGTC-CT
1 AAAATACTTTAAATTGTCTCT
78404210 AAAAT
1 AAAAT
78404215 TGTATTATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.42, C:0.13, G:0.04, T:0.40
Consensus pattern (21 bp):
AAAATACTTTAAATTGTCTCT
Found at i:78405621 original size:3 final size:3
Alignment explanation
Indices: 78405615--78405643 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
78405605 TTGGTTGTTG
78405615 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
78405644 TAGAACAGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:78408335 original size:23 final size:24
Alignment explanation
Indices: 78408303--78408437 Score: 98
Period size: 23 Copynumber: 5.7 Consensus size: 24
78408293 CGTTGCATGA
78408303 CTCTTTGTGAGCTTCCTGATA-GG
1 CTCTTTGTGAGCTTCCTGATATGG
* *
78408326 CTCTTCGTGAGCTTCCCGATATGG
1 CTCTTTGTGAGCTTCCTGATATGG
* * *
78408350 TTCTTTGTGAACTTCCTAATTATGG
1 CTCTTTGTGAGCTTCCTGA-TATGG
* * *
78408375 CTC-TTATGAGCTTCCCGTTATATAG
1 CTCTTTGTGAGCTT-CC-TGATATGG
* * * *
78408400 CTC-TTATAAGTTTCCTGATA-GA
1 CTCTTTGTGAGCTTCCTGATATGG
*
78408422 CTCTTTATGAGCTTCC
1 CTCTTTGTGAGCTTCC
78408438 CGCTACAAGG
Statistics
Matches: 88, Mismatches: 19, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
22 3 0.03
23 33 0.38
24 26 0.30
25 24 0.27
26 2 0.02
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.41
Consensus pattern (24 bp):
CTCTTTGTGAGCTTCCTGATATGG
Found at i:78426683 original size:21 final size:20
Alignment explanation
Indices: 78426657--78426698 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
78426647 GGACTAAATC
*
78426657 AAAAACCCTAAACATTTTTCA
1 AAAAACACTAAA-ATTTTTCA
*
78426678 AAAAACATTAAAATTTTTCA
1 AAAAACACTAAAATTTTTCA
78426698 A
1 A
78426699 TACTACAGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.52, C:0.17, G:0.00, T:0.31
Consensus pattern (20 bp):
AAAAACACTAAAATTTTTCA
Found at i:78426818 original size:12 final size:12
Alignment explanation
Indices: 78426801--78426830 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
78426791 CCTCACAAGC
78426801 CCGTGTGCCAGG
1 CCGTGTGCCAGG
*
78426813 CCGTGTGCTAGG
1 CCGTGTGCCAGG
78426825 CCGTGT
1 CCGTGT
78426831 AATAGCCTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.30, G:0.40, T:0.23
Consensus pattern (12 bp):
CCGTGTGCCAGG
Found at i:78429888 original size:42 final size:42
Alignment explanation
Indices: 78429829--78429915 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
78429819 TACGTTTAAG
78429829 ATCCACATATGATTTCTGCTAATCTTAAGCTACCTTCAAACT
1 ATCCACATATGATTTCTGCTAATCTTAAGCTACCTTCAAACT
78429871 ATCCACATATGATTTCTGCTAATCTTAAGCTACCTTCAAACT
1 ATCCACATATGATTTCTGCTAATCTTAAGCTACCTTCAAACT
78429913 ATC
1 ATC
78429916 TCGGATCACT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (42 bp):
ATCCACATATGATTTCTGCTAATCTTAAGCTACCTTCAAACT
Found at i:78431618 original size:20 final size:20
Alignment explanation
Indices: 78431593--78431637 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
78431583 AGGGACTAAA
* *
78431593 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
78431613 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
78431633 ATGAA
1 ATGAA
78431638 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:78433672 original size:40 final size:39
Alignment explanation
Indices: 78433628--78433760 Score: 124
Period size: 40 Copynumber: 3.3 Consensus size: 39
78433618 AATAGAGTAA
78433628 TAGCGGCGTTTTTAAAAAAGCGCCGCTATAGATCGACCAT
1 TAGCGGCGTTTTT-AAAAAGCGCCGCTATAGATCGACCAT
* * * * * *
78433668 TAGCGGTGCTTTTTTAAATGCGCCGCTAAAGATCTAACAT
1 TAGCGGCG-TTTTTAAAAAGCGCCGCTATAGATCGACCAT
* * * *
78433708 TAGCAGCGTTTTTCAAGAAGCGTCGCTATATATCGACC-T
1 TAGCGGCGTTTTT-AAAAAGCGCCGCTATAGATCGACCAT
*
78433747 ATAGCGGCATTTTT
1 -TAGCGGCGTTTTT
78433761 TTACGTAAGC
Statistics
Matches: 72, Mismatches: 18, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
39 6 0.08
40 61 0.85
41 5 0.07
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (39 bp):
TAGCGGCGTTTTTAAAAAGCGCCGCTATAGATCGACCAT
Found at i:78433877 original size:40 final size:40
Alignment explanation
Indices: 78433833--78433927 Score: 136
Period size: 40 Copynumber: 2.4 Consensus size: 40
78433823 CGTTTTCTAG
** *
78433833 AAAACGCCGCTAAAAATCGTCTTACAGCGGCACTTTTTAA
1 AAAACGCCGCTAAAAATCAACTTACAGCGGCACTTTTAAA
* * *
78433873 AAAACACCGCTAAAAATCAACTTATAGCGGCGCTTTTAAA
1 AAAACGCCGCTAAAAATCAACTTACAGCGGCACTTTTAAA
78433913 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
78433928 GATTAAATAG
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.41, C:0.24, G:0.14, T:0.21
Consensus pattern (40 bp):
AAAACGCCGCTAAAAATCAACTTACAGCGGCACTTTTAAA
Found at i:78434186 original size:21 final size:21
Alignment explanation
Indices: 78434162--78434207 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
78434152 TCTCTAGTCA
* **
78434162 TAAACCTTAAATTGTAAACCT
1 TAAACCCTAAATATTAAACCT
78434183 TAAACCCTAAATATTAAACCT
1 TAAACCCTAAATATTAAACCT
78434204 TAAA
1 TAAA
78434208 TTCTAAACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.48, C:0.20, G:0.02, T:0.30
Consensus pattern (21 bp):
TAAACCCTAAATATTAAACCT
Found at i:78434454 original size:12 final size:12
Alignment explanation
Indices: 78434434--78434470 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
78434424 AATAAATTTC
*
78434434 ATATGGATATAT
1 ATATTGATATAT
78434446 ATATTGATATAT
1 ATATTGATATAT
78434458 ATA-TG-TATAT
1 ATATTGATATAT
78434468 ATA
1 ATA
78434471 GATATTAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 8 0.33
11 2 0.08
12 14 0.58
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (12 bp):
ATATTGATATAT
Found at i:78437726 original size:3 final size:3
Alignment explanation
Indices: 78437718--78437757 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
78437708 ATTAATAGGA
78437718 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
78437758 GAAAGAAAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:78438164 original size:187 final size:188
Alignment explanation
Indices: 78437865--78438203 Score: 458
Period size: 187 Copynumber: 1.8 Consensus size: 188
78437855 TTTTGAAGCT
*
78437865 TTGTTATTAGTGGCGCTTTCATAAAAATGCCACAAAACATCTATTAAGAGAATGTAAAACGGCAT
1 TTGTTATTAGTGGCGCTTTCATAAAAATGCCACAAAACATCTATAAAGAGAATGTAAAACGGCAT
* *
78437930 CGTCTACATCCTTGTTATTAGTGGCGCTTCTATAAACGCCGCAAAAGGTGAGAATTACCGGCGTT
66 CGTCTACATCCTTGTTATTAGTGGCGCTTCTATAAACGCCACAAAAGGTGAGAAATACCGGCGTT
*
78437995 TGCTCTACAAATGCCACAAAAATCTATTAACAGATTGCAAAACGACGTCGTTATTACC
131 TGCTCTACAAACGCCACAAAAATCTATTAACAGATTGCAAAACGACGTCGTTATTACC
* *
78438053 TTGTTATTAGTGGCGCTTTTTATAAAAATGCCACAAAACAT-T-TAAAGAG-ATTTCAAAACGTG
1 TTGTTATTAGTGGCGC-TTTCATAAAAATGCCACAAAACATCTATAAAGAGAATGT-AAAACG-G
* * * **
78438115 -GTCGTTTTATAGT-CTT-TTATTAGTGGCGCCTT-TATAAACGCCACAAAAGGTTTGAAATACC
63 CATCG-TCTACA-TCCTTGTTATTAGTGGCG-CTTCTATAAACGCCACAAAAGGTGAGAAATACC
* *
78438176 GGCGTTTTCTCTAGAAACGCCACAAAAA
125 GGCGTTTGCTCTACAAACGCCACAAAAA
78438204 ACCCCAATTT
Statistics
Matches: 132, Mismatches: 13, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
186 3 0.02
187 77 0.58
188 28 0.21
189 24 0.18
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.30
Consensus pattern (188 bp):
TTGTTATTAGTGGCGCTTTCATAAAAATGCCACAAAACATCTATAAAGAGAATGTAAAACGGCAT
CGTCTACATCCTTGTTATTAGTGGCGCTTCTATAAACGCCACAAAAGGTGAGAAATACCGGCGTT
TGCTCTACAAACGCCACAAAAATCTATTAACAGATTGCAAAACGACGTCGTTATTACC
Found at i:78441017 original size:23 final size:23
Alignment explanation
Indices: 78440987--78441036 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
78440977 AACATTAATC
78440987 AAATGTATGAATTGCAGCCCTTT
1 AAATGTATGAATTGCAGCCCTTT
78441010 AAATGTATGAATTGCAGCCCTTT
1 AAATGTATGAATTGCAGCCCTTT
78441033 AAAT
1 AAAT
78441037 AAACTTGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (23 bp):
AAATGTATGAATTGCAGCCCTTT
Found at i:78441869 original size:9 final size:9
Alignment explanation
Indices: 78441846--78441973 Score: 130
Period size: 9 Copynumber: 13.6 Consensus size: 9
78441836 ATTGATCATT
*
78441846 ACTTAAATA
1 ACTTACATA
*
78441855 AATTACATA
1 ACTTACATA
78441864 ACTTACATA
1 ACTTACATA
*
78441873 ACTTATATA
1 ACTTACATA
78441882 ACTTACATA
1 ACTTACATA
*
78441891 ATTTACATAACA
1 ACTTACAT---A
78441903 ACTTACATA
1 ACTTACATA
*
78441912 ACTCACATA
1 ACTTACATA
78441921 ACTTACATA
1 ACTTACATA
*
78441930 ATTTACATA
1 ACTTACATA
*
78441939 ACTCACATA
1 ACTTACATA
*
78441948 ACGTACATAACA
1 ACTTACAT---A
78441960 ACTTACATA
1 ACTTACATA
78441969 ACTTA
1 ACTTA
78441974 ACTAATACAT
Statistics
Matches: 98, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
9 82 0.84
12 16 0.16
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.32
Consensus pattern (9 bp):
ACTTACATA
Found at i:78441922 original size:39 final size:39
Alignment explanation
Indices: 78441863--78441940 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
78441853 TAAATTACAT
* *
78441863 AACTTACATAACTTATATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
78441902 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
78441941 TCACATAACG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAAC
Found at i:78441936 original size:48 final size:48
Alignment explanation
Indices: 78441857--78441949 Score: 141
Period size: 48 Copynumber: 1.9 Consensus size: 48
78441847 CTTAAATAAA
* * * *
78441857 TTACATAACTTACATAACTTATATAACTTACATAATTTACATAACAAC
1 TTACATAACTCACATAACTTACATAACTTACATAACTCACATAACAAC
*
78441905 TTACATAACTCACATAACTTACATAATTTACATAACTCACATAAC
1 TTACATAACTCACATAACTTACATAACTTACATAACTCACATAAC
78441950 GTACATAACA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.45, C:0.22, G:0.00, T:0.33
Consensus pattern (48 bp):
TTACATAACTCACATAACTTACATAACTTACATAACTCACATAACAAC
Found at i:78441940 original size:57 final size:57
Alignment explanation
Indices: 78441859--78441971 Score: 181
Period size: 57 Copynumber: 2.0 Consensus size: 57
78441849 TAAATAAATT
* * **
78441859 ACATAACTTACATAACTTATATAACTTACATAATTTACATAACAACTTACATAACTC
1 ACATAACTTACATAACTTACATAACTCACATAACGTACATAACAACTTACATAACTC
*
78441916 ACATAACTTACATAATTTACATAACTCACATAACGTACATAACAACTTACATAACT
1 ACATAACTTACATAACTTACATAACTCACATAACGTACATAACAACTTACATAACT
78441972 TAACTAATAC
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.46, C:0.22, G:0.01, T:0.31
Consensus pattern (57 bp):
ACATAACTTACATAACTTACATAACTCACATAACGTACATAACAACTTACATAACTC
Found at i:78443823 original size:12 final size:12
Alignment explanation
Indices: 78443806--78443831 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
78443796 ACGATCCAGG
78443806 GATGAATCTGAT
1 GATGAATCTGAT
78443818 GATGAATCTGAT
1 GATGAATCTGAT
78443830 GA
1 GA
78443832 GGAGGATGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (12 bp):
GATGAATCTGAT
Found at i:78447916 original size:43 final size:42
Alignment explanation
Indices: 78447856--78447975 Score: 127
Period size: 43 Copynumber: 2.8 Consensus size: 42
78447846 CGTTTGTTTG
* *
78447856 AAAAAAAGGCCGCTAAAGATCATGACTTTTAGCGATGCTTTTT
1 AAAAAAACGCCACTAAAGATCATGACTTTTAGCGATG-TTTTT
* * * * *
78447899 ATAAAAATGCCACTAAAGACCAAGACTTTTAGCGGTGTTTTT
1 AAAAAAACGCCACTAAAGATCATGACTTTTAGCGATGTTTTT
78447941 AAAAAAAGCGCCACTAAA-AGTCATGA-TCTTTAGCG
1 AAAAAAA-CGCCACTAAAGA-TCATGACT-TTTAGCG
78447976 GCATTTTTTT
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
42 13 0.20
43 51 0.80
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (42 bp):
AAAAAAACGCCACTAAAGATCATGACTTTTAGCGATGTTTTT
Found at i:78448317 original size:42 final size:42
Alignment explanation
Indices: 78448270--78448349 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 42
78448260 AGAATTAAGC
* *
78448270 ACACGGAC-AGAGACACGGGCGTGTGTCTCAGCCGTGTGTGCT
1 ACACGGACTAGA-ACACGGACATGTGTCTCAGCCGTGTGTGCT
* **
78448312 ACACGGCCTAGAACACGGACATGTGTCTTGGCCGTGTG
1 ACACGGACTAGAACACGGACATGTGTCTCAGCCGTGTG
78448350 AAACATGCAC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
42 29 0.91
43 3 0.09
ACGTcount: A:0.20, C:0.26, G:0.34, T:0.20
Consensus pattern (42 bp):
ACACGGACTAGAACACGGACATGTGTCTCAGCCGTGTGTGCT
Found at i:78451845 original size:916 final size:918
Alignment explanation
Indices: 78450073--78451909 Score: 3597
Period size: 916 Copynumber: 2.0 Consensus size: 918
78450063 ACTATCACAA
78450073 TTTATATATGGTATGTATAGCCAGACTCTCACACACGCAATGTTAGTACGAGAATTGACTAAACC
1 TTTATATATGGTATGTATAGCCAGACTCTCACACACGCAATGTTAGTACGAGAATTGACTAAACC
*
78450138 ATAGCTCTGATACCACTGAATGTAACACCCCTTACCTGTATTCAATGCCGAAATAGGATACAAGG
66 ATAGCTCTGATACCACTGAATGTAACACCCCTTACCTGTATTCAATGCCAAAATAGGATACAAGG
78450203 CATTATCGGACTTACATCACAAGCAAATATACAAATCGAGACCTAAATTTTCATCCAAATCAAAA
131 CATTATCGGACTTACATCACAAGCAAATATACAAATCGAGACCTAAATTTTCATCCAAATCAAAA
78450268 CCATTTGTATTCAATCATAAAGTCCCCAATGCGAGCCTACGAGGCCCAAAACATGCTTTGAAAGT
196 CCATTTGTATTCAATCATAAAGTCCCCAATGCGAGCCTACGAGGCCCAAAACATGCTTTGAAAGT
78450333 GGTTTGAGACTAAACTTACAACTCAAGAAACTTTTTTTTACAAAACATAGAAAATTTTTGCTATG
261 GGTTTGAGACTAAACTTACAACTCAAGAAACTTTTTTTTACAAAACATAGAAAATTTTTGCTATG
78450398 AACAGGGGTCACATGCCCGTATGGTTTGGGACACGCCCGTGTGGTCACACACGTCTATGTCCCTA
326 AACAGGGGTCACATGCCCGTATGGTTTGGGACACGCCCGTGTGGTCACACACGTCTATGTCCCTA
78450463 ACCCGTGTAACTCTCTGTTTTGTAATGCATGAACAAATTAAGATCACATGGCCAAGTCACATGCC
391 ACCCGTGTAACTCTCTGTTTTGTAATGCATGAACAAATTAAGATCACATGGCCAAGTCACATGCC
*
78450528 CTTGTGCTAGGTCGTGTGGTTAATTTAATTTTTATAAAATAGGTGTAGACTTCACACGGTCAGGA
456 CTTGTGCTAGGTCGTGTGGTTAATTTAACTTTTATAAAATAGGTGTAGACTTCACACGGTCAGGA
78450593 CACATGCCCGTTCCTGAGGCTGTGTCCCTCACATGGCTGAGACAGATGCCCCTGTCTCTACGCAT
521 CACATGCCCGTTCCTGAGGCTGTGTCCCTCACATGGCTGAGACAGATGCCCCTGTCTCTACGCAT
*
78450658 GTGCTCAACTCTGAGCATTATATTTCTCAAAATTAATGTACAGGGGACACACGGCCGAAACACAT
586 GTGCTCAACTCTAAGCATTATATTTCTCAAAATTAATGTACAGGGGACACACGGCCGAAACACAT
78450723 GCCTATGGGGAAAACAGTGTGTCTGTGACACCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTCGG
651 GCCTATGGGGAAAACAGTGTGTCTGTGACACCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTCGG
78450788 GACCGCTAAACCGAGTCACCAAATTATTTGAATATGATATTTATTGTCTAAAATAAATGTGTGAA
716 GACCGCTAAACCGAGTCACCAAATTATTTGAATATGATATTTATTGTCTAAAATAAATGTGTGAA
78450853 AATTTTAAGCTTCGATTTAGTAAATTTCATGTGAATTTAGTCAATAGGACTTATGTGTGACATTT
781 AATTTTAAGCTTCGATTTAGTAAATTTCATGTGAATTTAGTCAATAGGACTTATGTGTGACATTT
78450918 TTGAAATGTGATAGATCAAAACATAAGGACCTATTAGTGCATGTTGAAAAA-GGGGGGACTTGCA
846 TTGAAATGTGATAGATCAAAACATAAGGACCTATTAGTGCATGTTGAAAAAGGGGGGGACTTGCA
78450982 TGTCAATT
911 TGTCAATT
78450990 TTTATATATGGTATGTATAGCCAGACTCTCACACACGCAATGTTAGTACGAGAATTGACTAAACC
1 TTTATATATGGTATGTATAGCCAGACTCTCACACACGCAATGTTAGTACGAGAATTGACTAAACC
78451055 ATAGCTCTGATACCACTGAATGTAACACCCCTTACCTGTATTCAATGCCAAAATAGGATACAAGG
66 ATAGCTCTGATACCACTGAATGTAACACCCCTTACCTGTATTCAATGCCAAAATAGGATACAAGG
78451120 CATTATCGGACTTACATCACAAGCAAATATACAAATCGAGACCTAAATTTTCATCCAAATCAAAA
131 CATTATCGGACTTACATCACAAGCAAATATACAAATCGAGACCTAAATTTTCATCCAAATCAAAA
*
78451185 CCATTTGTATTCAATCATAAAGTCCCCAATGCGAGCCTACGAGGCCCAAAACATGTTTTGAAAGT
196 CCATTTGTATTCAATCATAAAGTCCCCAATGCGAGCCTACGAGGCCCAAAACATGCTTTGAAAGT
78451250 GGTTTGAGACTAAACTTACAACTCAAGAAAC-TTTTTTTACAAAACATAGAAAATTTTTGCTATG
261 GGTTTGAGACTAAACTTACAACTCAAGAAACTTTTTTTTACAAAACATAGAAAATTTTTGCTATG
78451314 AACAGGGGTCACATGCCCGTATGGTTTGGGACACGCCCGTGTGGTCACACACGTCTATGTCCCTA
326 AACAGGGGTCACATGCCCGTATGGTTTGGGACACGCCCGTGTGGTCACACACGTCTATGTCCCTA
78451379 ACCCGTGTAACTCTCTGTTTTGTAATGCATGAACAAATTAAGATCACATGGCCAAGTCACATGCC
391 ACCCGTGTAACTCTCTGTTTTGTAATGCATGAACAAATTAAGATCACATGGCCAAGTCACATGCC
78451444 CTTGTGCTAGGTCGTGTGGTTAATTTAACTTTTATAAAATAGGTGTAGACTTCACACGGTCAGGA
456 CTTGTGCTAGGTCGTGTGGTTAATTTAACTTTTATAAAATAGGTGTAGACTTCACACGGTCAGGA
78451509 CACATGCCCGTTCCTGAGGCTGTGTCCCTCACATGGCTGAGACAGATGCCCCTGTCTCTACGCAT
521 CACATGCCCGTTCCTGAGGCTGTGTCCCTCACATGGCTGAGACAGATGCCCCTGTCTCTACGCAT
*
78451574 GTGCTCAACTCTAAGCATTATATTTCTCAAAATTAATGTGCAGGGGACACACGGCCGAAACACAT
586 GTGCTCAACTCTAAGCATTATATTTCTCAAAATTAATGTACAGGGGACACACGGCCGAAACACAT
* *
78451639 GCCTATGGGGAAAGCAGTGTGTCTGTGACACCCCTAAAGTGACCTTAGTCGGAAAGCGGTTTCGG
651 GCCTATGGGGAAAACAGTGTGTCTGTGACACCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTCGG
78451704 GACCGCTAAACCGAGTCACCAAATTATTTGAATATGATATTTATTGTCTAAAATAAATGTGTGAA
716 GACCGCTAAACCGAGTCACCAAATTATTTGAATATGATATTTATTGTCTAAAATAAATGTGTGAA
78451769 AATTTTAAGCTTCGATTTAGTAAATTTCATGTGAATTTAGTCAATAGGACTTATGTGTGACATTT
781 AATTTTAAGCTTCGATTTAGTAAATTTCATGTGAATTTAGTCAATAGGACTTATGTGTGACATTT
78451834 TTGAAATGTGATAGATCAAAACATAAGGACCTATTAGTGCATGTTGAAAAAGGGGGGGACTTGCA
846 TTGAAATGTGATAGATCAAAACATAAGGACCTATTAGTGCATGTTGAAAAAGGGGGGGACTTGCA
78451899 TGTCAATT
911 TGTCAATT
78451907 TTT
1 TTT
78451910 CCCCCCATCT
Statistics
Matches: 912, Mismatches: 7, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
916 599 0.66
917 313 0.34
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (918 bp):
TTTATATATGGTATGTATAGCCAGACTCTCACACACGCAATGTTAGTACGAGAATTGACTAAACC
ATAGCTCTGATACCACTGAATGTAACACCCCTTACCTGTATTCAATGCCAAAATAGGATACAAGG
CATTATCGGACTTACATCACAAGCAAATATACAAATCGAGACCTAAATTTTCATCCAAATCAAAA
CCATTTGTATTCAATCATAAAGTCCCCAATGCGAGCCTACGAGGCCCAAAACATGCTTTGAAAGT
GGTTTGAGACTAAACTTACAACTCAAGAAACTTTTTTTTACAAAACATAGAAAATTTTTGCTATG
AACAGGGGTCACATGCCCGTATGGTTTGGGACACGCCCGTGTGGTCACACACGTCTATGTCCCTA
ACCCGTGTAACTCTCTGTTTTGTAATGCATGAACAAATTAAGATCACATGGCCAAGTCACATGCC
CTTGTGCTAGGTCGTGTGGTTAATTTAACTTTTATAAAATAGGTGTAGACTTCACACGGTCAGGA
CACATGCCCGTTCCTGAGGCTGTGTCCCTCACATGGCTGAGACAGATGCCCCTGTCTCTACGCAT
GTGCTCAACTCTAAGCATTATATTTCTCAAAATTAATGTACAGGGGACACACGGCCGAAACACAT
GCCTATGGGGAAAACAGTGTGTCTGTGACACCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTCGG
GACCGCTAAACCGAGTCACCAAATTATTTGAATATGATATTTATTGTCTAAAATAAATGTGTGAA
AATTTTAAGCTTCGATTTAGTAAATTTCATGTGAATTTAGTCAATAGGACTTATGTGTGACATTT
TTGAAATGTGATAGATCAAAACATAAGGACCTATTAGTGCATGTTGAAAAAGGGGGGGACTTGCA
TGTCAATT
Found at i:78454091 original size:47 final size:47
Alignment explanation
Indices: 78454039--78454442 Score: 646
Period size: 47 Copynumber: 8.6 Consensus size: 47
78454029 GATAATTGTG
* * *
78454039 ATGTGAATGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
78454086 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
78454133 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTAATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
78454180 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
78454227 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
78454276 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
78454323 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
78454370 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
78454417 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
78454443 TCCCGAAGGG
Statistics
Matches: 334, Mismatches: 21, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 287 0.86
49 47 0.14
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:78454326 original size:190 final size:190
Alignment explanation
Indices: 78454039--78454442 Score: 681
Period size: 190 Copynumber: 2.1 Consensus size: 190
78454029 GATAATTGTG
78454039 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
78454102 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
* * * *
78454167 GCCGATGTAATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
131 GCCGATGTAATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGA
*
78454227 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
* *
78454292 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
* * * *
78454357 GCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
131 GCCGATGTAATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGA
78454417 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
78454443 TCCCGAAGGG
Statistics
Matches: 203, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
188 15 0.07
189 3 0.01
190 185 0.91
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (190 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
GCCGATGTAATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGA
Found at i:78462302 original size:21 final size:21
Alignment explanation
Indices: 78462265--78462305 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
78462255 CTTGTTCGAC
*
78462265 AATGATTCGACAGTGATTTGT
1 AATGATTCCACAGTGATTTGT
78462286 AATGATTCCACTA-TGATTTG
1 AATGATTCCAC-AGTGATTTG
78462306 GTATTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (21 bp):
AATGATTCCACAGTGATTTGT
Found at i:78462529 original size:47 final size:48
Alignment explanation
Indices: 78462417--78462547 Score: 201
Period size: 47 Copynumber: 2.8 Consensus size: 48
78462407 GTGCGAGTTA
* * * * *
78462417 TACCTTGATTCGGCTACGGGCCATGGTATAGGTATTTTGGAGAGGAGT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCTGGAGAGAAGT
*
78462465 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCTGG-GATAAGT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCTGGAGAGAAGT
78462512 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACT
78462548 TATCGATTGA
Statistics
Matches: 77, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
47 41 0.53
48 36 0.47
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (48 bp):
TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCTGGAGAGAAGT
Found at i:78488089 original size:28 final size:27
Alignment explanation
Indices: 78488026--78488177 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
78488016 ATATTAAGCC
* * *
78488026 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
78488053 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
78488081 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
78488108 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
78488136 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
78488163 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
78488178 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:78488110 original size:55 final size:55
Alignment explanation
Indices: 78488026--78488177 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
78488016 ATATTAAGCC
* * *
78488026 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
78488081 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
78488136 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
78488178 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:78505558 original size:13 final size:13
Alignment explanation
Indices: 78505542--78505566 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78505532 TGGACACACA
78505542 CCCGTGTCCTTTG
1 CCCGTGTCCTTTG
78505555 CCCGTGTCCTTT
1 CCCGTGTCCTTT
78505567 CACACGGCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.40, G:0.20, T:0.40
Consensus pattern (13 bp):
CCCGTGTCCTTTG
Found at i:78509561 original size:45 final size:47
Alignment explanation
Indices: 78509458--78509586 Score: 149
Period size: 45 Copynumber: 2.8 Consensus size: 47
78509448 ATGTCTCGTA
* *
78509458 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTA-TCCTCATCGAG
1 GCCGATGCATGTCCTAGACATGTCTTACACTGGC-ACTCCTCATCAAG
* * * *
78509505 GTCGATGCATGT-C-GGACATGTCTTACACTGGCACTCGTC-TCAAT
1 GCCGATGCATGTCCTAGACATGTCTTACACTGGCACTCCTCATCAAG
78509549 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCAC
1 GCCGATG-CATGTCCTAGACAT-GTCTTACACTGGCAC
78509587 ACAAATTACC
Statistics
Matches: 70, Mismatches: 7, Indels: 9
0.81 0.08 0.10
Matches are distributed among these distances:
44 10 0.14
45 27 0.39
46 2 0.03
47 16 0.23
48 15 0.21
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.26
Consensus pattern (47 bp):
GCCGATGCATGTCCTAGACATGTCTTACACTGGCACTCCTCATCAAG
Found at i:78515410 original size:19 final size:19
Alignment explanation
Indices: 78515365--78515411 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
78515355 TAAATATTAA
*
78515365 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
78515384 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
78515403 AATAAAAAT
1 AATAAAAAT
78515412 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:78515859 original size:23 final size:23
Alignment explanation
Indices: 78515833--78515926 Score: 98
Period size: 23 Copynumber: 4.0 Consensus size: 23
78515823 TTCCCGCAGC
* **
78515833 TAAACACTTCAATTTGCAGTACT
1 TAAACACTTCAATTTACAACACT
* *
78515856 TAAAACCCTTCAATTTACAACATT
1 T-AAACACTTCAATTTACAACACT
* *
78515880 TAAGCACTTCAATTTACAACATT
1 TAAACACTTCAATTTACAACACT
* *
78515903 TAAACACTTCAATTTGCAGCACT
1 TAAACACTTCAATTTACAACACT
78515926 T
1 T
78515927 TAATTTAGTA
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
23 41 0.69
24 18 0.31
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.34
Consensus pattern (23 bp):
TAAACACTTCAATTTACAACACT
Found at i:78521278 original size:23 final size:22
Alignment explanation
Indices: 78521252--78521329 Score: 95
Period size: 23 Copynumber: 3.4 Consensus size: 22
78521242 ATATTAAATA
*
78521252 TTAAATATTAAGTTTTTAAGTTT
1 TTAAATTTTAAGTTTTTAA-TTT
*
78521275 TTAAGTTTTTAAGTTTTTAATTT
1 TTAA-ATTTTAAGTTTTTAATTT
78521298 TTAAATTTTTTAA-TTTTTAATTT
1 TTAAA--TTTTAAGTTTTTAATTT
78521321 TTAAATTTT
1 TTAAATTTT
78521330 TTGAAGATTT
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
21 4 0.08
23 26 0.53
24 19 0.39
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (22 bp):
TTAAATTTTAAGTTTTTAATTT
Found at i:78521355 original size:8 final size:8
Alignment explanation
Indices: 78521259--78521355 Score: 99
Period size: 8 Copynumber: 11.9 Consensus size: 8
78521249 ATATTAAATA
*
78521259 TTAAGTTT
1 TTAAATTT
*
78521267 TTAAGTTT
1 TTAAATTT
*
78521275 TTAAGTTT
1 TTAAATTT
*
78521283 TTAAGTTT
1 TTAAATTT
78521291 TT-AATTT
1 TTAAATTT
78521298 TTAAATTT
1 TTAAATTT
*
78521306 TTTAATTT
1 TTAAATTT
78521314 TT-AATTT
1 TTAAATTT
78521321 TTAAATTTT
1 TTAAA-TTT
78521330 TTGAAGATTT
1 TT-AA-ATTT
78521340 TTATAATTT
1 TTA-AATTT
78521349 TTAAATT
1 TTAAATT
78521356 ATCATATAAA
Statistics
Matches: 81, Mismatches: 2, Indels: 12
0.85 0.02 0.13
Matches are distributed among these distances:
7 13 0.16
8 46 0.57
9 13 0.16
10 8 0.10
11 1 0.01
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (8 bp):
TTAAATTT
Found at i:78522885 original size:27 final size:28
Alignment explanation
Indices: 78522809--78522887 Score: 115
Period size: 28 Copynumber: 2.9 Consensus size: 28
78522799 GCGCCGCTAA
*
78522809 TGCTCTGGTTTTTAGCGGCGTTTTCTAT
1 TGCTCTGATTTTTAGCGGCGTTTTCTAT
* **
78522837 TGCTCTGTTTTTTAGCTACGTTTTCTAT
1 TGCTCTGATTTTTAGCGGCGTTTTCTAT
78522865 TGCTCT-ATTTTTAGCGGCGTTTT
1 TGCTCTGATTTTTAGCGGCGTTTT
78522888 ACCAAAAACG
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
27 14 0.31
28 31 0.69
ACGTcount: A:0.09, C:0.18, G:0.20, T:0.53
Consensus pattern (28 bp):
TGCTCTGATTTTTAGCGGCGTTTTCTAT
Found at i:78524616 original size:47 final size:48
Alignment explanation
Indices: 78524414--78524685 Score: 215
Period size: 47 Copynumber: 5.7 Consensus size: 48
78524404 GTTAAGTTGT
* * * *
78524414 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTATCCTCATCGAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCCTCAT-TAGGC
* * * * *
78524463 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTGCGT-ATCTATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-AT-CCTCAT-TAGGC
** * *
78524513 TAATGCCATGTCCCAGACATGGTCTTACACTGAC-ATGTCTCA-TA-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTAT-CCTCATTAGGC
* *
78524559 CGATG-CATGTCCTAGACAT-GTTTTACACTGGCTATCCTCATTGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCCTCATT-AGGC
* * *
78524606 CGATG-CATGTCCCGGACAT-GTCTTACACTGGC-ACTCGTCTCA--ATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TC--CTCATTAGGC
*
78524652 CGATGCCATGTCCTAGACATGGTCTTACACTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC
78524686 ACACAAATTA
Statistics
Matches: 183, Mismatches: 28, Indels: 25
0.78 0.12 0.11
Matches are distributed among these distances:
44 15 0.08
45 16 0.09
46 13 0.07
47 47 0.26
48 16 0.09
49 39 0.21
50 35 0.19
51 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCCTCATTAGGC
Found at i:78550857 original size:22 final size:23
Alignment explanation
Indices: 78550826--78550868 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
78550816 GGTTGAACTT
78550826 GATAGGAAAAACACGGGCGTGGG
1 GATAGGAAAAACACGGGCGTGGG
*
78550849 GATA-GAAAACCACGGGCGTG
1 GATAGGAAAAACACGGGCGTG
78550869 CCAGGGACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.35, C:0.16, G:0.40, T:0.09
Consensus pattern (23 bp):
GATAGGAAAAACACGGGCGTGGG
Found at i:78552927 original size:6 final size:6
Alignment explanation
Indices: 78552901--78552970 Score: 67
Period size: 6 Copynumber: 11.8 Consensus size: 6
78552891 TGAATCCTCC
*
78552901 TATTTT T-TTATT TATTCT TATTTT TA-TTT TA-TTT TA-TTT TATTTT
1 TATTTT TATT-TT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
*
78552946 ATTTATTT TATTTT TATTTT TATTT
1 -TAT-TTT TATTTT TATTTT TATTT
78552971 AAATTTTATT
Statistics
Matches: 55, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
5 17 0.31
6 29 0.53
7 6 0.11
8 3 0.05
ACGTcount: A:0.19, C:0.01, G:0.00, T:0.80
Consensus pattern (6 bp):
TATTTT
Found at i:78552932 original size:5 final size:5
Alignment explanation
Indices: 78552906--78552990 Score: 88
Period size: 5 Copynumber: 16.8 Consensus size: 5
78552896 CCTCCTATTT
78552906 TTTTA -TTTA TTCTTA TTTTTA TTTTA TTTTA TTTTA TTTTA -TTTA TTTTA
1 TTTTA TTTTA TT-TTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
*
78552956 TTTTTA TTTTTA TTTAAA TTTTA --TTA TTTTA TTTT
1 -TTTTA -TTTTA TTT-TA TTTTA TTTTA TTTTA TTTT
78552991 GAAAGACATA
Statistics
Matches: 70, Mismatches: 2, Indels: 16
0.80 0.02 0.18
Matches are distributed among these distances:
3 3 0.04
4 8 0.11
5 36 0.51
6 21 0.30
7 2 0.03
ACGTcount: A:0.21, C:0.01, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:78552947 original size:36 final size:37
Alignment explanation
Indices: 78552906--78552990 Score: 122
Period size: 36 Copynumber: 2.4 Consensus size: 37
78552896 CCTCCTATTT
*
78552906 TTTTATTTATTCTTATTTTTA-TTTTATTT-TATTTTA
1 TTTTATTTATT-TTATTTTTATTTTTATTTAAATTTTA
78552942 TTTTATTTATTTTATTTTTATTTTTATTTAAATTTTA
1 TTTTATTTATTTTATTTTTATTTTTATTTAAATTTTA
*
78552979 TTAT-TTTATTTT
1 TTTTATTTATTTT
78552991 GAAAGACATA
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
35 9 0.20
36 27 0.60
37 9 0.20
ACGTcount: A:0.21, C:0.01, G:0.00, T:0.78
Consensus pattern (37 bp):
TTTTATTTATTTTATTTTTATTTTTATTTAAATTTTA
Found at i:78553022 original size:24 final size:24
Alignment explanation
Indices: 78552995--78553042 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
78552985 TATTTTGAAA
78552995 GACATATCTATATTAGTAAATTTT
1 GACATATCTATATTAGTAAATTTT
*
78553019 GACATATCTATATTATTAAATTTT
1 GACATATCTATATTAGTAAATTTT
78553043 ACTTTTTCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.08, G:0.06, T:0.48
Consensus pattern (24 bp):
GACATATCTATATTAGTAAATTTT
Done.