Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 24 of 333
Found at i:6945854 original size:194 final size:199
Alignment explanation
Indices: 6945543--6946025 Score: 568
Period size: 194 Copynumber: 2.4 Consensus size: 199
6945533 TTTTTTTAAC
* * * **
6945543 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
1 AACAGAAACTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACATCTCGCAATATGAGTTGA-
** * * ** *
6945608 TTTTTTTTAACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAA
65 --TTTTAAAAC-ACAAAAATTGAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTAGCAA
* *
6945673 TATGAGTTGATTTTGAAAAA-CAAAAATTAAAAGGCTT-AACTCACCTCTCGCAATATGAG-TCA
127 TATGAGCTGATTTTGAAAAAGCAAAAATTAAAAGG-TTCAACCCACCTCTCGCAATATGAGTTCA
6945735 AT-TT-A-A
191 ATCTTGACA
* * * * * *
6945741 AACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
1 AACAGAAACTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACATCTCGCAATATGAGTTGAT
* *
6945806 ATTAAAACACAAAAATTGAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTTGCAATATG
66 TTTAAAACACAAAAATTGAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTAGCAATATG
* * * *
6945871 AGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTT
131 AGCTGATTTTGAAAAAGCAAAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTCAATCTT
6945936 GACA
196 GACA
* * * * * *
6945940 AACAGAAATTGAAATTACCTTATCGTGTCCTGAGGCTCAACTCACATCTAGCAATATGAGTTGAT
1 AACAGAAACTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACATCTCGCAATATGAGTTGAT
6946005 TTTGAAAA-ACAAAAATT-AAAA
66 TTT-AAAACACAAAAATTGAAAA
6946026 GGCTTAACTC
Statistics
Matches: 240, Mismatches: 38, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
194 68 0.28
195 38 0.16
196 3 0.01
197 2 0.01
198 60 0.25
199 65 0.27
200 4 0.02
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.27
Consensus pattern (199 bp):
AACAGAAACTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACATCTCGCAATATGAGTTGAT
TTTAAAACACAAAAATTGAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTAGCAATATG
AGCTGATTTTGAAAAAGCAAAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTCAATCTT
GACA
Found at i:6946005 original size:127 final size:123
Alignment explanation
Indices: 6945773--6946146 Score: 450
Period size: 127 Copynumber: 3.0 Consensus size: 123
6945763 GCGTGCCCCG
*
6945773 AGGC-TCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGC
1 AGGCTTCAACTCACCTCTCGCAATATGAGTTG--ATTTAAA-ACAAAAATTGAAAATACCTCAGC
* * * * * *
6945837 GTACCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAA
63 GTGCCCCGAGGCTCAACTCACATCTAGCAATATGAGTTGATTTTGAAAAA-CAAAAATTAAA
* * * * *
6945899 AGG-TTCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTTAT
1 AGGCTTCAACTCACCTCTCGCAATATGAGTTGA-T-TT-A-AAACAAAAATTGAAAATACCTCAG
* *
6945963 CGTGTCCTGAGGCTCAACTCACATCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
62 CGTGCCCCGAGGCTCAACTCACATCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
** * * *
6946025 AGGCTT-AACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTG
1 AGGCTTCAACTCACCTCTCGCAATATGAGTTGATTTAAAACAAAAATTGAAAATACCTCAGCGTG
* * *
6946089 CCCCGAGGCTCAACTCACTTCTCGTAATATGAGTTGATTTTGAAAAA-AAAAATTAAA
66 CCCCGAGGCTCAACTCACATCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
6946146 A
1 A
6946147 ATACCTCAAC
Statistics
Matches: 214, Mismatches: 28, Indels: 17
0.83 0.11 0.07
Matches are distributed among these distances:
121 11 0.05
122 64 0.30
123 1 0.00
124 3 0.01
125 2 0.01
126 65 0.30
127 66 0.31
128 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.26
Consensus pattern (123 bp):
AGGCTTCAACTCACCTCTCGCAATATGAGTTGATTTAAAACAAAAATTGAAAATACCTCAGCGTG
CCCCGAGGCTCAACTCACATCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
Found at i:6946171 original size:71 final size:70
Alignment explanation
Indices: 6946025--6946200 Score: 203
Period size: 71 Copynumber: 2.5 Consensus size: 70
6946015 AAAAATTAAA
* * * * * * * *
6946025 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCAGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAAAAAAAACTAAAAATACCTCAACGAG
6946089 CCCCG
66 CCCCG
* *
6946094 AGGCTCAACTCACTTCTCGTAATATGAGTTGATTTTGAAAAAAAAAATTAAAAATACCTCAACGA
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAAAAAAAACTAAAAATACCTCAACGA
* **
6946159 GTCTTG
65 GCCCCG
6946165 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
6946201 CCTTGGAAAG
Statistics
Matches: 90, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
69 25 0.28
70 6 0.07
71 59 0.66
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.28
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAAAAAAAACTAAAAATACCTCAACGAG
CCCCG
Found at i:6947112 original size:15 final size:14
Alignment explanation
Indices: 6947088--6947140 Score: 61
Period size: 15 Copynumber: 3.6 Consensus size: 14
6947078 TTCATCTTAA
* *
6947088 TTTTTCTTTTTCTT
1 TTTTTTTTTTTGTT
6947102 TTTTTGTTTTTTGTT
1 TTTTT-TTTTTTGTT
6947117 TTTTATTTTTTTGTT
1 TTTT-TTTTTTTGTT
6947132 GTTTTTTTT
1 -TTTTTTTT
6947141 ATTTTTTTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
14 5 0.15
15 24 0.71
16 5 0.15
ACGTcount: A:0.02, C:0.04, G:0.08, T:0.87
Consensus pattern (14 bp):
TTTTTTTTTTTGTT
Found at i:6947118 original size:20 final size:21
Alignment explanation
Indices: 6947089--6947150 Score: 81
Period size: 22 Copynumber: 2.9 Consensus size: 21
6947079 TCATCTTAAT
* *
6947089 TTTTCTTTTTCTTTTTTTGTTT
1 TTTT-TTTTTATTTTTTTGTTG
6947111 TTTGTTTTTTATTTTTTTGTTG
1 TTT-TTTTTTATTTTTTTGTTG
6947133 -TTTTTTTTATTTTTTTGT
1 TTTTTTTTTATTTTTTTGT
6947151 CTACTTTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
20 16 0.43
21 2 0.05
22 18 0.49
23 1 0.03
ACGTcount: A:0.03, C:0.03, G:0.08, T:0.85
Consensus pattern (21 bp):
TTTTTTTTTATTTTTTTGTTG
Found at i:6947119 original size:22 final size:21
Alignment explanation
Indices: 6947094--6947150 Score: 80
Period size: 20 Copynumber: 2.7 Consensus size: 21
6947084 TTAATTTTTC
* *
6947094 TTTTTCTTTTTTTGTTTTTTGT
1 TTTTTATTTTTTTGTTTGTT-T
6947116 TTTTTATTTTTTTG-TTGTTT
1 TTTTTATTTTTTTGTTTGTTT
6947136 TTTTTATTTTTTTGT
1 TTTTTATTTTTTTGT
6947151 CTACTTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
20 15 0.47
21 4 0.12
22 13 0.41
ACGTcount: A:0.04, C:0.02, G:0.09, T:0.86
Consensus pattern (21 bp):
TTTTTATTTTTTTGTTTGTTT
Found at i:6947158 original size:21 final size:20
Alignment explanation
Indices: 6947115--6947161 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
6947105 TTGTTTTTTG
**
6947115 TTTTTTATTTTTTTGTTGTT
1 TTTTTTATTTTTTTGTTACT
6947135 TTTTTTATTTTTTTGTCTACT
1 TTTTTTATTTTTTTGT-TACT
6947156 TTTTTT
1 TTTTTT
6947162 CAGGCATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 16 0.67
21 8 0.33
ACGTcount: A:0.06, C:0.04, G:0.06, T:0.83
Consensus pattern (20 bp):
TTTTTTATTTTTTTGTTACT
Found at i:6947161 original size:1 final size:1
Alignment explanation
Indices: 6947088--6947148 Score: 50
Period size: 1 Copynumber: 61.0 Consensus size: 1
6947078 TTCATCTTAA
* * * * * * * *
6947088 TTTTTCTTTTTCTTTTTTTGTTTTTTGTTTTTTATTTTTTTGTTGTTTTTTTTATTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
6947149 GTCTACTTTT
Statistics
Matches: 44, Mismatches: 16, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.03, C:0.03, G:0.07, T:0.87
Consensus pattern (1 bp):
T
Found at i:6961835 original size:17 final size:19
Alignment explanation
Indices: 6961815--6961851 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
6961805 ATTTTACAAA
6961815 TAATTA-ATAAA-TTATAT
1 TAATTATATAAATTTATAT
*
6961832 TAATTATCTAAATTTATAT
1 TAATTATATAAATTTATAT
6961851 T
1 T
6961852 TCATATATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 4 0.24
19 7 0.41
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (19 bp):
TAATTATATAAATTTATAT
Found at i:6962394 original size:32 final size:32
Alignment explanation
Indices: 6962334--6962396 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
6962324 TTTCGGAGCC
* *
6962334 ACAACTCTTGTTTAGAATAGTTGTTGTTCAGA
1 ACAACTCTTGTTTAGAATAATTGATGTTCAGA
*
6962366 ACAACTGTTGTTTGAGAATAATT-ATGTTCAG
1 ACAACTCTTGTTT-AGAATAATTGATGTTCAG
6962397 GATAAGACTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 19 0.70
33 8 0.30
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (32 bp):
ACAACTCTTGTTTAGAATAATTGATGTTCAGA
Found at i:6964284 original size:5 final size:5
Alignment explanation
Indices: 6964264--6964322 Score: 57
Period size: 5 Copynumber: 11.0 Consensus size: 5
6964254 TTCTTTTAAC
*
6964264 TTTTG TTTTA TCTTTA TTTTA TTTTA TTTTA TTTTA CTTATT- TTTTA
1 TTTTA TTTTA T-TTTA TTTTA TTTTA TTTTA TTTTA -TT-TTA TTTTA
6964311 TTATTAA TTTTA
1 TT-TT-A TTTTA
6964323 AAAATTTGAA
Statistics
Matches: 47, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
4 2 0.04
5 29 0.62
6 11 0.23
7 5 0.11
ACGTcount: A:0.20, C:0.03, G:0.02, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:6964379 original size:21 final size:21
Alignment explanation
Indices: 6964324--6964480 Score: 79
Period size: 21 Copynumber: 7.1 Consensus size: 21
6964314 TTAATTTTAA
* * **
6964324 AAATTTGAAATGTATATTTGA
1 AAATTTTAAATATATATTTTT
6964345 AATATTTTATAATATATATTTTT
1 AA-ATTTTA-AATATATATTTTT
6964368 AAATTTTAAATATATATTTTT
1 AAATTTTAAATATATATTTTT
* ** *
6964389 GGAATTATTTTTTAAA-ATTTTAAATAT
1 --AA--A--TTTTAAATA-TATATTTTT
* *
6964416 ATATTTTTGAA-AT-TATTTTTT
1 A-AATTTTAAATATATA-TTTTT
6964437 AAAATTTTAAATAT-TATTTTT
1 -AAATTTTAAATATATATTTTT
*
6964458 AAATATTAAATATATATTTTT
1 AAATTTTAAATATATATTTTT
6964479 AA
1 AA
6964481 TAATATAAAA
Statistics
Matches: 106, Mismatches: 16, Indels: 28
0.71 0.11 0.19
Matches are distributed among these distances:
20 14 0.13
21 39 0.37
22 23 0.22
23 14 0.13
25 2 0.02
26 2 0.02
27 12 0.11
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (21 bp):
AAATTTTAAATATATATTTTT
Found at i:6964388 original size:22 final size:22
Alignment explanation
Indices: 6964348--6964478 Score: 67
Period size: 22 Copynumber: 5.9 Consensus size: 22
6964338 TATTTGAAAT
6964348 ATTTTATAATATATA-TTTTTAA
1 ATTTTA-AATATATATTTTTTAA
**
6964370 ATTTTAAATATATATTTTTGGA
1 ATTTTAAATATATATTTTTTAA
*** *
6964392 ATTATTTTTTA-AAATTTTAAATATATA
1 ATT-TTAAATATATATTTT---T-TA-A
* *
6964419 TTTTTGAAAT-TAT-TTTTTAAA
1 ATTTT-AAATATATATTTTTTAA
6964440 ATTTTAAATAT-TA-TTTTTAA
1 ATTTTAAATATATATTTTTTAA
*
6964460 ATATTAAATATATATTTTT
1 ATTTTAAATATATATTTTT
6964479 AATAATATAA
Statistics
Matches: 79, Mismatches: 17, Indels: 26
0.65 0.14 0.21
Matches are distributed among these distances:
20 21 0.27
21 16 0.20
22 25 0.32
23 5 0.06
25 1 0.01
26 6 0.08
27 5 0.06
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
ATTTTAAATATATATTTTTTAA
Found at i:6964403 original size:34 final size:35
Alignment explanation
Indices: 6964363--6964461 Score: 168
Period size: 35 Copynumber: 2.9 Consensus size: 35
6964353 ATAATATATA
*
6964363 TTTTT-AAATTTTAAATATATATTTTTGGAATTAT
1 TTTTTAAAATTTTAAATATATATTTTTGAAATTAT
6964397 TTTTTAAAATTTTAAATATATATTTTTGAAATTAT
1 TTTTTAAAATTTTAAATATATATTTTTGAAATTAT
6964432 TTTTTAAAATTTTAAATAT-TATTTTT-AAAT
1 TTTTTAAAATTTTAAATATATATTTTTGAAAT
6964462 ATTAAATATA
Statistics
Matches: 63, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
33 4 0.06
34 12 0.19
35 47 0.75
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (35 bp):
TTTTTAAAATTTTAAATATATATTTTTGAAATTAT
Found at i:6964457 original size:13 final size:13
Alignment explanation
Indices: 6964406--6964465 Score: 58
Period size: 13 Copynumber: 4.9 Consensus size: 13
6964396 TTTTTTAAAA
6964406 TTTTAAATATATAT
1 TTTTAAATAT-TAT
*
6964420 TTTTGAA-ATTAT
1 TTTTAAATATTAT
*
6964432 TTTTTAA-A--A-
1 TTTTAAATATTAT
6964441 TTTTAAATATTAT
1 TTTTAAATATTAT
6964454 TTTTAAATATTA
1 TTTTAAATATTA
6964466 AATATATATT
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
9 6 0.15
10 2 0.05
12 11 0.28
13 14 0.36
14 6 0.15
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (13 bp):
TTTTAAATATTAT
Found at i:6964493 original size:21 final size:20
Alignment explanation
Indices: 6964432--6964493 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 20
6964422 TTGAAATTAT
* *
6964432 TTTTTAAAATTTTAAATATTA
1 TTTTTAAAATATAAAATA-TA
6964453 TTTTT-AAATATTAAATATATA
1 TTTTTAAAATA-TAAA-ATATA
6964474 TTTTTAATAATATAAAATAT
1 TTTTTAA-AATATAAAATAT
6964494 TTAAATATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
20 4 0.11
21 19 0.54
22 8 0.23
23 4 0.11
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTTTAAAATATAAAATATA
Found at i:6964581 original size:18 final size:19
Alignment explanation
Indices: 6964544--6964585 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
6964534 GTTTTATAAT
6964544 ATTTTAAATGTATATTTTAA
1 ATTTTAAA-GTATATTTTAA
*
6964564 ATTTTAAA-TATTTTTTAA
1 ATTTTAAAGTATATTTTAA
6964582 ATTT
1 ATTT
6964586 GTTTTATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 13 0.62
20 8 0.38
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
ATTTTAAAGTATATTTTAA
Found at i:6964622 original size:24 final size:24
Alignment explanation
Indices: 6964565--6964642 Score: 74
Period size: 24 Copynumber: 3.3 Consensus size: 24
6964555 ATATTTTAAA
*
6964565 TTTTAAATATTTTTTAAATT-TG--
1 TTTTAAAT-TATTTTAAATTATGAT
6964587 TTTTATAA-TATTTTAAATTATGAT
1 TTTTA-AATTATTTTAAATTATGAT
* *
6964611 TTTTAAATTATTTAAAATATATTAT
1 TTTTAAATTATTTTAAAT-TATGAT
6964636 TTTTAAA
1 TTTTAAA
6964643 GATATGACAT
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
21 10 0.21
22 7 0.15
23 4 0.09
24 14 0.30
25 12 0.26
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (24 bp):
TTTTAAATTATTTTAAATTATGAT
Found at i:6964648 original size:135 final size:134
Alignment explanation
Indices: 6964441--6964700 Score: 366
Period size: 135 Copynumber: 1.9 Consensus size: 134
6964431 TTTTTTAAAA
6964441 TTTTAAATATTATTTTTAAATATTAAATATATATTTTTAATAATATAAAATATTTAAATATTTTA
1 TTTTAAATATTATTTTTAAATATTAAATATATATTTTTAATAATATAAAATATTT-AATATTTTA
* * *
6964506 AATATATGACCTTTCAAATTTATTATTCGTTTTATAATATTTTAAATGTATATTTTAAATTTTAA
65 AAGATATGACATTTCAAATTTATTATTCGTTTTATAATATTTTAAATATATATTTTAAATTTTAA
6964571 ATATT
130 ATATT
* * * *
6964576 TTTTAAAT-TTGTTTTATAATATTTTAAAT-TATGATTTTTAAATTATTTAAAATATATT-AT-T
1 TTTTAAATATTATTTT-TAA-ATATTAAATATAT-ATTTTT-AATAATATAAAATAT-TTAATAT
*
6964637 TTTAAAGATATGACATTTCAAATTTATTATTTGTTTTATAATATTTTAAATATATATTTTAAAT
61 TTTAAAGATATGACATTTCAAATTTATTATTCGTTTTATAATATTTTAAATATATATTTTAAAT
6964701 ATTTTTAAAT
Statistics
Matches: 112, Mismatches: 8, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
134 6 0.05
135 75 0.67
136 16 0.14
137 13 0.12
138 2 0.02
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (134 bp):
TTTTAAATATTATTTTTAAATATTAAATATATATTTTTAATAATATAAAATATTTAATATTTTAA
AGATATGACATTTCAAATTTATTATTCGTTTTATAATATTTTAAATATATATTTTAAATTTTAAA
TATT
Found at i:6964695 original size:13 final size:13
Alignment explanation
Indices: 6964677--6964702 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6964667 TTGTTTTATA
6964677 ATATTTTAAATAT
1 ATATTTTAAATAT
6964690 ATATTTTAAATAT
1 ATATTTTAAATAT
6964703 TTTTAAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATATTTTAAATAT
Found at i:6964745 original size:29 final size:29
Alignment explanation
Indices: 6964679--6964743 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 29
6964669 GTTTTATAAT
* *
6964679 ATTTTAAATATATATTTTAAATATTTTTA
1 ATTTTAAATAAATATTTTAAATATTATTA
*
6964708 AATTTAAATAAAT-TTTTATAA-ATTATTA
1 ATTTTAAATAAATATTTTA-AATATTATTA
6964736 ATTTTAAA
1 ATTTTAAA
6964744 ATTAATAAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
28 18 0.58
29 13 0.42
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (29 bp):
ATTTTAAATAAATATTTTAAATATTATTA
Found at i:6964777 original size:135 final size:134
Alignment explanation
Indices: 6964503--6964762 Score: 294
Period size: 135 Copynumber: 1.9 Consensus size: 134
6964493 TTTAAATATT
* * *
6964503 TTAAATATATGACCTTTCAAATTTATTATTCGTTTTATAATATTTTAAATGTATATTTTAAATTT
1 TTAAAGATATGACATTTCAAATTTATTATTCGTTTTATAATATTTTAAATATATATTTTAAATTT
*** ** ** *
6964568 TAAATATTTTTTAAATTTGTTTTATAATATTTTAAATTATGATTTTTAAATTATTTAAAATATAT
66 TAAATATTAAATAAA-TTGTTTTATAATATTTTAAATTAAAATTAATAAAATATTTAAAATATAT
**
6964633 TATTT
130 TATAA
*
6964638 TTAAAGATATGACATTTCAAATTTATTATTTGTTTTATAATATTTTAAATATATATTTTAAATAT
1 TTAAAGATATGACATTTCAAATTTATTATTCGTTTTATAATATTTTAAATATATATTTT-AA-A-
*
6964703 TTTTAAAT-TTAAATAAA-T-TTTTATAA-ATTATTAATTTTAAAATTAATAAAGATATTTAAA
63 TTTTAAATATTAAATAAATTGTTTTATAATATT-TTAA-ATTAAAATTAATAAA-ATATTTAAA
6964763 CGTTTTTAAA
Statistics
Matches: 106, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
133 3 0.03
134 12 0.11
135 66 0.62
136 10 0.09
137 7 0.07
138 8 0.08
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.53
Consensus pattern (134 bp):
TTAAAGATATGACATTTCAAATTTATTATTCGTTTTATAATATTTTAAATATATATTTTAAATTT
TAAATATTAAATAAATTGTTTTATAATATTTTAAATTAAAATTAATAAAATATTTAAAATATATT
ATAA
Found at i:6968200 original size:30 final size:31
Alignment explanation
Indices: 6968157--6968234 Score: 92
Period size: 30 Copynumber: 2.6 Consensus size: 31
6968147 CGAGCCACCT
6968157 ATGTCC-GAGTGATATGAAATCAAACCA-TCA
1 ATGTCCAGAGTGATATGAAATCAAACCACT-A
* **
6968187 ATGTCCAGA-TGATATGAACTTGAACCACTA
1 ATGTCCAGAGTGATATGAAATCAAACCACTA
6968217 ATGTCCA-AGTGATATGAA
1 ATGTCCAGAGTGATATGAA
6968235 CTACTCTGCG
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
29 1 0.02
30 38 0.90
31 3 0.07
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (31 bp):
ATGTCCAGAGTGATATGAAATCAAACCACTA
Found at i:6970418 original size:27 final size:27
Alignment explanation
Indices: 6970361--6970422 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
6970351 CCTATTAAAG
* * *
6970361 AATATATTAAAAATTTAATTTTTTTTT
1 AATATATTAAAAATTTAATTATATTTA
*
6970388 AATATGTTAAAAATTTTAA-TATATTTA
1 AATATATTAAAAA-TTTAATTATATTTA
6970415 AATATATT
1 AATATATT
6970423 TAGTTATTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 24 0.83
28 5 0.17
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (27 bp):
AATATATTAAAAATTTAATTATATTTA
Found at i:6970486 original size:17 final size:17
Alignment explanation
Indices: 6970464--6970501 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
6970454 CAACATTTTC
*
6970464 TTTTAACATGTTTAAAT
1 TTTTAACATATTTAAAT
*
6970481 TTTTAATATATTTAAAT
1 TTTTAACATATTTAAAT
6970498 TTTT
1 TTTT
6970502 TACGTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.61
Consensus pattern (17 bp):
TTTTAACATATTTAAAT
Found at i:6970777 original size:16 final size:16
Alignment explanation
Indices: 6970746--6970775 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
6970736 AAATATAAAT
6970746 ATATAACTATTATTTA
1 ATATAACTATTATTTA
6970762 ATATAA-TATTATTT
1 ATATAACTATTATTT
6970776 TATAACATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
ATATAACTATTATTTA
Found at i:6974179 original size:12 final size:12
Alignment explanation
Indices: 6974162--6974192 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
6974152 GAAGCAGGAG
6974162 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
6974174 AGAAAAAGGGAA
1 AGAAAAAGAGAA
6974186 AGAAAAA
1 AGAAAAA
6974193 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:6975882 original size:20 final size:20
Alignment explanation
Indices: 6975859--6975896 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
6975849 GTTATTAAGT
6975859 TAAAAATTATGTTA-ATGATA
1 TAAAAATTA-GTTATATGATA
*
6975879 TAAATATTAGTTATATGA
1 TAAAAATTAGTTATATGA
6975897 ATGTGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (20 bp):
TAAAAATTAGTTATATGATA
Found at i:6985675 original size:39 final size:38
Alignment explanation
Indices: 6985595--6985691 Score: 115
Period size: 39 Copynumber: 2.5 Consensus size: 38
6985585 TGGATAGATT
* * *
6985595 CGATGAGGTACTAGGTACCAACTTTACTTCGGCTAGGC
1 CGATGAGGCACTAGGTGCCAACTTTACTTCGACTAGGC
* *
6985633 CGATGAGGCACTAGGTGTCAACTATTACTTCGAACTA-TC
1 CGATGAGGCACTAGGTGCCAACT-TTACTTCG-ACTAGGC
*
6985672 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTAGGTGCCA
6985692 TATTGGTGTG
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
38 20 0.40
39 27 0.54
40 3 0.06
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (38 bp):
CGATGAGGCACTAGGTGCCAACTTTACTTCGACTAGGC
Found at i:6985812 original size:18 final size:18
Alignment explanation
Indices: 6985789--6985827 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
6985779 TGAAATAAAA
6985789 AAATT-GAATTATGAATAG
1 AAATTGGAATTATG-ATAG
*
6985807 AAATTGGAATTGTGATAG
1 AAATTGGAATTATGATAG
6985825 AAA
1 AAA
6985828 GAGAAAAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.49, C:0.00, G:0.21, T:0.31
Consensus pattern (18 bp):
AAATTGGAATTATGATAG
Found at i:6986338 original size:20 final size:20
Alignment explanation
Indices: 6986315--6986352 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
6986305 GTTATTAAGT
6986315 TAAAAATTATGTTA-ATGATA
1 TAAAAATTA-GTTATATGATA
*
6986335 TAAATATTAGTTATATGA
1 TAAAAATTAGTTATATGA
6986353 ATGTGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (20 bp):
TAAAAATTAGTTATATGATA
Found at i:6987696 original size:25 final size:24
Alignment explanation
Indices: 6987668--6987740 Score: 78
Period size: 25 Copynumber: 2.9 Consensus size: 24
6987658 TATATTTTAA
6987668 ACTTGTTATATA-TTATTTTAAATT
1 ACTT-TTATATACTTATTTTAAATT
*
6987692 GACTTATATATTACTTATTTTAAAATT
1 -ACTTTTATA-TACTTATTTT-AAATT
6987719 A-TTTTATATACCTTATTTTAAA
1 ACTTTTATATA-CTTATTTTAAA
6987741 CCCCATTTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
24 9 0.21
25 20 0.48
26 8 0.19
27 5 0.12
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.55
Consensus pattern (24 bp):
ACTTTTATATACTTATTTTAAATT
Found at i:6987699 original size:20 final size:20
Alignment explanation
Indices: 6987655--6987700 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
6987645 CTTTTACATA
*
6987655 TTATA-TATTTTAAACTTGT
1 TTATATTATTTTAAACTTGC
6987674 TATATATTATTTTAAA-TTGAC
1 T-TATATTATTTTAAACTTG-C
6987695 TTATAT
1 TTATAT
6987701 ATTACTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 1 0.04
20 12 0.52
21 10 0.43
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (20 bp):
TTATATTATTTTAAACTTGC
Found at i:6987701 original size:22 final size:21
Alignment explanation
Indices: 6987656--6987704 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
6987646 TTTTACATAT
6987656 TATA-TATTTTAAACTTGTTA
1 TATATTATTTTAAACTTGTTA
6987676 TATATTATTTTAAA-TTGACTTA
1 TATATTATTTTAAACTTG--TTA
6987698 TATATTA
1 TATATTA
6987705 CTTATTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 7 0.27
21 9 0.35
22 10 0.38
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.55
Consensus pattern (21 bp):
TATATTATTTTAAACTTGTTA
Found at i:7001719 original size:36 final size:36
Alignment explanation
Indices: 7001679--7001751 Score: 114
Period size: 36 Copynumber: 2.0 Consensus size: 36
7001669 TGTGAAGTGT
7001679 CCCTTGACATT-AGTAAAGGCCATAGATGA-AGAGAAG
1 CCCTTGAC-TTCAGTAAAGGCCATAGAT-ATAGAGAAG
7001715 CCCTTGACTTCAGTAAAGGCCATAGATATAGAGAAG
1 CCCTTGACTTCAGTAAAGGCCATAGATATAGAGAAG
7001751 C
1 C
7001752 TAAGTGAATG
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
35 3 0.09
36 32 0.91
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.21
Consensus pattern (36 bp):
CCCTTGACTTCAGTAAAGGCCATAGATATAGAGAAG
Found at i:7003147 original size:16 final size:16
Alignment explanation
Indices: 7003126--7003159 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
7003116 AACATTTAAA
7003126 TAGATAATTAAACTAG
1 TAGATAATTAAACTAG
7003142 TAGATAATTAAACTAG
1 TAGATAATTAAACTAG
7003158 TA
1 TA
7003160 AAAATGCTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.06, G:0.12, T:0.32
Consensus pattern (16 bp):
TAGATAATTAAACTAG
Found at i:7012119 original size:18 final size:18
Alignment explanation
Indices: 7012092--7012150 Score: 82
Period size: 18 Copynumber: 3.2 Consensus size: 18
7012082 GTGCCTAAAT
*
7012092 AGTAATCAGTAATGGTAGC
1 AGTAA-CAGTAACGGTAGC
7012111 AGTAACAGTAACGGTAGC
1 AGTAACAGTAACGGTAGC
* *
7012129 AGTAACAGTAACAGTAAC
1 AGTAACAGTAACGGTAGC
7012147 AGTA
1 AGTA
7012151 TTCAACACAC
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
18 32 0.86
19 5 0.14
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20
Consensus pattern (18 bp):
AGTAACAGTAACGGTAGC
Found at i:7012121 original size:6 final size:6
Alignment explanation
Indices: 7012110--7012150 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
7012100 GTAATGGTAG
* *
7012110 CAGTAA CAGTAA CGGTAG CAGTAA CAGTAA CAGTAA CAGTA
1 CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTA
7012151 TTCAACACAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.44, C:0.17, G:0.22, T:0.17
Consensus pattern (6 bp):
CAGTAA
Found at i:7012180 original size:39 final size:39
Alignment explanation
Indices: 7012136--7012276 Score: 183
Period size: 39 Copynumber: 3.6 Consensus size: 39
7012126 AGCAGTAACA
* *
7012136 GTAACAGTAACAGTATTCAACACACAAAGTGTTGAATCG
1 GTAACAGTAACAGTATTCGACACACAAAGTGTCGAATCG
* *
7012175 GTAACAGTAATAGTATTCGAGACACAAAGTGTCGAATCG
1 GTAACAGTAACAGTATTCGACACACAAAGTGTCGAATCG
* * * * *
7012214 GTAATAGGAATAGTATGCGACACACAACGTGTCGAATCG
1 GTAACAGTAACAGTATTCGACACACAAAGTGTCGAATCG
* *
7012253 GTAACAGTAACAGTAGTCGGCACA
1 GTAACAGTAACAGTATTCGACACA
7012277 TAAGTGCCTG
Statistics
Matches: 87, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 87 1.00
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (39 bp):
GTAACAGTAACAGTATTCGACACACAAAGTGTCGAATCG
Found at i:7012971 original size:3 final size:3
Alignment explanation
Indices: 7012963--7013015 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
7012953 TATTTAACAT
7012963 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7013011 TAA TA
1 TAA TA
7013016 TTTTTTACTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:7017557 original size:12 final size:13
Alignment explanation
Indices: 7017529--7017562 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
7017519 TTTGTAATTT
*
7017529 TTTAATATTTAAA
1 TTTAAAATTTAAA
7017542 TTTAAAATTT-AA
1 TTTAAAATTTAAA
7017554 TTTAAAATT
1 TTTAAAATT
7017563 CGACTCTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TTTAAAATTTAAA
Found at i:7020146 original size:3 final size:3
Alignment explanation
Indices: 7020138--7020162 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7020128 TCCTGCTGTC
7020138 CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT C
7020163 CTTTCGTCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:7025215 original size:22 final size:22
Alignment explanation
Indices: 7025187--7025264 Score: 120
Period size: 22 Copynumber: 3.5 Consensus size: 22
7025177 AATAGGGTCA
* *
7025187 CACGCCCGTGTGGACTCAAAGG
1 CACGCCCGTGTGGACACAAGGG
*
7025209 CACGCCCATGTGGACACAAGGG
1 CACGCCCGTGTGGACACAAGGG
7025231 CACGCCCGTGTGGACACAAGGG
1 CACGCCCGTGTGGACACAAGGG
*
7025253 CACGCTCGTGTG
1 CACGCCCGTGTG
7025265 TCATCAACAC
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 51 1.00
ACGTcount: A:0.22, C:0.32, G:0.33, T:0.13
Consensus pattern (22 bp):
CACGCCCGTGTGGACACAAGGG
Found at i:7027735 original size:22 final size:25
Alignment explanation
Indices: 7027686--7027736 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
7027676 TCATAGCAAG
7027686 ATATATTTCATGTATAACAATAATA
1 ATATATTTCATGTATAACAATAATA
*
7027711 ATATATTTCATGTATAAAAATAATA
1 ATATATTTCATGTATAACAATAATA
7027736 A
1 A
7027737 CATAAATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.51, C:0.06, G:0.04, T:0.39
Consensus pattern (25 bp):
ATATATTTCATGTATAACAATAATA
Found at i:7033587 original size:24 final size:24
Alignment explanation
Indices: 7033560--7033607 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
7033550 ATATTTTTTA
* *
7033560 AAATTAATTGCATTTTTTAAGAAG
1 AAATTAATGGCAGTTTTTAAGAAG
*
7033584 AAATTAATGGTAGTTTTTAAGAAG
1 AAATTAATGGCAGTTTTTAAGAAG
7033608 TAATAGTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.42, C:0.02, G:0.17, T:0.40
Consensus pattern (24 bp):
AAATTAATGGCAGTTTTTAAGAAG
Found at i:7033620 original size:20 final size:20
Alignment explanation
Indices: 7033551--7033620 Score: 52
Period size: 24 Copynumber: 3.4 Consensus size: 20
7033541 TAAATATATA
* *
7033551 TATTTTTTAA-AATTAATTG
1 TATTTTTTAAGAAGTAATAG
* *
7033570 CATTTTTTAAGAAGAAATTAATGG
1 TATTTTTTAAGAAG----TAATAG
*
7033594 TAGTTTTTAAGAAGTAATAG
1 TATTTTTTAAGAAGTAATAG
7033614 TATTTTT
1 TATTTTT
7033621 AAAGGATAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 9
0.71 0.13 0.16
Matches are distributed among these distances:
19 9 0.23
20 13 0.33
24 17 0.44
ACGTcount: A:0.37, C:0.01, G:0.13, T:0.49
Consensus pattern (20 bp):
TATTTTTTAAGAAGTAATAG
Found at i:7033709 original size:30 final size:30
Alignment explanation
Indices: 7033643--7033716 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 30
7033633 AATTTTTAGC
**
7033643 CCCTAAACTTGGCAACTAGGTCAACTTTGGT
1 CCCTAAACTTGG-AACTAAATCAACTTTGGT
* *
7033674 GCCTAAACTTGGAACTAAATCTA-TTTGGGT
1 CCCTAAACTTGGAACTAAATCAACTTT-GGT
*
7033704 CCCTAAATTTGGA
1 CCCTAAACTTGGA
7033717 TACCATTAAG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
29 3 0.08
30 22 0.61
31 11 0.31
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (30 bp):
CCCTAAACTTGGAACTAAATCAACTTTGGT
Found at i:7043084 original size:68 final size:68
Alignment explanation
Indices: 7042905--7043300 Score: 320
Period size: 68 Copynumber: 5.8 Consensus size: 68
7042895 TCTAAACTCG
* * * * * * *
7042905 TGTTTAACGTCCTGGCAAACTCTATTAGTTGT-CATAGTCGAGTTATGGTTTTACACACCTTGTA
1 TGTTTAATGTCCTGACAGACTCTATTGGTT-TCCATAGCCGAGCTATGGTCTT--ACACCTTGTA
**
7042969 ACCTTA
63 ACCCCA
* ** ** * * * ** *
7042975 T-TTGAATGTTTTGGTAGACTCTATTGGCTGCCTTAATCGAGCTATGGTCTTACACCTTATAACC
1 TGTTTAATGTCCTGACAGACTCTATTGGTTTCCATAGCCGAGCTATGGTCTTACACCTTGTAACC
7043039 CCA
66 CCA
* * *
7043042 TGTTTAATGTCTTGACGGGCTCTATTGGTTGT-CATAGCCGAGCTATGGTCTTACACCTTGTAAC
1 TGTTTAATGTCCTGACAGACTCTATTGGTT-TCCATAGCCGAGCTATGGTCTTACACCTTGTAAC
**
7043106 TTCA
65 CCCA
* * * * * *
7043110 TGTTTAATGTCATGGCAGATTCTATTGGTTGT-TATAGTCGAGCTATGGTCTTACATCTTGTAA-
1 TGTTTAATGTCCTGACAGACTCTATTGGTT-TCCATAGCCGAGCTATGGTCTTACACCTTGTAAC
7043173 CCCA
65 CCCA
* * * *
7043177 TGTTTAATGTCCTGGCAGACT-TCATTAGTTTCCATAACTGAGCTATGGTCTTACACCTTGTAAC
1 TGTTTAATGTCCTGACAGACTCT-ATTGGTTTCCATAGCCGAGCTATGGTCTTACACCTTGTAAC
*
7043241 CTCA
65 CCCA
* * * *
7043245 TGTTTAATATCCT-AGCGGACTCTATTGGTTTCCATCGTCGAGCTATGGTCTTACAC
1 TGTTTAATGTCCTGA-CAGACTCTATTGGTTTCCATAGCCGAGCTATGGTCTTACAC
7043301 ATTAAACCTC
Statistics
Matches: 261, Mismatches: 57, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
66 2 0.01
67 67 0.26
68 154 0.59
69 37 0.14
70 1 0.00
ACGTcount: A:0.22, C:0.21, G:0.19, T:0.38
Consensus pattern (68 bp):
TGTTTAATGTCCTGACAGACTCTATTGGTTTCCATAGCCGAGCTATGGTCTTACACCTTGTAACC
CCA
Found at i:7043225 original size:135 final size:136
Alignment explanation
Indices: 7042905--7043308 Score: 397
Period size: 135 Copynumber: 3.0 Consensus size: 136
7042895 TCTAAACTCG
* * * ** * *
7042905 TGTTTAACGTCCTGGCAAACTCTATTAGTTGTCATAGTCGAGTTATGGTTTTACACACCTTGTAA
1 TGTTTAATGTCCTGACAGACTCTATTAGTTGTCATAACCGAGCTATGGTCTT--ACACCTTGTAA
* * * ** * * * * * *
7042970 CCTTAT-TTGAATGTTTTGGTAGACTCTATTGGCTGCCTTAATCGAGCTATGGTCTTACACCTTA
64 CCTCATGTTTAATATCATAGCAGACTCTATTGGTTTCCATAGTCGAGCTATGGTCTTACACCTTA
7043034 TAACCCCA
129 TAACCCCA
* * * * * *
7043042 TGTTTAATGTCTTGACGGGCTCTATTGGTTGTCATAGCCGAGCTATGGTCTTACACCTTGTAACT
1 TGTTTAATGTCCTGACAGACTCTATTAGTTGTCATAACCGAGCTATGGTCTTACACCTTGTAACC
* * * * * *
7043107 TCATGTTTAATGTCATGGCAGATTCTATTGGTTGT-TATAGTCGAGCTATGGTCTTACATCTTGT
66 TCATGTTTAATATCATAGCAGACTCTATTGGTT-TCCATAGTCGAGCTATGGTCTTACACCTTAT
7043171 AA-CCCA
130 AACCCCA
* *
7043177 TGTTTAATGTCCTGGCAGACT-TCATTAGTT-TCCATAACTGAGCTATGGTCTTACACCTTGTAA
1 TGTTTAATGTCCTGACAGACTCT-ATTAGTTGT-CATAACCGAGCTATGGTCTTACACCTTGTAA
* * * *
7043240 CCTCATGTTTAATATCCTAGCGGACTCTATTGGTTTCCATCGTCGAGCTATGGTCTTACACATTA
64 CCTCATGTTTAATATCATAGCAGACTCTATTGGTTTCCATAGTCGAGCTATGGTCTTACACCTTA
7043305 -AACC
129 TAACC
7043309 TCTTTTGAGG
Statistics
Matches: 219, Mismatches: 42, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
134 5 0.02
135 124 0.57
136 48 0.22
137 42 0.19
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.38
Consensus pattern (136 bp):
TGTTTAATGTCCTGACAGACTCTATTAGTTGTCATAACCGAGCTATGGTCTTACACCTTGTAACC
TCATGTTTAATATCATAGCAGACTCTATTGGTTTCCATAGTCGAGCTATGGTCTTACACCTTATA
ACCCCA
Found at i:7044204 original size:16 final size:16
Alignment explanation
Indices: 7044183--7044235 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 16
7044173 ATCTAAAACC
7044183 AAATATTTAGAATTTA
1 AAATATTTAGAATTTA
**
7044199 AAATATTATA-AACCTA
1 AAATATT-TAGAATTTA
7044215 AAATAATTT-GAATTTA
1 AAAT-ATTTAGAATTTA
7044231 AAATA
1 AAATA
7044236 AAAACATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
15 1 0.03
16 24 0.80
17 5 0.17
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.38
Consensus pattern (16 bp):
AAATATTTAGAATTTA
Found at i:7045753 original size:11 final size:11
Alignment explanation
Indices: 7045737--7045776 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
7045727 AATTTTCTAA
*
7045737 TATTATTTTTT
1 TATTATTTTAT
*
7045748 TGTTATTTTAT
1 TATTATTTTAT
*
7045759 TATTATATTAT
1 TATTATTTTAT
7045770 TATTATT
1 TATTATT
7045777 ATTTTTGTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (11 bp):
TATTATTTTAT
Found at i:7045761 original size:3 final size:3
Alignment explanation
Indices: 7045737--7045791 Score: 53
Period size: 3 Copynumber: 19.3 Consensus size: 3
7045727 AATTTTCTAA
* * *
7045737 TAT TAT T-T TTT TGT TAT T-T TAT TAT TA- TAT TAT TAT TAT TAT TTT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
7045782 TGT TAT TAT T
1 TAT TAT TAT T
7045792 GTTTGGATAT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
2 6 0.14
3 38 0.86
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.73
Consensus pattern (3 bp):
TAT
Found at i:7048315 original size:20 final size:20
Alignment explanation
Indices: 7048272--7048317 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
7048262 AATTACTTAC
* *
7048272 TCAAATATAAAATTAAATAT
1 TCAAATATAAAATTAAACAA
**
7048292 TCAAATATAAAATTATCCAA
1 TCAAATATAAAATTAAACAA
7048312 TCAAAT
1 TCAAAT
7048318 GCAACTCAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.33
Consensus pattern (20 bp):
TCAAATATAAAATTAAACAA
Found at i:7062050 original size:21 final size:21
Alignment explanation
Indices: 7062024--7062067 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
7062014 TAATGCACTT
7062024 ACAAGTGCAATCACTTTGCTC
1 ACAAGTGCAATCACTTTGCTC
*
7062045 ACAAGTGCAATCACTTTTCTC
1 ACAAGTGCAATCACTTTGCTC
7062066 AC
1 AC
7062068 TAAGCCACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.30, G:0.11, T:0.30
Consensus pattern (21 bp):
ACAAGTGCAATCACTTTGCTC
Found at i:7063898 original size:24 final size:24
Alignment explanation
Indices: 7063854--7063907 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 24
7063844 ATGCAATGCT
*
7063854 ATATT-TATGTTTTAAATTGATTTA
1 ATATTATATGATTTAAATTGA-TTA
* *
7063878 ATATTATATGATTTATA-TGATTG
1 ATATTATATGATTTAAATTGATTA
7063901 ATATTAT
1 ATATTAT
7063908 GAGCAAGTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 9 0.35
24 8 0.31
25 9 0.35
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (24 bp):
ATATTATATGATTTAAATTGATTA
Found at i:7064053 original size:42 final size:42
Alignment explanation
Indices: 7063998--7064161 Score: 193
Period size: 42 Copynumber: 3.9 Consensus size: 42
7063988 TAGGGTTATG
*
7063998 TGTGATTTCGTGTAAGACCATATCTGGGATATAGCATCGATA
1 TGTGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
* * *
7064040 TGTGATTTTGTGTAAGACCATGTCTGGGACATGGCATCGATA
1 TGTGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
* ** * * * *
7064082 TGAGACATCGTGTAAGACCATAACTGGGCTATCGGAATCGGTA
1 TGTGATTTCGTGTAAGACCATATCTGGGATAT-GGCATCGATA
** *
7064125 TGTGATCCCATGTAAGACCATATCTGGGATATGGCAT
1 TGTGATTTCGTGTAAGACCATATCTGGGATATGGCAT
7064162 TGACATCTTA
Statistics
Matches: 99, Mismatches: 22, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
42 66 0.67
43 33 0.33
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (42 bp):
TGTGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:7064152 original size:85 final size:84
Alignment explanation
Indices: 7064005--7064161 Score: 206
Period size: 85 Copynumber: 1.9 Consensus size: 84
7063995 ATGTGTGATT
* * **** *
7064005 TCGTGTAAGACCATATCTGGGATATAGCATCGATATGTGATTTTGTGTAAGACCATGTCTGGGAC
1 TCGTGTAAGACCATAACTGGGATATAGAATCGATATGTGATCCCATGTAAGACCATATCTGGGAC
7064070 ATGGCATCGATATGAGACA
66 ATGGCATCGATATGAGACA
* * *
7064089 TCGTGTAAGACCATAACTGGGCTATCGGAATCGGTATGTGATCCCATGTAAGACCATATCTGGGA
1 TCGTGTAAGACCATAACTGGGATAT-AGAATCGATATGTGATCCCATGTAAGACCATATCTGGGA
*
7064154 TATGGCAT
65 CATGGCAT
7064162 TGACATCTTA
Statistics
Matches: 61, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
84 23 0.38
85 38 0.62
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (84 bp):
TCGTGTAAGACCATAACTGGGATATAGAATCGATATGTGATCCCATGTAAGACCATATCTGGGAC
ATGGCATCGATATGAGACA
Found at i:7066020 original size:12 final size:12
Alignment explanation
Indices: 7066003--7066033 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
7065993 TAGCTTAATT
7066003 GTGCCATGTTAA
1 GTGCCATGTTAA
7066015 GTGCCATGTTAA
1 GTGCCATGTTAA
7066027 GTGCCAT
1 GTGCCAT
7066034 TAAAAGTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (12 bp):
GTGCCATGTTAA
Found at i:7068071 original size:64 final size:68
Alignment explanation
Indices: 7067988--7068138 Score: 188
Period size: 67 Copynumber: 2.3 Consensus size: 68
7067978 ATACTATGTG
* * * *
7067988 GTAGCTAGGTCACATGTGT-GATAC-GG-GATGTATACCATGTAGACAAGAGAGCTACGGGAT-A
1 GTAGCTAGGTCACATGTGTGGATACAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATAA
7068049 AAT
66 AAT
* * *
7068052 GTAGCTAGGTCGCATGTGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATAA
1 GTAGCTAGGTCACATGTGTGGATACAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATAA
7068117 AAT
66 AAT
*
7068120 G--GCTAGGTCACATGGGTGG
1 GTAGCTAGGTCACATGTGTGG
7068139 TACTAAGTGT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
64 18 0.24
65 3 0.04
66 18 0.24
67 30 0.41
68 5 0.07
ACGTcount: A:0.30, C:0.15, G:0.32, T:0.22
Consensus pattern (68 bp):
GTAGCTAGGTCACATGTGTGGATACAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATAA
AAT
Found at i:7070188 original size:5 final size:6
Alignment explanation
Indices: 7070173--7070213 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
7070163 AATTATATGT
*
7070173 TTTTTA TTTTTA TTTTTA GTTTTAGA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
7070214 ATTAAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 22 0.71
7 8 0.26
8 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:7070930 original size:13 final size:13
Alignment explanation
Indices: 7070912--7070992 Score: 77
Period size: 13 Copynumber: 6.8 Consensus size: 13
7070902 TCTTCACTCC
7070912 AACCACCCCACTA
1 AACCACCCCACTA
*
7070925 AACCACTCCACTA
1 AACCACCCCACTA
*
7070938 AACCA-CTC-C--
1 AACCACCCCACTA
*
7070947 AATCACCCCACT-
1 AACCACCCCACTA
7070959 AA--ACCCCACTA
1 AACCACCCCACTA
7070970 AACCACCCCACTA
1 AACCACCCCACTA
*
7070983 AACCATCCCA
1 AACCACCCCA
7070993 ACTACTCCAC
Statistics
Matches: 56, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
9 4 0.07
10 10 0.18
11 4 0.07
12 3 0.05
13 35 0.62
ACGTcount: A:0.38, C:0.51, G:0.00, T:0.11
Consensus pattern (13 bp):
AACCACCCCACTA
Found at i:7070954 original size:35 final size:32
Alignment explanation
Indices: 7070906--7070975 Score: 104
Period size: 35 Copynumber: 2.1 Consensus size: 32
7070896 CAAATATCTT
7070906 CACTCCAACCACCCCACTAAACCACTCCACTAAAC
1 CACTCCAACCACCCCACTAAA-C-C-CCACTAAAC
*
7070941 CACTCCAATCACCCCACTAAACCCCACTAAAC
1 CACTCCAACCACCCCACTAAACCCCACTAAAC
7070973 CAC
1 CAC
7070976 CCCACTAAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 12 0.35
33 1 0.03
34 1 0.03
35 20 0.59
ACGTcount: A:0.37, C:0.51, G:0.00, T:0.11
Consensus pattern (32 bp):
CACTCCAACCACCCCACTAAACCCCACTAAAC
Found at i:7070980 original size:23 final size:23
Alignment explanation
Indices: 7070916--7070986 Score: 92
Period size: 23 Copynumber: 3.1 Consensus size: 23
7070906 CACTCCAACC
*
7070916 ACCCCACTAAACCACTCCACTAA
1 ACCCCACTAAACCACCCCACTAA
* *
7070939 A--CCACTCCAATCACCCCACTAA
1 ACCCCACT-AAACCACCCCACTAA
7070961 ACCCCACTAAACCACCCCACTAA
1 ACCCCACTAAACCACCCCACTAA
7070984 ACC
1 ACC
7070987 ATCCCAACTA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
21 5 0.12
22 13 0.32
23 17 0.43
24 5 0.12
ACGTcount: A:0.38, C:0.51, G:0.00, T:0.11
Consensus pattern (23 bp):
ACCCCACTAAACCACCCCACTAA
Found at i:7071509 original size:23 final size:23
Alignment explanation
Indices: 7071425--7071509 Score: 55
Period size: 23 Copynumber: 3.6 Consensus size: 23
7071415 CTAATACCAC
* *
7071425 TATTATCATCATTATTACTATTA-
1 TATTATTAT-ATTTTTACTATTAT
* * *
7071448 TATTATAATACCTTTTCATTATTAT
1 TATTATTATA--TTTTTACTATTAT
* * * *
7071473 AACTATTGTGTTTTTACTATTAT
1 TATTATTATATTTTTACTATTAT
7071496 TATTATTATATTTT
1 TATTATTATATTTT
7071510 CCTTTTTTTG
Statistics
Matches: 44, Mismatches: 15, Indels: 6
0.68 0.23 0.09
Matches are distributed among these distances:
22 1 0.02
23 29 0.66
24 9 0.20
25 5 0.11
ACGTcount: A:0.31, C:0.09, G:0.02, T:0.58
Consensus pattern (23 bp):
TATTATTATATTTTTACTATTAT
Found at i:7075907 original size:20 final size:20
Alignment explanation
Indices: 7075869--7075907 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7075859 CCGCATATGT
*
7075869 AATCTATTTTTATGTAAAGA
1 AATCTATTTTTATGAAAAGA
7075889 AATCTATTTTCTA-GAAAAG
1 AATCTATTTT-TATGAAAAG
7075908 TTATTCTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (20 bp):
AATCTATTTTTATGAAAAGA
Found at i:7082409 original size:206 final size:206
Alignment explanation
Indices: 7082045--7083081 Score: 1799
Period size: 206 Copynumber: 5.0 Consensus size: 206
7082035 GATCTGACTA
* *
7082045 AAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGTTGAT
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
*
7082109 TTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTTTGTATTGTCAGAGA
66 TTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
7082174 ACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGA
131 ACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGA
7082239 TGTTTATACTG
196 TGTTTATACTG
* *
7082250 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAAGAGCAAATCGAAGACATAGATGAT
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
* *
7082315 TTGGCTTTTGCGTGCTTACGGTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
66 TTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
* *
7082380 ACAAGTCGAAGTCTGGCATCTCTATTTCGACGGAGAGCAGATACATAGCAGATCTGCCCTTCAGA
131 ACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGA
7082445 TGTTTATACTG
196 TGTTTATACTG
*
7082456 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACGAGGAGCAAATCGAAGACATAGCTGAT
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
* * *
7082521 TTGGCTTTCGCGTGCTTACGCTAAAGTAAGTTTAAGATGATTTGGCATCTCTGTATTATCAGAGA
66 TTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
* * * *
7082586 ACAAGTCGAAGTTTGGCATCTCCATTTTGACCGAGAGCAGATACATAACAGATCTGGCCTTCAGA
131 ACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGA
7082651 TGTTTATACTG
196 TGTTTATACTG
*
7082662 AAG-AAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAATACATAGCTGAT
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
7082726 TTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
66 TTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
* * *
7082791 ACAAGTCAAAGTCTGGCATCTCTATTTCGACGGAAAGCAGATACATAGCAGATCTGGCCTTCAGA
131 ACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGA
*
7082856 TGTTTATACTA
196 TGTTTATACTG
* ** *
7082867 AAGTAAGATCCAAGATGATTTGGCATCCTCCTGCTTACAAGGAGCAAATCGAAGATATAGCTGAT
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
7082932 TTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
66 TTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
* *
7082997 ACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAACATATACATAGCAGATCTGGCCTTCAGA
131 ACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGA
*
7083062 TGTTTATACCG
196 TGTTTATACTG
7083073 AAGCAAGAT
1 AAGCAAGAT
7083082 TTTCGACGGA
Statistics
Matches: 783, Mismatches: 47, Indels: 3
0.94 0.06 0.00
Matches are distributed among these distances:
205 196 0.25
206 587 0.75
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (206 bp):
AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
TTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
ACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGA
TGTTTATACTG
Found at i:7082858 original size:411 final size:412
Alignment explanation
Indices: 7082041--7083081 Score: 1825
Period size: 411 Copynumber: 2.5 Consensus size: 412
7082031 AGCAGATCTG
* *
7082041 ACTAAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGT
1 ACTAAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGC
*
7082105 TGATTTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTTTGTATTGTCA
66 TGATTTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCA
7082170 GAGAACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTT
131 GAGAACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTT
7082235 CAGATGTTTATACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAAGAGCAAATC
196 CAGATGTTTATACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAAGAGCAAATC
* *
7082300 GAAGACATAGATGATTTGGCTTTTGCGTGCTTACGGTAAAGCAAGTCTAAGATGATTTGGCATCT
261 GAAGACATAGATGATTTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCT
* *
7082365 CTGTATTGTCAGAGAACAAGTCGAAGTCTGGCATCTCTATTTCGACGGAGAGCAGATACATAGCA
326 CTGTATTGTCAGAGAACAAGTCAAAGTCTGGCATCTCTATTTCGACGGAAAGCAGATACATAGCA
7082430 GATCTGCCCTTCAGATGTTTAT
391 GATCTGCCCTTCAGATGTTTAT
* *
7082452 ACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACGAGGAGCAAATCGAAGACATAGC
1 ACTAAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGC
* * *
7082517 TGATTTGGCTTTCGCGTGCTTACGCTAAAGTAAGTTTAAGATGATTTGGCATCTCTGTATTATCA
66 TGATTTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCA
* * * *
7082582 GAGAACAAGTCGAAGTTTGGCATCTCCATTTTGACCGAGAGCAGATACATAACAGATCTGGCCTT
131 GAGAACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTT
*
7082647 CAGATGTTTATACTGAAG-AAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATC
196 CAGATGTTTATACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAAGAGCAAATC
* *
7082711 GAATACATAGCTGATTTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCT
261 GAAGACATAGATGATTTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCT
7082776 CTGTATTGTCAGAGAACAAGTCAAAGTCTGGCATCTCTATTTCGACGGAAAGCAGATACATAGCA
326 CTGTATTGTCAGAGAACAAGTCAAAGTCTGGCATCTCTATTTCGACGGAAAGCAGATACATAGCA
*
7082841 GATCTGGCCTTCAGATGTTTAT
391 GATCTGCCCTTCAGATGTTTAT
* ** *
7082863 ACTAAAGTAAGATCCAAGATGATTTGGCATCCTCCTGCTTACAAGGAGCAAATCGAAGATATAGC
1 ACTAAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGC
7082928 TGATTTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCA
66 TGATTTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCA
* *
7082993 GAGAACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAACATATACATAGCAGATCTGGCCTT
131 GAGAACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTT
*
7083058 CAGATGTTTATACCGAAGCAAGAT
196 CAGATGTTTATACTGAAGCAAGAT
7083082 TTTCGACGGA
Statistics
Matches: 592, Mismatches: 36, Indels: 3
0.94 0.06 0.00
Matches are distributed among these distances:
411 394 0.67
412 198 0.33
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (412 bp):
ACTAAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGC
TGATTTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCA
GAGAACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTT
CAGATGTTTATACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAAGAGCAAATC
GAAGACATAGATGATTTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCT
CTGTATTGTCAGAGAACAAGTCAAAGTCTGGCATCTCTATTTCGACGGAAAGCAGATACATAGCA
GATCTGCCCTTCAGATGTTTAT
Found at i:7083116 original size:61 final size:61
Alignment explanation
Indices: 7083021--7083142 Score: 226
Period size: 61 Copynumber: 2.0 Consensus size: 61
7083011 GGCATCTCCA
*
7083021 TTTCGACGGAGAACATATACATAGCAGATCTGGCCTTCAGATGTTTATACCGAAGCAAGAT
1 TTTCGACGGAGAACAGATACATAGCAGATCTGGCCTTCAGATGTTTATACCGAAGCAAGAT
*
7083082 TTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGATGTTTATACCGAAGCAAGAT
1 TTTCGACGGAGAACAGATACATAGCAGATCTGGCCTTCAGATGTTTATACCGAAGCAAGAT
7083143 CCAAGATGAT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (61 bp):
TTTCGACGGAGAACAGATACATAGCAGATCTGGCCTTCAGATGTTTATACCGAAGCAAGAT
Found at i:7083333 original size:45 final size:45
Alignment explanation
Indices: 7083281--7083372 Score: 148
Period size: 45 Copynumber: 2.0 Consensus size: 45
7083271 GACGAAGCAA
* *
7083281 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATGACAG
1 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAACAG
* *
7083326 ATTTGGCGTTTTTGTATTAGACGGGGAGCAGATCAAAGATAACAG
1 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAACAG
7083371 AT
1 AT
7083373 ATCGCTTTCC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.29, C:0.13, G:0.30, T:0.27
Consensus pattern (45 bp):
ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAACAG
Found at i:7083585 original size:15 final size:16
Alignment explanation
Indices: 7083559--7083588 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7083549 TTTGCCCGGG
7083559 CTAAAAAGCCCAACAT
1 CTAAAAAGCCCAACAT
7083575 CTAAAAA-CCCAACA
1 CTAAAAAGCCCAACA
7083589 GCCCAAAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.53, C:0.33, G:0.03, T:0.10
Consensus pattern (16 bp):
CTAAAAAGCCCAACAT
Found at i:7083695 original size:13 final size:13
Alignment explanation
Indices: 7083677--7083723 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
7083667 TCTTCACTCC
7083677 AACCACTCCACTA
1 AACCACTCCACTA
*
7083690 AACCACCCCACTA
1 AACCACTCCACTA
7083703 AACCAC-CC-C--
1 AACCACTCCACTA
7083712 AACCACTCCACT
1 AACCACTCCACT
7083724 TGCCTACAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
9 6 0.20
10 2 0.07
11 2 0.07
12 2 0.07
13 18 0.60
ACGTcount: A:0.36, C:0.53, G:0.00, T:0.11
Consensus pattern (13 bp):
AACCACTCCACTA
Found at i:7084225 original size:23 final size:23
Alignment explanation
Indices: 7084141--7084225 Score: 55
Period size: 23 Copynumber: 3.6 Consensus size: 23
7084131 CTAATACCAC
* *
7084141 TATTATCATCATTATTACTATTA-
1 TATTATTAT-ATTTTTACTATTAT
* * *
7084164 TATTATAATACCTTTTCATTATTAT
1 TATTATTATA--TTTTTACTATTAT
* * * *
7084189 AACTATTGTGTTTTTACTATTAT
1 TATTATTATATTTTTACTATTAT
7084212 TATTATTATATTTT
1 TATTATTATATTTT
7084226 CCTTTTTTTG
Statistics
Matches: 44, Mismatches: 15, Indels: 6
0.68 0.23 0.09
Matches are distributed among these distances:
22 1 0.02
23 29 0.66
24 9 0.20
25 5 0.11
ACGTcount: A:0.31, C:0.09, G:0.02, T:0.58
Consensus pattern (23 bp):
TATTATTATATTTTTACTATTAT
Found at i:7087772 original size:38 final size:38
Alignment explanation
Indices: 7087725--7087805 Score: 153
Period size: 38 Copynumber: 2.1 Consensus size: 38
7087715 ATATGCATAA
*
7087725 AATACCTTAGTCTTCTTGAGGTTCTTCATAAGCAACCC
1 AATAGCTTAGTCTTCTTGAGGTTCTTCATAAGCAACCC
7087763 AATAGCTTAGTCTTCTTGAGGTTCTTCATAAGCAACCC
1 AATAGCTTAGTCTTCTTGAGGTTCTTCATAAGCAACCC
7087801 AATAG
1 AATAG
7087806 TCTCTTCATT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.33
Consensus pattern (38 bp):
AATAGCTTAGTCTTCTTGAGGTTCTTCATAAGCAACCC
Found at i:7088909 original size:6 final size:6
Alignment explanation
Indices: 7088900--7088976 Score: 109
Period size: 6 Copynumber: 12.8 Consensus size: 6
7088890 TATATATACA
*
7088900 GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG GAGAGA
1 GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG
* * * *
7088948 GAGAGA GAGAGA GAGAGA GAGAGA GAGAG
1 GAGAGG GAGAGG GAGAGG GAGAGG GAGAG
7088977 AGATTTGATA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
6 70 1.00
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (6 bp):
GAGAGG
Found at i:7089483 original size:63 final size:63
Alignment explanation
Indices: 7089217--7089470 Score: 399
Period size: 63 Copynumber: 4.1 Consensus size: 63
7089207 AGGAGATGAT
*
7089217 GATGATGATGATGATGAGCCGACGTTTGGAGGTGGAGGCGT-TCGTAACCAAGAAGGAACTT--
1 GATGATGATGATGATGATCCGACGTTTGGAGGTGGAGGCGTCT-GTAACCAAGAAGGAACTTGA
*
7089278 GA-GATGATGATGATGATCCGACGTTTGGAGGTGGAGGCGTCTGTAACCAAGTAGGAACTTGA
1 GATGATGATGATGATGATCCGACGTTTGGAGGTGGAGGCGTCTGTAACCAAGAAGGAACTTGA
* *
7089340 GATGATGATGATGATGATCCGACGTTTGGAGGTGGACGCGTCTGTAACCAAGAAGGAACTTTA
1 GATGATGATGATGATGATCCGACGTTTGGAGGTGGAGGCGTCTGTAACCAAGAAGGAACTTGA
* * * *
7089403 GATGATGATGATGATGATCCGACGTTTGGAGGTGGAGGCATTTGTAACGAAGAAGAAACTTGA
1 GATGATGATGATGATGATCCGACGTTTGGAGGTGGAGGCGTCTGTAACCAAGAAGGAACTTGA
7089466 GATGA
1 GATGA
7089471 CGACGACGAT
Statistics
Matches: 178, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
60 54 0.30
61 3 0.02
62 2 0.01
63 119 0.67
ACGTcount: A:0.29, C:0.12, G:0.34, T:0.24
Consensus pattern (63 bp):
GATGATGATGATGATGATCCGACGTTTGGAGGTGGAGGCGTCTGTAACCAAGAAGGAACTTGA
Found at i:7089489 original size:18 final size:18
Alignment explanation
Indices: 7089466--7089508 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
7089456 AGAAACTTGA
* *
7089466 GATGACGACGACGATGAT
1 GATGACGACGAAGATGAC
7089484 GATGACGACGAAGATGAC
1 GATGACGACGAAGATGAC
7089502 GATGACG
1 GATGACG
7089509 CGATGTTTCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.35, C:0.16, G:0.35, T:0.14
Consensus pattern (18 bp):
GATGACGACGAAGATGAC
Found at i:7089490 original size:15 final size:15
Alignment explanation
Indices: 7089465--7089508 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
7089455 AAGAAACTTG
7089465 AGATGACGACGACGA
1 AGATGACGACGACGA
* *
7089480 TGATGATGACGACGA
1 AGATGACGACGACGA
*
7089495 AGATGACGATGACG
1 AGATGACGACGACG
7089509 CGATGTTTCG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.36, C:0.16, G:0.34, T:0.14
Consensus pattern (15 bp):
AGATGACGACGACGA
Found at i:7092451 original size:11 final size:11
Alignment explanation
Indices: 7092437--7092481 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
7092427 AGATAAATAT
7092437 TATTTTATTAA
1 TATTTTATTAA
*
7092448 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
7092461 TATTTTATTAT
1 TATTTTATTAA
7092472 TATTTTATTA
1 TATTTTATTA
7092482 GTATATAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:7094197 original size:33 final size:33
Alignment explanation
Indices: 7094064--7094205 Score: 103
Period size: 33 Copynumber: 4.3 Consensus size: 33
7094054 AATTGGCGGA
* * *
7094064 TAAGACTATGGCTGGGCCATGGA-AATATATGTG
1 TAAGACCATAGCTGGGCCAT-GACAATACATGTG
* * *
7094097 TAAGACCATAGCTAGGCTATGAC-AT-CCTGATG
1 TAAGACCATAGCTGGGCCATGACAATACATG-TG
** ** *
7094129 ATAAGACCATATTTGGGATATGACACTACGA-GTG
1 -TAAGACCATAGCTGGGCCATGACAATAC-ATGTG
* *
7094163 TAAGACCATGGCTGGGCCATGGCAATACATGTG
1 TAAGACCATAGCTGGGCCATGACAATACATGTG
7094196 TAAGACCATA
1 TAAGACCATA
7094206 TTTGGACTAT
Statistics
Matches: 82, Mismatches: 20, Indels: 14
0.71 0.17 0.12
Matches are distributed among these distances:
31 2 0.02
32 7 0.09
33 68 0.83
34 3 0.04
35 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (33 bp):
TAAGACCATAGCTGGGCCATGACAATACATGTG
Found at i:7094218 original size:33 final size:33
Alignment explanation
Indices: 7094130--7094219 Score: 85
Period size: 33 Copynumber: 2.7 Consensus size: 33
7094120 ATCCTGATGA
* *
7094130 TAAGACCATATTTGGGA-TATGACACTACGAGTG
1 TAAGACCATATTT-GGACTATGGCAATACGAGTG
*** * *
7094163 TAAGACCATGGCTGGGCCATGGCAATAC-ATGTG
1 TAAGACCATATTTGGACTATGGCAATACGA-GTG
7094196 TAAGACCATATTTGGACTATGGCA
1 TAAGACCATATTTGGACTATGGCA
7094220 TCATCCCAGA
Statistics
Matches: 43, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
32 3 0.07
33 40 0.93
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.26
Consensus pattern (33 bp):
TAAGACCATATTTGGACTATGGCAATACGAGTG
Found at i:7094282 original size:45 final size:45
Alignment explanation
Indices: 7094233--7094354 Score: 124
Period size: 45 Copynumber: 2.7 Consensus size: 45
7094223 TCCCAGAAAC
*
7094233 GAGTAAGACCATATCTAAAAGATGCTATGGCATCGA-AATTCAGAT
1 GAGTAAGACCATATCTGAAAGATGCTATGGCATC-ACAATTCAGAT
* * * * * *
7094278 GAGTAAGGCCATAGCTGAAAGACGATATGGCATCACGATTTAGAT
1 GAGTAAGACCATATCTGAAAGATGCTATGGCATCACAATTCAGAT
*
7094323 -ATGTAAGACCATAGT-TGAAAGATACTATGGCA
1 GA-GTAAGACCATA-TCTGAAAGATGCTATGGCA
7094355 ATATGACGAG
Statistics
Matches: 62, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
44 2 0.03
45 60 0.97
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.24
Consensus pattern (45 bp):
GAGTAAGACCATATCTGAAAGATGCTATGGCATCACAATTCAGAT
Found at i:7094389 original size:46 final size:45
Alignment explanation
Indices: 7094326--7094484 Score: 221
Period size: 46 Copynumber: 3.5 Consensus size: 45
7094316 TTTAGATATG
* * *
7094326 TAAGACCATAGTTGAAAGATACTATGGCAATATGACGAGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGAC-AGAAATGAA
* *
7094372 TAAAACCATGGTTGAAAGATACCATGGCAACATGACAAAAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGAC-AGAAATGAA
*
7094418 TAAGACCATGGTAT-AAAGATACCATGGCAACATGACAGGAAATAAA
1 TAAGACCATGGT-TGAAAGATACCATGGCAACATGACA-GAAATGAA
7094464 TAAGACCATGGTTGAAAGATA
1 TAAGACCATGGTTGAAAGATA
7094485 GAAATGAATA
Statistics
Matches: 101, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
45 2 0.02
46 98 0.97
47 1 0.01
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.19
Consensus pattern (45 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAATGAA
Found at i:7094488 original size:29 final size:29
Alignment explanation
Indices: 7094456--7094511 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
7094446 AACATGACAG
*
7094456 GAAATAAATAAGACCATGGTTGAAAGATA
1 GAAATAAATAAGACCATAGTTGAAAGATA
* *
7094485 GAAATGAATAAGACCATAGTTGGAAGA
1 GAAATAAATAAGACCATAGTTGAAAGA
7094512 CACTATGGCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.50, C:0.07, G:0.23, T:0.20
Consensus pattern (29 bp):
GAAATAAATAAGACCATAGTTGAAAGATA
Found at i:7096531 original size:25 final size:25
Alignment explanation
Indices: 7096503--7096601 Score: 93
Period size: 25 Copynumber: 4.2 Consensus size: 25
7096493 TTTGTGGAAA
*
7096503 GCCACCACTGAATTATATATATACT
1 GCCACCACTGAATTATAGATATACT
* *
7096528 GCCACCACTG-A-TGTGGA-A-A--
1 GCCACCACTGAATTATAGATATACT
*
7096547 GCCACCACTGAATTATATATATACT
1 GCCACCACTGAATTATAGATATACT
* **
7096572 GCCACCACTGATTTGCAGATATACT
1 GCCACCACTGAATTATAGATATACT
7096597 GCCAC
1 GCCAC
7096602 TGCTTCCACC
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
19 10 0.17
20 1 0.02
21 4 0.07
22 2 0.03
23 4 0.07
24 1 0.02
25 36 0.62
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.26
Consensus pattern (25 bp):
GCCACCACTGAATTATAGATATACT
Found at i:7096545 original size:44 final size:44
Alignment explanation
Indices: 7096495--7096583 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
7096485 ATAACACTTT
7096495 TGTGGAAAGCCACCACTGAATTATATATATACTGCCACCACTGA
1 TGTGGAAAGCCACCACTGAATTATATATATACTGCCACCACTGA
7096539 TGTGGAAAGCCACCACTGAATTATATATATACTGCCACCACTGA
1 TGTGGAAAGCCACCACTGAATTATATATATACTGCCACCACTGA
7096583 T
1 T
7096584 TTGCAGATAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.26
Consensus pattern (44 bp):
TGTGGAAAGCCACCACTGAATTATATATATACTGCCACCACTGA
Found at i:7100054 original size:46 final size:44
Alignment explanation
Indices: 7099960--7100174 Score: 150
Period size: 46 Copynumber: 4.7 Consensus size: 44
7099950 GATCAGGTGT
7099960 CGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGACACATCTCGTAGC
* * **
7100006 CGATGCACGTCCCAGACATGTCTTACACTGGCTTAGGTCTCG-AGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGAC--ACATCTCGTA-GC
* * *
7100052 CGATGTATATCCCAGACATGTCTTACACTAACAC-TCGTC-TCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGACACATC-TCGT--A-GC
* * * * * *
7100098 CGATGCCATGTCCCAAACATGGTATTACACTAGCTCTCATAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACT-G-ACACAT-CTCGTAGC
*
7100146 CGATGCATGTCCCAAACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
7100175 AGTTCACACA
Statistics
Matches: 134, Mismatches: 21, Indels: 28
0.73 0.11 0.15
Matches are distributed among these distances:
43 2 0.01
44 15 0.11
45 14 0.10
46 57 0.43
47 25 0.19
48 16 0.12
50 2 0.01
51 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (44 bp):
CGATGCATGTCCCAGACATGTCTTACACTGACACATCTCGTAGC
Found at i:7102152 original size:3 final size:3
Alignment explanation
Indices: 7102144--7102168 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7102134 ATATTACTAG
7102144 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
7102169 AATAAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:7102475 original size:42 final size:42
Alignment explanation
Indices: 7102428--7102511 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
7102418 AGAAAAAGAA
*
7102428 AAGAGAAAAGAAAAAGGAAGAATTAGAGTTTTAAGTTTCAAG
1 AAGAGAAAAGAAAAAGGAAGAATTAGAGTTTTAAGGTTCAAG
7102470 AAGAGAAAAGAAAAAGGAAGAATTAGAGTTTTAAGGTTCAAG
1 AAGAGAAAAGAAAAAGGAAGAATTAGAGTTTTAAGGTTCAAG
7102512 CTTAATTTGA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.52, C:0.02, G:0.25, T:0.20
Consensus pattern (42 bp):
AAGAGAAAAGAAAAAGGAAGAATTAGAGTTTTAAGGTTCAAG
Found at i:7102749 original size:80 final size:80
Alignment explanation
Indices: 7102616--7102775 Score: 311
Period size: 80 Copynumber: 2.0 Consensus size: 80
7102606 GTAAGTTTGT
7102616 ATAACTTGAATGAGTATGTAAATATGTTAATTAAAATGTTGTATTGTATTGTATATAATATATGA
1 ATAACTTGAATGAGTATGTAAATATGTTAATTAAAATGTTGTATTGTATTGTATATAATATATGA
7102681 AATTGAATATATGAA
66 AATTGAATATATGAA
*
7102696 ATAACTTGAATGAGTATGTAAATATGTTAATTTAAATGTTGTATTGTATTGTATATAATATATGA
1 ATAACTTGAATGAGTATGTAAATATGTTAATTAAAATGTTGTATTGTATTGTATATAATATATGA
7102761 AATTGAATATATGAA
66 AATTGAATATATGAA
7102776 TTATATAGAT
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 79 1.00
ACGTcount: A:0.42, C:0.01, G:0.15, T:0.42
Consensus pattern (80 bp):
ATAACTTGAATGAGTATGTAAATATGTTAATTAAAATGTTGTATTGTATTGTATATAATATATGA
AATTGAATATATGAA
Found at i:7106156 original size:16 final size:17
Alignment explanation
Indices: 7106125--7106157 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7106115 TTCATAAGTA
7106125 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
7106142 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
7106158 GCACCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:7106538 original size:46 final size:46
Alignment explanation
Indices: 7106438--7106618 Score: 240
Period size: 46 Copynumber: 4.0 Consensus size: 46
7106428 TTATCTTTGA
* * * * *
7106438 CATGATGCCATAGTGTCTTTCAACTAT-GTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
*
7106483 CATGTTGCCATGGTATCTTTCAACCATGGTATTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * **
7106529 CACGCTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
*
7106575 CATGTTGCCATGGTATCTTTCAATCATGGTCTTATTCATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT
7106619 ATCAGTGGTC
Statistics
Matches: 118, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
45 27 0.23
46 91 0.77
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
Found at i:7106603 original size:92 final size:91
Alignment explanation
Indices: 7106443--7106618 Score: 271
Period size: 92 Copynumber: 1.9 Consensus size: 91
7106433 TTTGACATGA
* * * *
7106443 TGCCATAGTGTCTTTCAACTATGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACC
1 TGCCATAGTATCTTTCAACCATGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACC
7106508 ATGGTATTATTCATTTCATGTCACGC
66 ATGGTATTATTCATTTCATGTCACGC
* * *
7106534 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAT
1 TGCCATAGTATCTTTCAACCAT-GTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
*
7106599 CATGGTCTTATTCATTTCAT
65 CATGGTATTATTCATTTCAT
7106619 ATCAGTGGTC
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
91 19 0.25
92 57 0.75
ACGTcount: A:0.19, C:0.23, G:0.14, T:0.43
Consensus pattern (91 bp):
TGCCATAGTATCTTTCAACCATGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACC
ATGGTATTATTCATTTCATGTCACGC
Found at i:7106628 original size:23 final size:22
Alignment explanation
Indices: 7106592--7106643 Score: 70
Period size: 23 Copynumber: 2.4 Consensus size: 22
7106582 CCATGGTATC
**
7106592 TTTCA-ATCATGGTCTTATTCA
1 TTTCATATCATGGTCTTACACA
7106613 TTTCATATCAGTGGTCTTACACA
1 TTTCATATCA-TGGTCTTACACA
7106636 TTTCATAT
1 TTTCATAT
7106644 TAGGTTGCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 5 0.19
22 4 0.15
23 18 0.67
ACGTcount: A:0.25, C:0.19, G:0.10, T:0.46
Consensus pattern (22 bp):
TTTCATATCATGGTCTTACACA
Found at i:7106674 original size:46 final size:46
Alignment explanation
Indices: 7106624--7106736 Score: 201
Period size: 46 Copynumber: 2.5 Consensus size: 46
7106614 TTCATATCAG
7106624 TGGTCTTACACATTTCATAT-TAGGTTGCCATGGTATCTTTCAACCA
1 TGGTCTTACACATTTCATATCT-GGTTGCCATGGTATCTTTCAACCA
*
7106670 TGGTCTTACACATTTTATATCTGGTTGCCATGGTATCTTTCAACCA
1 TGGTCTTACACATTTCATATCTGGTTGCCATGGTATCTTTCAACCA
7106716 TGGTCTTACACATTTCATATC
1 TGGTCTTACACATTTCATATC
7106737 AGAGAGCACA
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
46 63 0.98
47 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.14, T:0.41
Consensus pattern (46 bp):
TGGTCTTACACATTTCATATCTGGTTGCCATGGTATCTTTCAACCA
Found at i:7107070 original size:26 final size:26
Alignment explanation
Indices: 7107018--7107071 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
7107008 TCCCCTTTTT
*
7107018 ATTCAAATTATTTTCATACAATGAAC
1 ATTCAAATTATTTTCACACAATGAAC
7107044 ATTCAAATTATTTTCACATCAAT-AAC
1 ATTCAAATTATTTTCACA-CAATGAAC
7107070 AT
1 AT
7107072 ACATTTCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.43, C:0.17, G:0.02, T:0.39
Consensus pattern (26 bp):
ATTCAAATTATTTTCACACAATGAAC
Found at i:7111621 original size:16 final size:17
Alignment explanation
Indices: 7111590--7111622 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7111580 TTCATAAGTA
7111590 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
7111607 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
7111623 GCACCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:7111994 original size:46 final size:46
Alignment explanation
Indices: 7111902--7112036 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
7111892 TTATCTTTGA
* * * *
7111902 CATGATGCCATAGTGTCTTTCAACTAT-GTCTTACTCATTTTC-TGT
1 CATGATGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
*
7111947 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGATGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* *
7111993 CACGCTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT
1 CATGATGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT
7112037 ATTAGTGGTC
Statistics
Matches: 81, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
45 27 0.33
46 54 0.67
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (46 bp):
CATGATGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
Found at i:7112112 original size:46 final size:46
Alignment explanation
Indices: 7112042--7112155 Score: 212
Period size: 46 Copynumber: 2.5 Consensus size: 46
7112032 TTCATATTAG
*
7112042 TGGTCTTACAC-TTTCATATTAGGTTGCCATGGTATCTTTCAACCA
1 TGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCA
7112087 TGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCA
1 TGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCA
7112133 TGGTCTTACACATTTCATATCAG
1 TGGTCTTACACATTTCATATCAG
7112156 AGAGCACACT
Statistics
Matches: 67, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
45 11 0.16
46 56 0.84
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.39
Consensus pattern (46 bp):
TGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCA
Found at i:7112549 original size:26 final size:26
Alignment explanation
Indices: 7112497--7112550 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
7112487 TCCCTTTTTT
*
7112497 ATTCAAATTATTTTCATACAATGAAC
1 ATTCAAATTATTTTCACACAATGAAC
7112523 ATTCAAATTATTTTCACATCAAT-AAC
1 ATTCAAATTATTTTCACA-CAATGAAC
7112549 AT
1 AT
7112551 ACATTTCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.43, C:0.17, G:0.02, T:0.39
Consensus pattern (26 bp):
ATTCAAATTATTTTCACACAATGAAC
Found at i:7119038 original size:43 final size:42
Alignment explanation
Indices: 7118977--7119061 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 42
7118967 CTATTTTGTT
* * *
7118977 GCGGTTGATTAGTGAGAGATA-TCGGTTTCTTCTTATAATATTA
1 GCGGTTCATCAGTGAGAGATACT-GGTTT-TACTTATAATATTA
*
7119020 GCGGTTCATCAGTGAGAGATACTGGTTTTACTTATCATATTA
1 GCGGTTCATCAGTGAGAGATACTGGTTTTACTTATAATATTA
7119062 ACATATCTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
42 12 0.32
43 24 0.65
44 1 0.03
ACGTcount: A:0.26, C:0.12, G:0.22, T:0.40
Consensus pattern (42 bp):
GCGGTTCATCAGTGAGAGATACTGGTTTTACTTATAATATTA
Found at i:7119738 original size:15 final size:16
Alignment explanation
Indices: 7119700--7119739 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
7119690 TTAATTTAGG
7119700 ATTATTTAATTATTCA
1 ATTATTTAATTATTCA
*
7119716 ACTA-TTAATTATT-A
1 ATTATTTAATTATTCA
7119730 ATTATTTAAT
1 ATTATTTAAT
7119740 GACATAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
14 4 0.19
15 14 0.67
16 3 0.14
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTATTTAATTATTCA
Found at i:7123881 original size:60 final size:60
Alignment explanation
Indices: 7123817--7123935 Score: 143
Period size: 60 Copynumber: 2.0 Consensus size: 60
7123807 TGGCTCTAAC
* * * *
7123817 TCTGGATCCGACTTCGGTTCTGT-CC-GTAACTCTGGCTCTGTCTCCGGTTTTGGTTCCGGT
1 TCTGGATCCGACTTCGGTT-T-TCCCTCTAACTCTGGCTCTGCCTCCGGTTCTGGATCCGGT
* * *
7123877 TCTGGATCTGGCTTCGGTTTTCCCTCTAACTTTGGCTCTGCCTCCGGTTCTGGATCCGG
1 TCTGGATCCGACTTCGGTTTTCCCTCTAACTCTGGCTCTGCCTCCGGTTCTGGATCCGG
7123936 CTCCGGTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
58 1 0.02
59 3 0.06
60 46 0.92
ACGTcount: A:0.07, C:0.29, G:0.26, T:0.38
Consensus pattern (60 bp):
TCTGGATCCGACTTCGGTTTTCCCTCTAACTCTGGCTCTGCCTCCGGTTCTGGATCCGGT
Found at i:7129477 original size:43 final size:43
Alignment explanation
Indices: 7129430--7129582 Score: 279
Period size: 43 Copynumber: 3.6 Consensus size: 43
7129420 GGCATTACGT
*
7129430 CTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
7129473 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
* *
7129516 CTACTAGGCACGAAGGCTCGAATACACATCACCGGCACGAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
7129559 CTGCTAGGCACGAAGGCCCGAATA
1 CTGCTAGGCACGAAGGCCCGAATA
7129583 TAATACCAGC
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 105 1.00
ACGTcount: A:0.31, C:0.33, G:0.25, T:0.10
Consensus pattern (43 bp):
CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
Found at i:7129623 original size:38 final size:38
Alignment explanation
Indices: 7129575--7129698 Score: 167
Period size: 38 Copynumber: 3.2 Consensus size: 38
7129565 GGCACGAAGG
* * * *
7129575 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
7129613 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
** *
7129651 CCCGGATATTTTACCAGCACGAAGCCTGCGGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG-ATTTAA
7129690 GCCCGGATA
1 -CCCGGATA
7129699 CACATCAAAT
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
38 64 0.83
39 5 0.06
40 8 0.10
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.22
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:7135207 original size:10 final size:11
Alignment explanation
Indices: 7135172--7135216 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
7135162 TAGGAAGATA
*
7135172 TTATTTTACTT
1 TTATTTTATTT
*
7135183 TTATTTTTGTTT
1 TTA-TTTTATTT
7135195 TTA-TTTATTT
1 TTATTTTATTT
7135205 TTATTTTATTT
1 TTATTTTATTT
7135216 T
1 T
7135217 ATTAAAATAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
10 9 0.31
11 11 0.38
12 9 0.31
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (11 bp):
TTATTTTATTT
Found at i:7135217 original size:16 final size:16
Alignment explanation
Indices: 7135172--7135219 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
7135162 TAGGAAGATA
7135172 TTATTTTACTTTTATTT
1 TTATTTTA-TTTTATTT
*
7135189 TTGTTTT-TATTTATTT
1 TTATTTTAT-TTTATTT
7135205 TTATTTTATTTTATT
1 TTATTTTATTTTATT
7135220 AAAATAGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 1 0.04
16 19 0.70
17 7 0.26
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (16 bp):
TTATTTTATTTTATTT
Found at i:7140342 original size:11 final size:11
Alignment explanation
Indices: 7140312--7140354 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
7140302 TGACCTTTTC
7140312 AAGGTATGGG-
1 AAGGTATGGGA
* *
7140322 TAGATATGGGA
1 AAGGTATGGGA
*
7140333 AAGGTATGGGC
1 AAGGTATGGGA
7140344 AAGGTATGGGA
1 AAGGTATGGGA
7140355 TATATTCTAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
10 8 0.31
11 18 0.69
ACGTcount: A:0.33, C:0.02, G:0.44, T:0.21
Consensus pattern (11 bp):
AAGGTATGGGA
Found at i:7144424 original size:18 final size:18
Alignment explanation
Indices: 7144401--7144493 Score: 132
Period size: 18 Copynumber: 5.2 Consensus size: 18
7144391 CCCAACTACT
*
7144401 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
**
7144419 GTATACGTGAATAGTGTC
1 GTATACGTGAATAGTACC
7144437 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
* *
7144455 ATATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
*
7144473 TTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
7144491 GTA
1 GTA
7144494 AACGGTCGTA
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 65 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:7144453 original size:36 final size:36
Alignment explanation
Indices: 7144401--7144493 Score: 150
Period size: 36 Copynumber: 2.6 Consensus size: 36
7144391 CCCAACTACT
* *
7144401 GTATACGTGAACAGTACCGTATACGTGAATAGTGTC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
*
7144437 GTATACGTGAATAGTACCATATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
*
7144473 TTATACGTGAATAGTACCGTA
1 GTATACGTGAATAGTACCGTA
7144494 AACGGTCGTA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 52 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (36 bp):
GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
Found at i:7145056 original size:11 final size:11
Alignment explanation
Indices: 7145026--7145068 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
7145016 TGACCTTTCC
7145026 AAGGTATGGG-
1 AAGGTATGGGA
* *
7145036 TAGATATGGGA
1 AAGGTATGGGA
*
7145047 AAGGTATGGGC
1 AAGGTATGGGA
7145058 AAGGTATGGGA
1 AAGGTATGGGA
7145069 TATATTCTAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
10 8 0.31
11 18 0.69
ACGTcount: A:0.33, C:0.02, G:0.44, T:0.21
Consensus pattern (11 bp):
AAGGTATGGGA
Found at i:7146756 original size:16 final size:16
Alignment explanation
Indices: 7146717--7146763 Score: 78
Period size: 16 Copynumber: 3.0 Consensus size: 16
7146707 TTGTAATTAA
*
7146717 AATAATTAAAATTTAT
1 AATAATTTAAATTTAT
7146733 AATAATTTAAATTTAT
1 AATAATTTAAATTTAT
7146749 AATAATTT-AATTTAT
1 AATAATTTAAATTTAT
7146764 TTAAATTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
15 7 0.23
16 23 0.77
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
AATAATTTAAATTTAT
Found at i:7146818 original size:17 final size:17
Alignment explanation
Indices: 7146782--7146819 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
7146772 TTCTATTCAT
*
7146782 AATAATTTAAACTCTGA
1 AATAATTTAAACTCTAA
7146799 AATAATTTAAA-TCTCAA
1 AATAATTTAAACTCT-AA
7146816 AATA
1 AATA
7146820 TTATTCGCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 3 0.16
17 16 0.84
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (17 bp):
AATAATTTAAACTCTAA
Found at i:7148631 original size:24 final size:24
Alignment explanation
Indices: 7148572--7148632 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
7148562 CAGTGGGAAT
*
7148572 GGCAACAACAATGGTAACGGATAT
1 GGCAACAACAATGGTAACGGATAG
* *
7148596 GGCAACAGCAATGGTAAGGGCA-AG
1 GGCAACAACAATGGTAACGG-ATAG
*
7148620 GGCGACAACAATG
1 GGCAACAACAATG
7148633 AGGACAAACG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 30 0.97
25 1 0.03
ACGTcount: A:0.39, C:0.18, G:0.31, T:0.11
Consensus pattern (24 bp):
GGCAACAACAATGGTAACGGATAG
Found at i:7159427 original size:17 final size:16
Alignment explanation
Indices: 7159389--7159439 Score: 57
Period size: 17 Copynumber: 3.1 Consensus size: 16
7159379 TAGACAAAAG
* *
7159389 TATTCAATCTGATGTT
1 TATTCAATTTGATATT
7159405 TCATTCAATTTGATCATT
1 T-ATTCAATTTGAT-ATT
*
7159423 TATTCAATTTCATATT
1 TATTCAATTTGATATT
7159439 T
1 T
7159440 TTACATTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
16 5 0.17
17 22 0.73
18 3 0.10
ACGTcount: A:0.27, C:0.14, G:0.06, T:0.53
Consensus pattern (16 bp):
TATTCAATTTGATATT
Found at i:7162019 original size:27 final size:27
Alignment explanation
Indices: 7161987--7162040 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
7161977 CCCGTGATCG
7161987 CATAACCACTGTCAACCAAAAGCCTTA
1 CATAACCACTGTCAACCAAAAGCCTTA
*
7162014 CATAACCACTGTCAACTAAAAGCCTTA
1 CATAACCACTGTCAACCAAAAGCCTTA
7162041 GTTATACTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.41, C:0.31, G:0.07, T:0.20
Consensus pattern (27 bp):
CATAACCACTGTCAACCAAAAGCCTTA
Found at i:7174004 original size:46 final size:46
Alignment explanation
Indices: 7173546--7173992 Score: 689
Period size: 46 Copynumber: 9.7 Consensus size: 46
7173536 TTCGACATGA
* * * * * * *
7173546 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACAC-GTTTCATATCAGGT
* ** * *** *
7173592 TGCCATGGTATCATTCAACCATGGTCTTATTCATTTCCCCGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTT-CATATCAGGT
* * *
7173639 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
*
7173685 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
7173731 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
7173777 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
7173823 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
7173869 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
*
7173915 TGTCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
7173961 TGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACAC
7173993 ATTTTCTATC
Statistics
Matches: 381, Mismatches: 18, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
45 3 0.01
46 339 0.89
47 39 0.10
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
Found at i:7176102 original size:11 final size:11
Alignment explanation
Indices: 7176086--7176137 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
7176076 TATACTAAAT
7176086 AAATAATAATA
1 AAATAATAATA
*
7176097 AAATAAT-ATT
1 AAATAATAATA
* *
7176107 AAATATCTCATA
1 AAATA-ATAATA
*
7176119 AAATATTAATA
1 AAATAATAATA
7176130 AAATAATA
1 AAATAATA
7176138 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:7193541 original size:16 final size:16
Alignment explanation
Indices: 7193519--7193558 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 16
7193509 AAAGGTGTGT
7193519 TTTGAATT-GAAATGA
1 TTTGAATTAGAAATGA
7193534 TATTGAATTGAGAAATGA
1 T-TTGAATT-AGAAATGA
7193552 TTTGAAT
1 TTTGAAT
7193559 ACCCTATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 1 0.05
16 7 0.32
17 6 0.27
18 8 0.36
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (16 bp):
TTTGAATTAGAAATGA
Found at i:7193739 original size:27 final size:27
Alignment explanation
Indices: 7193701--7193752 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
7193691 TTTAATGCCT
7193701 TTCTGGTGTGTTTGGGAGGATTATTTA
1 TTCTGGTGTGTTTGGGAGGATTATTTA
**
7193728 TTCTGGTGTGTTTGGTTGGATTATT
1 TTCTGGTGTGTTTGGGAGGATTATT
7193753 CTGGTGTGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.12, C:0.04, G:0.33, T:0.52
Consensus pattern (27 bp):
TTCTGGTGTGTTTGGGAGGATTATTTA
Found at i:7193751 original size:23 final size:23
Alignment explanation
Indices: 7193725--7193770 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
7193715 GGAGGATTAT
7193725 TTATTCTGGTGTGTTTGGTTGGA
1 TTATTCTGGTGTGTTTGGTTGGA
7193748 TTATTCTGGTGTGTTTGGTTGGA
1 TTATTCTGGTGTGTTTGGTTGGA
7193771 ATCTGTGTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.09, C:0.04, G:0.35, T:0.52
Consensus pattern (23 bp):
TTATTCTGGTGTGTTTGGTTGGA
Done.