Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 240 of 333
Found at i:79255145 original size:45 final size:45
Alignment explanation
Indices: 79255081--79255169 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
79255071 TGTTATTGAT
* *
79255081 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
79255126 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
79255170 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:79262216 original size:18 final size:17
Alignment explanation
Indices: 79262183--79262221 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
79262173 TTGTATAAAT
79262183 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
79262201 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
79262218 TGTG
1 TGTG
79262222 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:79262474 original size:23 final size:23
Alignment explanation
Indices: 79262447--79262544 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
79262437 AGTGTTATTG
79262447 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
79262470 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
79262493 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
79262515 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
79262538 ATCAGTG
1 ATCAGTG
79262545 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:79262513 original size:45 final size:45
Alignment explanation
Indices: 79262449--79262537 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
79262439 TGTTATTGAT
* *
79262449 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
79262494 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
79262538 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:79272635 original size:86 final size:86
Alignment explanation
Indices: 79272428--79273016 Score: 580
Period size: 86 Copynumber: 6.9 Consensus size: 86
79272418 TTATTTCTGC
* * * *
79272428 TTTCAGAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGG-CTCGCATGCCGATGTATTT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC-T---GAGGTATTT
* * *
79272491 TCAATTTCTGTTTTTAATTCAT-GT
62 TCAAATTCTGTTTTTAATTTATATT
*
79272515 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
*
79272580 ATTCTGTTTTTAATCTATATT
66 ATTCTGTTTTTAATTTATATT
* * **
79272601 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGTCACATACTGAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG-GACACGCTGAGGTATTTTC
* *
79272666 AAATTCTGTTTTCAATTTCTATT
64 AAATTCTGTTTTTAATTTATATT
* ** *
79272689 TTTCCAAAATCAGTTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
* * *
79272754 TTTCTG--GTT--TTCA-A--
66 ATTCTGTTTTTAATTTATATT
* *
79272768 ----AAAAATCAACTCATATTGCGAGAGGTGAGTTGATCCCCAGGACACGCTGAGGTATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
* * * * **
79272829 AATCTATTTTTTTATTTCTGCT
66 ATTCT-GTTTTTAATTTATATT
* *
79272851 TTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTCAG
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
* * *
79272915 TTTCTGTTTTTCAAATTTCTGTT
66 ATTCTGTTTTT--AATTTATATT
* * * * * *
79272938 TGTCAAGAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-TGGCTCATGCGCTGAGCTATTTT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACA--CGCTGAGGTATTTT
*
79273002 CAATTTCTGTTTTTA
63 CAAATTCTGTTTTTA
79273017 GTATATGTTA
Statistics
Matches: 419, Mismatches: 60, Indels: 45
0.80 0.11 0.09
Matches are distributed among these distances:
75 58 0.14
78 2 0.00
80 2 0.00
81 1 0.00
82 2 0.00
84 1 0.00
85 31 0.07
86 123 0.29
87 57 0.14
88 113 0.27
89 4 0.01
90 25 0.06
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (86 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
ATTCTGTTTTTAATTTATATT
Found at i:79272870 original size:161 final size:163
Alignment explanation
Indices: 79272605--79272929 Score: 458
Period size: 161 Copynumber: 2.0 Consensus size: 163
79272595 TATATTTTTC
* * *
79272605 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGTCACATACTGAGGTATTTTCAAAT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCCAGTCACACACTGAGGTATTTTCAAAA
* **
79272670 TCTGTTTTCAATTTCTATTTTTCCAAAATCAGTTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
66 TCTGTTTTCAATTTCTACTTTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
79272735 CACGCTGAGGTAATTTCAATTTCTGGTTTTCAA
131 CACGCTGAGGTAATTTCAATTTCTGGTTTTCAA
* * * *
79272768 AAAAATCAACTCATATTGCGAGAGGTGAGTTGATCC-CCAG-GACACGCTGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCCAGTCACACACTGAGGTATTTTCAAAA
* ** *
79272831 TCTATTTTTTTATTTCTGCTTTT-CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
66 TCT-GTTTTCAATTTCTACTTTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* * * *
79272895 ACATGCTGAGGTATTTTCAGTTTCTGTTTTTCAA
130 ACACGCTGAGGTAATTTCAATTTCTGGTTTTCAA
79272929 A
1 A
79272930 TTTCTGTTTG
Statistics
Matches: 143, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
161 92 0.64
162 17 0.12
163 34 0.24
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (163 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCCAGTCACACACTGAGGTATTTTCAAAA
TCTGTTTTCAATTTCTACTTTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
CACGCTGAGGTAATTTCAATTTCTGGTTTTCAA
Found at i:79272958 original size:249 final size:249
Alignment explanation
Indices: 79272519--79272978 Score: 676
Period size: 249 Copynumber: 1.8 Consensus size: 249
79272509 TCATGTTTTC
* * *
79272519 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCCCAGGACACGCTGAGGTATTTTCAAAATC
*
79272584 TGTTTTTAATCTATATTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGTCA
66 TGTTTTTAATCTATACTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGTCA
* **
79272649 CATACTGAGGTATTTTCAAATTCTGTTTTCAATTTCTATTTTTCCAAAATCAGTTCATATTGCGA
131 CATACTGAGGTATTTTCAAATTCTGTTTTCAATTTCTATTTGTCCAAAATCAACTCATATTGCGA
*
79272714 GAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGGTTTTCAA
196 GAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGGTTTTCAA
*
79272768 AAAAATCAACTCATATTGCGAGAGGTGAGTTGATCCCCAGGACACGCTGAGGTATTTTCAAAATC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCCCAGGACACGCTGAGGTATTTTCAAAATC
* * * * * * *
79272833 TATTTTTTTATTTCTGCTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG-G
66 T-GTTTTTAATCTATACTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGTC
* ** *
79272895 ACATGCTGAGGTATTTTCAGTTTCTGTTTTTCAAATTTCTGTTTGT-CAAGAATCAACTCATATT
130 ACATACTGAGGTATTTTCAAATTCTG-TTTTC-AATTTCTATTTGTCCAA-AATCAACTCATATT
79272959 GCGAGAAGTGAGTTGAGCCT
192 GCGAGAAGTGAGTTGAGCCT
79272979 TGGCTCATGC
Statistics
Matches: 187, Mismatches: 20, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
247 23 0.12
248 10 0.05
249 140 0.75
250 14 0.07
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (249 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCCCAGGACACGCTGAGGTATTTTCAAAATC
TGTTTTTAATCTATACTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGTCA
CATACTGAGGTATTTTCAAATTCTGTTTTCAATTTCTATTTGTCCAAAATCAACTCATATTGCGA
GAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGGTTTTCAA
Found at i:79274779 original size:29 final size:29
Alignment explanation
Indices: 79274737--79274794 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
79274727 GTTTTTAGTC
* *
79274737 CTCCTACTATTTGCGCGTGTTGGAATAGG
1 CTCCTACTATTTGCACGTGTTAGAATAGG
79274766 CTCCTACTATTTGCACGTGTTAGAATAGG
1 CTCCTACTATTTGCACGTGTTAGAATAGG
79274795 TCGTTCTCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.34
Consensus pattern (29 bp):
CTCCTACTATTTGCACGTGTTAGAATAGG
Found at i:79274922 original size:18 final size:18
Alignment explanation
Indices: 79274889--79274935 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
79274879 ATTAAATTTG
*
79274889 TAATATTA--ATTCTATT
1 TAATATTATTATTATATT
79274905 TAATATTATTATTATATT
1 TAATATTATTATTATATT
*
79274923 TACTATTATTATT
1 TAATATTATTATT
79274936 TATAAATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
16 8 0.30
18 19 0.70
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (18 bp):
TAATATTATTATTATATT
Found at i:79278005 original size:13 final size:13
Alignment explanation
Indices: 79277987--79278029 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
79277977 TAGATTTTTC
79277987 CTAAATATTATCA
1 CTAAATATTATCA
79278000 CTAAATA--ATC-
1 CTAAATATTATCA
79278010 CTAAATATTATCA
1 CTAAATATTATCA
79278023 CTAAATA
1 CTAAATA
79278030 AATCAAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 7 0.26
11 3 0.11
12 3 0.11
13 14 0.52
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:79278012 original size:23 final size:23
Alignment explanation
Indices: 79277985--79278030 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
79277975 GCTAGATTTT
79277985 TCCTAAATATTATCACTAAATAA
1 TCCTAAATATTATCACTAAATAA
79278008 TCCTAAATATTATCACTAAATAA
1 TCCTAAATATTATCACTAAATAA
79278031 ATCAAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (23 bp):
TCCTAAATATTATCACTAAATAA
Found at i:79278038 original size:23 final size:23
Alignment explanation
Indices: 79277989--79278038 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
79277979 GATTTTTCCT
*
79277989 AAATATTATCACTAAATAATCCT
1 AAATATTATCACTAAATAATCCA
79278012 AAATATTATCACTAAATAAAT-CA
1 AAATATTATCACTAAAT-AATCCA
79278035 AAAT
1 AAAT
79278039 TTAAAAATCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 22 0.88
24 3 0.12
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (23 bp):
AAATATTATCACTAAATAATCCA
Found at i:79280242 original size:31 final size:32
Alignment explanation
Indices: 79280207--79280283 Score: 88
Period size: 31 Copynumber: 2.5 Consensus size: 32
79280197 ATGATGCTAG
* *
79280207 AGATATTTTAATATTTTA-TAAT-TATTTAATT
1 AGATATTTTATTATTTTATTAATAT-TTTAATA
**
79280238 AGATA-AATATTATTTTATTAATATTTTAATA
1 AGATATTTTATTATTTTATTAATATTTTAATA
79280269 AGATATTTTATTATT
1 AGATATTTTATTATT
79280284 ATTTTATTAG
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
30 9 0.24
31 20 0.54
32 8 0.22
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (32 bp):
AGATATTTTATTATTTTATTAATATTTTAATA
Found at i:79280262 original size:11 final size:11
Alignment explanation
Indices: 79280248--79280292 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
79280238 AGATAAATAT
79280248 TATTTTATTAA
1 TATTTTATTAA
*
79280259 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
79280272 TATTTTATTAT
1 TATTTTATTAA
79280283 TATTTTATTA
1 TATTTTATTA
79280293 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:79282244 original size:62 final size:62
Alignment explanation
Indices: 79282137--79282289 Score: 279
Period size: 62 Copynumber: 2.5 Consensus size: 62
79282127 AATTGATGGT
* *
79282137 AAAAAGGATCTAGCCCGGACGGGTGATCCTATCCTGATATAGCCCTCCCAAAGAATATGTGG
1 AAAATGGATTTAGCCCGGACGGGTGATCCTATCCTGATATAGCCCTCCCAAAGAATATGTGG
79282199 AAAATGGATTTAGCCCGGACGGGTGATCCTATCCTGATATAGCCCTCCCAAAGAATATGTGG
1 AAAATGGATTTAGCCCGGACGGGTGATCCTATCCTGATATAGCCCTCCCAAAGAATATGTGG
*
79282261 AAAATGGATTTAGCCCGGACGGGTAATCC
1 AAAATGGATTTAGCCCGGACGGGTGATCC
79282290 GAATTAGGGT
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 88 1.00
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.22
Consensus pattern (62 bp):
AAAATGGATTTAGCCCGGACGGGTGATCCTATCCTGATATAGCCCTCCCAAAGAATATGTGG
Found at i:79282540 original size:46 final size:46
Alignment explanation
Indices: 79282473--79282838 Score: 502
Period size: 46 Copynumber: 8.0 Consensus size: 46
79282463 AGTGTGCTCT
*
79282473 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
*
79282519 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACTATGGCAAC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
* *
79282565 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGAAAC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
*
79282611 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
79282657 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
* *** * *
79282703 ATGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
79282749 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
79282795 ATGACA-GAAAATG-AGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTA-TAAGACCATGGTTGAAAGATACCATGGCA
79282839 TCATGTCAAA
Statistics
Matches: 296, Mismatches: 22, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
45 2 0.01
46 294 0.99
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:79283145 original size:16 final size:17
Alignment explanation
Indices: 79283124--79283156 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
79283114 ATGATGGAGC
79283124 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
79283140 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
79283157 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:79284549 original size:10 final size:10
Alignment explanation
Indices: 79284534--79284558 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
79284524 TCTATCAATG
79284534 AAAAAAATCT
1 AAAAAAATCT
79284544 AAAAAAATCT
1 AAAAAAATCT
79284554 AAAAA
1 AAAAA
79284559 CCAACGACAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAAAAATCT
Found at i:79285719 original size:23 final size:23
Alignment explanation
Indices: 79285693--79285742 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
79285683 TGATTTTTAA
79285693 ATTTTA-ATTTATTTAGTGATAAT
1 ATTTTAGA-TTATTTAGTGATAAT
79285716 A-TTTAGGATTATTTAGTGATAAT
1 ATTTTA-GATTATTTAGTGATAAT
79285739 ATTT
1 ATTT
79285743 AGGAAAAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 4 0.17
23 17 0.71
24 3 0.12
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (23 bp):
ATTTTAGATTATTTAGTGATAAT
Found at i:79285720 original size:13 final size:13
Alignment explanation
Indices: 79285702--79285744 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
79285692 AATTTTAATT
79285702 TATTTAGTGATAA
1 TATTTAGTGATAA
79285715 TATTTAG-GAT--
1 TATTTAGTGATAA
79285725 TATTTAGTGATAA
1 TATTTAGTGATAA
79285738 TATTTAG
1 TATTTAG
79285745 GAAAAATCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 7 0.26
11 3 0.11
12 3 0.11
13 14 0.52
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:79285743 original size:23 final size:23
Alignment explanation
Indices: 79285701--79285746 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
79285691 AAATTTTAAT
79285701 TTATTTAGTGATAATATTTAGGA
1 TTATTTAGTGATAATATTTAGGA
79285724 TTATTTAGTGATAATATTTAGGA
1 TTATTTAGTGATAATATTTAGGA
79285747 AAAATCTAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.48
Consensus pattern (23 bp):
TTATTTAGTGATAATATTTAGGA
Found at i:79290920 original size:21 final size:20
Alignment explanation
Indices: 79290896--79290935 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
79290886 TATGAGCTTT
*
79290896 AATGATTGATGATAGATTATG
1 AATGATTAATGATAG-TTATG
*
79290917 AATGTTTAATGATAGTTAT
1 AATGATTAATGATAGTTAT
79290936 ATAAGTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.38, C:0.00, G:0.20, T:0.42
Consensus pattern (20 bp):
AATGATTAATGATAGTTATG
Found at i:79292771 original size:11 final size:12
Alignment explanation
Indices: 79292746--79292779 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
79292736 GGGAAAGAAA
79292746 GAAAGAAAAAGG
1 GAAAGAAAAAGG
79292758 GAAAGAAAAAGG
1 GAAAGAAAAAGG
*
79292770 AAAAGGAAAA
1 GAAA-GAAAA
79292780 TTAGGGTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 15 0.75
13 5 0.25
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (12 bp):
GAAAGAAAAAGG
Found at i:79293613 original size:6 final size:6
Alignment explanation
Indices: 79293602--79293627 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
79293592 TTCGTACCTG
79293602 ACTGTT ACTGTT ACTGTT ACTGTT AC
1 ACTGTT ACTGTT ACTGTT ACTGTT AC
79293628 CCTTACGGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (6 bp):
ACTGTT
Found at i:79299709 original size:26 final size:26
Alignment explanation
Indices: 79299672--79299781 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
79299662 CATGAAATTC
79299672 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
79299698 TTATCATTAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
79299724 TTATCATGGAGCATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
79299750 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
79299776 TTATCA
1 TTATCA
79299782 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:79300560 original size:38 final size:40
Alignment explanation
Indices: 79300465--79300591 Score: 143
Period size: 40 Copynumber: 3.2 Consensus size: 40
79300455 CTGTGTCACG
* * * *
79300465 GGCGTGTCTTTGGCCTTGTAAGACACACGGTCAGGCCACA
1 GGCGTGTCTTTAGCCGTGTGAGACACATGGTCAGGCCACA
79300505 GGCGTGTCTTTCA-CCGTGTGAGACACATGGT-AGGCCACA
1 GGCGTGTCTTT-AGCCGTGTGAGACACATGGTCAGGCCACA
* * *
79300544 -GCGTGTCTTTAGCCGTGTGAGACATATGGCCGAGCCACACA
1 GGCGTGTCTTTAGCCGTGTGAGACACATGGTC-AGGC-CACA
79300585 GGCGTGT
1 GGCGTGT
79300592 GTCCTCTGTT
Statistics
Matches: 74, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
37 1 0.01
38 26 0.35
39 8 0.11
40 29 0.39
41 4 0.05
42 6 0.08
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (40 bp):
GGCGTGTCTTTAGCCGTGTGAGACACATGGTCAGGCCACA
Found at i:79301363 original size:16 final size:16
Alignment explanation
Indices: 79301334--79301367 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
79301324 AACACAATAT
* *
79301334 ATTATTAATTAATAAA
1 ATTATAAATAAATAAA
79301350 ATTATAAATAAATAAA
1 ATTATAAATAAATAAA
79301366 AT
1 AT
79301368 CATTAAATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
ATTATAAATAAATAAA
Found at i:79301969 original size:15 final size:14
Alignment explanation
Indices: 79301945--79301974 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
79301935 CTTATACTTA
79301945 TTTTATTATTAATG
1 TTTTATTATTAATG
79301959 TTTTCATTATTAATG
1 TTTT-ATTATTAATG
79301974 T
1 T
79301975 AATAGTCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.27, C:0.03, G:0.07, T:0.63
Consensus pattern (14 bp):
TTTTATTATTAATG
Found at i:79303901 original size:40 final size:40
Alignment explanation
Indices: 79303847--79303926 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
79303837 AGCCGTGTGT
*
79303847 CACACACGGCCTATATACACGTCCGTGTGTCTTACCTGTA
1 CACACACAGCCTATATACACGTCCGTGTGTCTTACCTGTA
79303887 CACACACAGCCTATATACACGTCCGTGTGTCTTACCTGTA
1 CACACACAGCCTATATACACGTCCGTGTGTCTTACCTGTA
79303927 TGGACAAACT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.28
Consensus pattern (40 bp):
CACACACAGCCTATATACACGTCCGTGTGTCTTACCTGTA
Found at i:79304740 original size:47 final size:47
Alignment explanation
Indices: 79304639--79305228 Score: 382
Period size: 47 Copynumber: 12.7 Consensus size: 47
79304629 TATGCGTACT
* * * *
79304639 GATGCATGTCCCAGACATGTATTACACTAGC-A-C-AACTCTTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCTATCTC-GAGGCC
** * * *
79304683 GATGTGTGTCCCAAACACGTCTTACACTGGCTATCTATGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCTATCTCGAGGCC
* * *
79304730 GATGCATGTCCCAAACATGTCTTACTCTGGC-A-CTCATCTCTG-TGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCT-ATCTC-GAGGCC
* * * * *
79304776 GATACCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCG-TGCT
1 GAT-GCATGTCCCAGACAT-GTCTTACACTGGCTATC-TATCT-CGAGGCC
* * * *
79304826 GATGCATGTCCCAGACATGTCTTACACTAG-TA-C-AACTCTTA-GTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCTATCTC-GAGGCC
* * * *
79304870 GATGCGTGTCCCAGACACGTCTTACACTGGCTATCTCTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCTATCTCGAGGCC
* * *
79304917 GATGTATGTCCCAGACATGTCTTACTCTGGC-A-CTCATCTCTG-TGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCT-ATCTC-GAGGCC
* * * * * *
79304963 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTATGCG-TGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-TATCT-CGAGGCC
* * *
79305013 GATGCATGTCCCAGACATGTCTTACACTAGC-A-C-AACTCTTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCTATCTC-GAGGCC
* * * *
79305057 GATGCGTGTCCCAGACACGTCTTACACTGGCTATCTCTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCTATCTCGAGGCC
* * **
79305104 GATGCATGTCCCAGACATGTCTTACTCTGGC-A-CTCATCTCTATACC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCT-ATCTCGAGGCC
* * * * *
79305150 GATGCCATGTCCCAGACATGGTCTTACTCTGGCTCTC-ATAAT-GTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCTAT-CTCGAGGCC
*
79305198 GAAGCATGTCCCAGACATGTCTTACACTGGC
1 GATGCATGTCCCAGACATGTCTTACACTGGC
79305229 GCACAAATCA
Statistics
Matches: 427, Mismatches: 81, Indels: 74
0.73 0.14 0.13
Matches are distributed among these distances:
43 2 0.00
44 86 0.20
45 10 0.02
46 53 0.12
47 154 0.36
48 66 0.15
49 29 0.07
50 23 0.05
51 4 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTATCTATCTCGAGGCC
Found at i:79304913 original size:187 final size:187
Alignment explanation
Indices: 79304588--79305225 Score: 1082
Period size: 187 Copynumber: 3.4 Consensus size: 187
79304578 GATAAATTGT
* * *
79304588 CGATGCCATGTCCCAAATATGGTCTTACACTAGCTCTCATATATGCGTACTGATGCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATGCGTGCTGATGCATGTCCCAG
* * *
79304653 ACATGTATTACACTAGCACAACTCTTAGCCGATGTGTGTCCCAAACACGTCTTACACTGGCTATC
66 ACATGTCTTACACTAGCACAACTCTTAGCCGATGCGTGTCCCAGACACGTCTTACACTGGCTATC
* *
79304718 TATGTCGAGGCCGATGCATGTCCCAAACATGTCTTACTCTGGCACTCATCTCTGTGC
131 TCTGTCGAGGCCGATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTGTGC
* *
79304775 CGATACCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCGTGCTGATGCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATGCGTGCTGATGCATGTCCCAG
* *
79304840 ACATGTCTTACACTAGTACAACTCTTAGTCGATGCGTGTCCCAGACACGTCTTACACTGGCTATC
66 ACATGTCTTACACTAGCACAACTCTTAGCCGATGCGTGTCCCAGACACGTCTTACACTGGCTATC
*
79304905 TCTGTCGAGGCCGATGTATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTGTGC
131 TCTGTCGAGGCCGATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTGTGC
*
79304962 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTATGCGTGCTGATGCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATGCGTGCTGATGCATGTCCCAG
79305027 ACATGTCTTACACTAGCACAACTCTTAGCCGATGCGTGTCCCAGACACGTCTTACACTGGCTATC
66 ACATGTCTTACACTAGCACAACTCTTAGCCGATGCGTGTCCCAGACACGTCTTACACTGGCTATC
* *
79305092 TCTGTCGAGGCCGATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTATAC
131 TCTGTCGAGGCCGATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTGTGC
* * * *
79305149 CGATGCCATGTCCCAGACATGGTCTTACTCTGGCTCTCATA-ATGTG-GCTGAAGCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATGCGTGCTGATGCATGTCCCAG
79305212 ACATGTCTTACACT
66 ACATGTCTTACACT
79305226 GGCGCACAAA
Statistics
Matches: 425, Mismatches: 26, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
185 30 0.07
186 4 0.01
187 391 0.92
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.29
Consensus pattern (187 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATGCGTGCTGATGCATGTCCCAG
ACATGTCTTACACTAGCACAACTCTTAGCCGATGCGTGTCCCAGACACGTCTTACACTGGCTATC
TCTGTCGAGGCCGATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTGTGC
Found at i:79312826 original size:149 final size:149
Alignment explanation
Indices: 79312548--79312845 Score: 391
Period size: 149 Copynumber: 2.0 Consensus size: 149
79312538 CATTGGACCC
* * **
79312548 AGAGGTGGTCAAATAATCGGATGCATAAAAATCAGGGAGACGAGGCAACCCTACACATGGCGAGG
1 AGAGGTGGTCAAATAATCAGATACATAAAAATCAAAGAGACGAGGCAACCCTACACATGGCGAGG
* * * * * * ** *
79312613 CATTAATTTCATGGACACGCGCCTTCAGTTTAGTGTGCCATAGCACATTAGGCCTATGACTTTGT
66 CATCAATGTCATGAACACGCACCCTCAATTTAGTGCACCATAGCACATTAGGCCCATGACTTTGT
* *
79312678 TCTGAAAAATTACCAACAT
131 GCCGAAAAATTACCAACAT
* * * *
79312697 AGAGGTGGTCAAATAATCAGATACATGAAAATTAAAGAGACGAGGCAACTCTACGCATGGCGAGG
1 AGAGGTGGTCAAATAATCAGATACATAAAAATCAAAGAGACGAGGCAACCCTACACATGGCGAGG
* *
79312762 CATCAATGTCATGAACATGCACCCTCAATTTAGTGCACCA-AGGCACATTAGGCCCATGATTTTG
66 CATCAATGTCATGAACACGCACCCTCAATTTAGTGCACCATA-GCACATTAGGCCCATGACTTTG
79312826 TGCCGAAAAATTACCAACAT
130 TGCCGAAAAATTACCAACAT
79312846 TTTCAAGCCC
Statistics
Matches: 127, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
148 1 0.01
149 126 0.99
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (149 bp):
AGAGGTGGTCAAATAATCAGATACATAAAAATCAAAGAGACGAGGCAACCCTACACATGGCGAGG
CATCAATGTCATGAACACGCACCCTCAATTTAGTGCACCATAGCACATTAGGCCCATGACTTTGT
GCCGAAAAATTACCAACAT
Found at i:79314696 original size:13 final size:13
Alignment explanation
Indices: 79314678--79314720 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
79314668 TAGATTTTTC
79314678 CTAAATATTATCA
1 CTAAATATTATCA
79314691 CTAAATA--ATC-
1 CTAAATATTATCA
79314701 CTAAATATTATCA
1 CTAAATATTATCA
79314714 CTAAATA
1 CTAAATA
79314721 AATTAAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 7 0.26
11 3 0.11
12 3 0.11
13 14 0.52
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:79314704 original size:23 final size:23
Alignment explanation
Indices: 79314676--79314721 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
79314666 TTTAGATTTT
79314676 TCCTAAATATTATCACTAAATAA
1 TCCTAAATATTATCACTAAATAA
79314699 TCCTAAATATTATCACTAAATAA
1 TCCTAAATATTATCACTAAATAA
79314722 ATTAAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (23 bp):
TCCTAAATATTATCACTAAATAA
Found at i:79318531 original size:13 final size:13
Alignment explanation
Indices: 79318513--79318555 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
79318503 AATTTTGATT
79318513 TATTTAGTGATAA
1 TATTTAGTGATAA
79318526 TATTTAG-GAT--
1 TATTTAGTGATAA
*
79318536 TACTTAGTGATAA
1 TATTTAGTGATAA
79318549 TATTTAG
1 TATTTAG
79318556 GAAAAATCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 6 0.24
11 3 0.12
12 3 0.12
13 13 0.52
ACGTcount: A:0.35, C:0.02, G:0.16, T:0.47
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:79327544 original size:31 final size:30
Alignment explanation
Indices: 79327498--79327559 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 30
79327488 TTCATCCAGG
79327498 TAAGCCTTTTTTTCTTCCATTCTTCAACTT
1 TAAGCCTTTTTTTCTTCCATTCTTCAACTT
*
79327528 TAAGCTTTCTTTTTCTTCCATTCTTCAACTT
1 TAAGCCTT-TTTTTCTTCCATTCTTCAACTT
79327559 T
1 T
79327560 TTCCATCTCC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.16, C:0.26, G:0.03, T:0.55
Consensus pattern (30 bp):
TAAGCCTTTTTTTCTTCCATTCTTCAACTT
Found at i:79330126 original size:92 final size:93
Alignment explanation
Indices: 79329984--79330168 Score: 309
Period size: 92 Copynumber: 2.0 Consensus size: 93
79329974 AGCAATCCTT
* * *
79329984 TTCTTAGCCTTTATTTACTTTTGTTAGGATTGAGCTCTGATTAGATATTTTGTTTTGGGTTTAAT
1 TTCTTAGCCTTTATTTACTTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT
79330049 TGTTGATTCATCTTTTTTCTATTATTTC
66 TGTTGATTCATCTTTTTTCTATTATTTC
* *
79330077 TTCTTCGCCTTTATTTGC-TTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT
1 TTCTTAGCCTTTATTTACTTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT
*
79330141 TGTTTATTCATCTTTTTTCTATTATTTC
66 TGTTGATTCATCTTTTTTCTATTATTTC
79330169 CTGGCAGCTC
Statistics
Matches: 86, Mismatches: 6, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 70 0.81
93 16 0.19
ACGTcount: A:0.17, C:0.11, G:0.15, T:0.57
Consensus pattern (93 bp):
TTCTTAGCCTTTATTTACTTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT
TGTTGATTCATCTTTTTTCTATTATTTC
Found at i:79330641 original size:25 final size:25
Alignment explanation
Indices: 79330605--79330654 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
79330595 AAGGTTAATG
*
79330605 CTATTTGTCAATTCCCATTCAACAT
1 CTATTTGCCAATTCCCATTCAACAT
79330630 CTATTTGCCAATTCCCATTCAACAT
1 CTATTTGCCAATTCCCATTCAACAT
79330655 TCTCTCTCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.04, T:0.38
Consensus pattern (25 bp):
CTATTTGCCAATTCCCATTCAACAT
Found at i:79332480 original size:15 final size:14
Alignment explanation
Indices: 79332462--79332491 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
79332452 AATGACTATT
79332462 ACATTAATAATGAAA
1 ACATTAATAAT-AAA
79332477 ACATTAATAATAAA
1 ACATTAATAATAAA
79332491 A
1 A
79332492 TAAGTATAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.63, C:0.07, G:0.03, T:0.27
Consensus pattern (14 bp):
ACATTAATAATAAA
Found at i:79332862 original size:26 final size:27
Alignment explanation
Indices: 79332832--79332898 Score: 100
Period size: 26 Copynumber: 2.5 Consensus size: 27
79332822 AGTTTTGAGA
79332832 TATAAATTAAAAATAAATAAATAAA-T
1 TATAAATTAAAAATAAATAAATAAATT
*
79332858 TATAAATTAAGAATAAATAAATAAATT
1 TATAAATTAAAAATAAATAAATAAATT
* *
79332885 TATACATTATAAAT
1 TATAAATTAAAAAT
79332899 TAGGTTGCCA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 24 0.67
27 12 0.33
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (27 bp):
TATAAATTAAAAATAAATAAATAAATT
Found at i:79333535 original size:13 final size:13
Alignment explanation
Indices: 79333513--79333550 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
79333503 TATTTAAAAT
*
79333513 AATAAATAATTAA
1 AATAATTAATTAA
*
79333526 AATAATTAATTAT
1 AATAATTAATTAA
79333539 AAT-ATTAATTAA
1 AATAATTAATTAA
79333551 GTGATAATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
12 8 0.36
13 14 0.64
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
AATAATTAATTAA
Found at i:79336299 original size:39 final size:38
Alignment explanation
Indices: 79336252--79336361 Score: 103
Period size: 39 Copynumber: 2.8 Consensus size: 38
79336242 ATAAAGATGC
* *
79336252 TTTAGAGTATTGTGGTATATGCTTGAATGTTATGTGAT
1 TTTAGAGTATTGTGATATATGCTTGAATGTTATGAGAT
* * * * * *
79336290 TTTACGAGTATTATGACATATACTTAAACGTCATGAGAT
1 TTTA-GAGTATTGTGATATATGCTTGAATGTTATGAGAT
* * *
79336329 TATATGAGTATGGTGATATATGCTTGTATGTTA
1 TTTA-GAGTATTGTGATATATGCTTGAATGTTA
79336362 AATGACCTAA
Statistics
Matches: 53, Mismatches: 18, Indels: 1
0.74 0.25 0.01
Matches are distributed among these distances:
38 4 0.08
39 49 0.92
ACGTcount: A:0.29, C:0.06, G:0.22, T:0.43
Consensus pattern (38 bp):
TTTAGAGTATTGTGATATATGCTTGAATGTTATGAGAT
Found at i:79340455 original size:5 final size:5
Alignment explanation
Indices: 79340445--79340469 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
79340435 AGTTATATTG
79340445 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
79340470 TATGAGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:79343781 original size:54 final size:53
Alignment explanation
Indices: 79343700--79343835 Score: 137
Period size: 54 Copynumber: 2.5 Consensus size: 53
79343690 CTTACGGGAT
* * **
79343700 TTTACGAATCTTGGAGTTTGCTAATTTACGATCACAACCTTTTACTTTCGAGAA
1 TTTACGAATC-TCGAGTTTGCTAATTTACGATCACAACATTTTACTGACGAGAA
* * ** *
79343754 TTTACGAATCTCGAGCTTTGTTGATTTACGATCATGACATTTTACTGACGAGAC
1 TTTACGAATCTCGAG-TTTGCTAATTTACGATCACAACATTTTACTGACGAGAA
* * *
79343808 TTTATGAATCTCGTAGTTCGCTGATTTA
1 TTTACGAATCTCG-AGTTTGCTAATTTA
79343836 TGATTACGAC
Statistics
Matches: 68, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
53 4 0.06
54 62 0.91
55 2 0.03
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.40
Consensus pattern (53 bp):
TTTACGAATCTCGAGTTTGCTAATTTACGATCACAACATTTTACTGACGAGAA
Found at i:79343940 original size:54 final size:54
Alignment explanation
Indices: 79343847--79343979 Score: 142
Period size: 54 Copynumber: 2.5 Consensus size: 54
79343837 GATTACGACC
* * * * * *
79343847 TACTTATAGGATTTTACGACTCTCATGGTCTACTTATTTATGATGAA-AACCTTT
1 TACTTATGGGATTTTACGAATCTCAAGGTCCACTGATTTACGAT-AACAACCTTT
* *
79343901 TACTTATGGGATTTTACGAATCTCAAGGTCCGCTGATTTACGATAACGACCTTT
1 TACTTATGGGATTTTACGAATCTCAAGGTCCACTGATTTACGATAACAACCTTT
* ** *
79343955 TACTTACGAAATTTTATGAATCTCA
1 TACTTATGGGATTTTACGAATCTCA
79343980 CGATTCGCTA
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
53 2 0.03
54 64 0.97
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (54 bp):
TACTTATGGGATTTTACGAATCTCAAGGTCCACTGATTTACGATAACAACCTTT
Found at i:79344076 original size:19 final size:19
Alignment explanation
Indices: 79344030--79344077 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
79344020 GTATATATTT
*
79344030 TAAA-TTTATTTAAGTAGA
1 TAAATTTTATTTAAGAAGA
* *
79344048 TAAATCTTATTTAGGAAGA
1 TAAATTTTATTTAAGAAGA
79344067 TAAATTTTATT
1 TAAATTTTATT
79344078 CATATTCTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.42, C:0.02, G:0.10, T:0.46
Consensus pattern (19 bp):
TAAATTTTATTTAAGAAGA
Found at i:79344159 original size:42 final size:42
Alignment explanation
Indices: 79344101--79344184 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
79344091 TATTTTTATT
*
79344101 TTATCTTTTAGTAGTTTATTAGAATAAGGGAACTATTTTCCC
1 TTATCTTTTAGTAGTTTATTAGAATAAAGGAACTATTTTCCC
* *
79344143 TTATGTTTTAGTAGTTTATTAGAATAAATGAACTATTTTCCC
1 TTATCTTTTAGTAGTTTATTAGAATAAAGGAACTATTTTCCC
79344185 AATTAGGATT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.46
Consensus pattern (42 bp):
TTATCTTTTAGTAGTTTATTAGAATAAAGGAACTATTTTCCC
Found at i:79349002 original size:206 final size:206
Alignment explanation
Indices: 79348648--79349243 Score: 1104
Period size: 206 Copynumber: 2.9 Consensus size: 206
79348638 TCTCGAATGG
*
79348648 AGATCTGCTATGTATCTGCTCTCCGTCAAAATGGAGATGCCAGACTTCGACTTGTTCTCTGACAA
1 AGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTGTTCTCTGACAA
79348713 TACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCAAATCAGCTATG
66 TACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCAAATCAGCTATG
79348778 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTAGATCTTGCTTCAGTATAAAC
131 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTAGATCTTGCTTCAGTATAAAC
79348843 ATCTGAAGGCC
196 ATCTGAAGGCC
*
79348854 AGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTCTTCTCTGACAA
1 AGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTGTTCTCTGACAA
*
79348919 TACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCATAAGCACGCGAAAGCCAAATCAGCTATG
66 TACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCAAATCAGCTATG
79348984 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTAGATCTTGCTTCAGTATAAAC
131 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTAGATCTTGCTTCAGTATAAAC
79349049 ATCTGAAGGCC
196 ATCTGAAGGCC
*
79349060 AGATCTGCTATGTATCTGCTCTCCATCGAAATGGAGATGCCAGACTTCGACTTGTTCTCTGACAA
1 AGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTGTTCTCTGACAA
*
79349125 TACAGAGATGCGAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCAAATCAGCTATG
66 TACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCAAATCAGCTATG
* * * *
79349190 TCTTCGATTTGATCCTTGTAAACACAAGGATGCCAAACCATCTTGGATC-TGCTT
131 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTAGATCTTGCTT
79349244 TAGCCATATC
Statistics
Matches: 379, Mismatches: 11, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
205 5 0.01
206 374 0.99
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (206 bp):
AGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTGTTCTCTGACAA
TACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCAAATCAGCTATG
TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTAGATCTTGCTTCAGTATAAAC
ATCTGAAGGCC
Found at i:79350694 original size:40 final size:40
Alignment explanation
Indices: 79350617--79350822 Score: 254
Period size: 40 Copynumber: 5.2 Consensus size: 40
79350607 AAACCAAGTA
* * *
79350617 CCTTCGGGATTTAG-CCGGATATAGCT-ACTAGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
79350656 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
79350696 CCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* ** * * *
79350736 CCTTCGGGACTTAGCCCGGATATAATCGCTAGCATAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * **
79350776 CCTTCGGGACATAGCCCGGATATAGCAACTCGCACAAAAA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
79350816 CCTTCGG
1 CCTTCGG
79350823 ATCTTAGTCC
Statistics
Matches: 144, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 14 0.10
40 130 0.90
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:79356347 original size:46 final size:47
Alignment explanation
Indices: 79356285--79356509 Score: 307
Period size: 46 Copynumber: 4.9 Consensus size: 47
79356275 TTTGACGTGA
* * * * * *
79356285 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
* ** * *
79356331 TGTCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
*
79356377 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
79356423 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
79356469 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATAT
79356510 TAGAGAGCAC
Statistics
Matches: 164, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
45 5 0.03
46 159 0.97
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
Found at i:79366101 original size:40 final size:40
Alignment explanation
Indices: 79366027--79366208 Score: 296
Period size: 40 Copynumber: 4.6 Consensus size: 40
79366017 AACCCAAGTA
* *
79366027 CCTTCAGGACTTAG-CCGGATATAG-CAACACGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATA-GCACAAATG
* *
79366066 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
79366106 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
79366146 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
79366186 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
79366209 CATTCGAATA
Statistics
Matches: 133, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 12 0.09
40 117 0.88
41 4 0.03
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:79376020 original size:40 final size:40
Alignment explanation
Indices: 79375946--79376201 Score: 384
Period size: 40 Copynumber: 6.6 Consensus size: 40
79375936 AACCCAAGTA
*
79375946 CCTTCGGGACTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* * *
79375985 CCTTCGGGTCTTAGCCCGAATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
79376025 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
79376065 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
79376105 CCTTCGGGACTTAGCCCAGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
79376145 CCTTCGGGACTTAGCCCGG----A-T-AATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
79376179 CCTTCGGGACTTAGCCCCGATAT
1 CCTTCGGGACTTAGCCCGGATAT
79376202 CATTCGAATA
Statistics
Matches: 199, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
34 31 0.16
35 1 0.01
36 1 0.01
39 13 0.07
40 150 0.75
41 3 0.02
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:79380331 original size:19 final size:17
Alignment explanation
Indices: 79380303--79380342 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
79380293 ACATAAACAC
*
79380303 AAATATGAATAGTAACGAT
1 AAATACGAAT-GTAA-GAT
79380322 AAATACGAATGTAAGAT
1 AAATACGAATGTAAGAT
79380339 AAAT
1 AAAT
79380343 GAGTCGAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 7 0.35
18 4 0.20
19 9 0.45
ACGTcount: A:0.55, C:0.05, G:0.15, T:0.25
Consensus pattern (17 bp):
AAATACGAATGTAAGAT
Found at i:79380619 original size:33 final size:38
Alignment explanation
Indices: 79380575--79380656 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 38
79380565 ATAATAACAC
*
79380575 AATAGTTATAATAATGA-AA-A-GGTATTA-TAAT-AT
1 AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
*
79380608 AATAGTAATAATGATGATAATAGTGGTATTAGTAATAAT
1 AATAGTAATAATAATGATAATAG-GGTATTAGTAATAAT
*
79380647 AATAATAATA
1 AATAGTAATA
79380657 GAAAATAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
33 15 0.38
34 2 0.05
35 1 0.03
37 7 0.17
38 4 0.10
39 11 0.28
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.35
Consensus pattern (38 bp):
AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
Found at i:79380665 original size:19 final size:18
Alignment explanation
Indices: 79380641--79380682 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
79380631 TGGTATTAGT
*
79380641 AATAATAATAATAATAGAA
1 AATAATAACAATAATA-AA
*
79380660 AATAATAACAATATTAAA
1 AATAATAACAATAATAAA
79380678 AATAA
1 AATAA
79380683 CACTCTCCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (18 bp):
AATAATAACAATAATAAA
Found at i:79381202 original size:16 final size:15
Alignment explanation
Indices: 79381161--79381205 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
79381151 CTTTGGAGGT
** *
79381161 TGTTGGGTTTTGGGC
1 TGTTGGGTTTTTAGA
79381176 TGTTGGGTTTTTAGA
1 TGTTGGGTTTTTAGA
79381191 TGTTGGGCTTTTTAG
1 TGTTGGG-TTTTTAG
79381206 CCCGGGCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 19 0.73
16 7 0.27
ACGTcount: A:0.07, C:0.04, G:0.38, T:0.51
Consensus pattern (15 bp):
TGTTGGGTTTTTAGA
Found at i:79381317 original size:19 final size:19
Alignment explanation
Indices: 79381271--79381318 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
79381261 GTATATATTT
*
79381271 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGAAGA
*
79381289 TAAATCTTATTTAGGAAGA
1 TAAATTTTATTTAGGAAGA
79381308 TAAATTTTATT
1 TAAATTTTATT
79381319 CATATTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.46
Consensus pattern (19 bp):
TAAATTTTATTTAGGAAGA
Found at i:79381607 original size:54 final size:54
Alignment explanation
Indices: 79381525--79381817 Score: 203
Period size: 54 Copynumber: 5.4 Consensus size: 54
79381515 GGAAACTTTC
* * * * *
79381525 ACCTTCTACTTATGAGATTTTACCAATCTCACGGTCCACTGATTTATAATCAGG
1 ACCTTCTACTTACGGGATTTTACAAATCTCACGGTCCATTGATTTACAATCAGG
* ** * * *
79381579 ACCTTCTACTTACGGGGTTTTACAAATCTCACGGTCTGTTGATTTACGATGATG
1 ACCTTCTACTTACGGGATTTTACAAATCTCACGGTCCATTGATTTACAATCAGG
** * ** * *
79381633 ATTTTCTACTTACAGGATTTTACGGATCTCACAGTCCATTGATTTACAATCATG
1 ACCTTCTACTTACGGGATTTTACAAATCTCACGGTCCATTGATTTACAATCAGG
* * ** * ** * * * ***
79381687 ACCTCCTACTTATGACATTTTACGAATCTTGCAGTCCGTTAATTTATGTTC-GTG
1 ACCTTCTACTTACGGGATTTTACAAATCTCACGGTCCATTGATTTACAATCAG-G
* * * * *
79381741 ACCTTCTACTTACGGGATTTTACAAATCTCGCGGTCC-TCTAATTGACATTCATG
1 ACCTTCTACTTACGGGATTTTACAAATCTCACGGTCCAT-TGATTTACAATCAGG
* * *
79381795 ACCTTCTAGTTATGCGATTTTAC
1 ACCTTCTACTTACGGGATTTTAC
79381818 GATTCTAGGC
Statistics
Matches: 184, Mismatches: 52, Indels: 6
0.76 0.21 0.02
Matches are distributed among these distances:
53 1 0.01
54 183 0.99
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.38
Consensus pattern (54 bp):
ACCTTCTACTTACGGGATTTTACAAATCTCACGGTCCATTGATTTACAATCAGG
Found at i:79381732 original size:108 final size:108
Alignment explanation
Indices: 79381525--79381770 Score: 244
Period size: 108 Copynumber: 2.3 Consensus size: 108
79381515 GGAAACTTTC
* * * *
79381525 ACCTTCTACTTA-TGAGATTTTACCAATCTCACGGTCCACTGATTTATAATCAGGACCTTCTACT
1 ACCTTCTACTTACAG-GATTTTACCAATCTCACAGTCCACTGATTTACAATCAGGACCTCCTACT
*** * * *
79381589 TACGGGGTTTTACAAATCTCACGGTCTGTTGATTTACGAT-GATG
65 TACGACATTTTACAAATCTCACAGTCCGTTAATTTACGATCG-TG
** ** * *
79381633 ATTTTCTACTTACAGGATTTTACGGATCTCACAGTCCATTGATTTACAATCATGACCTCCTACTT
1 ACCTTCTACTTACAGGATTTTACCAATCTCACAGTCCACTGATTTACAATCAGGACCTCCTACTT
* * ** * *
79381698 ATGACATTTTACGAATCTTGCAGTCCGTTAATTTATGTTCGTG
66 ACGACATTTTACAAATCTCACAGTCCGTTAATTTACGATCGTG
* *
79381741 ACCTTCTACTTACGGGATTTTACAAATCTC
1 ACCTTCTACTTACAGGATTTTACCAATCTC
79381771 GCGGTCCTCT
Statistics
Matches: 109, Mismatches: 27, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
108 107 0.98
109 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (108 bp):
ACCTTCTACTTACAGGATTTTACCAATCTCACAGTCCACTGATTTACAATCAGGACCTCCTACTT
ACGACATTTTACAAATCTCACAGTCCGTTAATTTACGATCGTG
Found at i:79381965 original size:27 final size:27
Alignment explanation
Indices: 79381934--79381988 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
79381924 CTGACCTTGA
79381934 AAGGAGGATAGAGGAATCAATTTTCTT
1 AAGGAGGATAGAGGAATCAATTTTCTT
79381961 AAGGAGGATAGAGGAATCAATTTTCTT
1 AAGGAGGATAGAGGAATCAATTTTCTT
79381988 A
1 A
79381989 CATTGCCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.29
Consensus pattern (27 bp):
AAGGAGGATAGAGGAATCAATTTTCTT
Found at i:79382295 original size:54 final size:54
Alignment explanation
Indices: 79382207--79382351 Score: 150
Period size: 54 Copynumber: 2.7 Consensus size: 54
79382197 CGTGGTCTAT
** * * * *
79382207 TAATTTACGATGGCGACCTTTTACTTACAGGATTTTTCGAA-TCTCACAATTCGC
1 TAATTTACGATCACGACCTTCTACTTACAGGATTTTAC-AAGTCTCACAATCCAC
* **
79382261 TAATTTACGATCACGACCTTCTACTTA-TGAGATTTTACAAGTCTCACGGTCCAC
1 TAATTTACGATCACGACCTTCTACTTACAG-GATTTTACAAGTCTCACAATCCAC
* * *
79382315 TAATTTACGATCACAATCTTCTACATACAGGATTTTA
1 TAATTTACGATCACGACCTTCTACTTACAGGATTTTA
79382352 AGAACTCATG
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
53 3 0.04
54 71 0.95
55 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (54 bp):
TAATTTACGATCACGACCTTCTACTTACAGGATTTTACAAGTCTCACAATCCAC
Found at i:79382319 original size:108 final size:108
Alignment explanation
Indices: 79382112--79382325 Score: 241
Period size: 108 Copynumber: 2.0 Consensus size: 108
79382102 TTTACAATCA
* * ** * * * *
79382112 CGACCTTTTACTTTCAAGATTTTACGAATTTCACGGTTCGCTAGTTTATGATGAAAACTTTCTAC
1 CGACCTTTTACTTACAAGATTTTACGAATCTCACAATTCGCTAATTTACGATCAAAACCTTCTAC
* ** * *
79382177 TTACGAGATTTAATGAATCTCGTGGTCTATTAATTTACGATGG
66 TTACGAGATTTAATCAATCTCACGGTCCACTAATTTACGATGG
* * **
79382220 CGACCTTTTACTTACAGGATTTTTCGAATCTCACAATTCGCTAATTTACGATCACGACCTTCTAC
1 CGACCTTTTACTTACAAGATTTTACGAATCTCACAATTCGCTAATTTACGATCAAAACCTTCTAC
* *
79382285 TTATGAGATTTTA-CAAGTCTCACGGTCCACTAATTTACGAT
66 TTACGAGATTTAATCAA-TCTCACGGTCCACTAATTTACGAT
79382326 CACAATCTTC
Statistics
Matches: 86, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
107 2 0.02
108 84 0.98
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (108 bp):
CGACCTTTTACTTACAAGATTTTACGAATCTCACAATTCGCTAATTTACGATCAAAACCTTCTAC
TTACGAGATTTAATCAATCTCACGGTCCACTAATTTACGATGG
Found at i:79382393 original size:20 final size:21
Alignment explanation
Indices: 79382357--79382397 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
79382347 TTTTAAGAAC
79382357 TCATGGTCCACTGATTTACGA
1 TCATGGTCCACTGATTTACGA
79382378 TCATGG-CCACCT-ATTTACGA
1 TCATGGTCCA-CTGATTTACGA
79382398 GACCTTACGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (21 bp):
TCATGGTCCACTGATTTACGA
Found at i:79384972 original size:54 final size:54
Alignment explanation
Indices: 79384886--79385114 Score: 189
Period size: 54 Copynumber: 4.3 Consensus size: 54
79384876 TTTACTTACG
* * * * *
79384886 GGATTTTACAAATCTCACAGTCTA-CT-AGTTTATGATGACGACCTTTTACTTATA
1 GGATTTTACGAATCTCACGGTC-AGCTGA-TTTACGATCACGACCTTCTACTTATA
* *
79384940 GGATTTTACGAATCTCATGGTCAGCTGATTTATGATCACGACCTTCTA-TTAT-
1 GGATTTTACGAATCTCACGGTCAGCTGATTTACGATCACGACCTTCTACTTATA
* ** * * * * * *
79384992 -GACTTTTAAGAATCTCGTGGACTGCTGATTTACGACCACAAGCTTCTACTTATG
1 GGA-TTTTACGAATCTCACGGTCAGCTGATTTACGATCACGACCTTCTACTTATA
* * * * * *
79385046 GGGTTTTAAGAATCTCACGGTCCGCTAATTTACGATCACGACCTTCAACTTACA
1 GGATTTTACGAATCTCACGGTCAGCTGATTTACGATCACGACCTTCTACTTATA
*
79385100 TGATTTTACGAATCT
1 GGATTTTACGAATCT
79385115 AGACATGTTG
Statistics
Matches: 141, Mismatches: 28, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
51 2 0.01
52 37 0.26
53 9 0.06
54 91 0.65
55 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (54 bp):
GGATTTTACGAATCTCACGGTCAGCTGATTTACGATCACGACCTTCTACTTATA
Found at i:79385552 original size:54 final size:53
Alignment explanation
Indices: 79385447--79385623 Score: 176
Period size: 54 Copynumber: 3.3 Consensus size: 53
79385437 TTTACTTATG
* * * * *
79385447 GGATTTTATGAGTCTCACAGTCTGCTAATTT-CAGATCATGATCTTCTACTTACA
1 GGATTTTATGAATCTCGCAGTCCG-TAATTTACA-ATCACGACCTTCTACTTACA
* * **
79385501 GGATTTTATGAATCTCGCAGTCCGTTAATTTACAATCACGACCATCCACTTATG
1 GGATTTTATGAATCTCGCAGTCCG-TAATTTACAATCACGACCTTCTACTTACA
* * * *
79385555 GGATTTTATGAATCTTGTAGTCCAGTAATTTACGATCACAACCTTCTACTTACA
1 GGATTTTATGAATCTCGCAGTCC-GTAATTTACAATCACGACCTTCTACTTACA
* *
79385609 TGATTTTACGAATCT
1 GGATTTTATGAATCT
79385624 AGGTGTGTTG
Statistics
Matches: 101, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
54 98 0.97
55 3 0.03
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (53 bp):
GGATTTTATGAATCTCGCAGTCCGTAATTTACAATCACGACCTTCTACTTACA
Found at i:79386454 original size:452 final size:442
Alignment explanation
Indices: 79385582--79386516 Score: 1090
Period size: 452 Copynumber: 2.1 Consensus size: 442
79385572 TAGTCCAGTA
* *
79385582 ATTTACGATCACAACCTTCTACTTACATGATTTTACGAATCTAGGTGTGTTGAGGAATAACTCAA
1 ATTTACGATCACGACCTTCTACTTATATGATTTTACGAATCTAGGTGTGTTGAGGAATAACTCAA
* * ** *
79385647 AATTGACCCTTTTTCCTTTCAAAGCAAATTAGATGCCAGAGATGATGAATATAAGTGTGTTGCTG
66 AATTGACCCTTTTGCCCTTCAAAGCAAATTAGATGCCAGAGATGATGAATATAAGCATGTTGATG
* *
79385712 AAGAACTAATCTTGAAAGAAAAATAGATGTATCAATTTTGTTATATTGCCTTAGGAAGGCTGAAG
131 AAGAACTAATCTTGAAAGAAAAATAGAGGTATAAATTTTGTTATATTGCCTTAGGAAGGCTGAAG
* * ** ** * ** *
79385777 TTAGTTTTATTTACCATGTGTTTGAAATGAGGCTTGAAACAGATAGATTTCCTAAAAAAAGGAAC
196 CTAGTTCTATACACCATACGTATGAAATGAGGCTTGAAACAGATAGATTTCAGAAAAAAAAGAAC
* *
79385842 TTTCCAAAAAACTTTAGCTGATTTACAATCACAACCTTTTACTTTCGGGACTTTATGAATCTCAC
261 TTTCCAAAAAACTTCAGCTGATTTACAATCACAACCTTTTACTTTCGGGACTTTATAAATCTCAC
* * * * *
79385907 AGTCTGTCGATTTTCAATGACGACCTTCAACTTGCGATATTTTACAGATCTCGTGGTCTGATGAT
326 AGTCTCTCGATTTTCAATGACGACCTTCAACTTACGAGATTTTACAGATCTCATGGTCTGATAAT
* * *
79385972 TTATGATAATGACCTTTTACTTACAGGATTTTGTGAATCTCAAGGTTTGCTG
391 TTATGATAATGACCTTTTACTTACAGGATTTTATGAATCTCAAGGTATACTG
*
79386024 ATTTACGATCACGACCTTCTACTTATGTGATTTTACGAATCTAGGTGTGTTGAGGAATAACTCAA
1 ATTTACGATCACGACCTTCTACTTATATGATTTTACGAATCTAGGTGTGTTGAGGAATAACTCAA
* * * * * *
79386089 AATTGA-CCTCTTTGCCCTTCAGAGTAAGTTAGATGCTAGAGGTGATGAATATAGGCATGTTGAT
66 AATTGACCCT-TTTGCCCTTCAAAGCAAATTAGATGCCAGAGATGATGAATATAAGCATGTTGAT
* * * * *
79386153 GAAGAACTTAAACTGACCTTGAAAGGAAGATAGCGGTATAAATTTTGTTCTATTGCCTTTGTG-A
130 GAAGAAC-T-AA-T---CTTGAAAGAAAAATAGAGGTATAAATTTTGTTATATTGCCTTAG-GAA
* ** *
79386217 GGCTGAAGCTAGTTCTCTACACCATACGTATGAAATGAGGCTTGAAGTAGATCGATCTGCTCAGA
188 GGCTGAAGCTAGTTCTATACACCATACGTATGAAATGAGGCTTGAAACAGATAGAT-T--TCAGA
* ** * * *
79386282 AAAATAAAGAGCTTTCTGAAAAACTTCAGTTGATTTACAATCACGATCTTTTACTTTCGGGACTT
250 AAAA-AAAGAACTTTCCAAAAAACTTCAGCTGATTTACAATCACAACCTTTTACTTTCGGGACTT
* * *
79386347 TATAAATTTCACAGTCTACT-GATTTTCAATGATGACCTTCTACTTACGAGATTTTAC-GAATCT
314 TATAAATCTCACAGTCT-CTCGATTTTCAATGACGACCTTCAACTTACGAGATTTTACAG-ATCT
* * ** * * *
79386410 CATGGTCTGCTAATTTATGGT-ATCGATTTTTTACTTATAGGATTTTATTAATCTCACGGTATAC
377 CATGGTCTGATAATTTATGATAAT-GACCTTTTACTTACAGGATTTTATGAATCTCAAGGTATAC
79386474 TG
441 TG
* * * * * *
79386476 ATTTATGATCATGAACTTCTATTTATTTGA-TTTACGGATCT
1 ATTTACGATCACGACCTTCTACTTATATGATTTTACGAATCT
79386517 CACGGTCTGT
Statistics
Matches: 411, Mismatches: 67, Indels: 21
0.82 0.13 0.04
Matches are distributed among these distances:
441 3 0.01
442 118 0.29
443 1 0.00
444 2 0.00
445 1 0.00
448 83 0.20
449 2 0.00
451 20 0.05
452 180 0.44
453 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (442 bp):
ATTTACGATCACGACCTTCTACTTATATGATTTTACGAATCTAGGTGTGTTGAGGAATAACTCAA
AATTGACCCTTTTGCCCTTCAAAGCAAATTAGATGCCAGAGATGATGAATATAAGCATGTTGATG
AAGAACTAATCTTGAAAGAAAAATAGAGGTATAAATTTTGTTATATTGCCTTAGGAAGGCTGAAG
CTAGTTCTATACACCATACGTATGAAATGAGGCTTGAAACAGATAGATTTCAGAAAAAAAAGAAC
TTTCCAAAAAACTTCAGCTGATTTACAATCACAACCTTTTACTTTCGGGACTTTATAAATCTCAC
AGTCTCTCGATTTTCAATGACGACCTTCAACTTACGAGATTTTACAGATCTCATGGTCTGATAAT
TTATGATAATGACCTTTTACTTACAGGATTTTATGAATCTCAAGGTATACTG
Found at i:79387088 original size:54 final size:54
Alignment explanation
Indices: 79386923--79387111 Score: 171
Period size: 54 Copynumber: 3.5 Consensus size: 54
79386913 AAAATTCATT
* * * * * * *
79386923 TGATTTACAATCACGACCTCTTACTTCTGGGACTTTATGAATCTCACAGTCCGT
1 TGATTTACAATAACGACCTTTTACTTATGAGATTTTATGAATCTCACGGTCCGC
* * * * * ** ** *
79386977 TGTTTTTCGATGACGACCTTCTACTTATGAGATTTTACAAATCTCGTGGTCTGC
1 TGATTTACAATAACGACCTTTTACTTATGAGATTTTATGAATCTCACGGTCCGC
* *
79387031 TGATTTACAATAACGACCTTTTACATATGAGATTTTATGAATCTCACGGTCCAC
1 TGATTTACAATAACGACCTTTTACTTATGAGATTTTATGAATCTCACGGTCCGC
** * *
79387085 TGATTTATGATAATGACTTTTTACTTA
1 TGATTTACAATAACGACCTTTTACTTA
79387112 CAGGATTCTA
Statistics
Matches: 102, Mismatches: 33, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
54 102 1.00
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (54 bp):
TGATTTACAATAACGACCTTTTACTTATGAGATTTTATGAATCTCACGGTCCGC
Found at i:79387124 original size:108 final size:108
Alignment explanation
Indices: 79386923--79387128 Score: 236
Period size: 108 Copynumber: 1.9 Consensus size: 108
79386913 AAAATTCATT
* * * * ** *
79386923 TGATTTACAATCACGACCTCTTACTTCTGGGACTTTATGAATCTCACAGTCCGTTGTTTTTCGAT
1 TGATTTACAATAACGACCTCTTACATATGAGACTTTATGAATCTCACAGTCCACTGTTTATCGAT
* * *
79386988 GACGACCTTCTACTTATGAGATTTTACAAATCTCGTGGTCTGC
66 AACGACCTTCTACTTAAGAGATTCTACAAATCTCGTGGTCTGC
* * *
79387031 TGATTTACAATAACGACCTTTTACATATGAGATTTTATGAATCTCACGGTCCACTGATTTAT-GA
1 TGATTTACAATAACGACCTCTTACATATGAGACTTTATGAATCTCACAGTCCACTG-TTTATCGA
* * *
79387095 TAATGACTTTTTACTTACAG-GATTCTACAAATCT
65 TAACGACCTTCTACTTA-AGAGATTCTACAAATCT
79387129 AACGGTACAC
Statistics
Matches: 80, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
108 75 0.94
109 5 0.06
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (108 bp):
TGATTTACAATAACGACCTCTTACATATGAGACTTTATGAATCTCACAGTCCACTGTTTATCGAT
AACGACCTTCTACTTAAGAGATTCTACAAATCTCGTGGTCTGC
Found at i:79387300 original size:54 final size:54
Alignment explanation
Indices: 79387170--79387328 Score: 133
Period size: 54 Copynumber: 3.0 Consensus size: 54
79387160 TATTTATGGG
*** ** *
79387170 GATA-TACAAATCTTATGATCCACTAATTTACGATCAAAACCTTCCT-TTAACAA
1 GATATTACAAATCTTATGATCTGTTAATTTACGATCACGACC-TCCTATTTACAA
** * * *
79387223 GACCTTACAAATCTCACGGTCTGTTAATTTACGATCACGACCTCCTATTTACAA
1 GATATTACAAATCTTATGATCTGTTAATTTACGATCACGACCTCCTATTTACAA
* * * * * * *
79387277 GATATTACAAATCTTTTGATCTGTTGATTCAAGATTACGACCTTCTACTTAC
1 GATATTACAAATCTTATGATCTGTTAATTTACGATCACGACCTCCTATTTAC
79387329 GTGATTTTAC
Statistics
Matches: 81, Mismatches: 23, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
53 6 0.07
54 75 0.93
ACGTcount: A:0.33, C:0.23, G:0.09, T:0.35
Consensus pattern (54 bp):
GATATTACAAATCTTATGATCTGTTAATTTACGATCACGACCTCCTATTTACAA
Found at i:79388520 original size:54 final size:54
Alignment explanation
Indices: 79388462--79388583 Score: 138
Period size: 54 Copynumber: 2.3 Consensus size: 54
79388452 TTCTAGGACA
* * *
79388462 TTACAAATCTCACGGTCCATTGATTT-TCTATGACAACCTTCTACTTACGAGATT
1 TTACAAATCTCACGGTCCATTGATTTAT-GATAACAACCTTCTACTTACAAGATT
* * * ** *
79388516 TTACAAATCTCATGGTCTATTTATTTATGATAACGGCCTTTTACTTACAAGATT
1 TTACAAATCTCACGGTCCATTGATTTATGATAACAACCTTCTACTTACAAGATT
*
79388570 TTACAGATCTCACG
1 TTACAAATCTCACG
79388584 ATTCACTAAT
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
54 55 0.98
55 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.11, T:0.39
Consensus pattern (54 bp):
TTACAAATCTCACGGTCCATTGATTTATGATAACAACCTTCTACTTACAAGATT
Found at i:79388864 original size:54 final size:54
Alignment explanation
Indices: 79388806--79388942 Score: 127
Period size: 54 Copynumber: 2.5 Consensus size: 54
79388796 TTTTATGACA
* * *
79388806 ACCTTCTAAATA-TGAGATTTTACGAATC-CTGTGGTCTACTGATTTACGATAACG
1 ACCTTCTAAATACAG-GATTTTACAAATCTCT-TGGTCCACTGATTTACGATAACG
* ** * *
79388860 ACCTTTTACTTACAGGATTTTACAAATCTCTTGGTCCACTGATTTACGATCATG
1 ACCTTCTAAATACAGGATTTTACAAATCTCTTGGTCCACTGATTTACGATAACG
* **
79388914 ACCTTC-AACTTACTTGATTTTACAAATCT
1 ACCTTCTAA-ATACAGGATTTTACAAATCT
79388943 AGGCATATTG
Statistics
Matches: 68, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
53 1 0.01
54 64 0.94
55 3 0.04
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.38
Consensus pattern (54 bp):
ACCTTCTAAATACAGGATTTTACAAATCTCTTGGTCCACTGATTTACGATAACG
Found at i:79389282 original size:54 final size:54
Alignment explanation
Indices: 79389223--79389437 Score: 178
Period size: 54 Copynumber: 4.0 Consensus size: 54
79389213 TTACTTTCTG
* *
79389223 GATTTTATGAATCTCACGGTCCGCTAATTTACGATCACGACCTTCTACTTACAA
1 GATTTTATAAATCTCACGGTCCGCTAATTTACGATCATGACCTTCTACTTACAA
* * ** * ** * * *
79389277 GATTTTATGAATCTCACGATTTGATAATTTTAAAATCATAATCTTCTACTAACAA
1 GATTTTATAAATCTCACGGTCCGCTAA-TTTACGATCATGACCTTCTACTTACAA
* * * * * * ***
79389332 GATTTTACAAATCGCACAGTCCACTGATTTACGATCATGACCTTCTACCTATGG
1 GATTTTATAAATCTCACGGTCCGCTAATTTACGATCATGACCTTCTACTTACAA
** ** * *
79389386 GATTTTATAAATCTCGTGGTTTGCTGATTTACGATCATGACCTTCTAGTTAC
1 GATTTTATAAATCTCACGGTCCGCTAATTTACGATCATGACCTTCTACTTAC
79389438 GTGCTTTTAC
Statistics
Matches: 120, Mismatches: 40, Indels: 2
0.74 0.25 0.01
Matches are distributed among these distances:
54 82 0.68
55 38 0.32
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (54 bp):
GATTTTATAAATCTCACGGTCCGCTAATTTACGATCATGACCTTCTACTTACAA
Found at i:79390345 original size:55 final size:53
Alignment explanation
Indices: 79390264--79390400 Score: 132
Period size: 55 Copynumber: 2.5 Consensus size: 53
79390254 TTGATTTATG
* * * * *
79390264 ATCACGACCTTCTACTTAC-GAGATTTTACGAATCTCGTGATTTGCTAATTTTAAA
1 ATCATGACCTTCTAC-TACAG-GATTTTACAAATATCGCGATCTGCTAA-TTTAAA
* * **
79390319 ATCATGATCTTCTACTAACAGGATTTTACAAATATCGCGGTCTGCTAATTTACG
1 ATCATGACCTTCTACT-ACAGGATTTTACAAATATCGCGATCTGCTAATTTAAA
*
79390373 ATCATTACCTTCTACCTACAGGATTTTA
1 ATCATGACCTTCTA-CTACAGGATTTTA
79390401 TAAACCTTGC
Statistics
Matches: 68, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
54 28 0.41
55 39 0.57
56 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.37
Consensus pattern (53 bp):
ATCATGACCTTCTACTACAGGATTTTACAAATATCGCGATCTGCTAATTTAAA
Found at i:79390394 original size:54 final size:55
Alignment explanation
Indices: 79390327--79390441 Score: 144
Period size: 54 Copynumber: 2.1 Consensus size: 55
79390317 AAATCATGAT
* * **
79390327 CTTCTA-CTAACAGGATTTTACAAATATCGCGGTCTGCTAATTTACGATCATTAC
1 CTTCTACCTAACAGGATTTTACAAACATCGCAGTCTGCTAATTTACGATCACAAC
* * * *
79390381 CTTCTACCT-ACAGGATTTTATAAACCTTGCAGTCTGCTTATTTACGATCACAAC
1 CTTCTACCTAACAGGATTTTACAAACATCGCAGTCTGCTAATTTACGATCACAAC
79390435 CTTCTAC
1 CTTCTAC
79390442 TTACGTGCTT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 50 0.96
55 2 0.04
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.36
Consensus pattern (55 bp):
CTTCTACCTAACAGGATTTTACAAACATCGCAGTCTGCTAATTTACGATCACAAC
Found at i:79390485 original size:511 final size:504
Alignment explanation
Indices: 79388838--79390807 Score: 1707
Period size: 511 Copynumber: 3.9 Consensus size: 504
79388828 CGAATCCTGT
* * * * * * ** *
79388838 GGTCTACTGATTTACGATAACGACCTTTTACTTACAGGATTTTACAAATCTCTTG--GTCCACTG
1 GGTCTACTGATTTACGATCATGACCTTCTACCTATAGGATTTTATAAA--TCTTGCAGT-TGCTT
* * * * *
79388901 ATTTACGATCATGACCTTCAACTTACTTGATTTTACAAATCTAGGCATATTGAGGAATAACTCAT
63 ATTTACGATCACGACCTTCAACTTACGTGCTTTTACAAATCTAGGCATGTTGAGGAATAACTCAA
* * * * * *
79388966 AATTGACATTTCTACCCTTTAGAGCAAGTTAGAAGCTAGAGCTGATGAATATAGGCGTGTT-AAG
128 AACTGACCTTT-TACCCTTCAGAGCAAGTTAGAAGCTAGAGATGATGAATATAGGCATGTTGAGG
* * *
79389030 AAGAACTCAAAATTAACCTTGAAAGATGGAGGATAGAAGAATCAATTTTGTTACATTTTCTTTGT
192 AAGAACTC-AAACTAACCTTGAAA-A--GAGGATAGAGGAATCAATTTTGTTACATTGTCTTTGT
* ** * * * * *
79389095 GAGGTTGGAGCTAGTTTTCAATACCATACATTTGAAATGAGGCTTCAAATAAATCAATCTACTAA
253 GAGGCTAAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATAGATCAATCTACTTA
* * * ** *
79389160 GAAAAACGAGAAACTTTCT-CAAAACATTTAGTTTTTTTTTAAATCATGACATTTTACTTTCTGG
318 GAAAAACAAGAAACTTTCTGAAAAAC-TTTAATTGATTTAT-AATCATGACATTTTACTTTCTGG
* * * * * * *
79389224 ATTTTATGAATCTCACGGTCCGCTAATTTACGATCACGACCTTCTACTTACAAGATTTTATGAAT
381 ATTATACGAATCTCACGGTCCGCTGATTTATGATCACAACCTTCTACTTACGAGATTTTACGAAT
** * * *
79389289 CTCACGATTTGATAATTTTAAAATCATAATCTTCTACTAACAAGATTTTACAAATCGCAC
446 CTCGTGATTTGATAATTTTAAAATCATGATCTTCTACTAACAGGATTTTACAAATCTC-C
* * * * ** *
79389349 AGTCCACTGATTTACGATCATGACCTTCTACCTATGGGATTTTATAAATCTCGTGGTTTGCTGAT
1 GGTCTACTGATTTACGATCATGACCTTCTACCTATAGGATTTTATAAATCTTGCAG-TTGCTTAT
* * * * *
79389414 TTACGATCATGACCTTCTAGTTACGTGCTTTTACAAATCTAGGCGTGTTGAGGAAGAACTCAAAA
65 TTACGATCACGACCTTCAACTTACGTGCTTTTACAAATCTAGGCATGTTGAGGAATAACTCAAAA
* ** * * *
79389479 CTGACGTCTTTT-CCCTTCAGAGCAAGCTAGATTCTAAAGATGATGAATATAGGCATGCTAAGGA
130 CTGAC--CTTTTACCCTTCAGAGCAAGTTAGAAGCTAGAGATGATGAATATAGGCATGTTGAGGA
* * * * * *
79389543 AGAACTCAAACTAACCTTGAAAAGAGGATAGAGGTATCAATTTTGTTATATTGCCTTTATAATGC
193 AGAACTCAAACTAACCTTGAAAAGAGGATAGAGGAATCAATTTTGTTACATTGTCTTTGTGAGGC
* * ** * * * * ** *
79389608 T-GAGTTAGTTCTCTTCTCCAAACGTCTGAAATGAGGCTTGAAAT-GCATTGATCTGCTTAGAAA
258 TAAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATAG-ATCAATCTACTTAGAAA
* * * *
79389671 AACAAGAAACTTTATGAAAAACTTT-A--G---T-T-ATCATGACCTTTTAC-TTCTGGGTCTAA
322 AACAAGAAACTTTCTGAAAAACTTTAATTGATTTATAATCATGACATTTTACTTTCTGGAT-TAT
* * ** * * * * ** *
79389727 ACAAATCTCATGGTCTACTGATTTTTTATGACAACCTTCAAAATATGAGATTTTACGAATCTCGT
386 ACGAATCTCACGGTCCGCTGATTTATGATCACAACCTTCTACTTACGAGATTTTACGAATCTCGT
* * * * ** * * * * *
79389792 GGTCTGGTGA-TTTACGATAATGA-CTTTTTATTTAC-GAGATTTTACGAATCTCC
451 GATTTGATAATTTTAAAATCATGATC-TTCTACTAACAG-GATTTTACAAATCTCC
* * * * * *
79389845 TGGT-TCACTGATTTATGATCACGACCATT-TACTTATAGGATTTCATGAATCTT-CTA-TTTCA
1 -GGTCT-ACTGATTTACGATCATGACC-TTCTACCTATAGGATTTTATAAATCTTGC-AGTTGC-
* * * *
79389906 TTGATTTACGATCACGACCTTCAACTTA-GTTGGTTATACGAATCTAGGCATGTTGAGGAATGAC
61 TT-ATTTACGATCACGACCTTCAACTTACG-TGCTTTTACAAATCTAGGCATGTTGAGGAATAAC
** *
79389970 TCAAAACTGACCTTTCTACTATTCAGAGCAAGTTAAAAGCTAGAGATGATGAATATAGGCATGTT
124 TCAAAACTGACCTTT-TACCCTTCAGAGCAAGTTAGAAGCTAGAGATGATGAATATAGGCATGTT
* * *
79390035 GAGGAAGAACTCAAAATTGACCTTGAAAGAAGGAGGATAGAGGAATAAATTTTGTTACATTGTCT
188 GAGGAAGAACTC-AAACTAACCTTG-AA-AA-GAGGATAGAGGAATCAATTTTGTTACATTGTCT
* * * *
79390100 TTGTGAGGCTAAAGCTAGTTCTCAACACCATACATTTGAAATGAGGTTTGTAATGGATCAATCTG
249 TTGTGAGGCTAAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATAGATCAATCTA
* * * *
79390165 CTCAGAAGAACAATGAAA-TTTCT-TAAAAGTTTCAATTGATTTATAATCATGACATTTTACTTT
314 CTTAGAAAAACAA-GAAACTTTCTGAAAAACTTT-AATTGATTTATAATCATGACATTTTACTTT
* * ** * *
79390228 TTGGATTTTACGAATCTTGCGGTCCGTTGATTTATGATCACGACCTTCTACTTACGAGATTTTAC
377 CTGGATTATACGAATCTCACGGTCCGCTGATTTATGATCACAACCTTCTACTTACGAGATTTTAC
* *
79390293 GAATCTCGTGATTTGCTAATTTTAAAATCATGATCTTCTACTAACAGGATTTTACAAATATCGC
442 GAATCTCGTGATTTGATAATTTTAAAATCATGATCTTCTACTAACAGGATTTTACAAATCTC-C
* * * * *
79390357 GGTCTGCTAATTTACGATCATTACCTTCTACCTACAGGATTTTATAAACCTTGCAGTCTGCTTAT
1 GGTCTACTGATTTACGATCATGACCTTCTACCTATAGGATTTTATAAATCTTGCAGT-TGCTTAT
* * * ** *
79390422 TTACGATCACAACCTTCTACTTACGTGCTTTTACGAATCTAGGTGTGTTAAGGAATAACTCAAAA
65 TTACGATCACGACCTTCAACTTACGTGCTTTTACAAATCTAGGCATGTTGAGGAATAACTCAAAA
* * * * * * *
79390487 CTGACCCCTTTGCCCTTCAAAGCAAGTT-GATTA-CTAGAGATAATGGATATAAGCGTGTTGAGG
130 CTGA-CCTTTTACCCTTCAGAGCAAGTTAGA--AGCTAGAGATGATGAATATAGGCATGTTGAGG
* * *
79390550 AAGAACTCAAACTAACCCTGAAAAGAGGATAGAGGTATATCGATTTTGTTAAATTGT-TTTGTGA
192 AAGAACTCAAACTAACCTTGAAAAGAGGATAGAGG-A-ATCAATTTTGTTACATTGTCTTTGTGA
** *
79390614 GTATGAAA-CTAGTTCTCAACACCATACATATGAAATGAGGCTTGAAATAGATCGAA-CTACTTA
255 GGCT-AAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATAGATC-AATCTACTTA
* * * * * * * * *
79390677 GAAAAATAAGGAACTTTCTGAAAAACTTTAGTTGATTTATGATCACGACCTTTTACTTCCAGGAC
318 GAAAAACAAGAAACTTTCTGAAAAACTTTAATTGATTTATAATCATGACATTTTACTTTCTGGAT
* * * * * * * *
79390742 TATACGAATTTCATGGTTCGTTGATTTTTAATGACAACCTTTTACTTACGAGATTTTACGAATCT
383 TATACGAATCTCACGGTCCGCTGATTTATGATCACAACCTTCTACTTACGAGATTTTACGAATCT
79390807 C
448 C
79390808 ACGATCTACT
Statistics
Matches: 1149, Mismatches: 254, Indels: 115
0.76 0.17 0.08
Matches are distributed among these distances:
495 7 0.01
496 5 0.00
497 186 0.16
498 79 0.07
499 2 0.00
500 3 0.00
501 44 0.04
502 55 0.05
503 6 0.01
505 1 0.00
507 76 0.07
508 193 0.17
509 35 0.03
510 84 0.07
511 342 0.30
512 26 0.02
513 5 0.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (504 bp):
GGTCTACTGATTTACGATCATGACCTTCTACCTATAGGATTTTATAAATCTTGCAGTTGCTTATT
TACGATCACGACCTTCAACTTACGTGCTTTTACAAATCTAGGCATGTTGAGGAATAACTCAAAAC
TGACCTTTTACCCTTCAGAGCAAGTTAGAAGCTAGAGATGATGAATATAGGCATGTTGAGGAAGA
ACTCAAACTAACCTTGAAAAGAGGATAGAGGAATCAATTTTGTTACATTGTCTTTGTGAGGCTAA
AGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATAGATCAATCTACTTAGAAAAACA
AGAAACTTTCTGAAAAACTTTAATTGATTTATAATCATGACATTTTACTTTCTGGATTATACGAA
TCTCACGGTCCGCTGATTTATGATCACAACCTTCTACTTACGAGATTTTACGAATCTCGTGATTT
GATAATTTTAAAATCATGATCTTCTACTAACAGGATTTTACAAATCTCC
Found at i:79390890 original size:54 final size:54
Alignment explanation
Indices: 79390763--79390897 Score: 135
Period size: 54 Copynumber: 2.5 Consensus size: 54
79390753 CATGGTTCGT
* * * *
79390763 TGATTTTTAATGACAACCTTTTACTTACGAGATTTTACGAATCTCACGATCTAC
1 TGATTTTTAATAACAACCTTTTATTTACGAGATTTTACGAATCTCACAATCCAC
* ** * * * *
79390817 TAATTGATGATAACAACCTTTTATTTACGGGATTTTATGAATCTCACAATCCGC
1 TGATTTTTAATAACAACCTTTTATTTACGAGATTTTACGAATCTCACAATCCAC
* * * *
79390871 TGATTTTTTATCACGACCTTCTATTTA
1 TGATTTTTAATAACAACCTTTTATTTA
79390898 TGTGATTTAC
Statistics
Matches: 63, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
54 63 1.00
ACGTcount: A:0.29, C:0.19, G:0.11, T:0.41
Consensus pattern (54 bp):
TGATTTTTAATAACAACCTTTTATTTACGAGATTTTACGAATCTCACAATCCAC
Found at i:79390972 original size:54 final size:54
Alignment explanation
Indices: 79390902--79391051 Score: 158
Period size: 54 Copynumber: 2.8 Consensus size: 54
79390892 TATTTATGTG
* * * *
79390902 ATTTACAATCACAACCTTTTACTTACGGGATTTTATGAATCTCGTGATCCGCTA
1 ATTTAAAATAACAACCTTCTACTTACGGGATTTTATGAATCTCGCGATCCGCTA
* * * * *
79390956 ATTTAAAATAATAACCTTCTACTTACAGGGA-TTTATGAATTTCGCGGTCTGTTA
1 ATTTAAAATAACAACCTTCTACTTAC-GGGATTTTATGAATCTCGCGATCCGCTA
* * * * *
79391010 ATTTATAATCACAACCTTCTAATTACGTGATTTTACGAATCT
1 ATTTAAAATAACAACCTTCTACTTACGGGATTTTATGAATCT
79391052 AGGCATGTTG
Statistics
Matches: 78, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
53 3 0.04
54 71 0.91
55 4 0.05
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.39
Consensus pattern (54 bp):
ATTTAAAATAACAACCTTCTACTTACGGGATTTTATGAATCTCGCGATCCGCTA
Found at i:79391021 original size:137 final size:137
Alignment explanation
Indices: 79390775--79391042 Score: 304
Period size: 137 Copynumber: 2.0 Consensus size: 137
79390765 ATTTTTAATG
* ** *
79390775 ACAACCTTTTACTTACGAGATTTTACGAATCTCACGATCTACTAATTGATGATAACAACCTTTTA
1 ACAACCTTTTACTTACGAGATTTTACGAATCTCACGATCCACTAATTGAAAATAACAACCTTCTA
* * * * * * *
79390840 TTTACGGGATTTTATGAATCTCACAATCCGCTGATTTTTTATCACGACCTTCTATTTATGTGATT
66 CTTACGGGATTTTATGAATCTCACAATCCGCTAATTTATAATCACAACCTTCTAATTACGTGATT
79390905 TACAATC
131 TACAATC
* * ** * * *
79390912 ACAACCTTTTACTTACGGGATTTTATGAATCTCGTGATCCGCTAATTTAAAATAATAACCTTCTA
1 ACAACCTTTTACTTACGAGATTTTACGAATCTCACGATCCACTAATTGAAAATAACAACCTTCTA
* * ** * *
79390977 CTTACAGGGA-TTTATGAATTTCGCGGTCTGTTAATTTATAATCACAACCTTCTAATTACGTGAT
66 CTTAC-GGGATTTTATGAATCTCACAATCCGCTAATTTATAATCACAACCTTCTAATTACGTGAT
79391041 TT
130 TT
79391043 TACGAATCTA
Statistics
Matches: 106, Mismatches: 24, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
137 102 0.96
138 4 0.04
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.39
Consensus pattern (137 bp):
ACAACCTTTTACTTACGAGATTTTACGAATCTCACGATCCACTAATTGAAAATAACAACCTTCTA
CTTACGGGATTTTATGAATCTCACAATCCGCTAATTTATAATCACAACCTTCTAATTACGTGATT
TACAATC
Found at i:79391562 original size:108 final size:109
Alignment explanation
Indices: 79391428--79391663 Score: 234
Period size: 108 Copynumber: 2.2 Consensus size: 109
79391418 TGAATCTTAG
* * * *
79391428 GGTTCGCTGATTTATGGT-AACAACCTT-TTATTTAC-GGAAT-TCAACGAATCTCATGGGATGT
1 GGTTCGCTGATTTACGATCAACAACCTTCTT-TTTACAAG-ATCT-AACGAATCTCATAGGATGT
* ** *
79391489 TGATTTACGATCACGACCTTTTACTTATGGGGATA-TACAAATCTCGC
63 TAATTTACGATCACGACCTCCTACTTA-CGGGATATTACAAATCTCGC
* * **
79391536 GGTTCGCTGATTTACGATCAA-GACCTTCTTTTTACAAGATCTTACGAATCTCATAGTCTGTTAA
1 GGTTCGCTGATTTACGATCAACAACCTTCTTTTTACAAGATCTAACGAATCTCATAGGATGTTAA
* * *
79391600 TTTACGATCATGACCTCCTATTTACGGGATATTACTAATCTCGC
66 TTTACGATCACGACCTCCTACTTACGGGATATTACAAATCTCGC
*
79391644 -GATCTGCTGATTTACGATCA
1 GGTTC-GCTGATTTACGATCA
79391664 CATCCTTTTA
Statistics
Matches: 106, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
107 9 0.08
108 91 0.86
109 6 0.06
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.36
Consensus pattern (109 bp):
GGTTCGCTGATTTACGATCAACAACCTTCTTTTTACAAGATCTAACGAATCTCATAGGATGTTAA
TTTACGATCACGACCTCCTACTTACGGGATATTACAAATCTCGC
Found at i:79391586 original size:54 final size:53
Alignment explanation
Indices: 79391520--79391663 Score: 130
Period size: 54 Copynumber: 2.7 Consensus size: 53
79391510 TACTTATGGG
* * *
79391520 GATA-TACAAATCTCGCGGT-TCGCTGATTTACGATCAAGACCTTCTTTTTACAA
1 GATATTACGAATCTCGC-GTCT-GCTGATTTACGATCAAGACCTCCTATTTACAA
* ** * * * **
79391573 GATCTTACGAATCTCATAGTCTGTTAATTTACGATCATGACCTCCTATTTACGG
1 GATATTACGAATCTC-GCGTCTGCTGATTTACGATCAAGACCTCCTATTTACAA
*
79391627 GATATTACTAATCTCGCGATCTGCTGATTTACGATCA
1 GATATTACGAATCTCGCG-TCTGCTGATTTACGATCA
79391664 CATCCTTTTA
Statistics
Matches: 70, Mismatches: 17, Indels: 7
0.74 0.18 0.07
Matches are distributed among these distances:
53 4 0.06
54 65 0.93
55 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.35
Consensus pattern (53 bp):
GATATTACGAATCTCGCGTCTGCTGATTTACGATCAAGACCTCCTATTTACAA
Found at i:79392102 original size:53 final size:54
Alignment explanation
Indices: 79392001--79392102 Score: 127
Period size: 54 Copynumber: 1.9 Consensus size: 54
79391991 CGATCTGCCA
* * * * *
79392001 ATTTATGATGACGACCTTTTACTTATGCGATTTTACGAATCACATGGTCCACAG
1 ATTTACGATAACGACCTTCTAATAATGCGATTTTACGAATCACATGGTCCACAG
*
79392055 ATTTACGATAACGACCTTCTAATAATG-GATTTTATGAAT-ACAATGGTC
1 ATTTACGATAACGACCTTCTAATAATGCGATTTTACGAATCAC-ATGGTC
79392103 ATTAATTTAC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
52 2 0.05
53 17 0.41
54 22 0.54
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (54 bp):
ATTTACGATAACGACCTTCTAATAATGCGATTTTACGAATCACATGGTCCACAG
Found at i:79392785 original size:243 final size:243
Alignment explanation
Indices: 79392352--79392840 Score: 542
Period size: 243 Copynumber: 2.0 Consensus size: 243
79392342 TTACATTGCC
** *
79392352 TTTGTGAGGCTGAAGCTAGTTCTCATCTTCACACATCTGAAATAAGGCTTCAAATTGATCAATCT
1 TTTGTGAGGCTGAAGCTAGTTCTCATCACCACACATCTGAAATAAGGCTTCAAATGGATCAATCT
* * * *
79392417 GTTCAAAAAAATAAGGAACTTTTTAAAAAGTTTCAGTTTATTTACAATCATGACCTTTTACTTTC
66 CTTCAAAAAAATAAGGAACTTTCTAAAAAGTTTCAGTTGATTTACAATCACGACCTTTTACTTTC
* * * * ** * * * * *
79392482 TGGATTTTAAGAATCTCAGGGTTCGTTGATTTACAATCATGATCTTTTACATATGAGATTTCACA
131 GGGATTTTAAGAACCTCACGGTCCACTAATTTACAATCATAACCTTGTACATAAGAGATTTCACA
* * * *
79392547 AATCT-CTCAGTTTGCTGATTTACGATGATGATCA-TTTACTTACAGGAT
196 AATCTACT-AGTCTACTAATTTACGATAATGA-CATTTTACTTACAGGAT
* * * * *
79392595 TTTGTGAGGCTGAAGCTATTTCTCCTCACCATACATCTGAAATGAGGCTTGAAATGGATCAATCT
1 TTTGTGAGGCTGAAGCTAGTTCTCATCACCACACATCTGAAATAAGGCTTCAAATGGATCAATCT
*
79392660 ACTT-AAAAAAATAAGGAACTTTCTAAAGAGCTTT-AGTTGATTTAC-ATACACGACCTTTTACT
66 -CTTCAAAAAAATAAGGAACTTTCTAAAAAG-TTTCAGTTGATTTACAAT-CACGACCTTTTACT
* ** **
79392722 TAT-GGGATTTTACA-AACCTTACGGTCCACTAATTTACTGTCATAACCTTGTATTTAAGAGATT
128 T-TCGGGATTTTA-AGAACCTCACGGTCCACTAATTTACAATCATAACCTTGTACATAAGAGATT
* * *
79392785 TCACGAATCTAGTAGTCTACTAATTTACGATAATGACATTTTACTTACGGGAT
191 TCACAAATCTACTAGTCTACTAATTTACGATAATGACATTTTACTTACAGGAT
79392838 TTT
1 TTT
79392841 ACAAATATCA
Statistics
Matches: 203, Mismatches: 36, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
242 4 0.02
243 191 0.94
244 8 0.04
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (243 bp):
TTTGTGAGGCTGAAGCTAGTTCTCATCACCACACATCTGAAATAAGGCTTCAAATGGATCAATCT
CTTCAAAAAAATAAGGAACTTTCTAAAAAGTTTCAGTTGATTTACAATCACGACCTTTTACTTTC
GGGATTTTAAGAACCTCACGGTCCACTAATTTACAATCATAACCTTGTACATAAGAGATTTCACA
AATCTACTAGTCTACTAATTTACGATAATGACATTTTACTTACAGGAT
Found at i:79392920 original size:24 final size:24
Alignment explanation
Indices: 79392883--79392946 Score: 92
Period size: 24 Copynumber: 2.6 Consensus size: 24
79392873 AACCTTCTTC
79392883 TTATTAGATTTTATGAATCTCACAGT
1 TTATT-GA-TTTATGAATCTCACAGT
79392909 TTATTGATTTATGAATCTCACAGT
1 TTATTGATTTATGAATCTCACAGT
**
79392933 CCATTGATTTATGA
1 TTATTGATTTATGA
79392947 TAACGACCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 29 0.81
25 2 0.06
26 5 0.14
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (24 bp):
TTATTGATTTATGAATCTCACAGT
Found at i:79393081 original size:54 final size:54
Alignment explanation
Indices: 79392949--79393081 Score: 122
Period size: 54 Copynumber: 2.5 Consensus size: 54
79392939 ATTTATGATA
* * * * * ** **
79392949 ACGACCTTCTACTAACGGGATTTTATGAATCTTTTAATCTGTTAATTTACTATC
1 ACGACCTTCTACTTACGAGATTTTAAGAAACTTGTAATCTACTAATTTAAAATC
* * * * **
79393003 ATGACCTTCTACCTAAGAGTTTTTAAGAAACTTGTGGTCTACTAATTTAAAATC
1 ACGACCTTCTACTTACGAGATTTTAAGAAACTTGTAATCTACTAATTTAAAATC
*
79393057 ACGACCTTCTACTTACGTGATTTTA
1 ACGACCTTCTACTTACGAGATTTTA
79393082 CAAATCTAGG
Statistics
Matches: 59, Mismatches: 20, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.40
Consensus pattern (54 bp):
ACGACCTTCTACTTACGAGATTTTAAGAAACTTGTAATCTACTAATTTAAAATC
Found at i:79393441 original size:54 final size:54
Alignment explanation
Indices: 79393349--79393558 Score: 161
Period size: 54 Copynumber: 3.9 Consensus size: 54
79393339 GCACGGTCCT
* *
79393349 CTAATTTACGATGATGACCTTTTACTTACAAGG-TTTTATGAATCTCGCGGTCAG
1 CTAATTTACGATCATGACCTTTTACTTA-TAGGATTTTATGAATCTCGCGGTCAG
* * * * * * * * *
79393403 CTCATTTACAATTATGACCTTTTACTTATGGGACTTTATAAATCTCACGATCTG
1 CTAATTTACGATCATGACCTTTTACTTATAGGATTTTATGAATCTCGCGGTCAG
* * * * * *
79393457 CTAATTTATGGATCATGACCTTTTACTTTTTGGATTTTACGAATATCGCGGTCCG
1 CTAATTTA-CGATCATGACCTTTTACTTATAGGATTTTATGAATCTCGCGGTCAG
* * ** * * * * *
79393512 CTGATTTATGATCACAACCTTCTAATTACATGATTTTACGAATCTCG
1 CTAATTTACGATCATGACCTTTTACTTATAGGATTTTATGAATCTCG
79393559 TGTTCCGTTG
Statistics
Matches: 120, Mismatches: 34, Indels: 4
0.76 0.22 0.03
Matches are distributed among these distances:
53 2 0.02
54 77 0.64
55 41 0.34
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.40
Consensus pattern (54 bp):
CTAATTTACGATCATGACCTTTTACTTATAGGATTTTATGAATCTCGCGGTCAG
Found at i:79393571 original size:54 final size:54
Alignment explanation
Indices: 79393489--79393664 Score: 151
Period size: 54 Copynumber: 3.3 Consensus size: 54
79393479 TTACTTTTTG
* * * * *
79393489 GATTTTACGAATATCGCGGTCCGCTGATTTATGATCACAACCTTCTAATTACAT
1 GATTTTACGAATCTCGTGTTCCGTTGATTTACGATCACAACCTTCTAATTACAT
* ** * *
79393543 GATTTTACGAATCTCGTGTTCCGTTGATTTACAAT-ATTGACCTTCTAGTTACAA
1 GATTTTACGAATCTCGTGTTCCGTTGATTTACGATCA-CAACCTTCTAATTACAT
* * * * *
79393597 GATTTTACAAATCACGTGGTT-CATTGATTTACGATCACGAA-CTTCTACTTACGT
1 GATTTTACGAATCTCGT-GTTCCGTTGATTTACGATCAC-AACCTTCTAATTACAT
* *
79393651 TACTTTACGAATCT
1 GATTTTACGAATCT
79393665 AAAAGTGTTG
Statistics
Matches: 95, Mismatches: 23, Indels: 8
0.75 0.18 0.06
Matches are distributed among these distances:
53 1 0.01
54 89 0.94
55 5 0.05
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.38
Consensus pattern (54 bp):
GATTTTACGAATCTCGTGTTCCGTTGATTTACGATCACAACCTTCTAATTACAT
Found at i:79397935 original size:214 final size:213
Alignment explanation
Indices: 79397535--79397963 Score: 707
Period size: 214 Copynumber: 2.0 Consensus size: 213
79397525 GGGCCGTATG
* * *
79397535 TCTGTTACGGAATACGAACGAGAATTTGTTAAATTAAGTCAATATGCATGAGAATGTGTTTCGAC
1 TCTGTTACAGAATACGAACGAGAATTTGTTAAATTAAGTCAATATGCACGAGAATGTGCTTCGAC
* *
79397600 TAAAGCTATAATGTGTAAGATATTTGAATATGGTTGAATGAAGATATTCGATTGTTAGTTGGAAT
66 TAAAGCTATAATGTGTAAGATATTTAAAGATGGTTGAATGAAGATATTCGATTGTTAGTTGGAAT
*
79397665 TCTGGAAATCAAAAAGTTTGTGGTACTCGTCGAGCAAGCAAGTAAAGCTGAAGAACTCGGGAAAG
131 TCTAGAAATCAAAAAGTTTGTGGTACTCGTCGAGCAAGCAAGTAAAGCTGAAGAACTCGGGAAA-
79397730 A-GAAAAGAAAAGCGGATT
195 ATGAAAAGAAAAGCGGATT
* *
79397748 TCTGTTACAGAATATGAACGAGAATTTGTTAAATTAAGTTAATATGCACGAGAATGTGCTTCGAC
1 TCTGTTACAGAATACGAACGAGAATTTGTTAAATTAAGTCAATATGCACGAGAATGTGCTTCGAC
* *
79397813 TGAAGCTATAATGTGTAAGATATTTAAAGATGGCTTGAATGAAGATATTCGGTTGTTAGTTGGAA
66 TAAAGCTATAATGTGTAAGATATTTAAAGATGG-TTGAATGAAGATATTCGATTGTTAGTTGGAA
* * * *
79397878 TTCTAGAAATCAAAGAGTTTGTGGTTCTCGTCGAGCGAGCATGTAAAGCTGAAGAACTCGGGAAA
130 TTCTAGAAATCAAAAAGTTTGTGGTACTCGTCGAGCAAGCAAGTAAAGCTGAAGAACTCGGGAAA
79397943 ATGAAAAGAAAAGCGGATT
195 ATGAAAAGAAAAGCGGATT
79397962 TC
1 TC
79397964 GAAGCTAGAG
Statistics
Matches: 200, Mismatches: 14, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
213 91 0.46
214 109 0.55
ACGTcount: A:0.36, C:0.10, G:0.24, T:0.29
Consensus pattern (213 bp):
TCTGTTACAGAATACGAACGAGAATTTGTTAAATTAAGTCAATATGCACGAGAATGTGCTTCGAC
TAAAGCTATAATGTGTAAGATATTTAAAGATGGTTGAATGAAGATATTCGATTGTTAGTTGGAAT
TCTAGAAATCAAAAAGTTTGTGGTACTCGTCGAGCAAGCAAGTAAAGCTGAAGAACTCGGGAAAA
TGAAAAGAAAAGCGGATT
Found at i:79400818 original size:119 final size:120
Alignment explanation
Indices: 79400642--79400862 Score: 306
Period size: 119 Copynumber: 1.9 Consensus size: 120
79400632 TACTCGTTCA
* * *
79400642 AATGCCTTCGGGACATAGCCCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
79400707 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACC
* *
79400762 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
* * *
79400824 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCG
79400863 GACATCATTC
Statistics
Matches: 89, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACC
Found at i:79400848 original size:79 final size:80
Alignment explanation
Indices: 79400640--79400864 Score: 251
Period size: 79 Copynumber: 2.8 Consensus size: 80
79400630 GCTACTCGTT
* * ** * *
79400640 CAAATGCCTTCGGGACATAGCCCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGAATATAGTAACTAGCACAAA-GCCTTCGGGACTTAGCCCGG
*
79400705 -TTATAGTAACTCGCA
65 AATATAGTAACTCGCA
* * *
79400720 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGAATATAGTAACTAGCA-CAAAGCCTTCGGGACTTAGCCCGG
79400784 AAT-TAGTAACTCGCA
65 AATATAGTAACTCGCA
** * * *
79400799 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAACCCGAATATAGTAAC-TAGCACAAAGCCTTCGGGACTTAGCCCG
79400863 GA
64 GA
79400865 CATCATTCAA
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
78 3 0.02
79 59 0.48
80 59 0.48
81 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAACCCGAATATAGTAACTAGCACAAAGCCTTCGGGACTTAGCCCGGA
ATATAGTAACTCGCA
Found at i:79400864 original size:40 final size:40
Alignment explanation
Indices: 79400621--79400864 Score: 291
Period size: 40 Copynumber: 6.1 Consensus size: 40
79400611 CGGAATTTAA
** *
79400621 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
79400661 CCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
79400701 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
79400741 CCGAATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
79400780 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
79400820 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
79400860 CCGGA
1 CCGGA
79400865 CATCATTCAA
Statistics
Matches: 178, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 32 0.18
40 132 0.74
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:79403761 original size:54 final size:54
Alignment explanation
Indices: 79403649--79403770 Score: 127
Period size: 54 Copynumber: 2.3 Consensus size: 54
79403639 CAACACACCT
* *
79403649 AGATTCGTAAAATCACATAAGTTGAAGGTCATGAACGAAAATCAACAGACAGCA
1 AGATTCGTAAAATCACATAAGTAGAAGGTCATGAACGAAAATCAACAAACAGCA
* * * * * ** * **
79403703 AGATTTGTAAAATCCCATTAGTAGAAGGTCGTGATCTTAAATCAACAAACTGGG
1 AGATTCGTAAAATCACATAAGTAGAAGGTCATGAACGAAAATCAACAAACAGCA
*
79403757 AGATTCATAAAATC
1 AGATTCGTAAAATC
79403771 TTGCAAATAA
Statistics
Matches: 54, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.43, C:0.16, G:0.18, T:0.24
Consensus pattern (54 bp):
AGATTCGTAAAATCACATAAGTAGAAGGTCATGAACGAAAATCAACAAACAGCA
Found at i:79403785 original size:54 final size:53
Alignment explanation
Indices: 79403727--79403841 Score: 140
Period size: 53 Copynumber: 2.2 Consensus size: 53
79403717 CCATTAGTAG
* ** *
79403727 AAGGTCGTGATCTTAAATCAACAAACTGGGAGATTCATAAAATCTTGCAAATAA
1 AAGGTCGTCATCGCAAATCAA-AAACTGCGAGATTCATAAAATCTTGCAAATAA
* * * * *
79403781 AAGGTCGTCATCGCCAATCAATAAGTGCGAGATTCATAAAATCTTGTAAGTAA
1 AAGGTCGTCATCGCAAATCAAAAACTGCGAGATTCATAAAATCTTGCAAATAA
79403834 AAGGTCGT
1 AAGGTCGT
79403842 AATTGTAAAT
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
53 35 0.67
54 17 0.33
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (53 bp):
AAGGTCGTCATCGCAAATCAAAAACTGCGAGATTCATAAAATCTTGCAAATAA
Found at i:79404014 original size:54 final size:54
Alignment explanation
Indices: 79403955--79404167 Score: 221
Period size: 54 Copynumber: 3.9 Consensus size: 54
79403945 GAATCACATT
* * *
79403955 GTCTACTGATTTACGATAACGATCTTCTACTTAAGAGATTTTATTAATCTCACG
1 GTCTACTGATTTACGATCACGACCTTCTACTTAAGAGATTTTATGAATCTCACG
* * * * * * * ***
79404009 ATCTACTGATTTACGATGATGACCTTTTACTTATGGGATTTTATGAATTTGTTG
1 GTCTACTGATTTACGATCACGACCTTCTACTTAAGAGATTTTATGAATCTCACG
* * * **
79404063 GTCCACTGATTTACGATCACAACCTTCTACTTAAGGGATTTTACTG-ATCTTGCG
1 GTCTACTGATTTACGATCACGACCTTCTACTTAAGAGATTTTA-TGAATCTCACG
* * *
79404117 GTCTACTGATTTATGATCATGACCTTCTACTTACGAGATTTTATGAATCTC
1 GTCTACTGATTTACGATCACGACCTTCTACTTAAGAGATTTTATGAATCTC
79404168 GTAGTCTGCT
Statistics
Matches: 127, Mismatches: 30, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
53 2 0.02
54 123 0.97
55 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.40
Consensus pattern (54 bp):
GTCTACTGATTTACGATCACGACCTTCTACTTAAGAGATTTTATGAATCTCACG
Found at i:79404180 original size:108 final size:108
Alignment explanation
Indices: 79403955--79404220 Score: 293
Period size: 108 Copynumber: 2.5 Consensus size: 108
79403945 GAATCACATT
* * * *
79403955 GTCTACTGATTTACGATAACGATCTTCTACTTAAGAGATTTTATTAATCTCACGATCTACTGATT
1 GTCTACTGATTTACGATAACAACCTTCTACTTAAGAGATTTTACTGATCTCACGATCTACTGATT
* * * * * *
79404020 TACGATGATGACCTTTTACTTATGGGATTTTATGAATTTGTTG
66 TACGATCATGACCTTCTACTTACGAGATTTTATGAATTCGTTA
* * * ** *
79404063 GTCCACTGATTTACGATCACAACCTTCTACTTAAGGGATTTTACTGATCTTGCGGTCTACTGATT
1 GTCTACTGATTTACGATAACAACCTTCTACTTAAGAGATTTTACTGATCTCACGATCTACTGATT
*
79404128 TATGATCATGACCTTCTACTTACGAGATTTTATGAATCTCG-TA
66 TACGATCATGACCTTCTACTTACGAGATTTTATGAAT-TCGTTA
* * * * * *
79404171 GTCTGCTGATTTATGATTACAACATTATACTTAA-ATGATTTTACGGATCT
1 GTCTACTGATTTACGATAACAACCTTCTACTTAAGA-GATTTTACTGATCT
79404221 AGACGTGTTG
Statistics
Matches: 131, Mismatches: 25, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
108 129 0.98
109 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (108 bp):
GTCTACTGATTTACGATAACAACCTTCTACTTAAGAGATTTTACTGATCTCACGATCTACTGATT
TACGATCATGACCTTCTACTTACGAGATTTTATGAATTCGTTA
Found at i:79404202 original size:54 final size:54
Alignment explanation
Indices: 79403955--79404220 Score: 173
Period size: 54 Copynumber: 4.9 Consensus size: 54
79403945 GAATCACATT
* * * * * * *
79403955 GTCTACTGATTTACGATAACGATCTTCTACTTAAGAGATTTTATTAATCTCAC-
1 GTCTACTGATTTATGATCACAACCTTCTACTTAAGAGATTTTACTGATCTCGCA
* * ** * * * * **
79404008 GATCTACTGATTTACGATGATGACCTTTTACTTATGGGATTTTA-TGAAT-TTGTTG
1 G-TCTACTGATTTATGATCACAACCTTCTACTTAAGAGATTTTACTG-ATCTCG-CA
* * * * *
79404063 GTCCACTGATTTACGATCACAACCTTCTACTTAAGGGATTTTACTGATCTTGCG
1 GTCTACTGATTTATGATCACAACCTTCTACTTAAGAGATTTTACTGATCTCGCA
** * *
79404117 GTCTACTGATTTATGATCATGACCTTCTACTTACGAGATTTTA-TGAATCTCGTA
1 GTCTACTGATTTATGATCACAACCTTCTACTTAAGAGATTTTACTG-ATCTCGCA
* * * * *
79404171 GTCTGCTGATTTATGATTACAACATTATACTTAA-ATGATTTTACGGATCT
1 GTCTACTGATTTATGATCACAACCTTCTACTTAAGA-GATTTTACTGATCT
79404221 AGACGTGTTG
Statistics
Matches: 170, Mismatches: 34, Indels: 17
0.77 0.15 0.08
Matches are distributed among these distances:
53 6 0.04
54 157 0.92
55 7 0.04
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (54 bp):
GTCTACTGATTTATGATCACAACCTTCTACTTAAGAGATTTTACTGATCTCGCA
Found at i:79404535 original size:54 final size:54
Alignment explanation
Indices: 79404465--79404654 Score: 227
Period size: 54 Copynumber: 3.5 Consensus size: 54
79404455 AAAGCTTCAG
* * * * * * * *
79404465 TTGACTTACAATCACGACATTTTATTTACGAGATTTTATGAATCTGACAGTCTT
1 TTGATTTACAATCACGACCTTCTACTTATGGGATTTTACGAATCTGACAATCTT
79404519 TTGATTTACAATCACGACCTTCTACTTATGGGATTTTACGAATCTGACAATCTT
1 TTGATTTACAATCACGACCTTCTACTTATGGGATTTTACGAATCTGACAATCTT
* * * **
79404573 TTGATTTACGATCACGACCTTCTACTTATGGGATTTTACGAATCTCACGATCCA
1 TTGATTTACAATCACGACCTTCTACTTATGGGATTTTACGAATCTGACAATCTT
* ** *
79404627 CTGATTTATGATCACAACCTTCTACTTA
1 TTGATTTACAATCACGACCTTCTACTTA
79404655 CATGATTTTA
Statistics
Matches: 120, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 120 1.00
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (54 bp):
TTGATTTACAATCACGACCTTCTACTTATGGGATTTTACGAATCTGACAATCTT
Found at i:79404557 original size:30 final size:31
Alignment explanation
Indices: 79404523--79404616 Score: 98
Period size: 30 Copynumber: 3.3 Consensus size: 31
79404513 AGTCTTTTGA
79404523 TTTAC-AATCACGACCTTCTACTTATGGGAT
1 TTTACGAATCACGACCTTCTACTTATGGGAT
* **
79404553 TTTACGAATC-TGACAATCT--TT-T--GA-
1 TTTACGAATCACGACCTTCTACTTATGGGAT
79404577 TTTACG-ATCACGACCTTCTACTTATGGGAT
1 TTTACGAATCACGACCTTCTACTTATGGGAT
79404607 TTTACGAATC
1 TTTACGAATC
79404617 TCACGATCCA
Statistics
Matches: 49, Mismatches: 6, Indels: 17
0.68 0.08 0.24
Matches are distributed among these distances:
23 3 0.06
24 12 0.24
25 2 0.04
26 2 0.04
27 2 0.04
28 2 0.04
29 2 0.04
30 17 0.35
31 7 0.14
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTACGAATCACGACCTTCTACTTATGGGAT
Found at i:79404909 original size:451 final size:450
Alignment explanation
Indices: 79404068--79405275 Score: 1279
Period size: 451 Copynumber: 2.7 Consensus size: 450
79404058 TGTTGGTCCA
* *
79404068 CTGATTTACGATCACAACCTTCTACTTAAGGGATTTTACTG-ATCTTGCGGTCTACTGATTTATG
1 CTGATTTACGATCACGACCTTCTACTTAAGGGATTTTAC-GAATCTTGCGGTCTACTGATTTACG
* * * * *
79404132 ATCATGACCTTCTACTTACGAGATTTTATGAATCT-CGTAGTCTGCTGATTTATGATTACAACAT
65 ATCACGACCTTCTACTTATGAGATTTTATGAATCTACG-A-TCCGCTGATTTATGATCACAACCT
* * * * *
79404196 TATACTTAAATGATTTTACGGATCTAGACGTGTTGAGGAAGAACTTAAAATTGACCTATT-TTCC
128 TCTACTTAAATGATTTTACGAATCTAGGCGTGTTGAGGAAGAACTCAAAACTGACC-ATTCTTCC
* * * *
79404260 TTTAAAGCAAGTTAGATGCTAGAGATGATGAATATAGGGGTGTTGAGGATGAATTCAAAATTGAG
192 TTTAAAGCAAGTTAGATGCTAGAGATGATGAATATAGGCGTGTTGAGGA-GAACTCAAAACTGAC
* *
79404325 CATGAAA-GATGGATGATAGGGGAATCAATTTTGTTACATTGTCTTTGTGAGCTGAAGCTAGTTT
256 CATGAAAGGATGGATGATAGGGGAATCAATTTTGTTACATTCTCTTTGTGAGCTGAAACTAGTTT
* * * * * * * * *
79404389 TCTTCGCCATAGGTTTGTAATGAGGCTTGAAATGGATCAATCTGTTAAAAAAAAGTAACTTTCTG
321 TCTTCACAATAAGTCTGAAATAAGGCTTGAAATGGATCAATCTCTCAAAAAAAAGGAACTTTCTG
* *
79404454 AAAAGCTTCAGTTGACTT-ACAATCACGACATTTTA-TT-TACGAGATTTTATGAATCTGACAGT
386 AAAAGCTTCAGTTGA-TTGACAATCACGACATTTTACTTATA-G-GATTTTACGAATCTAACAGT
*
79404516 CTT
448 CTG
* * * ** **
79404519 TTGATTTACAATCACGACCTTCTACTTATGGGATTTTACGAATC-TGACAATCTTTTGATTTACG
1 CTGATTTACGATCACGACCTTCTACTTAAGGGATTTTACGAATCTTG-CGGTCTACTGATTTACG
* * *
79404583 ATCACGACCTTCTACTTATGGGATTTTACGAATCTCACGATCCACTGATTTATGATCACAACCTT
65 ATCACGACCTTCTACTTATGAGATTTTATGAATCT-ACGATCCGCTGATTTATGATCACAACCTT
* * * * * *
79404648 CTACTTACATGATTTTACAAATCTAGGCATGTTGAGGATGAACTCAAAACTGATCATTCTGCCCT
129 CTACTTAAATGATTTTACGAATCTAGGCGTGTTGAGGAAGAACTCAAAACTGACCATTCT-TCCT
* * *
79404713 TCAGAA-CAAGTTAAATGCTAGAGATGATGAATATAGCCGTGTTGAGGA-AACTCAAAACTGACC
193 TTA-AAGCAAGTTAGATGCTAGAGATGATGAATATAGGCGTGTTGAGGAGAACTCAAAACTGACC
* * * * *
79404776 TTGAAAGGA-GGAT-A-A-TGGAATTAATTTTGTTATATTACT-TTTGTGAGGTAGAAACTAGTT
257 ATGAAAGGATGGATGATAGGGGAATCAATTTTGTTACATT-CTCTTTGTGAGCT-GAAACTAGTT
* **
79404836 CTT-TTCACAATAAGTCTGAAATAAGGCTTGAAATGTATTGATCTACTCAGAAAAACAAGGAACT
320 -TTCTTCACAATAAGTCTGAAATAAGGCTTGAAATGGATCAATCT-CTCA-AAAAA-AAGGAACT
* *
79404900 CTT-TGAAAAGCTTCAGTTGATTGACAATCATGACCTTTTACTTATAGGATTTTACGAATCTAAC
381 -TTCTGAAAAGCTTCAGTTGATTGACAATCACGACATTTTACTTATAGGATTTTACGAATCTAAC
79404964 AGTCTG
445 AGTCTG
* * *
79404970 CTGATTTACGATCACGACCTTCTACTTACGGGATTTTACGAATCTTGTGGTCTACTAATTTACGA
1 CTGATTTACGATCACGACCTTCTACTTAAGGGATTTTACGAATCTTGCGGTCTACTGATTTACGA
* * * * * *
79405035 CCACAACCTTCTACTTATGAGATTTTATGAATCTTATGGTCCGCTTATTTACGATCACAACCTTC
66 TCACGACCTTCTACTTATGAGATTTTATGAATC-TACGATCCGCTGATTTATGATCACAACCTTC
* ** * * * * *
79405100 TAATTTTGA-GATTTTATGAATCTAGGTGTATTGAGGAAGAACTCAAAACTAACCAGTCTATCCT
130 T-ACTTAAATGATTTTACGAATCTAGGCGTGTTGAGGAAGAACTCAAAACTGACCATTCT-TCCT
* * * * *
79405164 TTAAAGCAAGTTAGATGCTAGAGATTAAGAATAAAGGCATGTTAAGGAAGAACTCAAAACTGACC
193 TTAAAGCAAGTTAGATGCTAGAGATGATGAATATAGGCGTGTTGAGG-AGAACTCAAAACTGACC
* * * *
79405229 ATGAAA-GAAGAAGGAT-GGAGGAATCAATTTTGTAACATTGC-CTTTGT
257 ATGAAAGGATGGATGATAGG-GGAATCAATTTTGTTACATT-CTCTTTGT
79405276 AAAACCCCAA
Statistics
Matches: 620, Mismatches: 107, Indels: 55
0.79 0.14 0.07
Matches are distributed among these distances:
447 27 0.04
448 43 0.07
449 5 0.01
450 36 0.06
451 397 0.64
452 60 0.10
453 28 0.05
454 1 0.00
456 23 0.04
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (450 bp):
CTGATTTACGATCACGACCTTCTACTTAAGGGATTTTACGAATCTTGCGGTCTACTGATTTACGA
TCACGACCTTCTACTTATGAGATTTTATGAATCTACGATCCGCTGATTTATGATCACAACCTTCT
ACTTAAATGATTTTACGAATCTAGGCGTGTTGAGGAAGAACTCAAAACTGACCATTCTTCCTTTA
AAGCAAGTTAGATGCTAGAGATGATGAATATAGGCGTGTTGAGGAGAACTCAAAACTGACCATGA
AAGGATGGATGATAGGGGAATCAATTTTGTTACATTCTCTTTGTGAGCTGAAACTAGTTTTCTTC
ACAATAAGTCTGAAATAAGGCTTGAAATGGATCAATCTCTCAAAAAAAAGGAACTTTCTGAAAAG
CTTCAGTTGATTGACAATCACGACATTTTACTTATAGGATTTTACGAATCTAACAGTCTG
Found at i:79405004 original size:54 final size:54
Alignment explanation
Indices: 79404932--79405122 Score: 211
Period size: 54 Copynumber: 3.5 Consensus size: 54
79404922 GACAATCATG
* * * ** *
79404932 ACCTTTTACTTATAGGATTTTACGAATCTAACAGTCTGCTGATTTACGATCACG
1 ACCTTCTACTTATGGGATTTTACGAATCTTATGGTCTGCTGATTTACGATCACA
* * * * *
79404986 ACCTTCTACTTACGGGATTTTACGAATCTTGTGGTCTACTAATTTACGACCACA
1 ACCTTCTACTTATGGGATTTTACGAATCTTATGGTCTGCTGATTTACGATCACA
* * * *
79405040 ACCTTCTACTTATGAGATTTTATGAATCTTATGGTCCGCTTATTTACGATCACA
1 ACCTTCTACTTATGGGATTTTACGAATCTTATGGTCTGCTGATTTACGATCACA
* * * *
79405094 ACCTTCTAATTTTGAGATTTTATGAATCT
1 ACCTTCTACTTATGGGATTTTACGAATCT
79405123 AGGTGTATTG
Statistics
Matches: 116, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 116 1.00
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (54 bp):
ACCTTCTACTTATGGGATTTTACGAATCTTATGGTCTGCTGATTTACGATCACA
Found at i:79408285 original size:54 final size:53
Alignment explanation
Indices: 79408202--79408376 Score: 147
Period size: 54 Copynumber: 3.2 Consensus size: 53
79408192 TACTTTTGGT
* * *
79408202 ATTTTACGAATCTCACGGCCTGCTAATTTATGATGATAATCTTCTACTTATAAG
1 ATTTTACGAATCTCACGGTCTACTGATTTATGATGATAA-CTTCTACTTATAAG
* * ** * * *
79408256 ATTTTACGAATCTCGCAGTCTACTGATTTACAATGA-AGACCTTTTACTTACATG
1 ATTTTACGAATCTCACGGTCTACTGATTTATGATGATA-A-CTTCTACTTATAAG
** * * *
79408310 ATTTTACGAATCTCTTGGTCCACTGATTTATGATCATGACTTTCTACTTACT-AG
1 ATTTTACGAATCTCACGGTCTACTGATTTATGATGATAAC-TTCTACTTA-TAAG
*
79408364 ATTTTAAGAATCT
1 ATTTTACGAATCT
79408377 TGTGGCCCGT
Statistics
Matches: 94, Mismatches: 23, Indels: 8
0.75 0.18 0.06
Matches are distributed among these distances:
53 2 0.02
54 92 0.98
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.40
Consensus pattern (53 bp):
ATTTTACGAATCTCACGGTCTACTGATTTATGATGATAACTTCTACTTATAAG
Found at i:79408399 original size:54 final size:54
Alignment explanation
Indices: 79408296--79408489 Score: 158
Period size: 54 Copynumber: 3.6 Consensus size: 54
79408286 CAATGAAGAC
* * * * ** * *
79408296 CTTT-TACTTACATGATTTTACGAATCTCTTGGTCCACTGATTTATGATCATGA
1 CTTTCTACTTACAAGATTTTAAGAATCTCGTGGCCCGTTAATTTACGATCATGA
* * *
79408349 CTTTCTACTTACTAGATTTTAAGAATCTTGTGGCCCGTTGAA-TTACGATCATAA
1 CTTTCTACTTACAAGATTTTAAGAATCTCGTGGCCCGTT-AATTTACGATCATGA
* * * * *** *
79408403 TTTTCTACTTACGAGATTTTATGGATCTCGTGGTTTGTTAATTTACGATCACGA
1 CTTTCTACTTACAAGATTTTAAGAATCTCGTGGCCCGTTAATTTACGATCATGA
* * * *
79408457 CCTTCTTCTTACAAGATTTTACGAATGTCGTGG
1 CTTTCTACTTACAAGATTTTAAGAATCTCGTGG
79408490 TCCGCTGATT
Statistics
Matches: 110, Mismatches: 28, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
53 6 0.05
54 103 0.94
55 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.16, T:0.42
Consensus pattern (54 bp):
CTTTCTACTTACAAGATTTTAAGAATCTCGTGGCCCGTTAATTTACGATCATGA
Found at i:79409242 original size:54 final size:53
Alignment explanation
Indices: 79409179--79409384 Score: 163
Period size: 54 Copynumber: 3.8 Consensus size: 53
79409169 AAGCTTCAGT
79409179 TGATTTACAATCACGACCTCT-TACTTACAGGATTTTATGAATCTCAATGTTTGC
1 TGATTTACAATCACGACCTCTCTACTTACAGGATTTTATGAATCT--ATGTTTGC
* * ** *
79409233 TGATTTACAATGACAACCT-TCTACTTATGGGATTTTACGAATCT-TGTAATCTGC
1 TGATTTACAATCACGACCTCTCTACTTACAGGATTTTATGAATCTATGT--T-TGC
* * * * *
79409287 TGATTTACAATCACGGCC-ATCTATTTACGGGATTTTATGGATCTAGTGTTTCGC
1 TGATTTACAATCACGACCTCTCTACTTACAGGATTTTATGAATCTA-TGTTT-GC
* * * * *
79409341 TAATTTA-AGATCAC-AACTTTCTATTTACAGGATTTTTTGAATCT
1 TGATTTACA-ATCACGACCTCTCTACTTACAGGATTTTATGAATCT
79409385 CACAATCTAC
Statistics
Matches: 123, Mismatches: 19, Indels: 20
0.76 0.12 0.12
Matches are distributed among these distances:
51 3 0.02
53 5 0.04
54 112 0.91
56 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (53 bp):
TGATTTACAATCACGACCTCTCTACTTACAGGATTTTATGAATCTATGTTTGC
Found at i:79409423 original size:108 final size:108
Alignment explanation
Indices: 79409179--79409439 Score: 258
Period size: 108 Copynumber: 2.4 Consensus size: 108
79409169 AAGCTTCAGT
* *
79409179 TGATTTACAATCACGACC-TCTTACTTACAGGATTTTATGAATCTCAATGTTTGCTGATTTACAA
1 TGATTTACAATCACGACCATC-TACTTACGGGATTTTATGAATCTCAATGTTTGCTAATTTACAA
* ** *** *
79409243 TGACAACCTTCTACTTATGGGATTTTACGAATCTTGTAATCTGC
65 TCACAACCTTCTACTTACAGGATTTTACGAATCTCACAATCTAC
* * * *
79409287 TGATTTACAATCACGGCCATCTATTTACGGGATTTTATGGATCT-AGTGTTTCGCTAATTTA-AG
1 TGATTTACAATCACGACCATCTACTTACGGGATTTTATGAATCTCAATGTTT-GCTAATTTACA-
* * **
79409350 ATCACAACTTTCTATTTACAGGATTTTTTGAATCTCACAATCTAC
64 ATCACAACCTTCTACTTACAGGATTTTACGAATCTCACAATCTAC
** * * * * *
79409395 TGATTTATGATCATGACCTTCTACTTACGAGATTCTACGAATCTC
1 TGATTTACAATCACGACCATCTACTTACGGGATTTTATGAATCTC
79409440 GCAGTCTATT
Statistics
Matches: 122, Mismatches: 27, Indels: 7
0.78 0.17 0.04
Matches are distributed among these distances:
107 7 0.06
108 113 0.93
109 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.39
Consensus pattern (108 bp):
TGATTTACAATCACGACCATCTACTTACGGGATTTTATGAATCTCAATGTTTGCTAATTTACAAT
CACAACCTTCTACTTACAGGATTTTACGAATCTCACAATCTAC
Found at i:79409993 original size:108 final size:109
Alignment explanation
Indices: 79409814--79410144 Score: 305
Period size: 108 Copynumber: 3.1 Consensus size: 109
79409804 GATGGCGACC
* * * * * * *
79409814 TTCTACTTACGGGATTTTACGAATATCGA-GGTCTACTGATTTACTATTAAGACCTTCTACTGAC
1 TTCTACTTACGGGATTTTACAAATCTCGATGGTCCACTGATTTACGATCATGACCTTCTACTTAC
* * * *
79409878 TGGATTTTACGAATATCGT-AGTCCACTGATTTACCATCACAACT
66 AGGATTTTACAAATCTCGTGA-TCCACTGATTTACAATCACAACT
* * * *
79409922 TTCTACTTACGGGATTTCACTAATCTC-ATGGTCCACAGATTTACGATCATGACCTTTTACTTA-
1 TTCTACTTACGGGATTTTACAAATCTCGATGGTCCACTGATTTACGATCATGACCTTCTACTTAC
* * * *
79409985 AGGAATTTTACAAACCTCGTGATCCGCTAATTTACAATCACGACCT
66 AGG-ATTTTACAAATCTCGTGATCCACTGATTTACAATCAC-AACT
* * * * * * * * * *
79410031 TT-TACTTATGAGATTTTACAAACCTCGCT-ATCCATTCATTTACGATCATGACATTCTATTTAT
1 TTCTACTTACGGGATTTTACAAATCTCGATGGTCCACTGATTTACGATCATGACCTTCTACTTAC
* * *
79410094 AGGATTTTACAAATCTCGTGTTCCACTGATTTACGATCACGACT
66 AGGATTTTACAAATCTCGTGATCCACTGATTTACAATCACAACT
79410138 TTCTACT
1 TTCTACT
79410145 GACGTAATTT
Statistics
Matches: 178, Mismatches: 38, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
107 7 0.04
108 161 0.90
109 10 0.06
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.37
Consensus pattern (109 bp):
TTCTACTTACGGGATTTTACAAATCTCGATGGTCCACTGATTTACGATCATGACCTTCTACTTAC
AGGATTTTACAAATCTCGTGATCCACTGATTTACAATCACAACT
Found at i:79410155 original size:54 final size:54
Alignment explanation
Indices: 79409744--79410164 Score: 198
Period size: 54 Copynumber: 7.8 Consensus size: 54
79409734 GCTTTAGTTA
* ** * * *
79409744 ATTTACAATCACGACCTTT-TACTTACGGGATTTTACAAATCT--TAAAGTCTACTA
1 ATTTACGATCACGA-CTTTCTACTTACGTAATTTTACAAATCTCGT-GA-TCCACTG
* ** * ** * * * * *
79409798 ATTTATGATGGCGACCTTCTACTTACGGGATTTTACGAATATCGAGGTCTACTG
1 ATTTACGATCACGACTTTCTACTTACGTAATTTTACAAATCTCGTGATCCACTG
* * * * * * * *
79409852 ATTTACTATTAAGACCTTCTACTGAC-TGGATTTTACGAATATCGT-AGTCCACTG
1 ATTTACGATCACGACTTTCTACTTACGT-AATTTTACAAATCTCGTGA-TCCACTG
* * ** * * * * *
79409906 ATTTACCATCACAACTTTCTACTTACGGGATTTCACTAATCTCATGGTCCACAG
1 ATTTACGATCACGACTTTCTACTTACGTAATTTTACAAATCTCGTGATCCACTG
* * * * * *
79409960 ATTTACGATCATGACCTTT-TACTTAAGGAATTTTACAAACCTCGTGATCCGCTA
1 ATTTACGATCACGA-CTTTCTACTTACGTAATTTTACAAATCTCGTGATCCACTG
* * * * *
79410014 ATTTACAATCACGACCTTT-TACTTATG-AGATTTTACAAACCTCGCT-ATCCATTC
1 ATTTACGATCACGA-CTTTCTACTTACGTA-ATTTTACAAATCTCG-TGATCCACTG
* * * *
79410068 ATTTACGATCATGACATTCTATTTA--TAGGATTTTACAAATCTCGTGTTCCACTG
1 ATTTACGATCACGACTTTCTACTTACGTA--ATTTTACAAATCTCGTGATCCACTG
* *
79410122 ATTTACGATCACGACTTTCTACTGACGTAATTTTGACGAATCT
1 ATTTACGATCACGACTTTCTACTTACGTAATTTT-ACAAATCT
79410165 AGGCATTTTG
Statistics
Matches: 284, Mismatches: 66, Indels: 33
0.74 0.17 0.09
Matches are distributed among these distances:
53 9 0.03
54 261 0.92
55 12 0.04
56 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.37
Consensus pattern (54 bp):
ATTTACGATCACGACTTTCTACTTACGTAATTTTACAAATCTCGTGATCCACTG
Found at i:79410494 original size:54 final size:54
Alignment explanation
Indices: 79410436--79410674 Score: 178
Period size: 54 Copynumber: 4.4 Consensus size: 54
79410426 CACGGCATAT
** * * * *
79410436 TACTTACGGGATTTTATGAATCTCGAGGTCTGCTGATTTATGATCACGACCTTC
1 TACTTACAAGATTTTACGAATCTCGAGGTCCGCTAATTTATAATCACGACCTTC
* * * * * * * * * *
79410490 TACTTACCATATTTTACGAATCCCGTGCTTCGTTGATTTACAATCACAACCTTC
1 TACTTACAAGATTTTACGAATCTCGAGGTCCGCTAATTTATAATCACGACCTTC
*** ** * *
79410544 TACTTATGGGATTTTATAAATCTCGTA-GTCCGCTAATTT-TCAATCATGACATTC
1 TACTTACAAGATTTTACGAATCTCG-AGGTCCGCTAATTTAT-AATCACGACCTTC
* * *
79410598 AACTTACAAGATTTTACAAATCTC-ACGGTCCGCTAATTTATGATCACGACCTTC
1 TACTTACAAGATTTTACGAATCTCGA-GGTCCGCTAATTTATAATCACGACCTTC
* *
79410652 TACTAACATGATTTTACGAATCT
1 TACTTACAAGATTTTACGAATCT
79410675 AGGCGTGTTG
Statistics
Matches: 139, Mismatches: 41, Indels: 10
0.73 0.22 0.05
Matches are distributed among these distances:
52 1 0.01
54 137 0.99
55 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.37
Consensus pattern (54 bp):
TACTTACAAGATTTTACGAATCTCGAGGTCCGCTAATTTATAATCACGACCTTC
Found at i:79410603 original size:108 final size:108
Alignment explanation
Indices: 79410413--79410619 Score: 240
Period size: 108 Copynumber: 1.9 Consensus size: 108
79410403 AAGAGCTTAT
** * * * *
79410413 GTTGATTTACAATCACGGCATATTACTTACGGGATTTTATGAATCTCGAGGTCTGCTGATTTATG
1 GTTGATTTACAATCACAACATATTACTTACGGGATTTTATAAATCTCGAGGTCCGCTAATTTATA
* * * * *
79410478 ATCACGACCTTCTACTTACCATATTTTACGAATCCCGTGCTTC
66 ATCACGACATTCAACTTACAAGATTTTACAAATCCCGTGCTTC
* *
79410521 GTTGATTTACAATCACAACCT-TCTACTTATGGGATTTTATAAATCTCGTA-GTCCGCTAATTT-
1 GTTGATTTACAATCACAACATAT-TACTTACGGGATTTTATAAATCTCG-AGGTCCGCTAATTTA
*
79410583 TCAATCATGACATTCAACTTACAAGATTTTACAAATC
64 T-AATCACGACATTCAACTTACAAGATTTTACAAATC
79410620 TCACGGTCCG
Statistics
Matches: 82, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
107 2 0.02
108 79 0.96
109 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (108 bp):
GTTGATTTACAATCACAACATATTACTTACGGGATTTTATAAATCTCGAGGTCCGCTAATTTATA
ATCACGACATTCAACTTACAAGATTTTACAAATCCCGTGCTTC
Found at i:79410868 original size:510 final size:506
Alignment explanation
Indices: 79410014--79411529 Score: 1786
Period size: 510 Copynumber: 3.0 Consensus size: 506
79410004 TGATCCGCTA
* * ** * *
79410014 ATTTACAATCACGACCTTTTACTTATGAGATTTTACAAACCTCGCTA-TCCATTCATTTACGATC
1 ATTTACAATCACGACCTTCTACTTATGAGATTTTACAAATCTCG-TAGTCCGCTAATTTACAATC
* * * * * *
79410078 ATGACATTCTATTTATAGGATTTTACAAATCTCGTGTTCCACTGATTTACGATCACGACTTTCTA
65 ATGACATTCTACTTATAGGATTTTACAAATCTCGCGGTCCGCTAATTTACGATCACGACCTTCTA
* * * * * * * **
79410143 CTGACGTAATTTTGACGAATCTAGGCATTTTGAAGAAAAACTAAAAATTGACATCTCAT-CTTTT
130 CTAAC-TGATTTT-ACGAATCTAGGCGTGTTGAAGAAGAACTAAAAATTGACCTTTC-TGCCCTT
* *
79410207 CAGAGCAAGTTAGATGCTAGAGATGATTAATATAGGCGAGTTGAGGAAGAACTCAAAACTGACCT
192 CAAAGCAAGTTAGATGCTAGAGATGATTAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCT
* *
79410272 TAAAAGAAAGAGGATAGAGGAATTAAATTTGTTACATTACCTTTGTGAGGCTAAAGCTAGTTCTC
257 TGAAAGAAA-A-GATAGAGGAATTAAATTTGTTACATTGCCTTTGTGAGGCTAAAGCTAGTTCTC
*** * * * *
79410337 TTCACCATACGCCTAAAATGAGGATTGAAATGGTTCGATCTACTTAGAAAAACAAAGAACTTTCT
320 TTCACCATATATCTGAAATGAGGCTTGAAATGGATCGATCTACTTAGAAAAACAAGGAACTTTCT
* *
79410402 TAAGAGCTT-ATGTTGATTTACAATCACGGCATATTACTTACGGGATTTTATGAATCTCGAGGTC
385 TAAGAGCTTCA-GTTGATTTACAATCACGACATTTTACTTACGGGATTTTATGAATCTCGAGGTC
* * ***
79410466 TGCTGATTTATGATCACGACCTTCTACTTACCATATTTTACGAATCCCGTGCTTCGTTG
449 -GCTGATTTACGATCACGACCTTCTACTTACCATATTTTACAAATCCCGTGCTGAATTG
* * * *
79410525 ATTTACAATCACAACCTTCTACTTATGGGATTTTATAAATCTCGTAGTCCGCTAATTTTCAATCA
1 ATTTACAATCACGACCTTCTACTTATGAGATTTTACAAATCTCGTAGTCCGCTAATTTACAATCA
* * * * *
79410590 TGACATTCAACTTACAAGATTTTACAAATCTCACGGTCCGCTAATTTATGATCACGACCTTCTAC
66 TGACATTCTACTTATAGGATTTTACAAATCTCGCGGTCCGCTAATTTACGATCACGACCTTCTAC
*
79410655 TAACATGATTTTACGAATCTAGGCGTGTTGAAGAAGAACTAAAAACTGACCTTTCTGCCCTTCAA
131 TAAC-TGATTTTACGAATCTAGGCGTGTTGAAGAAGAACTAAAAATTGACCTTTCTGCCCTTCAA
* *
79410720 AGCAAGTTAGATGCTAGAGATGATTAATATAAGCGTGTTGAGGAAGAACTCAAAACTAACCTTGA
195 AGCAAGTTAGATGCTAGAGATGATTAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTGA
* * *
79410785 AAGAATTAAGTTAGAGGAATCAAATTTGTTACATTGCCTTTGTGAGGCTGAAGCTAGTTCTCTTC
260 AAGAA--AAGATAGAGGAATTAAATTTGTTACATTGCCTTTGTGAGGCTAAAGCTAGTTCTCTTC
* * * * * *
79410850 ACCATATATTTGAAATGAGGCTTGAAATGGATCGATTTGCTCAGAAAAATAAGGAACTTACTTAA
323 ACCATATATCTGAAATGAGGCTTGAAATGGATCGATCTACTTAGAAAAACAAGGAACTTTCTTAA
* * * * * *
79410915 AAGCTTCAGTTGATTTACAATCACGACCTTTTACTTATGTG-TTATTATAAATCTCGTGGTCCGC
388 GAGCTTCAGTTGATTTACAATCACGACATTTTACTTACGGGATT-TTATGAATCTCGAGGT-CGC
* * * * ** *
79410979 TGATTTACGATTACAACCTTCTACTTACGAGATTTTACAAATCTTGTGGTGAATTG
451 TGATTTACGATCACGACCTTCTACTTACCATATTTTACAAATCCCGTGCTGAATTG
* * * * * * * * *
79411035 ATTTGCAATCATGACCTTCTACTTTATCA-ATTTTACGAATCTTGTGGTCAGCTGATTCACAATC
1 ATTTACAATCACGACCTTCTAC-TTATGAGATTTTACAAATCTCGTAGTCCGCTAATTTACAATC
* ** * * * * *
79411099 ATAACCGTCTACTTATAGGATTTTACGAATCTTGCAGTCCGCTAATTTACAATCATGACCTTCTA
65 ATGACATTCTACTTATAGGATTTTACAAATCTCGCGGTCCGCTAATTTACGATCACGACCTTCTA
* * * * *
79411164 CTTACGGAATTTTACGAATCTAGGCGTGTTGAAGAAGAACTAAAAATTGACCTTTTTGGCCTTTA
130 CTAACTG-ATTTTACGAATCTAGGCGTGTTGAAGAAGAACTAAAAATTGACCTTTCTGCCCTTCA
* * * *
79411229 AAGCAAGTTAGATGCTACAGATGGTTAACATAGGCATGTTGAGGAAGAACTCAAAACTGACCTTG
194 AAGCAAGTTAGATGCTAGAGATGATTAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTG
* * * *
79411294 AAA-AAAGAGAATAAAAGAATTAAATTTGTTACATTGCCTTTGTGAGGCTAAAGCTAATTCTTTT
259 AAAGAAA-AG-ATAGAGGAATTAAATTTGTTACATTGCCTTTGTGAGGCTAAAGCTAGTTCTCTT
* * * *
79411358 CACCAAATATCTGAAATGAGGCTTGACATGGATCGATCTATTTAGTAAAACAAGGAACTTTCTTA
322 CACCATATATCTGAAATGAGGCTTGAAATGGATCGATCTACTTAGAAAAACAAGGAACTTTCTTA
* * * * * *
79411423 AGAGCTTCAGTTGATTTACAATCACAACTTTTTACTTACGGGATTTTAGGAATCTCACAGTTCGT
387 AGAGCTTCAGTTGATTTACAATCACGACATTTTACTTACGGGATTTTATGAATCTC-GAGGTCGC
*
79411488 TGATTTACGATCACGACCTTCTACTTA-CATGATTTTTCAAAT
451 TGATTTACGATCACGACCTTCTACTTACCAT-ATTTTACAAAT
79411530 ATAAGCGTGT
Statistics
Matches: 846, Mismatches: 145, Indels: 30
0.83 0.14 0.03
Matches are distributed among these distances:
507 1 0.00
508 3 0.00
509 191 0.23
510 528 0.62
511 122 0.14
512 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33
Consensus pattern (506 bp):
ATTTACAATCACGACCTTCTACTTATGAGATTTTACAAATCTCGTAGTCCGCTAATTTACAATCA
TGACATTCTACTTATAGGATTTTACAAATCTCGCGGTCCGCTAATTTACGATCACGACCTTCTAC
TAACTGATTTTACGAATCTAGGCGTGTTGAAGAAGAACTAAAAATTGACCTTTCTGCCCTTCAAA
GCAAGTTAGATGCTAGAGATGATTAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTGAA
AGAAAAGATAGAGGAATTAAATTTGTTACATTGCCTTTGTGAGGCTAAAGCTAGTTCTCTTCACC
ATATATCTGAAATGAGGCTTGAAATGGATCGATCTACTTAGAAAAACAAGGAACTTTCTTAAGAG
CTTCAGTTGATTTACAATCACGACATTTTACTTACGGGATTTTATGAATCTCGAGGTCGCTGATT
TACGATCACGACCTTCTACTTACCATATTTTACAAATCCCGTGCTGAATTG
Found at i:79411113 original size:108 final size:107
Alignment explanation
Indices: 79410927--79411184 Score: 241
Period size: 108 Copynumber: 2.4 Consensus size: 107
79410917 GCTTCAGTTG
* * * ** ** * * * *
79410927 ATTTACAATCACGACCTTTTACTTATGTGTTATTATAAATCTCGTGGTCCGCTGATTTACGATTA
1 ATTTACAATCATGACCTTCTACTTACGAATT-TTACGAATCTCGTGGTCAGCTGATTCACAATCA
* ** * * *
79410992 CAACCTTCTACTTACGA-GATTTTACAAATCTTGTGGTGAATTG
65 CAACCGTCTACTTA-GAGGATTTTACAAATCTTGCAGTCAACTA
* *
79411035 ATTTGCAATCATGACCTTCTACTTTATC-AATTTTACGAATCTTGTGGTCAGCTGATTCACAATC
1 ATTTACAATCATGACCTTCTAC-TTA-CGAATTTTACGAATCTCGTGGTCAGCTGATTCACAATC
* * * **
79411099 ATAACCGTCTACTTATAGGATTTTACGAATCTTGCAGTCCGCTA
64 ACAACCGTCTACTTAGAGGATTTTACAAATCTTGCAGTCAACTA
79411143 ATTTACAATCATGACCTTCTACTTACGGAATTTTACGAATCT
1 ATTTACAATCATGACCTTCTACTTAC-GAATTTTACGAATCT
79411185 AGGCGTGTTG
Statistics
Matches: 120, Mismatches: 25, Indels: 10
0.77 0.16 0.06
Matches are distributed among these distances:
106 1 0.01
107 4 0.03
108 110 0.92
109 5 0.04
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.38
Consensus pattern (107 bp):
ATTTACAATCATGACCTTCTACTTACGAATTTTACGAATCTCGTGGTCAGCTGATTCACAATCAC
AACCGTCTACTTAGAGGATTTTACAAATCTTGCAGTCAACTA
Found at i:79411122 original size:54 final size:53
Alignment explanation
Indices: 79410920--79411184 Score: 199
Period size: 54 Copynumber: 4.9 Consensus size: 53
79410910 CTTAAAAGCT
* ** * * ** *
79410920 TCAGTTGATTTACAATCACGACCTTTTACTTATGTG-TTATTATAAATCTCGTGG
1 TCAGCTGATTTACAATCATAACCTTCTACTTAAG-GATT-TTACGAATCTTGTGG
* * * * * *
79410974 TCCGCTGATTTACGATTACAACCTTCTACTTACGAGATTTTACAAATCTTGTGG
1 TCAGCTGATTTACAATCATAACCTTCTACTTAAG-GATTTTACGAATCTTGTGG
* ** * * ***
79411028 TGAATTGATTTGCAATCATGACCTTCTACTTTATCAATTTTACGAATCTTGTGG
1 TCAGCTGATTTACAATCATAACCTTCTAC-TTAAGGATTTTACGAATCTTGTGG
* * **
79411082 TCAGCTGATTCACAATCATAACCGTCTACTTATAGGATTTTACGAATCTTGCAG
1 TCAGCTGATTTACAATCATAACCTTCTACTTA-AGGATTTTACGAATCTTGTGG
* * * *
79411136 TCCGCTAATTTACAATCATGACCTTCTACTTACGGAATTTTACGAATCT
1 TCAGCTGATTTACAATCATAACCTTCTACTTAAGG-ATTTTACGAATCT
79411185 AGGCGTGTTG
Statistics
Matches: 166, Mismatches: 41, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
53 5 0.03
54 156 0.94
55 5 0.03
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.38
Consensus pattern (53 bp):
TCAGCTGATTTACAATCATAACCTTCTACTTAAGGATTTTACGAATCTTGTGG
Found at i:79411789 original size:348 final size:347
Alignment explanation
Indices: 79411116--79411824 Score: 870
Period size: 348 Copynumber: 2.0 Consensus size: 347
79411106 TCTACTTATA
** * *
79411116 GGATTTTACGAATCTTGCAGTCCGCTAATTTACAATCATGACCTTCTACTTACGGAATTTTACGA
1 GGATTTTACGAATCTCACAGTCCGCTAATTTACAATCACGACCTTCTACTTACGGAATTTTACAA
* * ** * * * *
79411181 ATCTAGGCGTGTTGAAGAAGAACTAAAAATTGACCTTTTTGGCCTTTAAAGCAAGTTAGATGCTA
66 ATATAAGCGTGTTGAAGAAGAACTAAAAAGGGACCTATCTGCCCTTCAAAGCAAGTTAGATGCTA
*
79411246 CAGATGGTTAACATAGGCATGTTGAGGAAGAACTCAAAACTGACCTTGAAAAAAGAGAATAAAAG
131 CAGATAGTTAACATAGGCATGTTGAGGAAGAACTCAAAACTGACCTTGAAAAAAGAGAATAAAAG
* * *
79411311 AATTAAATTTGTTACATTGCCTTTGTGAGGCTAAAGCTAATTCTTTTCACCAAATATCTGAAATG
196 AATCAAATTTGTTACATTGCCTTTGTGAGGCTAAAGCTAATTCTCTTCACCAAACATCTGAAATG
* * * * * * *
79411376 AGGCTTGACATGGATCGATCTATTTAGTAAAACAAGGAACTTTCTTAAGAGCTTCAGTTGATTTA
261 AGGCTCGAAATGGATCGATCTATTCAGAAAAACAAGGAACTTTCTGAAAAGCTTCAGTAGATTTA
79411441 CAATCACAACTTTTTACTTACG
326 CAATCACAACTTTTTACTTACG
* * * * * * *
79411463 GGATTTTAGGAATCTCACAGTTCGTTGATTTACGATCACGACCTTCTACTTACATG-ATTTTTCA
1 GGATTTTACGAATCTCACAGTCCGCTAATTTACAATCACGACCTTCTACTTAC-GGAATTTTACA
* * * * *
79411527 AATATAAGCGTGTTGAGGAAGAACTCAAAAGGGACCTATCTGCCCTTCAGAGCATGTTAGTTGCT
65 AATATAAGCGTGTTGAAGAAGAACTAAAAAGGGACCTATCTGCCCTTCAAAGCAAGTTAGATGCT
* * * * *
79411592 AGAGATAGTTAATATAGGCGTGTTGAGGAAGAACTTAAAA-TAGACCTT-AAAAGAAGGAGGATA
130 ACAGATAGTTAACATAGGCATGTTGAGGAAGAACTCAAAACT-GACCTTGAAAA-AA-GAGAATA
* * * * * *
79411655 AAGGAATCAATTTTG-TAGCATTGCCTTTGTGAGGCTGAAGCTAGTTCTCTTCACCATACGTCTG
192 AAAGAATCAAATTTGTTA-CATTGCCTTTGTGAGGCTAAAGCTAATTCTCTTCACCAAACATCTG
* * *
79411719 AAATGAGGCTCGAAATGGATTGATCT-TATCAGAAAAACAAGGGACTTTCTGAAAAGCTTTAGTA
256 AAATGAGGCTCGAAATGGATCGATCTAT-TCAGAAAAACAAGGAACTTTCTGAAAAGCTTCAGTA
79411783 GATTTACAATCACAACTTTTTACTTACG
320 GATTTACAATCACAACTTTTTACTTACG
* *
79411811 GGACTTTACAAATC
1 GGATTTTACGAATC
79411825 ACGTGGTCTA
Statistics
Matches: 304, Mismatches: 52, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
346 5 0.02
347 149 0.49
348 150 0.49
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.31
Consensus pattern (347 bp):
GGATTTTACGAATCTCACAGTCCGCTAATTTACAATCACGACCTTCTACTTACGGAATTTTACAA
ATATAAGCGTGTTGAAGAAGAACTAAAAAGGGACCTATCTGCCCTTCAAAGCAAGTTAGATGCTA
CAGATAGTTAACATAGGCATGTTGAGGAAGAACTCAAAACTGACCTTGAAAAAAGAGAATAAAAG
AATCAAATTTGTTACATTGCCTTTGTGAGGCTAAAGCTAATTCTCTTCACCAAACATCTGAAATG
AGGCTCGAAATGGATCGATCTATTCAGAAAAACAAGGAACTTTCTGAAAAGCTTCAGTAGATTTA
CAATCACAACTTTTTACTTACG
Found at i:79412318 original size:54 final size:54
Alignment explanation
Indices: 79412257--79412381 Score: 144
Period size: 54 Copynumber: 2.3 Consensus size: 54
79412247 TTTTACTTCT
* *
79412257 GAGATTTTACGAATTTC-ACGGTACGCTGATTTACGATGATGACGTTCTACTTAC
1 GAGATTTTACGAATCTCTAAGGTA-GCTGATTTACGATGATGACGTTCTACTTAC
* * * * * *
79412311 GATATTTTACAAAACTCTAAGTTAGCTGATTTACGATGATGACTTTTTACTTAC
1 GAGATTTTACGAATCTCTAAGGTAGCTGATTTACGATGATGACGTTCTACTTAC
* *
79412365 TAGATTATACGAATCTC
1 GAGATTTTACGAATCTC
79412382 ATGGCTCACT
Statistics
Matches: 57, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
54 53 0.93
55 4 0.07
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.38
Consensus pattern (54 bp):
GAGATTTTACGAATCTCTAAGGTAGCTGATTTACGATGATGACGTTCTACTTAC
Found at i:79412491 original size:54 final size:54
Alignment explanation
Indices: 79412430--79412550 Score: 145
Period size: 54 Copynumber: 2.2 Consensus size: 54
79412420 TCGTGGACCA
** * *
79412430 CTAATTTATTATCACGACATTATAATTAAGGGATTTTATGAATCTCGCA-ATCCG
1 CTAATTTAAGATCACAACATTATAATTAAGGGATTTTACGAATCTCG-AGATCCG
* * * *
79412484 CTAATTTAAGATCACAACCTTTTACTTAAGGGATTTTACGAATCTCGAGGTCCG
1 CTAATTTAAGATCACAACATTATAATTAAGGGATTTTACGAATCTCGAGATCCG
*
79412538 CTAATTTACGATC
1 CTAATTTAAGATC
79412551 GCGATCTTCT
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.02
54 56 0.98
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (54 bp):
CTAATTTAAGATCACAACATTATAATTAAGGGATTTTACGAATCTCGAGATCCG
Found at i:79412564 original size:54 final size:54
Alignment explanation
Indices: 79412455--79412582 Score: 152
Period size: 54 Copynumber: 2.4 Consensus size: 54
79412445 GACATTATAA
* *
79412455 TTAAGGGATTTTATGAATCTCGCAATCCGCTAATTTAAGATCACAACCTTTTAC
1 TTAAGGGATTTTACGAATCTCGCAATCCGCTAATTTAAGATCACAACCTTCTAC
* * * * *
79412509 TTAAGGGATTTTACGAATCTCG-AGGTCCGCTAATTTACGATCGCGATCTTCTAC
1 TTAAGGGATTTTACGAATCTCGCA-ATCCGCTAATTTAAGATCACAACCTTCTAC
*
79412563 TTATA-GAATTTTACGAATCT
1 TTA-AGGGATTTTACGAATCT
79412583 AGGGGTGTTG
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.02
54 62 0.97
55 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.36
Consensus pattern (54 bp):
TTAAGGGATTTTACGAATCTCGCAATCCGCTAATTTAAGATCACAACCTTCTAC
Found at i:79413292 original size:54 final size:54
Alignment explanation
Indices: 79413233--79413522 Score: 266
Period size: 54 Copynumber: 5.4 Consensus size: 54
79413223 GAGCTTCAGT
** * * * * *
79413233 TGATTTACAATCACAACCTTTTACTTACAGGATTTTTCGAATCTCAAGGTCTAC
1 TGATTTATGATCACGACCTTTTACTTACAGGATTTTACAAATCTCGAGGTCCAC
* * *
79413287 TGATTTATGATCACGACCTTGTACTTACTA-GATTTTACAAATCTCGTGGTCCGC
1 TGATTTATGATCACGACCTTTTACTTAC-AGGATTTTACAAATCTCGAGGTCCAC
* * *
79413341 TGATTGATGATCACAACCTTTTACTTACAGGATTTTACAAATCTCGTGGTCCAC
1 TGATTTATGATCACGACCTTTTACTTACAGGATTTTACAAATCTCGAGGTCCAC
* * * **
79413395 -CAGTTTACGATCATGACCTTTTACTTA-AGGAATTTTACAAATCTCGTA-GTCTGC
1 TGA-TTTATGATCACGACCTTTTACTTACAGG-ATTTTACAAATCTCG-AGGTCCAC
* * * * ** * *
79413449 TAATTTATGATCACGACCTTTTATTTATAGGATTTTACGAATCTCCTGGCCCGC
1 TGATTTATGATCACGACCTTTTACTTACAGGATTTTACAAATCTCGAGGTCCAC
79413503 TGATTTACT-ATCACGACCTT
1 TGATTTA-TGATCACGACCTT
79413523 CTAATGATGT
Statistics
Matches: 195, Mismatches: 32, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
53 5 0.03
54 184 0.94
55 6 0.03
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (54 bp):
TGATTTATGATCACGACCTTTTACTTACAGGATTTTACAAATCTCGAGGTCCAC
Found at i:79413430 original size:108 final size:107
Alignment explanation
Indices: 79413242--79413522 Score: 314
Period size: 108 Copynumber: 2.6 Consensus size: 107
79413232 TTGATTTACA
* * * *
79413242 ATCACAACCTTTTACTTACAGGATTTTTCGAATCTCAAGGTCTACTGATTTATGATCACGACCTT
1 ATCACAACCTTTTACTTACAGGATTTTACGAATCTCAAGGTCCACAGATTTACGATCACGACCTT
* *
79413307 GTACTTACTAGATTTTACAAATCTCGTGGTCCGCTGATTGATG
66 GTACTTAC-AGATTTTACAAATCTCGTAGTCCGCTAATTGATG
* ** *
79413350 ATCACAACCTTTTACTTACAGGATTTTACAAATCTCGTGGTCCACCAG-TTTACGATCATGACCT
1 ATCACAACCTTTTACTTACAGGATTTTACGAATCTCAAGGTCCA-CAGATTTACGATCACGACCT
* * *
79413414 TTTACTTA-AGGAATTTTACAAATCTCGTAGTCTGCTAATTTATG
65 TGTACTTACA-G-ATTTTACAAATCTCGTAGTCCGCTAATTGATG
* * * ** * * * *
79413458 ATCACGACCTTTTATTTATAGGATTTTACGAATCTCCTGGCCCGCTGATTTACTATCACGACCTT
1 ATCACAACCTTTTACTTACAGGATTTTACGAATCTCAAGGTCCACAGATTTACGATCACGACCTT
79413523 CTAATGATGT
Statistics
Matches: 146, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
106 1 0.01
107 3 0.02
108 140 0.96
109 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.37
Consensus pattern (107 bp):
ATCACAACCTTTTACTTACAGGATTTTACGAATCTCAAGGTCCACAGATTTACGATCACGACCTT
GTACTTACAGATTTTACAAATCTCGTAGTCCGCTAATTGATG
Found at i:79414028 original size:564 final size:564
Alignment explanation
Indices: 79412970--79414073 Score: 1179
Period size: 564 Copynumber: 2.0 Consensus size: 564
79412960 TACTTACGTG
** * * * **
79412970 ATTTTATGAATCTATTCATGTTCAGGAAGAACTCAAAACTAACCACTCTACCATTCAGATTAAGT
1 ATTTTATGAATCTAGGCATGTTCAAGAAGAAATAAAAACTAACCACTCTACCATTCAGAGCAAGT
* * *
79413035 TAGATGTTAGAGATTATGCATATAGCCATGTTGAGGAAGAACTCAAAACTGACCTTGAAAAAAGA
66 TAGATGCTAGAGATGATGAATATAGCCATGTTGAGGAAGAACTCAAAACTGACCTTGAAAAAAGA
* * * *
79413100 AGAATAAATGAATCAATTTTTTTTACAATTCCTTCGTGTGGCTAAAGCTAGTTCTCTTCACCATA
131 AGAATAAAGGAATCAATATTTGTTACAATTCCTTCGTGAGGCTAAAGCTAGTTCTCTTCACCATA
* * * * *
79413165 CTTCTGAATGAAGCTTGAAATAGATTGATCTTCTCAGAAAAACAAGTAATTTTCTGAAGAGCTTC
196 CGTCTGAATGAAGCTTGAAATAGATTGATCTTCTCAAAAAAAAAAGTAACTTTCTGAAAAGCTTC
* * *
79413230 AGTTGATTTACAATCACAACCTTTTACTTACAGGATTTTTCGAATCTCAAGGTCTACTGATTTAT
261 AGTTGATTTACAATCACAACCTTTTACTTACAGGATTTTACGAATCTCAAGGTCTACTAATTTAC
** **** *
79413295 GATCACGACCTTGTACTTACTAGATTTTACAAATCTCGTGGTCCGCTGATTGATGATCACAACCT
326 GATCACGACCTTCAACTTACTAGATTTTACAAATCTCGCAAACCGCTAATTGATGATCACAACCT
* * * * * * * *
79413360 TTTACTTACAGGATTTTACAAATCTCGTGGTCCACCAGTTTACGATCATGACCTTTTACTTAAGG
391 TCTACTTACAGGATTTTACAAATCTCATAGTCCACCAATTCACGACCACGACCTTCTACTTAAGG
* * * * *
79413425 AATTTTACAAATCTCGTAGTCTGCTAATTTATGATCACGACCTTTTATTTATAG-GATTTTACGA
456 AATTTTACAAATCTCGCAGTCTACTAATTTATGATCACGACCTTCTACTTA-AGAAATTTTACGA
79413489 ATCTCCTGGCCCGCTGATTTACTATCACGACCTTCTAATGATGTA
520 ATCTCCTGGCCCGCTGATTTACTATCACGACCTTCTAATGATGTA
* * * * * *
79413534 ATTTTATGAATCTAGGCGTGTTGAAGAAGAAATAAAAATTGACCTCTCTACCCTTCAGAGCAAGT
1 ATTTTATGAATCTAGGCATGTTCAAGAAGAAATAAAAACTAACCACTCTACCATTCAGAGCAAGT
* * * * ** *
79413599 TAGATGCTAGAGATGATTAATATAGGCGTGTTGAGGAAGAACTCAAAACTGATCTTGAAGGAAGG
66 TAGATGCTAGAGATGATGAATATAGCCATGTTGAGGAAGAACTCAAAACTGACCTTGAAAAAAGA
* * * * * *
79413664 AGATTAGAGGAATTAA-ATTTGTTAC-CTTGCCTTTGTGAGGCTGAAGCTAGTTCTCTTCACCAT
131 AGAATAAAGGAATCAATATTTGTTACAATT-CCTTCGTGAGGCTAAAGCTAGTTCTCTTCACCAT
* * *
79413727 ACGTCTGAAATGAGGCTTGAAATGGATTG-TTTTGCT-AAAAAAAAATAGGT-ACTTTCTGAAAA
195 ACGTCTG-AATGAAGCTTGAAATAGATTGATCTT-CTCAAAAAAAAA-A-GTAACTTTCTGAAAA
* * * * * * *
79413789 GCTTCAGTTGATTTACAATCACGACCTTTTATTTA-TGGCTTATTACGAATCTCGAGGTTTGCTA
256 GCTTCAGTTGATTTACAATCACAACCTTTTACTTACAGGATT-TTACGAATCTCAAGGTCTACTA
* * * *
79413853 ATTTACGATGACGACCTTCAACTTA-TGGGATTTTACAAATCTCGCAAACTGCTAATTTATGATC
320 ATTTACGATCACGACCTTCAACTTACT-AGATTTTACAAATCTCGCAAACCGCTAATTGATGATC
* ** ** * * * * *
79413917 A-AGGCCTTCTACTT-TTGAGATTTTATGAATCTCATAGTCCGCTAATTCATGACCGCGATCTTC
384 ACA-ACCTTCTACTTACAG-GATTTTACAAATCTCATAGTCCACCAATTCACGACCACGACCTTC
* * * * * *
79413980 TACTTACGGGATTTTACTAATCTTGCGGTGC-ACTGATTTACT-ATCACGACCTTCTACTTAAGA
447 TACTTAAGGAATTTTACAAATCTCGCAGT-CTACTAATTTA-TGATCACGACCTTCTACTTAAGA
* *
79414043 AATTTTACGAATCTCGTGGTCCGCTGATTTA
510 AATTTTACGAATCTCCTGGCCCGCTGATTTA
79414074 AGATTATGAC
Statistics
Matches: 435, Mismatches: 93, Indels: 24
0.79 0.17 0.04
Matches are distributed among these distances:
562 2 0.00
563 63 0.14
564 366 0.84
565 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.34
Consensus pattern (564 bp):
ATTTTATGAATCTAGGCATGTTCAAGAAGAAATAAAAACTAACCACTCTACCATTCAGAGCAAGT
TAGATGCTAGAGATGATGAATATAGCCATGTTGAGGAAGAACTCAAAACTGACCTTGAAAAAAGA
AGAATAAAGGAATCAATATTTGTTACAATTCCTTCGTGAGGCTAAAGCTAGTTCTCTTCACCATA
CGTCTGAATGAAGCTTGAAATAGATTGATCTTCTCAAAAAAAAAAGTAACTTTCTGAAAAGCTTC
AGTTGATTTACAATCACAACCTTTTACTTACAGGATTTTACGAATCTCAAGGTCTACTAATTTAC
GATCACGACCTTCAACTTACTAGATTTTACAAATCTCGCAAACCGCTAATTGATGATCACAACCT
TCTACTTACAGGATTTTACAAATCTCATAGTCCACCAATTCACGACCACGACCTTCTACTTAAGG
AATTTTACAAATCTCGCAGTCTACTAATTTATGATCACGACCTTCTACTTAAGAAATTTTACGAA
TCTCCTGGCCCGCTGATTTACTATCACGACCTTCTAATGATGTA
Found at i:79414034 original size:54 final size:53
Alignment explanation
Indices: 79413976--79414214 Score: 202
Period size: 54 Copynumber: 4.5 Consensus size: 53
79413966 TGACCGCGAT
*
79413976 CTTCTACTTACGGGATTTTACTAATCTTGCGGTGCACTGATTTACT-ATCACGAC
1 CTTCTACTTACGGGATTTTACTAATCTCGCGGT-CACTGATTTA-TGATCACGAC
* ** * * * * * *
79414030 CTTCTACTTAAGAAATTTTACGAATCTCGTGGTCCGCTGATTTAAGATTATGAC
1 CTTCTACTTACGGGATTTTACTAATCTCGCGGT-CACTGATTTATGATCACGAC
* * *
79414084 CTTCTACTTATGGGATTTTACTAATCT--C-AT-ATCTGATTTATGATCATGAC
1 CTTCTACTTACGGGATTTTACTAATCTCGCGGTCA-CTGATTTATGATCACGAC
* * *
79414134 CTTCTACTTACGGGATTTTA-TGAATCTCGCGGTTCATTGCTTTATGATCACAAC
1 CTTCTACTTACGGGATTTTACT-AATCTCGCGG-TCACTGATTTATGATCACGAC
* ** *
79414188 CTTCTACTAACGTAATTTTACGAATCT
1 CTTCTACTTACGGGATTTTACTAATCT
79414215 AGGCGTGTTA
Statistics
Matches: 146, Mismatches: 30, Indels: 18
0.75 0.15 0.09
Matches are distributed among these distances:
49 1 0.01
50 40 0.27
51 1 0.01
52 1 0.01
54 102 0.70
55 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (53 bp):
CTTCTACTTACGGGATTTTACTAATCTCGCGGTCACTGATTTATGATCACGAC
Found at i:79414190 original size:104 final size:107
Alignment explanation
Indices: 79413976--79414214 Score: 236
Period size: 104 Copynumber: 2.3 Consensus size: 107
79413966 TGACCGCGAT
*
79413976 CTTCTACTTACGGGATTTTACTAATCTTGCGGTGCACTGATTTACTATCACGACCTTCTACTTAA
1 CTTCTACTTACGGGATTTTACTAATCTTGCGAT-CACTGATTTACTATCACGACCTTCTACTTAA
* * * **
79414041 GAAATTTTACGAATCTCGTGGTCCGCTGATTTAAGATTATGAC
65 GAAATTTTACGAATCTCGCGGTCCACTGATTTAAGATCACAAC
* *
79414084 CTTCTACTTATGGGATTTTACTAATC-T-C-AT-ATCTGATTTA-TGATCATGACCTTCTACTTA
1 CTTCTACTTACGGGATTTTACTAATCTTGCGATCA-CTGATTTACT-ATCACGACCTTCTACTTA
* ** * * * * *
79414144 CGGGATTTTATGAATCTCGCGGTTCATTGCTTTATGATCACAAC
64 AGAAATTTTACGAATCTCGCGGTCCACTGATTTAAGATCACAAC
* ** *
79414188 CTTCTACTAACGTAATTTTACGAATCT
1 CTTCTACTTACGGGATTTTACTAATCT
79414215 AGGCGTGTTA
Statistics
Matches: 107, Mismatches: 21, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
103 2 0.02
104 77 0.72
105 1 0.01
106 1 0.01
107 1 0.01
108 25 0.23
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (107 bp):
CTTCTACTTACGGGATTTTACTAATCTTGCGATCACTGATTTACTATCACGACCTTCTACTTAAG
AAATTTTACGAATCTCGCGGTCCACTGATTTAAGATCACAAC
Found at i:79417607 original size:33 final size:33
Alignment explanation
Indices: 79417569--79417633 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
79417559 TGGCAAAGTG
* *
79417569 TTAAATG-TAAGACCATAGCCTAGGTTATGGCAT
1 TTAAATGAAAAGACCATA-ACTAGGTTATGGCAT
79417602 TTAAATGAAAAGACCATAACTAGGTTATGGCA
1 TTAAATGAAAAGACCATAACTAGGTTATGGCA
79417634 CCGTGAACGT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 20 0.69
34 9 0.31
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (33 bp):
TTAAATGAAAAGACCATAACTAGGTTATGGCAT
Done.