Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 241 of 333
Found at i:79419458 original size:54 final size:54
Alignment explanation
Indices: 79419384--79419504 Score: 152
Period size: 54 Copynumber: 2.2 Consensus size: 54
79419374 ATTTATAATC
** * * * *
79419384 ACGACCTTTTACTTTTAGGATTTTACGAATCTCACGATCTGTTGATTTACGATG
1 ACGACCTTTTACTTACAGGATTTTACGAAACTCACAATCAGCTGATTTACGATG
* * * *
79419438 ATGACCTTCTACTTACAGGATTTTACGAAACTCTCAATCAGCTGATTTATGATG
1 ACGACCTTTTACTTACAGGATTTTACGAAACTCACAATCAGCTGATTTACGATG
79419492 ACGACCTTTTACT
1 ACGACCTTTTACT
79419505 AGATTATACG
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (54 bp):
ACGACCTTTTACTTACAGGATTTTACGAAACTCACAATCAGCTGATTTACGATG
Found at i:79420422 original size:54 final size:54
Alignment explanation
Indices: 79420334--79420756 Score: 393
Period size: 54 Copynumber: 7.8 Consensus size: 54
79420324 AGAGCTACAG
* * * * *
79420334 TTGATTTACAATCACGACATTTTAGTTACAGGATTTTATGAATCTCATGGTCCA
1 TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCACGGTCCA
* * * * *
79420388 TTAATTTACGATCATGACCTTCTACTTACAGGATTTTACGAATCTCGCGATCCA
1 TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCACGGTCCA
* * * * ** **
79420442 TTGATTTACGATCACAACCTTCTATTTATAGGATTTTACGAATCTCGTGGTCTG
1 TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCACGGTCCA
* * * * * * * *
79420496 TTGATTTACGATCACAACTTTCTACTTACGGGGTTTTATTAATCTCGCGATCCT
1 TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCACGGTCCA
* * ** * * *
79420550 TTGATTTACGATCACGACCTTTTACTTACTGGATTTTAAAAATTTCATGGGCCA
1 TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCACGGTCCA
* * * *
79420604 TTTATTTACAATCACGACATTCTACTTAC-GAGATTTTATGAATCTCACGGTTCA
1 TTGATTTACGATCACGACCTTCTACTTACAG-GATTTTATGAATCTCACGGTCCA
* **
79420658 TTGATTTACGATCACGACCTTCTACTTACGGGATTTTATGAATCT-AGCGGTCTG
1 TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCA-CGGTCCA
* * * * *
79420712 CTGATTTACAATCATGACCTTCTACATGC-GTGATTTTATGAATCT
1 TTGATTTACGATCACGACCTTCTACTTACAG-GATTTTATGAATCT
79420757 TGCGGCCCGC
Statistics
Matches: 301, Mismatches: 64, Indels: 8
0.81 0.17 0.02
Matches are distributed among these distances:
53 3 0.01
54 297 0.99
55 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (54 bp):
TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCACGGTCCA
Found at i:79420769 original size:54 final size:54
Alignment explanation
Indices: 79420335--79420999 Score: 285
Period size: 54 Copynumber: 12.3 Consensus size: 54
79420325 GAGCTACAGT
* * * * **
79420335 TGATTTACAATCACGACATTTTAGTTAC-AGGATTTTATGAATCTCA-TGGTCCAT
1 TGATTTACAATCACGACCTTCTACTTACGA-GATTTTATGAATCT-AGCGGTCCGC
* * * * * * **
79420389 TAATTTACGATCATGACCTTCTACTTAC-AGGATTTTACGAATCTCGCGATCCAT
1 TGATTTACAATCACGACCTTCTACTTACGA-GATTTTATGAATCTAGCGGTCCGC
* * * * * * * * *
79420443 TGATTTACGATCACAACCTTCTATTTA-TAGGATTTTACGAATCTCGTGGTCTGT
1 TGATTTACAATCACGACCTTCTACTTACGA-GATTTTATGAATCTAGCGGTCCGC
* * * * * * * * **
79420497 TGATTTACGATCACAACTTTCTACTTACGGGGTTTTATTAATCTCGCGATCCTT
1 TGATTTACAATCACGACCTTCTACTTACGAGATTTTATGAATCTAGCGGTCCGC
* * ** * **
79420551 TGATTTACGATCACGACCTTTTACTTACTG-GATTTTAAAAATTTCATG-GG-CCAT
1 TGATTTACAATCACGACCTTCTACTTAC-GAGATTTTATGAATCT-A-GCGGTCCGC
* * * **
79420605 TTATTTACAATCACGACATTCTACTTACGAGATTTTATGAATCTCA-CGGTTCAT
1 TGATTTACAATCACGACCTTCTACTTACGAGATTTTATGAATCT-AGCGGTCCGC
* * *
79420659 TGATTTACGATCACGACCTTCTACTTACGGGATTTTATGAATCTAGCGGTCTGC
1 TGATTTACAATCACGACCTTCTACTTACGAGATTTTATGAATCTAGCGGTCCGC
* * * * * *
79420713 TGATTTACAATCATGACCTTCTACATGCGTGATTTTATGAATCTTGCGGCCCGC
1 TGATTTACAATCACGACCTTCTACTTACGAGATTTTATGAATCTAGCGGTCCGC
*** * * * ** * * **
79420767 TGATTTATGTTGACGACCTTCT-CTTTATGGGA-TTTGCGAGTCTCA-CAGTATGC
1 TGATTTACAATCACGACCTTCTAC-TTACGAGATTTTATGAATCT-AGCGGTCCGC
** * * * * * * ** *
79420820 TGATTTAGGATCATGGCCTTCTACTTACGTTG-TTTTACGAATCTTGTGGTATGT
1 TGATTTACAATCACGACCTTCTACTTACG-AGATTTTATGAATCTAGCGGTCCGC
* * * * * *
79420874 TGATTTACAATCATGACGTTTTACTTACGAGAATTTATGAAACTCA-TGGTCCGC
1 TGATTTACAATCACGACCTTCTACTTACGAGATTTTATGAATCT-AGCGGTCCGC
* * * * * * * * **
79420928 TGATTGACAATCATGACTTTCTATTTACTATATTTTACGAATCTTGCGGTCCTT
1 TGATTTACAATCACGACCTTCTACTTACGAGATTTTATGAATCTAGCGGTCCGC
79420982 TGAATTTACAATCACGAC
1 TG-ATTTACAATCACGAC
79421000 TTGCTGCATA
Statistics
Matches: 470, Mismatches: 121, Indels: 39
0.75 0.19 0.06
Matches are distributed among these distances:
53 39 0.08
54 415 0.88
55 15 0.03
56 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (54 bp):
TGATTTACAATCACGACCTTCTACTTACGAGATTTTATGAATCTAGCGGTCCGC
Found at i:79420771 original size:108 final size:108
Alignment explanation
Indices: 79420334--79420999 Score: 471
Period size: 108 Copynumber: 6.2 Consensus size: 108
79420324 AGAGCTACAG
* * * * * *** * *
79420334 TTGATTTACAATCACGACATTTTAGTTACAGGATTTTATGAATCTCATGGTCCATTAATTTACGA
1 TTGATTTACGATCACGACCTTCTACTTACGGGATTTTATGAATCTCATGGTCTGCTGATTTACAA
* *
79420399 TCATGACCTTCTACTTACAG-GATTTTACGAATCTCGCGATCCA
66 TCATGACCTTCTACTTAC-GTGATTTTATGAATCTCGCGGTCCA
* * ** * * * *
79420442 TTGATTTACGATCACAACCTTCTATTTATAGGATTTTACGAATCTCGTGGTCTGTTGATTTACGA
1 TTGATTTACGATCACGACCTTCTACTTACGGGATTTTATGAATCTCATGGTCTGCTGATTTACAA
** * * * * * *
79420507 TCACAACTTTCTACTTACGGGGTTTTATTAATCTCGCGATCCT
66 TCATGACCTTCTACTTACGTGATTTTATGAATCTCGCGGTCCA
* * ** * * *** *
79420550 TTGATTTACGATCACGACCTTTTACTTACTGGATTTTAAAAATTTCATGGGCCATTTATTTACAA
1 TTGATTTACGATCACGACCTTCTACTTACGGGATTTTATGAATCTCATGGTCTGCTGATTTACAA
* * * * *
79420615 TCACGACATTCTACTTACGAGATTTTATGAATCTCACGGTTCA
66 TCATGACCTTCTACTTACGTGATTTTATGAATCTCGCGGTCCA
*
79420658 TTGATTTACGATCACGACCTTCTACTTACGGGATTTTATGAATCT-AGCGGTCTGCTGATTTACA
1 TTGATTTACGATCACGACCTTCTACTTACGGGATTTTATGAATCTCA-TGGTCTGCTGATTTACA
* * * * *
79420722 ATCATGACCTTCTACATGCGTGATTTTATGAATCTTGCGGCCCG
65 ATCATGACCTTCTACTTACGTGATTTTATGAATCTCGCGGTCCA
* * * * * ** * ** * **
79420766 CTGATTTATGTTGACGACCTTCT-CTTTATGGGA-TTTGCGAGTCTCACAGTATGCTGATTTAGG
1 TTGATTTACGATCACGACCTTCTAC-TTACGGGATTTTATGAATCTCATGGTCTGCTGATTTACA
* * * * ***
79420829 ATCATGGCCTTCTACTTACGTTG-TTTTACGAATCTTGTGGTATG
65 ATCATGACCTTCTACTTACG-TGATTTTATGAATCTCGCGGTCCA
* * * * * * * * *
79420873 TTGATTTACAATCATGACGTTTTACTTACGAGAATTTATGAAACTCATGGTCCGCTGATTGACAA
1 TTGATTTACGATCACGACCTTCTACTTACGGGATTTTATGAATCTCATGGTCTGCTGATTTACAA
* * * * * *
79420938 TCATGACTTTCTATTTAC-TATATTTTACGAATCTTGCGGTCCT
66 TCATGACCTTCTACTTACGT-GATTTTATGAATCTCGCGGTCCA
*
79420981 TTGAATTTACAATCACGAC
1 TTG-ATTTACGATCACGAC
79421000 TTGCTGCATA
Statistics
Matches: 436, Mismatches: 112, Indels: 19
0.77 0.20 0.03
Matches are distributed among these distances:
106 1 0.00
107 78 0.18
108 343 0.79
109 14 0.03
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (108 bp):
TTGATTTACGATCACGACCTTCTACTTACGGGATTTTATGAATCTCATGGTCTGCTGATTTACAA
TCATGACCTTCTACTTACGTGATTTTATGAATCTCGCGGTCCA
Found at i:79426775 original size:22 final size:22
Alignment explanation
Indices: 79426749--79426793 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
79426739 TTTTAATAAA
79426749 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* * *
79426771 AAAATATTTATAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
79426793 A
1 A
79426794 CACTCCCCCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:79431371 original size:22 final size:22
Alignment explanation
Indices: 79431343--79431387 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
79431333 TTAATAAAAA
79431343 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
79431365 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
79431387 A
1 A
79431388 CAATTCTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:79433885 original size:8 final size:8
Alignment explanation
Indices: 79433872--79433898 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
79433862 GGTATTTTAA
79433872 AAAATTTT
1 AAAATTTT
79433880 AAAATTTT
1 AAAATTTT
79433888 AAAATTTT
1 AAAATTTT
79433896 AAA
1 AAA
79433899 TAAGTAAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (8 bp):
AAAATTTT
Found at i:79434839 original size:12 final size:14
Alignment explanation
Indices: 79434821--79434854 Score: 54
Period size: 12 Copynumber: 2.6 Consensus size: 14
79434811 AAATTGGAAT
79434821 TTATTTTTAAA-TA
1 TTATTTTTAAATTA
79434834 -TATTTTTAAATTA
1 TTATTTTTAAATTA
79434847 TTATTTTT
1 TTATTTTT
79434855 TGAAATTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 10 0.53
13 2 0.11
14 7 0.37
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TTATTTTTAAATTA
Found at i:79434970 original size:19 final size:19
Alignment explanation
Indices: 79434946--79434985 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
79434936 CATTGTGTAC
79434946 TTAAAAAAAAATCCTAAAA
1 TTAAAAAAAAATCCTAAAA
* *
79434965 TTAAAAGAAAATTCTAAAA
1 TTAAAAAAAAATCCTAAAA
79434984 TT
1 TT
79434986 CTAAAAATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.62, C:0.07, G:0.03, T:0.28
Consensus pattern (19 bp):
TTAAAAAAAAATCCTAAAA
Found at i:79439084 original size:24 final size:24
Alignment explanation
Indices: 79439057--79439108 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
79439047 TTAGTAAGTC
*
79439057 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
79439081 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
79439105 AAAT
1 AAAT
79439109 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:79440104 original size:9 final size:10
Alignment explanation
Indices: 79440077--79440102 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
79440067 AAAATTTTTT
79440077 AAAAAAATTC
1 AAAAAAATTC
79440087 AAAAAAATTC
1 AAAAAAATTC
79440097 AAAAAA
1 AAAAAA
79440103 TTATTTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:79441391 original size:47 final size:48
Alignment explanation
Indices: 79441335--79441497 Score: 148
Period size: 58 Copynumber: 3.2 Consensus size: 48
79441325 TTATTTTTAT
79441335 TTTTATTTTAGTTAATACCATTATTAAGTTGTTAATATTTTTATATAC
1 TTTTATTTTAGTTAATACCATTATTAAGTTGTTAATATTTTTATATAC
* * * * * *
79441383 TTTTTTTTAAAAAAATTATGTTTATATCCTTTTTTAAATTGTTAATATTATTATATA-
1 -TTTTATT-------TTA-GTTAATA-CCATTATTAAGTTGTTAATATTTTTATATAC
* *
79441440 TTTTATTTTTGTTAATATCATTATTAAGTTGTTAATATTTTTATATAC
1 TTTTATTTTAGTTAATACCATTATTAAGTTGTTAATATTTTTATATAC
*
79441488 TTTTTTTTTA
1 TTTTATTTTA
79441498 AAAAATTTAT
Statistics
Matches: 88, Mismatches: 16, Indels: 21
0.70 0.13 0.17
Matches are distributed among these distances:
47 25 0.28
48 14 0.16
49 8 0.09
56 9 0.10
57 6 0.07
58 26 0.30
ACGTcount: A:0.31, C:0.04, G:0.05, T:0.60
Consensus pattern (48 bp):
TTTTATTTTAGTTAATACCATTATTAAGTTGTTAATATTTTTATATAC
Found at i:79441425 original size:58 final size:56
Alignment explanation
Indices: 79441358--79441542 Score: 199
Period size: 58 Copynumber: 3.4 Consensus size: 56
79441348 AATACCATTA
* *
79441358 TTAAGTTGTTAATATTTTTATATACTTTTTTTTAAAAAAATTATGTTTATATCCTTTT
1 TTAAATTGTTAATATTATTATATACTTTTTTTT-AAAAAATTATGTTTATATCC-TTT
* * * *
79441416 TTAAATTGTTAATATTATTATATA--TTTTATT------TT-TGTTAATATCATTA
1 TTAAATTGTTAATATTATTATATACTTTTTTTTAAAAAATTATGTTTATATCCTTT
* *
79441463 TTAAGTTGTTAATATTTTTATATACTTTTTTTTTAAAAAATTTATGTTTATATCCTTT
1 TTAAATTGTTAATATTATTATATAC-TTTTTTTTAAAAAA-TTATGTTTATATCCTTT
79441521 TTAAATTGTTAATATTATTATA
1 TTAAATTGTTAATATTATTATA
79441543 GATTTTATTT
Statistics
Matches: 102, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
47 24 0.24
48 9 0.09
49 2 0.02
50 6 0.06
56 6 0.06
57 2 0.02
58 53 0.52
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.59
Consensus pattern (56 bp):
TTAAATTGTTAATATTATTATATACTTTTTTTTAAAAAATTATGTTTATATCCTTT
Found at i:79441503 original size:105 final size:105
Alignment explanation
Indices: 79441321--79441588 Score: 441
Period size: 105 Copynumber: 2.5 Consensus size: 105
79441311 TGGTAAAAAA
* * *
79441321 AATATTATT-TTTATTTTTATTTTAGTTAATACCATTATTAAGTTGTTAATATTTTTATATACTT
1 AATATTATTATATA-TTTTATTTTTGTTAATATCATTATTAAGTTGTTAATATTTTTATATACTT
79441385 TTTTTTAAAAAAA-TTATGTTTATATCCTTTTTTAAATTGTT
65 TTTTTTAAAAAAATTTATGTTTATATCC-TTTTTAAATTGTT
79441426 AATATTATTATATATTTTATTTTTGTTAATATCATTATTAAGTTGTTAATATTTTTATATACTTT
1 AATATTATTATATATTTTATTTTTGTTAATATCATTATTAAGTTGTTAATATTTTTATATACTTT
*
79441491 TTTTTTAAAAAATTTATGTTTATATCCTTTTTAAATTGTT
66 TTTTTAAAAAAATTTATGTTTATATCCTTTTTAAATTGTT
* *
79441531 AATATTATTATAGATTTTATTTTTGTTAATATCATTATTATGTTGTTAATAATTTTTA
1 AATATTATTATATATTTTATTTTTGTTAATATCATTATTAAGTTGTTAAT-ATTTTTA
79441589 ATTTTTATGT
Statistics
Matches: 154, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
105 130 0.84
106 24 0.16
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.59
Consensus pattern (105 bp):
AATATTATTATATATTTTATTTTTGTTAATATCATTATTAAGTTGTTAATATTTTTATATACTTT
TTTTTAAAAAAATTTATGTTTATATCCTTTTTAAATTGTT
Found at i:79441554 original size:58 final size:58
Alignment explanation
Indices: 79441444--79441554 Score: 143
Period size: 58 Copynumber: 1.9 Consensus size: 58
79441434 TATATATTTT
* * * *
79441444 ATTTTTGTTAATATCATTATTAAGTTGTTAATATTTTTATATACTTTTTTTTTAAAAA
1 ATTTATGTTAATATCATTATTAAATTGTTAATATTATTATAGACTTTTTTTTTAAAAA
* * *
79441502 ATTTATGTTTATATCCTTTTTAAATTGTTAATATTATTATAGA-TTTTATTTTT
1 ATTTATGTTAATATCATTATTAAATTGTTAATATTATTATAGACTTTT-TTTTT
79441555 GTTAATATCA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
57 4 0.09
58 41 0.91
ACGTcount: A:0.31, C:0.04, G:0.05, T:0.60
Consensus pattern (58 bp):
ATTTATGTTAATATCATTATTAAATTGTTAATATTATTATAGACTTTTTTTTTAAAAA
Found at i:79447769 original size:13 final size:13
Alignment explanation
Indices: 79447751--79447776 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79447741 TGTTTTCTCC
79447751 AAAATGAAAATGA
1 AAAATGAAAATGA
79447764 AAAATGAAAATGA
1 AAAATGAAAATGA
79447777 CTTGGAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (13 bp):
AAAATGAAAATGA
Found at i:79450715 original size:196 final size:197
Alignment explanation
Indices: 79450271--79450876 Score: 615
Period size: 196 Copynumber: 3.0 Consensus size: 197
79450261 AAGAAGGTAG
* * * *
79450271 AACCTTTGTAGAGTTGTAGAAGTTTATTTCCATTAGAAAAATAATATCGTAGTTTATCTAGGATA
1 AACCTTTGTAGAGTTGTAGAAGTTTATTTTCACTAGAAAAACAATATCCTAGTTTATCTAGGATA
* * * * * * *
79450336 TAGAGGGTGACAACCCTAGTTAATGATACTAGGGTTTTTCTGTCTCACCTCCTTATATAAGGGGT
66 -AAAGGG-G-CGA--C-----AATGATACTAGGGTTTGTCTGTCCCACCTCCTTACATAAGAGAT
* * * * *
79450401 TTTGGGTCTCTCTCACATCGAATCCAATTACGAGTACTTCTTCGGCTTTTTGGACCTAGTACTCT
121 TTTAGGTCTCTCTCACATCGAATCCAATTAAGAGTACTTCTTAGACTTTTTGGACCCAGTACTCT
79450466 ATAATATGATCC
186 ATAATATGATCC
*
79450478 AACCTTTATAGAGTTGTAGAAGTTTATTTTCACTAGAAAAACAATATCCTAGTTTATCTAGGATA
1 AACCTTTGTAGAGTTGTAGAAGTTTATTTTCACTAGAAAAACAATATCCTAGTTTATCTAGGATA
* * *
79450543 AAAGGGGCGACAATGATAGTAGGGTTTGT-TGTCCCACCTCCTTACATGAGAGATTTTAGGTCTT
66 AAAGGGGCGACAATGATACTAGGGTTTGTCTGTCCCACCTCCTTACATAAGAGATTTTAGGTCTC
* * *
79450607 TCTTACATCG-AGCTCAATTAAGAGTACTTCTTAGACTTTTTGGACCCAGTACTCTGTAATATGA
131 TCTCACATCGAATC-CAATTAAGAGTACTTCTTAGACTTTTTGGACCCAGTACTCTATAATATGA
79450671 TCC
195 TCC
**
79450674 AACCTTTGTAGAGTCATAGAAGTTTATTTTCACTAGAAAAACAATATCCTAGTTTATCTAGGATA
1 AACCTTTGTAGAGTTGTAGAAGTTTATTTTCACTAGAAAAACAATATCCTAGTTTATCTAGGATA
* * * * ** * * * *
79450739 TAGAGGGCGACAACCCTAGTTAATGATACTAAGGTTTTGT-TGTCCCATCTCAGTATATGAGGGG
66 -AAAGGG-G-CGA--C-----AATGATACT-AGGGTTTGTCTGTCCCACCTCCTTACATAAGAGA
* * * * * * *
79450803 TTTTAGGTCTCTCTCACATTGAGTCCAATTACGAGTACTTCTTGGGCTTTTTAGACCCAATACTC
120 TTTTAGGTCTCTCTCACATCGAATCCAATTAAGAGTACTTCTTAGACTTTTTGGACCCAGTACTC
79450868 TATAATATG
185 TATAATATG
79450877 GTCTAACCCG
Statistics
Matches: 339, Mismatches: 47, Indels: 26
0.82 0.11 0.06
Matches are distributed among these distances:
195 2 0.01
196 147 0.43
197 21 0.06
198 1 0.00
199 2 0.01
201 1 0.00
202 1 0.00
204 2 0.01
205 1 0.00
206 13 0.04
207 147 0.43
208 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (197 bp):
AACCTTTGTAGAGTTGTAGAAGTTTATTTTCACTAGAAAAACAATATCCTAGTTTATCTAGGATA
AAAGGGGCGACAATGATACTAGGGTTTGTCTGTCCCACCTCCTTACATAAGAGATTTTAGGTCTC
TCTCACATCGAATCCAATTAAGAGTACTTCTTAGACTTTTTGGACCCAGTACTCTATAATATGAT
CC
Found at i:79451149 original size:18 final size:18
Alignment explanation
Indices: 79451126--79451160 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
79451116 AGAATTGCAA
*
79451126 GTTTCCATTTTCATTTTC
1 GTTTCCATTTCCATTTTC
79451144 GTTTCCATTTCCATTTT
1 GTTTCCATTTCCATTTT
79451161 GAAAACCTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.23, G:0.06, T:0.60
Consensus pattern (18 bp):
GTTTCCATTTCCATTTTC
Found at i:79457274 original size:18 final size:18
Alignment explanation
Indices: 79457238--79457275 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
79457228 TGATTTTCAG
*
79457238 GAAGATAAACAAAGGGTT
1 GAAGATAAACAAAGAGTT
79457256 GAAGA-AAACAATAGAGTT
1 GAAGATAAACAA-AGAGTT
79457274 GA
1 GA
79457276 GATCTTAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.53, C:0.05, G:0.26, T:0.16
Consensus pattern (18 bp):
GAAGATAAACAAAGAGTT
Found at i:79463362 original size:23 final size:22
Alignment explanation
Indices: 79463321--79463366 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
79463311 TATATCACAT
79463321 ATATAATTTTTAAAATTAATATA
1 ATATAATTTTTAAAATTAA-ATA
*
79463344 ATATAATATTTT-AACTTAAATA
1 ATATAAT-TTTTAAAATTAAATA
79463366 A
1 A
79463367 AAATAGATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 4 0.19
23 13 0.62
24 4 0.19
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (22 bp):
ATATAATTTTTAAAATTAAATA
Found at i:79464826 original size:23 final size:22
Alignment explanation
Indices: 79464808--79464873 Score: 105
Period size: 23 Copynumber: 2.9 Consensus size: 22
79464798 AAATTTTGAT
79464808 TTATTTAGTGATAATATTTAGAA
1 TTATTTAGTGATAATATTTAG-A
*
79464831 TTATTTAGTAATAATATTTAGCA
1 TTATTTAGTGATAATATTTAG-A
79464854 TTATTTAGTGATAATATTTA
1 TTATTTAGTGATAATATTTA
79464874 AGAAAAATCT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.38, C:0.02, G:0.11, T:0.50
Consensus pattern (22 bp):
TTATTTAGTGATAATATTTAGA
Found at i:79464827 original size:13 final size:13
Alignment explanation
Indices: 79464809--79464873 Score: 61
Period size: 13 Copynumber: 5.5 Consensus size: 13
79464799 AATTTTGATT
79464809 TATTTAGTGATAA
1 TATTTAGTGATAA
*
79464822 TATTTA--GA-AT
1 TATTTAGTGATAA
*
79464832 TATTTAGTAATAA
1 TATTTAGTGATAA
*
79464845 TATTTAG-CAT--
1 TATTTAGTGATAA
79464855 TATTTAGTGATAA
1 TATTTAGTGATAA
79464868 TATTTA
1 TATTTA
79464874 AGAAAAATCT
Statistics
Matches: 41, Mismatches: 5, Indels: 12
0.71 0.09 0.21
Matches are distributed among these distances:
10 14 0.34
11 4 0.10
12 3 0.07
13 20 0.49
ACGTcount: A:0.38, C:0.02, G:0.11, T:0.49
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:79467845 original size:47 final size:45
Alignment explanation
Indices: 79467777--79468136 Score: 251
Period size: 47 Copynumber: 7.7 Consensus size: 45
79467767 TGATTTGTGC
* * *
79467777 GCCAGTGTAAGACATGTCTGGGAAATGCCTCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GATGAGA
* * * * *
79467823 GCCAGTGTAATACCATGTCTGGGACATGGCGTC-GACATCCAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--CAGATGAGA
* * * * * *
79467871 GCTAGTGTAAGACATGTCTGGGACATGCGTCAGCCATACTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GATGAGA
* *
79467917 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACAGATGAGA
* *
79467965 GCCAGTGTAAGATATGTCTGGGACATGCATCGGCATCGACAGA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC--C-ACAGATGAGA
* * * * * * * *
79468012 GCTAGTGTAAGACGTGTCTGGGACACGCATTGGCTA-ATA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATG-AGA
* * * *
79468056 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CAC--AGATGAGA
*
79468104 GCTAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
79468137 AGCAATATAT
Statistics
Matches: 250, Mismatches: 45, Indels: 34
0.76 0.14 0.10
Matches are distributed among these distances:
43 3 0.01
44 31 0.12
45 1 0.00
46 38 0.15
47 92 0.37
48 60 0.24
49 20 0.08
50 5 0.02
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGAGA
Found at i:79467941 original size:94 final size:93
Alignment explanation
Indices: 79467780--79468136 Score: 345
Period size: 94 Copynumber: 3.8 Consensus size: 93
79467770 TTTGTGCGCC
* * * * * *
79467780 AGTGTAAGACATGTCTGGGAAATGCCTCGGCCACATTATGAGAGCCAGTGTAATACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
* * * *
79467845 GACATGGCGTCGACATCCAGACGAGGGCT
66 GACATGGCATCGGCATCAAGA-GAGTGCT
* *
79467874 AGTGTAAGACATGTCTGGGACATGCGTCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
*
79467939 GACATGGCATCGGCA-CAGAGATGAGTGCC
66 GACATGGCATCGGCATCA-AGA-GAGTGCT
* * * *
79467968 AGTGTAAGATATGTCTGGGACATGCATC-GGCATCGAC-A-GAGATAGCTAGTGTAAGA-CGTGT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT--ACTATGAG--AGCCAGTGTAAGACCATGT
* * * *
79468029 CTGGGACA-CGCATTGGC-T-AATAGTTGTGCT
62 CTGGGACATGGCATCGGCATCAAGAG-AGTGCT
* *
79468059 AGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTA-TATGAGAGCTAGTGTAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAG--C-CATACTATGAGAGCCAGTGTAAGACCATGTC
79468123 TGGGACATGGCATC
63 TGGGACATGGCATC
79468137 AGCAATATAT
Statistics
Matches: 218, Mismatches: 30, Indels: 30
0.78 0.11 0.11
Matches are distributed among these distances:
90 1 0.00
91 33 0.15
92 15 0.07
93 28 0.13
94 125 0.57
95 16 0.07
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCATCAAGAGAGTGCT
Found at i:79468136 original size:141 final size:141
Alignment explanation
Indices: 79467777--79468136 Score: 396
Period size: 141 Copynumber: 2.6 Consensus size: 141
79467767 TGATTTGTGC
* * * *
79467777 GCCAGTGTAAGACATGTCTGGGAAATGCCTCGGC-CACAT-TATGAGAGCCAGTGTAATACCATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAC-CGTATATGAGAGCCAGTGTAAGACCATG
* * * *
79467840 TCTGGGACATGGCGTCGACATCCAGACGAGGGCTAGTGTAAGACATGTCTGGGACATGCGTCAGC
65 TCTGGGACATGGCATCGACATCCAGACGAGAGCTAGTGTAAGACATGTCTGGGACACGCATCAGC
*
79467905 CATACTATGATA
130 AATACTATGATA
* * * *
79467917 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAG-AGATGAGTGCCAGTGTAAGA-TAT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACCGTATATGAGAGCCAGTGTAAGACCAT
* * * *
79467980 GTCTGGGACAT-GCATCGGCATCGACAGA-GATAGCTAGTGTAAGACGTGTCTGGGACACGCATT
64 GTCTGGGACATGGCATCGACATC--CAGACGAGAGCTAGTGTAAGACATGTCTGGGACACGCATC
* *
79468043 GGCTAATAGT-TG-T-
127 AGC-AATACTATGATA
* * *
79468056 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTATATGAGAGCTAGTGTAAGACCATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAC-CGTATATGAGAGCCAGTGTAAGACCATG
79468121 TCTGGGACATGGCATC
65 TCTGGGACATGGCATC
79468137 AGCAATATAT
Statistics
Matches: 183, Mismatches: 26, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
137 9 0.05
138 15 0.08
139 28 0.15
140 35 0.19
141 64 0.35
142 31 0.17
143 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (141 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACCGTATATGAGAGCCAGTGTAAGACCATGT
CTGGGACATGGCATCGACATCCAGACGAGAGCTAGTGTAAGACATGTCTGGGACACGCATCAGCA
ATACTATGATA
Found at i:79481609 original size:30 final size:30
Alignment explanation
Indices: 79481547--79481609 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
79481537 ATCGATTTTC
* **
79481547 AAGTATAGTGGCAAAATGGTCATTTTGTCA
1 AAGTATAGGGGCAAAATGGTCATTTTACCA
*
79481577 AAGTCTAGGGGCAAAATGGTCATTTTACCA
1 AAGTATAGGGGCAAAATGGTCATTTTACCA
79481607 AAG
1 AAG
79481610 ATGTGAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.29
Consensus pattern (30 bp):
AAGTATAGGGGCAAAATGGTCATTTTACCA
Found at i:79482022 original size:47 final size:46
Alignment explanation
Indices: 79481949--79482310 Score: 197
Period size: 47 Copynumber: 7.7 Consensus size: 46
79481939 TGATTTGTGT
* *
79481949 GCCAGTGTAAGACATGTCTGGAACATGCCTCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
* * * *
79481995 GCCAGTGTAATACCATGTCTGGGACATGGCATCGG-CATC-TAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CAT-TATGAGA
* * * * * * *
79482043 GCTAGTGTAAGACATGTCTGTGACATGCGT-AGCCATACTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
* * ** *
79482088 ACCAGTGTAAGACCATGTCTGGGACATGGCATC-GACACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACA-TTATGAGA
* * * * *
79482136 GCCAGTGTGAGACATGTCTGGGACATACACCGGCCTCGACA-GA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-C-C-ACATTATGAGA
* * * * *
79482183 GCCAGTGTAAGACGTGT-TGGGGACACGCATCGGCTA-A-TA-GTTGT
1 GCCAGTGTAAGACATGTCT-GGGACATGCATCGGCCACATTATG-AGA
* * * *
79482227 GCTAGTGTAAAACATGTCTGGGACATGCATCAG-CATGCGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCA--CAT-TATGAGA
*
79482275 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
79482311 ATTATATCCC
Statistics
Matches: 235, Mismatches: 55, Indels: 47
0.70 0.16 0.14
Matches are distributed among these distances:
43 4 0.02
44 27 0.11
45 15 0.06
46 34 0.14
47 79 0.34
48 51 0.22
49 16 0.07
50 9 0.04
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.22
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
Found at i:79482112 original size:93 final size:93
Alignment explanation
Indices: 79481949--79482161 Score: 259
Period size: 93 Copynumber: 2.3 Consensus size: 93
79481939 TGATTTGTGT
* * * *
79481949 GCCAGTGTAAGACATGTCTGGAACATGCCTCGGCCACATTATGAGAGCCAGTGTAATACCATGTC
1 GCCAGTGTAAGACATGTCTGG-ACATGCCTCAGCCACACTATGAGAACCAGTGTAAGACCATGTC
* *
79482014 TGGGACATGGCATCGGCATC-TAGACGAGG
65 TGGGACATGGCATCGACA-CAGAGACGAGG
* * * *
79482043 GCTAGTGTAAGACATGTCTGTGACATGCGT-AGCCATACTATGATAACCAGTGTAAGACCATGTC
1 GCCAGTGTAAGACATGTCTG-GACATGCCTCAGCCACACTATGAGAACCAGTGTAAGACCATGTC
* *
79482107 TGGGACATGGCATCGACACAGAGATGAGT
65 TGGGACATGGCATCGACACAGAGACGAGG
*
79482136 GCCAGTGTGAGACATGTCTGGGACAT
1 GCCAGTGTAAGACATGTCT-GGACAT
79482162 ACACCGGCCT
Statistics
Matches: 102, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
92 1 0.01
93 73 0.72
94 27 0.26
95 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (93 bp):
GCCAGTGTAAGACATGTCTGGACATGCCTCAGCCACACTATGAGAACCAGTGTAAGACCATGTCT
GGGACATGGCATCGACACAGAGACGAGG
Found at i:79484496 original size:21 final size:21
Alignment explanation
Indices: 79484480--79484520 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
79484470 TATCAAACTG
79484480 AGCCAAACCCAAGTCAAAATA
1 AGCCAAACCCAAGTCAAAATA
* *
79484501 AGCCAAACCTAAGTTAAAAT
1 AGCCAAACCCAAGTCAAAAT
79484521 GCAAGTGCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.51, C:0.24, G:0.10, T:0.15
Consensus pattern (21 bp):
AGCCAAACCCAAGTCAAAATA
Found at i:79489883 original size:50 final size:50
Alignment explanation
Indices: 79489812--79489917 Score: 194
Period size: 50 Copynumber: 2.1 Consensus size: 50
79489802 TAAAAAGACC
*
79489812 ACTTTCCACTTCCTTTCATTGATCAAATGTTAGAATGTTTAGCGGGAAAA
1 ACTTACCACTTCCTTTCATTGATCAAATGTTAGAATGTTTAGCGGGAAAA
*
79489862 ACTTACCACTTCCTTTCATTGATCAAATGTTAGAATGTTTAGTGGGAAAA
1 ACTTACCACTTCCTTTCATTGATCAAATGTTAGAATGTTTAGCGGGAAAA
79489912 ACTTAC
1 ACTTAC
79489918 TACTATTGTT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 54 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (50 bp):
ACTTACCACTTCCTTTCATTGATCAAATGTTAGAATGTTTAGCGGGAAAA
Found at i:79493222 original size:22 final size:22
Alignment explanation
Indices: 79493178--79493222 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
79493168 AAGCACCAAC
* *
79493178 GTTGCTGTTGCACATCGCTATT
1 GTTGCTGTCGCACATCGCCATT
*
79493200 GTTGCTGTCGCACATTGCCATT
1 GTTGCTGTCGCACATCGCCATT
79493222 G
1 G
79493223 CTGTCGCACG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.13, C:0.24, G:0.24, T:0.38
Consensus pattern (22 bp):
GTTGCTGTCGCACATCGCCATT
Found at i:79493240 original size:19 final size:19
Alignment explanation
Indices: 79493201--79493242 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
79493191 ATCGCTATTG
*
79493201 TTGCTGTCGCACATTGCCA
1 TTGCTGTCGCACACTGCCA
* *
79493220 TTGCTGTCGCACGCTGTCA
1 TTGCTGTCGCACACTGCCA
79493239 TTGC
1 TTGC
79493243 CACCACACCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.12, C:0.31, G:0.24, T:0.33
Consensus pattern (19 bp):
TTGCTGTCGCACACTGCCA
Found at i:79500689 original size:66 final size:66
Alignment explanation
Indices: 79500597--79500753 Score: 208
Period size: 66 Copynumber: 2.4 Consensus size: 66
79500587 CCCCAAACAT
* * * * *
79500597 GCCTGTGT-CTCAGGCCATGTGGAAACAGTGCATACATACTGACTTGTATCACACGGTCGAGGAC
1 GCCTGTGTGC-CAGGCCATGTGAAAACAGGGCATACATACTGAATTGTATCACACGGCCAAGGAC
79500661 AC
65 AC
* * *
79500663 GCCTGTGTGCCAGGCCGTGTAAAAACAGGGCATACATACTGAATTTTATCACACGGCCAAGGACA
1 GCCTGTGTGCCAGGCCATGTGAAAACAGGGCATACATACTGAATTGTATCACACGGCCAAGGACA
79500728 C
66 C
* *
79500729 GCCCGTATGCCAGGCCATGTGAAAA
1 GCCTGTGTGCCAGGCCATGTGAAAA
79500754 TTGGAGGGTA
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
66 77 0.99
67 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.25, T:0.20
Consensus pattern (66 bp):
GCCTGTGTGCCAGGCCATGTGAAAACAGGGCATACATACTGAATTGTATCACACGGCCAAGGACA
C
Found at i:79505114 original size:19 final size:19
Alignment explanation
Indices: 79505075--79505114 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
79505065 ATGAAATTTT
*
79505075 AATTAGTATTATGAGATAA
1 AATTAGTATTATGAGAAAA
* *
79505094 AATTATTATTATTAGAAAA
1 AATTAGTATTATGAGAAAA
79505113 AA
1 AA
79505115 ATTACTCTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.10, T:0.38
Consensus pattern (19 bp):
AATTAGTATTATGAGAAAA
Found at i:79505219 original size:3 final size:3
Alignment explanation
Indices: 79505211--79505250 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
79505201 TATTTATAAA
* * *
79505211 ATT ATT ATT ATA ATA ATT ATT ATT ATA ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
79505251 GATAGGAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:79505228 original size:15 final size:15
Alignment explanation
Indices: 79505204--79505250 Score: 78
Period size: 15 Copynumber: 3.2 Consensus size: 15
79505194 TTAGATATAT
79505204 TTATAA-AATTATTA
1 TTATAATAATTATTA
79505218 TTATAATAATTATTA
1 TTATAATAATTATTA
*
79505233 TTATAATTATTATTA
1 TTATAATAATTATTA
79505248 TTA
1 TTA
79505251 GATAGGAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
14 6 0.19
15 25 0.81
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TTATAATAATTATTA
Found at i:79505244 original size:12 final size:12
Alignment explanation
Indices: 79505214--79505248 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
79505204 TTATAAAATT
*
79505214 ATTATTATAATA
1 ATTATTATTATA
79505226 ATTATTATTATA
1 ATTATTATTATA
79505238 ATTATTATTAT
1 ATTATTATTAT
79505249 TAGATAGGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
ATTATTATTATA
Found at i:79511837 original size:13 final size:13
Alignment explanation
Indices: 79511819--79511861 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
79511809 GATTTTAAAT
79511819 TATTTAGTGATAA
1 TATTTAGTGATAA
79511832 TATTTAG-GAT--
1 TATTTAGTGATAA
*
79511842 TATTTAGTGACAA
1 TATTTAGTGATAA
79511855 TATTTAG
1 TATTTAG
79511862 GAAAATATAG
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
10 7 0.27
11 2 0.08
12 3 0.12
13 14 0.54
ACGTcount: A:0.35, C:0.02, G:0.16, T:0.47
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:79511843 original size:23 final size:23
Alignment explanation
Indices: 79511817--79511863 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
79511807 TTGATTTTAA
*
79511817 ATTATTTAGTGATAATATTTAGG
1 ATTATTTAGTGACAATATTTAGG
79511840 ATTATTTAGTGACAATATTTAGG
1 ATTATTTAGTGACAATATTTAGG
79511863 A
1 A
79511864 AAATATAGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.02, G:0.17, T:0.45
Consensus pattern (23 bp):
ATTATTTAGTGACAATATTTAGG
Found at i:79512817 original size:28 final size:29
Alignment explanation
Indices: 79512763--79512830 Score: 111
Period size: 28 Copynumber: 2.3 Consensus size: 29
79512753 GAATTTGTTT
79512763 TTATTTTATTTTATTACACTTTGTATTTCC
1 TTATTTTA-TTTATTACACTTTGTATTTCC
*
79512793 TTATTTTATTT-TTACACTTTTTATTTCC
1 TTATTTTATTTATTACACTTTGTATTTCC
79512821 TTATTTTATT
1 TTATTTTATT
79512831 ATCTTAATCA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
28 26 0.70
29 3 0.08
30 8 0.22
ACGTcount: A:0.19, C:0.12, G:0.01, T:0.68
Consensus pattern (29 bp):
TTATTTTATTTATTACACTTTGTATTTCC
Found at i:79518550 original size:16 final size:16
Alignment explanation
Indices: 79518529--79518563 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
79518519 TGTTGTTTGT
79518529 ACTTTAAAATAAGCCA
1 ACTTTAAAATAAGCCA
79518545 ACTTTAAAATAAGCCA
1 ACTTTAAAATAAGCCA
79518561 ACT
1 ACT
79518564 AAACAAGTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.49, C:0.20, G:0.06, T:0.26
Consensus pattern (16 bp):
ACTTTAAAATAAGCCA
Found at i:79521077 original size:25 final size:25
Alignment explanation
Indices: 79521045--79521099 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
79521035 TTTTTCAAAT
79521045 ATATATTATTTTAA-AAATTATAAA-A
1 ATATATTA-TTTAATAAATT-TAAAGA
79521070 ATATATTATTTAATAAATTTAAAGA
1 ATATATTATTTAATAAATTTAAAGA
79521095 ATATA
1 ATATA
79521100 CACGTAAACT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
24 9 0.32
25 19 0.68
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (25 bp):
ATATATTATTTAATAAATTTAAAGA
Found at i:79521833 original size:11 final size:11
Alignment explanation
Indices: 79521817--79521876 Score: 52
Period size: 11 Copynumber: 5.2 Consensus size: 11
79521807 TTGAATAATG
79521817 AATTAAAAATT
1 AATTAAAAATT
79521828 AATT-AAAA-T
1 AATTAAAAATT
79521837 AATTAAAAATAT
1 AATTAAAAAT-T
*
79521849 ATTATTTAAAAACT
1 A--A-TTAAAAATT
79521863 AATTAAAAAGTT
1 AATTAAAAA-TT
79521875 AA
1 AA
79521877 AAGTGAAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 13
0.73 0.04 0.24
Matches are distributed among these distances:
9 5 0.12
10 8 0.20
11 11 0.28
12 6 0.15
14 3 0.08
15 7 0.17
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (11 bp):
AATTAAAAATT
Found at i:79533943 original size:18 final size:18
Alignment explanation
Indices: 79533897--79533939 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
79533887 GGCCCAGAAT
79533897 CCCACACGCCCGTATGGA
1 CCCACACGCCCGTATGGA
* *
79533915 CTCACATGCCCGTATGG-
1 CCCACACGCCCGTATGGA
79533932 CCCACACG
1 CCCACACG
79533940 GCCCAAATCA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.21, C:0.44, G:0.21, T:0.14
Consensus pattern (18 bp):
CCCACACGCCCGTATGGA
Found at i:79541959 original size:13 final size:13
Alignment explanation
Indices: 79541941--79541966 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79541931 TTGAGCAAGC
79541941 GTAAGGCTTAAGT
1 GTAAGGCTTAAGT
79541954 GTAAGGCTTAAGT
1 GTAAGGCTTAAGT
79541967 TAAAAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.31
Consensus pattern (13 bp):
GTAAGGCTTAAGT
Found at i:79558366 original size:17 final size:17
Alignment explanation
Indices: 79558344--79558386 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
79558334 TTAATTGGTA
79558344 TATATATTTTGAAATT-T
1 TATATATTTTG-AATTAT
*
79558361 TATATATTTAGAATTAT
1 TATATATTTTGAATTAT
79558378 T-TATATTTT
1 TATATATTTT
79558387 ATATAATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 11 0.48
17 12 0.52
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (17 bp):
TATATATTTTGAATTAT
Found at i:79558433 original size:18 final size:18
Alignment explanation
Indices: 79558385--79558436 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
79558375 TATTTATATT
79558385 TTATATAATTTATTAAAAA
1 TTATATAATTT-TTAAAAA
* * *
79558404 -AATAGAAATTTTAAAAA
1 TTATATAATTTTTAAAAA
79558421 TTATATAATTTTTAAA
1 TTATATAATTTTTAAA
79558437 CTTTTTTTTG
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
17 7 0.27
18 19 0.73
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (18 bp):
TTATATAATTTTTAAAAA
Found at i:79558868 original size:22 final size:23
Alignment explanation
Indices: 79558828--79558873 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 23
79558818 ACCCCAATAT
*
79558828 TTTAAATGATTTAAATTTTTTTA
1 TTTAAAAGATTTAAATTTTTTTA
79558851 TTTAAAAG-TTT-AATTTTTTTA
1 TTTAAAAGATTTAAATTTTTTTA
79558872 TT
1 TT
79558874 CAAACTCTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 12 0.55
22 3 0.14
23 7 0.32
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTAAAAGATTTAAATTTTTTTA
Found at i:79568826 original size:42 final size:42
Alignment explanation
Indices: 79568775--79568857 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
79568765 CAAGGACAAG
*
79568775 TTTTATATGCATAATCAAAACCATTATTATTCAAATGACCTA
1 TTTTATATGCATAATCAAAACCATTATCATTCAAATGACCTA
79568817 TTTTATATGCATAATCAAAACCATTATCATTCAAATGACCT
1 TTTTATATGCATAATCAAAACCATTATCATTCAAATGACCT
79568858 TTATACATAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.40, C:0.18, G:0.05, T:0.37
Consensus pattern (42 bp):
TTTTATATGCATAATCAAAACCATTATCATTCAAATGACCTA
Found at i:79571264 original size:9 final size:10
Alignment explanation
Indices: 79571249--79571274 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
79571239 CTTATTTTTT
79571249 CATTTTTTCA
1 CATTTTTTCA
79571259 CATTTTTTCA
1 CATTTTTTCA
79571269 CATTTT
1 CATTTT
79571275 AACCACTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.62
Consensus pattern (10 bp):
CATTTTTTCA
Found at i:79572289 original size:22 final size:22
Alignment explanation
Indices: 79572264--79572311 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
79572254 AACGCTTTAA
79572264 AGTAGGCACCAAAGTGCAAATC
1 AGTAGGCACCAAAGTGCAAATC
* *
79572286 AGTAGGCACCATAGTGTAAATC
1 AGTAGGCACCAAAGTGCAAATC
79572308 AGTA
1 AGTA
79572312 TATATATTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.19
Consensus pattern (22 bp):
AGTAGGCACCAAAGTGCAAATC
Found at i:79577955 original size:6 final size:6
Alignment explanation
Indices: 79577936--79577995 Score: 56
Period size: 6 Copynumber: 10.7 Consensus size: 6
79577926 TTATTTTATC
** * *
79577936 AAAATA AATTTA AAAATA AAAA-A CAAA-A AACA-A AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
79577981 AAAATA AAAA-A AAAA
1 AAAATA AAAATA AAAA
79577996 AAACCTGAAC
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
5 16 0.36
6 29 0.64
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.13
Consensus pattern (6 bp):
AAAATA
Found at i:79577957 original size:1 final size:1
Alignment explanation
Indices: 79577947--79577998 Score: 50
Period size: 1 Copynumber: 52.0 Consensus size: 1
79577937 AAATAAATTT
* * * * * *
79577947 AAAAATAAAAAACAAAAAACAAAAAATAAAAATAAAAATAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
79577999 CCTGAACCGA
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.88, C:0.04, G:0.00, T:0.08
Consensus pattern (1 bp):
A
Found at i:79577983 original size:33 final size:33
Alignment explanation
Indices: 79577936--79577999 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
79577926 TTATTTTATC
** *
79577936 AAAATAAATTTAAAAATAAAAAACAAAAAACAA
1 AAAATAAAAATAAAAATAAAAAAAAAAAAACAA
79577969 AAAATAAAAATAAAAATAAAAAAAAAAAAAC
1 AAAATAAAAATAAAAATAAAAAAAAAAAAAC
79578000 CTGAACCGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.83, C:0.05, G:0.00, T:0.12
Consensus pattern (33 bp):
AAAATAAAAATAAAAATAAAAAAAAAAAAACAA
Found at i:79578324 original size:35 final size:36
Alignment explanation
Indices: 79578257--79578327 Score: 126
Period size: 35 Copynumber: 2.0 Consensus size: 36
79578247 CAATGATATG
79578257 CAATCTTAGATATGATATGCAATCTTAAATATGATA
1 CAATCTTAGATATGATATGCAATCTTAAATATGATA
*
79578293 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGCAATCTTAAATATGATA
79578328 TGCAATTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 18 0.53
36 16 0.47
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (36 bp):
CAATCTTAGATATGATATGCAATCTTAAATATGATA
Found at i:79578346 original size:17 final size:19
Alignment explanation
Indices: 79578249--79578339 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
79578239 ATAATCTTCA
79578249 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
79578268 ATGATATGCAATCTTAAAT
1 ATGATATGCAATCTTAGAT
79578287 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
79578304 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
79578322 ATGATATGCAATTTTAGA
1 ATGATATGCAATCTTAGA
79578340 AGATATGATT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 15 0.23
18 16 0.24
19 35 0.53
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:79578649 original size:18 final size:17
Alignment explanation
Indices: 79578626--79578659 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
79578616 TTTCCCTAAT
*
79578626 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
79578644 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
79578660 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:79583416 original size:37 final size:37
Alignment explanation
Indices: 79583340--79583418 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
79583330 TTATTACGAA
* * * *
79583340 GTCTTACCCGGACATAATCTCCACAAGAAGTTATTGG
1 GTCTTACCCGGACAAAATCCCCACAAGAAGTCATCGG
* *
79583377 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACAAGAAGTCATCGG
79583414 GTCTT
1 GTCTT
79583419 TGGAGCTCGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACAAGAAGTCATCGG
Found at i:79583647 original size:47 final size:47
Alignment explanation
Indices: 79583536--79583805 Score: 477
Period size: 47 Copynumber: 5.7 Consensus size: 47
79583526 GCCCTTCGGG
*
79583536 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
79583586 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
79583633 ACTTTCACATTCATCACATCGGCCATCAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
79583680 ACTTTCACATTCATCACATCGGCCATCAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
79583727 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
79583774 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
79583806 ATACTATCAT
Statistics
Matches: 215, Mismatches: 5, Indels: 3
0.96 0.02 0.01
Matches are distributed among these distances:
47 178 0.83
49 33 0.15
50 4 0.02
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.30
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:79586340 original size:47 final size:47
Alignment explanation
Indices: 79586202--79586756 Score: 832
Period size: 47 Copynumber: 11.7 Consensus size: 47
79586192 GGGTGTCACA
*
79586202 GTGATGAATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAAT
1 GTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCGAATGGCCGAT
*
79586250 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGAT
*
79586299 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGAT
*
79586346 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAAT
1 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGAT
79586395 GTGATGAATGTGAAAGTG----TATGTGATAAGGCCGAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGAT
*
79586438 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGAT
*
79586487 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGAT
*
79586534 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGAT
* *
79586583 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGAT
* *
79586630 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGAT
* * * * *
79586677 GTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAAC
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGAT
*
79586724 GTGATTG-ATGTGAAAGTGTATAAATGTGATAAG
1 GTGA-TGAATGTGAAAGTGTATATATGTGATAAG
79586757 TCCCGAAGGG
Statistics
Matches: 474, Mismatches: 21, Indels: 25
0.91 0.04 0.05
Matches are distributed among these distances:
43 42 0.09
47 232 0.49
48 20 0.04
49 180 0.38
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGAT
Found at i:79586367 original size:96 final size:96
Alignment explanation
Indices: 79586202--79586756 Score: 930
Period size: 96 Copynumber: 5.9 Consensus size: 96
79586192 GGGTGTCACA
79586202 GTGATGAATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
1 GTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
79586267 GTATATATATGTGATAAGGCCTAATGGCCGAT
65 GTATATATATGTGATAAGGCCTAATGGCCGAT
79586299 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* *
79586364 TATATATATGTGATAAGGCCGAATGGCCAAT
66 TATATATATGTGATAAGGCCTAATGGCCGAT
*
79586395 GTGATGAATGTGAAAGTG----TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
79586456 TATATATATGTGATAAGGCCTAATGGCCGAT
66 TATATATATGTGATAAGGCCTAATGGCCGAT
79586487 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
79586552 TATATATATGTGATAAGGCCTAATGGCCGAT
66 TATATATATGTGATAAGGCCTAATGGCCGAT
* * *
79586583 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
79586648 --TATATATGTGATAAGGCCTAATAGCCGAT
66 TATATATATGTGATAAGGCCTAATGGCCGAT
* * * *
79586677 GTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATTG-ATGTGAAAGT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGA-TGAATGTGAAAGT
79586741 GTATA-A-ATGTGATAAG
65 GTATATATATGTGATAAG
79586757 TCCCGAAGGG
Statistics
Matches: 434, Mismatches: 17, Indels: 17
0.93 0.04 0.04
Matches are distributed among these distances:
92 89 0.21
94 93 0.21
95 3 0.01
96 231 0.53
97 18 0.04
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
TATATATATGTGATAAGGCCTAATGGCCGAT
Found at i:79586399 original size:22 final size:22
Alignment explanation
Indices: 79586371--79586442 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
79586361 GTGTATATAT
79586371 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * * *
79586393 ATGTGATGAATG-TGAAAGTG--T
1 ATGTGAT-AAGGCCGAATG-GCCA
*
79586414 ATGTGATAAGGCCGAATGGCCG
1 ATGTGATAAGGCCGAATGGCCA
79586436 ATGTGAT
1 ATGTGAT
79586443 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
20 4 0.11
21 11 0.30
22 18 0.49
23 4 0.11
ACGTcount: A:0.31, C:0.11, G:0.33, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:79596656 original size:78 final size:78
Alignment explanation
Indices: 79596546--79596840 Score: 441
Period size: 78 Copynumber: 3.8 Consensus size: 78
79596536 CGAAGAAATA
** * *
79596546 GATTTGGCATCTCCATATTCGAC-GGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACAGG-GAGCAGATCGAAGACATAACAGATCTGACCTTCATTGA
79596610 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* *
79596624 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACACAACAGATATGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
79596689 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * * *
79596702 GATTTGACATCTTTGTACTAGACGGGGAGCAGATTGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAACAGATCT-GACCTTCATTGA
79596766 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* *
79596780 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAAACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAACAGATCTGACCTTCAT
79596841 GTGTTTACAT
Statistics
Matches: 195, Mismatches: 19, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
77 1 0.01
78 191 0.98
79 3 0.02
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.24
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:79596933 original size:45 final size:46
Alignment explanation
Indices: 79596863--79597054 Score: 223
Period size: 45 Copynumber: 4.3 Consensus size: 46
79596853 AAGCAGATCC
* *
79596863 AAGATGACAGATTTGGCATCTCTGTATTAAATGGGGAGCAAATCAG
1 AAGATAACAGATTTGGCATCTCTGTATTAAACGGGGAGCAAATCAG
* * *
79596909 -AGATAACAGATTTGGCATCTCTGTATTAGACGGGGAAGCAGAT-TG
1 AAGATAACAGATTTGGCATCTCTGTATTAAACGGGG-AGCAAATCAG
* ** *
79596954 AAGA-AGCAGATTTGGTGTCTCTGTATTAAACGGGGAGCAGATC-G
1 AAGATAACAGATTTGGCATCTCTGTATTAAACGGGGAGCAAATCAG
* * *
79596998 AAGATAACAGATTTGGCGTCTCTGTATTAGACGGGAAGCAAATCA-
1 AAGATAACAGATTTGGCATCTCTGTATTAAACGGGGAGCAAATCAG
*
79597043 AAGATAGCAGAT
1 AAGATAACAGAT
79597055 ATCGCCTTGC
Statistics
Matches: 126, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
44 12 0.10
45 105 0.83
46 9 0.07
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.25
Consensus pattern (46 bp):
AAGATAACAGATTTGGCATCTCTGTATTAAACGGGGAGCAAATCAG
Found at i:79596983 original size:90 final size:90
Alignment explanation
Indices: 79596852--79597054 Score: 268
Period size: 90 Copynumber: 2.3 Consensus size: 90
79596842 TGTTTACATC
* *
79596852 GAAGCAGATCCAAGATGACAGATTTGGCATCTCTGTATTAAATGGGGAGCAAATC-AGAGATAAC
1 GAAGCAGATCCAAGAAGACAGATTTGGCATCTCTGTATTAAACGGGGAGCAAATCGA-AGATAAC
79596916 AGATTTGGCATCTCTGTATTAGACGGG
65 AGATTTGGCATCTCTGTATTAGAC-GG
** ** *
79596943 GAAGCAGATTGAAGAAG-CAGATTTGGTGTCTCTGTATTAAACGGGGAGCAGATCGAAGATAACA
1 GAAGCAGATCCAAGAAGACAGATTTGGCATCTCTGTATTAAACGGGGAGCAAATCGAAGATAACA
*
79597007 GATTTGGCGTCTCTGTATTAGACGG
66 GATTTGGCATCTCTGTATTAGACGG
* *
79597032 GAAGCAAATCAAAGATAG-CAGAT
1 GAAGCAGATCCAAGA-AGACAGAT
79597055 ATCGCCTTGC
Statistics
Matches: 99, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
89 14 0.14
90 70 0.71
91 15 0.15
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24
Consensus pattern (90 bp):
GAAGCAGATCCAAGAAGACAGATTTGGCATCTCTGTATTAAACGGGGAGCAAATCGAAGATAACA
GATTTGGCATCTCTGTATTAGACGG
Found at i:79597476 original size:35 final size:37
Alignment explanation
Indices: 79597405--79597493 Score: 146
Period size: 35 Copynumber: 2.4 Consensus size: 37
79597395 ATAATCTTCA
79597405 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
79597443 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
79597478 ATGATATGCAATCTTA
1 ATGATA-GCAATCTTA
79597494 AAAGATATGA
Statistics
Matches: 49, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
35 19 0.39
36 16 0.33
37 8 0.16
38 6 0.12
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:79597502 original size:17 final size:19
Alignment explanation
Indices: 79597405--79597493 Score: 157
Period size: 19 Copynumber: 4.8 Consensus size: 19
79597395 ATAATCTTCA
79597405 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
79597424 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
79597443 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
79597460 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
79597478 ATGATATGCAATCTTA
1 ATGATATGCAATCTTA
79597494 AAAGATATGA
Statistics
Matches: 67, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 35 0.52
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:79597521 original size:22 final size:22
Alignment explanation
Indices: 79597405--79597504 Score: 95
Period size: 19 Copynumber: 5.2 Consensus size: 22
79597395 ATAATCTTCA
79597405 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAAAAGAT
79597424 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAAAAGAT
79597443 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAAAAGAT
79597460 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAAAAGAT
79597478 ATGATATGCAATCTTAAAAGAT
1 ATGATATGCAATCTTAAAAGAT
79597500 ATGAT
1 ATGAT
79597505 TTTGTAATCT
Statistics
Matches: 75, Mismatches: 0, Indels: 9
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.21
18 16 0.21
19 34 0.45
22 9 0.12
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (22 bp):
ATGATATGCAATCTTAAAAGAT
Found at i:79597808 original size:18 final size:17
Alignment explanation
Indices: 79597785--79597818 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
79597775 TTTCCCTAAT
*
79597785 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
79597803 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
79597819 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:79610652 original size:81 final size:81
Alignment explanation
Indices: 79610517--79610679 Score: 299
Period size: 81 Copynumber: 2.0 Consensus size: 81
79610507 ATTCCCATTA
*
79610517 CAAAACTTATCATTTAACACTTAAGCATAATCAAACATGTATCAGCAAATAACAAAACAGAGCAT
1 CAAAACTTATCATTTAACACTTAAGCATAATCAAACATGTATAAGCAAATAACAAAACAGAGCAT
*
79610582 GTGATAGAATATCTAT
66 GTGATAAAATATCTAT
*
79610598 CAAAACTTATCATTTAACACTTAAGCATAATCAAACATGTATAAGCAAATAACAAAATAGAGCAT
1 CAAAACTTATCATTTAACACTTAAGCATAATCAAACATGTATAAGCAAATAACAAAACAGAGCAT
79610663 GTGATAAAATATCTAT
66 GTGATAAAATATCTAT
79610679 C
1 C
79610680 TTATTAGTTG
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.48, C:0.17, G:0.09, T:0.26
Consensus pattern (81 bp):
CAAAACTTATCATTTAACACTTAAGCATAATCAAACATGTATAAGCAAATAACAAAACAGAGCAT
GTGATAAAATATCTAT
Found at i:79613634 original size:95 final size:94
Alignment explanation
Indices: 79613469--79613642 Score: 249
Period size: 95 Copynumber: 1.8 Consensus size: 94
79613459 ACTTGTGTGA
* * *
79613469 GCTAGAGTAAGACATGTCTGGGACATGCGTTGGCCACATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGAGTAAGACATGTCTGGGACATGCATCGGCCACATAATGAGAGCCAGTGTAAGACCATGTC
79613534 TGGGACATGGCATCAGCATTGAGACTAGT
66 TGGGACATGGCATCAGCATTGAGACTAGT
* * ** * **
79613563 GCTAGAGTGAGACGTGTCTGGGACATGCATCGGCTTCGATAATGATAGTTAGTGTAAGACCATGT
1 GCTAGAGTAAGACATGTCTGGGACATGCATCGGCCAC-ATAATGAGAGCCAGTGTAAGACCATGT
79613628 CTGGGACATGGCATC
65 CTGGGACATGGCATC
79613643 GACTTGAGAT
Statistics
Matches: 69, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
94 31 0.45
95 38 0.55
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.25
Consensus pattern (94 bp):
GCTAGAGTAAGACATGTCTGGGACATGCATCGGCCACATAATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCAGCATTGAGACTAGT
Found at i:79613675 original size:47 final size:46
Alignment explanation
Indices: 79613514--79613692 Score: 150
Period size: 47 Copynumber: 3.8 Consensus size: 46
79613504 ACATTATGAG
79613514 AGCCAGTGTAAGACCATGTCTGGGACATGGCATC-AGCATTGAGACTAGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-C-TTGAGA-T-GT
* * * * * *
79613563 -GCTAGAGTGAGA-CGTGTCTGGGACAT-GCATCGGCTTCGATAATGAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTT-GA-GATG-T
**
79613609 AGTTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGT
* ** *
79613655 GAGCCAGTGTAAGACTATGTCCAGGACATAGCATCGAC
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
79613693 ACCTTACCCC
Statistics
Matches: 104, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
45 3 0.03
46 11 0.11
47 57 0.55
48 24 0.23
49 9 0.09
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGT
Found at i:79613682 original size:95 final size:96
Alignment explanation
Indices: 79613518--79613690 Score: 221
Period size: 95 Copynumber: 1.8 Consensus size: 96
79613508 TATGAGAGCC
* * * **
79613518 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACTAGTGCTAGAGTGAGACGTGTCTG
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACTAGTGCCAGAGTAAGACATGTCCA
79613583 GGACAT-GCATCGGCTTCGATAATGATAGTT
66 GGACATAGCATCGGCTTCGATAATGATAGTT
*
79613613 AGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTGAGA-T-GTGAGCCAGTGTAAGACTATG
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCA-TTGAGACTAGT--GCCAGAGTAAGAC-ATG
79613674 TCCAGGACATAGCATCG
62 TCCAGGACATAGCATCG
79613691 ACACCTTACC
Statistics
Matches: 67, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
92 2 0.03
93 2 0.03
94 17 0.25
95 40 0.60
96 6 0.09
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACTAGTGCCAGAGTAAGACATGTCCA
GGACATAGCATCGGCTTCGATAATGATAGTT
Found at i:79615302 original size:42 final size:42
Alignment explanation
Indices: 79615211--79615360 Score: 176
Period size: 42 Copynumber: 3.5 Consensus size: 42
79615201 GTCCTAGGCG
* * * * *
79615211 TGGTCTTACATGTAATCACATATCGGTACC-ACTGTCCCAGATA
1 TGGTCTTACACGAAATCACATAT-GATGCCGA-TGTCCCAGACA
* * *
79615254 GGGTCTTACACGAAATCACATATGATGCCGATGTCCTAGGCA
1 TGGTCTTACACGAAATCACATATGATGCCGATGTCCCAGACA
* *
79615296 TGGTCTTACACGAAGTCACATACGATGCCGATGTCCCAGACA
1 TGGTCTTACACGAAATCACATATGATGCCGATGTCCCAGACA
*
79615338 TGGTCTTACATGAAATCACATAT
1 TGGTCTTACACGAAATCACATAT
79615361 AAGAATCCTA
Statistics
Matches: 90, Mismatches: 16, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
42 69 0.77
43 21 0.23
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (42 bp):
TGGTCTTACACGAAATCACATATGATGCCGATGTCCCAGACA
Found at i:79620689 original size:22 final size:25
Alignment explanation
Indices: 79620664--79620711 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 25
79620654 GAAATACATT
*
79620664 AGTGAAA-GA-TTCTTGG-ACTCAA
1 AGTGAAAGGAGTTCCTGGAACTCAA
79620686 AGTGAAAGGAGTTCCTGGAACTCAA
1 AGTGAAAGGAGTTCCTGGAACTCAA
79620711 A
1 A
79620712 CAAGAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 2 0.09
24 6 0.27
25 7 0.32
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.23
Consensus pattern (25 bp):
AGTGAAAGGAGTTCCTGGAACTCAA
Found at i:79626311 original size:101 final size:101
Alignment explanation
Indices: 79626178--79626375 Score: 297
Period size: 101 Copynumber: 2.0 Consensus size: 101
79626168 TAGGGTCTGA
* * * *
79626178 ATTTAGCCTTGACTGGTAATTCAGATCCGAGCTCATTATAGGTGTTTGTCGTTACAAGGGATTTA
1 ATTTAGCCTGGACTGGTAATTCAGATCCGAGCTCATTACAGGTGTTTGTCGCTACAAGGGATTCA
* * *
79626243 GCCTAGATTGGTAATCCAGACATCACCTTATGGGGG
66 GACTAGACTGGTAATCCAGACATCACCCTATGGGGG
* * *
79626279 ATTTAGCCTGGACTGGTAATTCAGATCTGAGCTCATTACGGGTGTTTGTTGCTACAAGGGATTCA
1 ATTTAGCCTGGACTGGTAATTCAGATCCGAGCTCATTACAGGTGTTTGTCGCTACAAGGGATTCA
*
79626344 GACTAGACTGGTAATCCTGACATCACCCTATG
66 GACTAGACTGGTAATCCAGACATCACCCTATG
79626376 AGTTGATATT
Statistics
Matches: 86, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 86 1.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (101 bp):
ATTTAGCCTGGACTGGTAATTCAGATCCGAGCTCATTACAGGTGTTTGTCGCTACAAGGGATTCA
GACTAGACTGGTAATCCAGACATCACCCTATGGGGG
Found at i:79629362 original size:17 final size:17
Alignment explanation
Indices: 79629340--79629400 Score: 69
Period size: 17 Copynumber: 3.9 Consensus size: 17
79629330 TTTGATTGCC
79629340 TAATTAAATTAATTCTA
1 TAATTAAATTAATTCTA
*
79629357 TAATTAATTTAATTC--
1 TAATTAAATTAATTCTA
79629372 --ATT-AATTAATTCTA
1 TAATTAAATTAATTCTA
*
79629386 TAATTAATTTAATTC
1 TAATTAAATTAATTC
79629401 ATGTGACAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
12 8 0.22
13 3 0.08
16 3 0.08
17 22 0.61
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.51
Consensus pattern (17 bp):
TAATTAAATTAATTCTA
Found at i:79629379 original size:29 final size:29
Alignment explanation
Indices: 79629346--79629402 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
79629336 TGCCTAATTA
79629346 AATTAATTCTATAATTAATTTAATTCATT
1 AATTAATTCTATAATTAATTTAATTCATT
79629375 AATTAATTCTATAATTAATTTAATTCAT
1 AATTAATTCTATAATTAATTTAATTCAT
79629403 GTGACAGCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (29 bp):
AATTAATTCTATAATTAATTTAATTCATT
Found at i:79640085 original size:13 final size:15
Alignment explanation
Indices: 79640056--79640087 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
79640046 GAGAAAGGTT
79640056 GATTCAGAGGCAAGA
1 GATTCAGAGGCAAGA
79640071 GATTC-GAGG-AAGA
1 GATTCAGAGGCAAGA
79640084 GATT
1 GATT
79640088 AATGAGTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 4 0.24
15 5 0.29
ACGTcount: A:0.38, C:0.09, G:0.34, T:0.19
Consensus pattern (15 bp):
GATTCAGAGGCAAGA
Found at i:79642611 original size:26 final size:26
Alignment explanation
Indices: 79642582--79642700 Score: 114
Period size: 26 Copynumber: 4.5 Consensus size: 26
79642572 ATAAAAGATC
*
79642582 TAAAATAAATAATAAATGAAACAGCT
1 TAAAATAAATAATAAATAAAACAGCT
* * * *
79642608 TAAAGTAAATAATATAAAAAAAATAGTT
1 TAAAATAAAT-A-ATAAATAAAACAGCT
* * * *
79642636 TCAAATAAATAATATATAAAAAAACT
1 TAAAATAAATAATAAATAAAACAGCT
* *
79642662 TAAAATAAATAA-CAATAAAGCAGCT
1 TAAAATAAATAATAAATAAAACAGCT
79642687 TAAAATAAATAATA
1 TAAAATAAATAATA
79642701 TAAAAATTTT
Statistics
Matches: 71, Mismatches: 19, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
25 20 0.28
26 30 0.42
27 2 0.03
28 19 0.27
ACGTcount: A:0.64, C:0.06, G:0.05, T:0.25
Consensus pattern (26 bp):
TAAAATAAATAATAAATAAAACAGCT
Found at i:79642819 original size:26 final size:26
Alignment explanation
Indices: 79642776--79642826 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
79642766 ATAGAAAATA
79642776 TATAGAATAGTTTAAAATAAATAATG
1 TATAGAATAGTTTAAAATAAATAATG
*
79642802 TATAGAAATA-TTTGAAATAAATAAT
1 TATAG-AATAGTTTAAAATAAATAAT
79642827 ATACAAAGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.35
Consensus pattern (26 bp):
TATAGAATAGTTTAAAATAAATAATG
Found at i:79642845 original size:26 final size:26
Alignment explanation
Indices: 79642816--79642882 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 26
79642806 GAAATATTTG
79642816 AAATAAATAATATACAAAG-CAATCTA
1 AAATAAATAATATA-AAAGACAATCTA
* *
79642842 AAATAAATAATATATAAGACAATTTA
1 AAATAAATAATATAAAAGACAATCTA
79642868 AAAT-AAT-ATATAAAA
1 AAATAAATAATATAAAA
79642883 ATGTTTAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
24 7 0.19
25 6 0.16
26 24 0.65
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.27
Consensus pattern (26 bp):
AAATAAATAATATAAAAGACAATCTA
Found at i:79645747 original size:23 final size:23
Alignment explanation
Indices: 79645707--79645794 Score: 78
Period size: 23 Copynumber: 3.9 Consensus size: 23
79645697 AGCTTATTGT
*
79645707 TTTCAGCTC-ATTGCAGCTTACCA
1 TTTCAGCTCGATAG-AGCTTACCA
* *
79645730 TTTTAGCTCG-TATGAGC-TACTA
1 TTTCAGCTCGATA-GAGCTTACCA
*
79645752 -TTCAGGTCGATAGAGCTTACCA
1 TTTCAGCTCGATAGAGCTTACCA
79645774 TTTCAGCTC-ATTAGAGCTTAC
1 TTTCAGCTCGA-TAGAGCTTAC
79645795 TATTCATCAG
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
21 11 0.21
22 11 0.21
23 29 0.56
24 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (23 bp):
TTTCAGCTCGATAGAGCTTACCA
Found at i:79664026 original size:14 final size:14
Alignment explanation
Indices: 79664004--79664037 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
79663994 CTTTCTCTTC
*
79664004 TCTTCCTTTATTTT
1 TCTTTCTTTATTTT
*
79664018 TCTTTCTTTCTTTT
1 TCTTTCTTTATTTT
79664032 TCTTTC
1 TCTTTC
79664038 CCTTTCTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.74
Consensus pattern (14 bp):
TCTTTCTTTATTTT
Found at i:79666534 original size:49 final size:51
Alignment explanation
Indices: 79666462--79666601 Score: 194
Period size: 49 Copynumber: 2.8 Consensus size: 51
79666452 AGCCGAAGCT
*
79666462 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATA
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGATCACAATA
* * * *
79666511 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTT
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGATCACAATA
* * *
79666562 TTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACG
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACG
79666602 TGACCTCACA
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
49 40 0.50
50 1 0.01
51 39 0.49
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (51 bp):
ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGATCACAATA
Found at i:79666591 original size:51 final size:49
Alignment explanation
Indices: 79666466--79666606 Score: 192
Period size: 51 Copynumber: 2.8 Consensus size: 49
79666456 GAAGCTATCT
* * *
79666466 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCT
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATAATCG
* * **
79666515 GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATAATCG
*
79666566 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
79666607 TCACAATAGT
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
49 37 0.46
50 2 0.02
51 42 0.52
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (49 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATAATCG
Found at i:79672289 original size:43 final size:43
Alignment explanation
Indices: 79672174--79672302 Score: 118
Period size: 43 Copynumber: 3.0 Consensus size: 43
79672164 TTTGGTAATC
* * ** *
79672174 CAAAGCAATTATACT-AGCATACG-AGGTACATCATCAAATTAAT
1 CAAAGCAATTATACTGA-CACACGCA-GTGCATCATCGGATAAAT
* ** * * *
79672217 CAAAGCAATTATATTGGTACATGCCGTGCATCATTGGATAAAT
1 CAAAGCAATTATACTGACACACGCAGTGCATCATCGGATAAAT
*
79672260 CAAAGCAATTATACTGACACACGTAGTGCATCATCGGATAAAT
1 CAAAGCAATTATACTGACACACGCAGTGCATCATCGGATAAAT
79672303 TGAAGTAATC
Statistics
Matches: 66, Mismatches: 18, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
43 66 1.00
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.26
Consensus pattern (43 bp):
CAAAGCAATTATACTGACACACGCAGTGCATCATCGGATAAAT
Found at i:79675595 original size:12 final size:12
Alignment explanation
Indices: 79675578--79675603 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
79675568 CATTCCGAAG
79675578 TATATATATACA
1 TATATATATACA
79675590 TATATATATACA
1 TATATATATACA
79675602 TA
1 TA
79675604 AGTATGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:79676118 original size:27 final size:27
Alignment explanation
Indices: 79676087--79676264 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
79676077 TAAATTGTAC
79676087 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * ** *
79676114 TGCACTAAGTGTACGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
79676140 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
79676168 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
79676196 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
79676223 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
79676250 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
79676265 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:79676201 original size:82 final size:81
Alignment explanation
Indices: 79676088--79676243 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
79676078 AAATTGTACA
* *
79676088 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTACGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGTA-GCACTAAGTG
79676152 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
79676169 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTACGAAATGAATACGTAGCACTAAGTG
*
79676234 TGCGAGTTGA
65 TGCGAATTGA
79676244 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:79676255 original size:82 final size:81
Alignment explanation
Indices: 79676084--79676264 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
79676074 GATTAAATTG
* *
79676084 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTACGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGATGCACTAA
79676149 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
79676165 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTACGAAATGAATACGAT-GCACT
* **
79676229 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
79676247 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
79676265 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:79702819 original size:23 final size:23
Alignment explanation
Indices: 79702792--79702837 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
79702782 ATATCAATAT
79702792 AAAATGAACAACATCACAGTTAA
1 AAAATGAACAACATCACAGTTAA
79702815 AAAATGAACAACATCACAGTTAA
1 AAAATGAACAACATCACAGTTAA
79702838 CATAATCCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.57, C:0.17, G:0.09, T:0.17
Consensus pattern (23 bp):
AAAATGAACAACATCACAGTTAA
Found at i:79704100 original size:24 final size:23
Alignment explanation
Indices: 79704073--79704129 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
79704063 ACCCAATCCC
* * *
79704073 TAAACCCATAAACCCATTCCAACT
1 TAAACCCA-AAACCCAATACAAAT
79704097 TAAACCCCAAAACCCAATACAAAT
1 TAAA-CCCAAAACCCAATACAAAT
79704121 TAAACCCAA
1 TAAACCCAA
79704130 CTAACCCATC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 5 0.17
24 20 0.69
25 4 0.14
ACGTcount: A:0.49, C:0.35, G:0.00, T:0.16
Consensus pattern (23 bp):
TAAACCCAAAACCCAATACAAAT
Found at i:79705669 original size:22 final size:22
Alignment explanation
Indices: 79705644--79705709 Score: 73
Period size: 23 Copynumber: 2.9 Consensus size: 22
79705634 TATGTTTTCT
79705644 TTTAATATTTTATATATTATTA
1 TTTAATATTTTATATATTATTA
79705666 TTTACATATTTTGATATCATTAGTTA
1 TTTA-ATATTTT-ATAT-ATTA-TTA
*
79705692 TAT-AT-TTTTATATATTAT
1 TTTAATATTTTATATATTAT
79705710 GTATATTTCT
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
20 1 0.03
21 4 0.10
22 8 0.21
23 11 0.28
24 6 0.15
25 4 0.10
26 5 0.13
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (22 bp):
TTTAATATTTTATATATTATTA
Found at i:79705758 original size:26 final size:29
Alignment explanation
Indices: 79705711--79705763 Score: 76
Period size: 26 Copynumber: 1.9 Consensus size: 29
79705701 ATATATTATG
*
79705711 TATATTTCTTTTACTATTTCATGTATATA
1 TATATTTCTTTTACTATCTCATGTATATA
79705740 TATATTT-TTTT-C-ATCTCATGTATA
1 TATATTTCTTTTACTATCTCATGTATA
79705764 AATTTTTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 11 0.48
27 1 0.04
28 4 0.17
29 7 0.30
ACGTcount: A:0.26, C:0.11, G:0.04, T:0.58
Consensus pattern (29 bp):
TATATTTCTTTTACTATCTCATGTATATA
Found at i:79706059 original size:10 final size:10
Alignment explanation
Indices: 79706044--79706068 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
79706034 ATATGTTTAT
79706044 TATATATGTA
1 TATATATGTA
79706054 TATATATGTA
1 TATATATGTA
79706064 TATAT
1 TATAT
79706069 TTTTTAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (10 bp):
TATATATGTA
Found at i:79706059 original size:23 final size:23
Alignment explanation
Indices: 79706017--79706062 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
79706007 CATCTTATTA
79706017 TTATTATTATTATTAGTATATGT
1 TTATTATTATTATTAGTATATGT
79706040 TTATTATATATGTA-TA-TATATGT
1 TTATTAT-TAT-TATTAGTATATGT
79706063 ATATATTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 14 0.67
24 5 0.24
25 2 0.10
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.59
Consensus pattern (23 bp):
TTATTATTATTATTAGTATATGT
Found at i:79717755 original size:40 final size:39
Alignment explanation
Indices: 79717703--79717894 Score: 251
Period size: 40 Copynumber: 4.8 Consensus size: 39
79717693 TATAACCACA
79717703 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATATC-ACT
* *
79717743 CGCACAAATGCCTTC-GGTCTTAGCCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCACT
* * * *
79717782 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATATC-ACT
* *
79717822 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCACT
* *
79717862 AGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
79717895 CATTCAAATG
Statistics
Matches: 130, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
39 35 0.27
40 92 0.71
41 3 0.02
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCACT
Found at i:79717810 original size:79 final size:80
Alignment explanation
Indices: 79717703--79717894 Score: 332
Period size: 80 Copynumber: 2.4 Consensus size: 80
79717693 TATAACCACA
* *
79717703 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTC-GGTCTTAGC
1 AGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
79717767 CCGGATAAAATCACT
66 CCGGATAAAATCACT
* *
79717782 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 AGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
79717847 CCGGATAAAATCACT
66 CCGGATAAAATCACT
*
79717862 AGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 AGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
79717895 CATTCAAATG
Statistics
Matches: 105, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
79 51 0.49
80 54 0.51
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
AGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
CCGGATAAAATCACT
Found at i:79721032 original size:43 final size:42
Alignment explanation
Indices: 79720972--79721087 Score: 146
Period size: 43 Copynumber: 2.7 Consensus size: 42
79720962 AAAAAGAAGG
79720972 AAAAGATCAAGGTGAAAACCCGAAAAGGGCGTCTTGATGAAC
1 AAAAGATCAAGGTGAAAACCCGAAAAGGGCGTCTTGATGAAC
* * *
79721014 AAAAGGATCAAGGTGAAAACCTGAAAAGGGCGTTTTGATTAACAC
1 AAAA-GATCAAGGTGAAAACCCGAAAAGGGCGTCTTGA-TGA-AC
*
79721059 AAAAGAT-TAGGATGAAAACCC-AAAAGGGC
1 AAAAGATCAAGG-TGAAAACCCGAAAAGGGC
79721088 ATTCTAATGA
Statistics
Matches: 65, Mismatches: 5, Indels: 7
0.84 0.06 0.09
Matches are distributed among these distances:
42 4 0.06
43 42 0.65
44 13 0.20
45 6 0.09
ACGTcount: A:0.45, C:0.15, G:0.25, T:0.16
Consensus pattern (42 bp):
AAAAGATCAAGGTGAAAACCCGAAAAGGGCGTCTTGATGAAC
Found at i:79722024 original size:14 final size:14
Alignment explanation
Indices: 79722005--79722040 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
79721995 CGTCGAGGTA
*
79722005 TTTTCAAATTCTGT
1 TTTTCAAATTCTAT
79722019 TTTTCAAATTCTAT
1 TTTTCAAATTCTAT
79722033 TTTTCAAA
1 TTTTCAAA
79722041 AATCAACTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.28, C:0.14, G:0.03, T:0.56
Consensus pattern (14 bp):
TTTTCAAATTCTAT
Found at i:79722093 original size:89 final size:89
Alignment explanation
Indices: 79721949--79722444 Score: 440
Period size: 89 Copynumber: 5.7 Consensus size: 89
79721939 TACTTTTCAA
* * * *
79721949 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCTCACGTCGAGGTATTTTCAAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCAAGGTATTTTCAAAT
*
79722014 TCTGTTTTTCAAATTCTATTTTTC
66 TCTGTTTTTCAAATTATATTTTTC
*
79722038 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACACGCCAAGGTATTTTC-AA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACACGCCAAGGTATTTTCAAA
*
79722101 TTCCCGTTTTTC-----A-A------
65 TT-CTGTTTTTCAAATTATATTTTTC
* * * ** *
79722115 AAAAATCAACTCATGTTGCGAGAAGTGAGTTGAGCCTCAGGTCTCACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCAAGGTATTTTCAAAT
* * *
79722180 TCTGTTTTTCAATTTCTATTTGTC
66 TCTGTTTTTCAAATTATATTTTTC
* *
79722204 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACACTG---AGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACAC-GCCAAGGTATTTTCAAA
* * * **
79722266 TTCCGTTTTCCAACTTATGCTTTTC
65 TTCTGTTTTTCAAATTATATTTTTC
* * *
79722291 AAAAAGATCAATTTATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAA-GTATTTTC-
1 -AAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGC-CAAGGTATTTTCA
*
79722352 AATTCCTGATTTTTTTCAATTTATATTTTTC
63 AATT-CTG---TTTTTCAAATTATATTTTTC
* * **
79722383 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATT
1 ----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCAAGGTATT
79722445 GTTAGTTTAT
Statistics
Matches: 334, Mismatches: 40, Indels: 59
0.77 0.09 0.14
Matches are distributed among these distances:
77 60 0.18
78 5 0.01
83 2 0.01
86 1 0.00
87 35 0.10
88 13 0.04
89 150 0.45
90 2 0.01
92 16 0.05
94 34 0.10
95 6 0.02
96 10 0.03
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (89 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCAAGGTATTTTCAAAT
TCTGTTTTTCAAATTATATTTTTC
Found at i:79722144 original size:77 final size:77
Alignment explanation
Indices: 79722038--79722274 Score: 221
Period size: 77 Copynumber: 2.9 Consensus size: 77
79722028 TCTATTTTTC
* *
79722038 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACACGCCAAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG-TCACACGCCAAGGTATTTTCAAT
79722102 TCCCGTTTTTCAA
65 TCCCGTTTTTCAA
* * **
79722115 AAAAATCAACTCATGTTGCGAGAAGTGAGTTGAGCCTCAGGTCTCACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACACGCCAAGGTATTTTCAATT
* *
79722180 TCTGTTTTTCAATTTCTA
66 CCCGTTTTTC-A-----A
* *
79722198 TTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACACTG---AGGTATT
1 ------AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACAC-GCCAAGGTATT
*
79722260 TTCAATTTCCGTTTT
59 TTCAATTCCCGTTTT
79722275 CCAACTTATG
Statistics
Matches: 133, Mismatches: 13, Indels: 18
0.81 0.08 0.11
Matches are distributed among these distances:
77 64 0.48
78 3 0.02
83 1 0.01
87 21 0.16
89 43 0.32
90 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.33
Consensus pattern (77 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACACGCCAAGGTATTTTCAATT
CCCGTTTTTCAA
Found at i:79722145 original size:166 final size:166
Alignment explanation
Indices: 79721871--79722616 Score: 714
Period size: 166 Copynumber: 4.4 Consensus size: 166
79721861 GATTTCTGTC
* * *
79721871 TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTAAG--ACACGTTAAGGTATTTTCA
1 TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGTCACACGCTAAGGTATTTTCA
*** * *
79721934 ATTTTTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCTCACG-T
65 ATTCCCACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCT
*
79721998 CGAGGTATTTTCAAATTCTG-TTTTTCAAATTCTATTT
130 -GAGGTATTTTCAAATTCTGTTTTTTCAATTTCTATTT
*
79722035 TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCCAAGGTATTTTCA
1 TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGG-TCACACGCTAAGGTATTTTCA
** * * *
79722100 ATTCCCGTTTTTCAAAAAAATCAACTCATGTTGCGAGAAGTGAGTTGAGCCTCAGGTCTCACGCT
65 ATTCCCACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCT
*
79722165 GAGGTATTTTCAATTTCTG-TTTTTCAATTTCTATTT
130 GAGGTATTTTCAAATTCTGTTTTTTCAATTTCTATTT
* * * *
79722201 GTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACA--CTGAGGTATTTTCA
1 TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGTCACACGCTAAGGTATTTTCA
* * *
79722264 ATTTCCGTTTTCCAACTTATGCTTTTCAAAAAGATCAATTTATATTGCGAGAGGTGAGTTGAGCC
65 A--------TTCC--C--A--CTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* *
79722329 TCAGG--ACACGCTGAAGTATTTTC-AATTCCTGATTTTTTTCAATTTATATTT
116 TCAGGTCACACGCTGAGGTATTTTCAAATT-CTG--TTTTTTCAATTTCTATTT
* * *
79722380 TTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATT
1 TTC----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGTCACACGCTAAGGTATT
* *** * *
79722445 GTT-AGTTTATATTTTTC-AAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGG--AC
61 -TTCAATTCCCACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC
* * * * *
79722506 ACACTGAGGTATTTTCAATTTCTGCTTTTT-AATTTTTGTTT
125 ACGCTGAGGTATTTTCAAATTCTGTTTTTTCAATTTCTATTT
* ** *
79722547 TTCAAGAAAATCAA-TCCATATTGCGAGAGGTGAGTTGAGCCTTGGTTTACGTGCTGAGGTATTT
1 TTC-A-AAAATCAACT-CATATTGCGAGAGGTGAGTTGAGCCTTGG-TCACACGCTAAGGTATTT
79722611 TCAATT
62 TCAATT
79722617 TCTGTTCTTT
Statistics
Matches: 492, Mismatches: 55, Indels: 69
0.80 0.09 0.11
Matches are distributed among these distances:
163 1 0.00
164 60 0.12
165 50 0.10
166 149 0.30
167 15 0.03
168 5 0.01
170 57 0.12
171 8 0.02
172 4 0.01
173 1 0.00
174 1 0.00
175 3 0.01
176 19 0.04
177 2 0.00
178 43 0.09
179 18 0.04
183 43 0.09
185 11 0.02
186 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (166 bp):
TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGTCACACGCTAAGGTATTTTCAA
TTCCCACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTG
AGGTATTTTCAAATTCTGTTTTTTCAATTTCTATTT
Found at i:79722500 original size:259 final size:252
Alignment explanation
Indices: 79722196--79722678 Score: 648
Period size: 259 Copynumber: 1.9 Consensus size: 252
79722186 TTTCAATTTC
* *
79722196 TATTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACACTGAGGTATTT
1 TATTTGTCAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTATTT
**
79722261 TCAATTTCCG-TTTTCCAACTTATGCTTTTCAA-AAAGATCAATTTATATTGCGAGAGGTGAGTT
66 TCAATTTCCGCTTTT-CAACTTATGCTTTTCAAGAAA-ATCAATCCATATTGCGAGAGGTGAGTT
* * *
79722324 GAGCCTCAGG-ACACGCTGAAGTATTTTCAATTCCTGATTTTTTTCAATTTATATTTTTCAAAAA
129 GAGCCT-AGGTACACGCTGAAGTATTTTCAATTCCTG--TTCTTTCAAATTA-A-GTTTC--AAA
* * *
79722388 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTGTTAGTTT
187 AAAACCAACTCATATTCCGAGAGGTAAGTTGAGCCTCGGGTCGCACGCTGAGGTATTGTTAGTTT
79722453 A
252 A
*
79722454 TATTTTTCAAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTATT
1 TATTTGTC-AAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTATT
* * * * *
79722519 TTCAATTTCTGCTTTTTAATTTTTGTTTTTCAAGAAAATCAATCCATATTGCGAGAGGTGAGTTG
65 TTCAATTTCCGCTTTTCAACTTATGCTTTTCAAGAAAATCAATCCATATTGCGAGAGGTGAGTTG
* ** * *
79722584 AGCCTTGGTTTACGTGCTGAGGTATTTTCAATTTCTGTTCTTTCAAATTAAGTTTCAAAAAAACC
130 AGCCTAGG--TACACGCTGAAGTATTTTCAATTCCTGTTCTTTCAAATTAAGTTTCAAAAAAACC
79722649 AACTCATATTCCGAGAGGTAAGTTGAGCCT
193 AACTCATATTCCGAGAGGTAAGTTGAGCCT
79722679 TGGCTCACGT
Statistics
Matches: 198, Mismatches: 21, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
255 36 0.18
257 4 0.02
258 10 0.05
259 119 0.60
260 7 0.04
261 22 0.11
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (252 bp):
TATTTGTCAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTATTT
TCAATTTCCGCTTTTCAACTTATGCTTTTCAAGAAAATCAATCCATATTGCGAGAGGTGAGTTGA
GCCTAGGTACACGCTGAAGTATTTTCAATTCCTGTTCTTTCAAATTAAGTTTCAAAAAAACCAAC
TCATATTCCGAGAGGTAAGTTGAGCCTCGGGTCGCACGCTGAGGTATTGTTAGTTTA
Found at i:79722501 original size:170 final size:166
Alignment explanation
Indices: 79722286--79722588 Score: 448
Period size: 170 Copynumber: 1.8 Consensus size: 166
79722276 CAACTTATGC
* * * *
79722286 TTTTCAAAAAGATCAATTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAAGTATTTT
1 TTTTCAAAAAGATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACACACTGAAGTATTTT
*
79722351 CAATTCCTGATTTTTTTCAATTTATATTTTTCAAAAAAAAATCAA-CTCATATTGCGAGAGGTGA
66 CAATTCCTG--CTTTTT-AATTTATATTTTTC--AAAAAAATCAATC-CATATTGCGAGAGGTGA
79722415 GTTGAGCCTCGGGTCGCACGCTGAGGTATTGTTAGTTTATAT
125 GTTGAGCCTCGGGTCGCACGCTGAGGTATTGTTAGTTTATAT
*
79722457 TTTTCAAAAA-ATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTATTTT
1 TTTTCAAAAAGATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACACACTGAAGTATTTT
* * * *
79722521 CAATTTCTGCTTTTTAATTTTTGTTTTTCAAGAAAATCAATCCATATTGCGAGAGGTGAGTTGAG
66 CAATTCCTGCTTTTTAATTTATATTTTTCAAAAAAATCAATCCATATTGCGAGAGGTGAGTTGAG
79722586 CCT
131 CCT
79722589 TGGTTTACGT
Statistics
Matches: 121, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
165 36 0.30
166 1 0.01
167 12 0.10
168 5 0.04
170 57 0.47
171 10 0.08
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (166 bp):
TTTTCAAAAAGATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACACACTGAAGTATTTT
CAATTCCTGCTTTTTAATTTATATTTTTCAAAAAAATCAATCCATATTGCGAGAGGTGAGTTGAG
CCTCGGGTCGCACGCTGAGGTATTGTTAGTTTATAT
Found at i:79722673 original size:90 final size:89
Alignment explanation
Indices: 79722509--79722717 Score: 251
Period size: 90 Copynumber: 2.3 Consensus size: 89
79722499 TCAGGACACA
* ** * * *
79722509 CTGAGGTATTTTCAATTTCTGCTTTTTAATTTTTGTTTTTCAAGAAAATCAATCCATATTGCGAG
1 CTGAGGTATTTTCAATTTCTG-TTTTTAAATTAAG-TTTTCAAAAAAACCAATCCATATTCCGAG
* * *
79722574 AGGTGAGTTGAGCCTTGGTTTACGTG
64 AGGTAAGTTGAGCCTTGGCTCACGTG
79722600 CTGAGGTATTTTCAATTTCTGTTCTTTCAAATTAAG-TTTCAAAAAAACCAA-CTCATATTCCGA
1 CTGAGGTATTTTCAATTTCTGTT-TTT-AAATTAAGTTTTCAAAAAAACCAATC-CATATTCCGA
79722663 GAGGTAAGTTGAGCCTTGGCTCACGTG
63 GAGGTAAGTTGAGCCTTGGCTCACGTG
* * *
79722690 CTGAGCTATTTTCAATTGCTGTTATTAA
1 CTGAGGTATTTTCAATTTCTGTTTTTAA
79722718 TGTCTGTTTT
Statistics
Matches: 103, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
88 2 0.02
89 3 0.03
90 69 0.67
91 24 0.23
92 5 0.05
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.40
Consensus pattern (89 bp):
CTGAGGTATTTTCAATTTCTGTTTTTAAATTAAGTTTTCAAAAAAACCAATCCATATTCCGAGAG
GTAAGTTGAGCCTTGGCTCACGTG
Found at i:79724335 original size:6 final size:6
Alignment explanation
Indices: 79724263--79724353 Score: 53
Period size: 6 Copynumber: 15.3 Consensus size: 6
79724253 ATTTATTTAT
* * * * * * *
79724263 TTATT- TTATTT TTATTT TTAATA TTGTTA TTATTA GTCTTA ATATTA
1 TTATTA TTATTA TTATTA TTATTA TTATTA TTATTA TTATTA TTATTA
* * *
79724310 TTAATA CTT-TTA TT-TCTA TTATTA TTATTG TTATTA TTAATA TT
1 TTATTA -TTATTA TTAT-TA TTATTA TTATTA TTATTA TTATTA TT
79724354 CTGGTTATTA
Statistics
Matches: 67, Mismatches: 15, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
5 8 0.12
6 56 0.84
7 3 0.04
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (6 bp):
TTATTA
Found at i:79724338 original size:9 final size:9
Alignment explanation
Indices: 79724263--79724353 Score: 53
Period size: 9 Copynumber: 10.2 Consensus size: 9
79724253 ATTTATTTAT
79724263 TTATT-TTA
1 TTATTATTA
* *
79724271 TTTTTATTT
1 TTATTATTA
* *
79724280 TTAATATTG
1 TTATTATTA
79724289 TTATTATTA
1 TTATTATTA
* * *
79724298 GTCTTAATA
1 TTATTATTA
*
79724307 TTATTAATA
1 TTATTATTA
79724316 CTT-TTATT-
1 -TTATTATTA
79724324 TCTATTATTA
1 T-TATTATTA
*
79724334 TTATTGTTA
1 TTATTATTA
*
79724343 TTATTAATA
1 TTATTATTA
79724352 TT
1 TT
79724354 CTGGTTATTA
Statistics
Matches: 62, Mismatches: 16, Indels: 9
0.71 0.18 0.10
Matches are distributed among these distances:
7 1 0.02
8 5 0.08
9 53 0.85
10 3 0.05
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (9 bp):
TTATTATTA
Found at i:79724681 original size:22 final size:21
Alignment explanation
Indices: 79724642--79724706 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 21
79724632 TTTTCTTTTA
79724642 ATATTTTATATATTATTATGTAC
1 ATATTTT-TATA-TATTATGTAC
* *
79724665 ATATTTTGATATCATTA-GTTAT
1 ATATTTTTATAT-ATTATG-TAC
79724687 ATATTTTTATATATTATGTA
1 ATATTTTTATATATTATGTA
79724707 TATTTCTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
21 8 0.22
22 21 0.58
23 7 0.19
ACGTcount: A:0.34, C:0.03, G:0.06, T:0.57
Consensus pattern (21 bp):
ATATTTTTATATATTATGTAC
Found at i:79724752 original size:26 final size:29
Alignment explanation
Indices: 79724705--79724757 Score: 76
Period size: 26 Copynumber: 1.9 Consensus size: 29
79724695 ATATATTATG
*
79724705 TATATTTCTTTTACTATTTCATGTATATA
1 TATATTTCTTTTACTATCTCATGTATATA
79724734 TATATTT-TTTT-C-ATCTCATGTATA
1 TATATTTCTTTTACTATCTCATGTATA
79724758 AATTTTTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 11 0.48
27 1 0.04
28 4 0.17
29 7 0.30
ACGTcount: A:0.26, C:0.11, G:0.04, T:0.58
Consensus pattern (29 bp):
TATATTTCTTTTACTATCTCATGTATATA
Found at i:79725060 original size:10 final size:10
Alignment explanation
Indices: 79725045--79725069 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
79725035 ATATGTTTAT
79725045 TATATATGTA
1 TATATATGTA
79725055 TATATATGTA
1 TATATATGTA
79725065 TATAT
1 TATAT
79725070 TTTTTAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (10 bp):
TATATATGTA
Found at i:79725060 original size:23 final size:23
Alignment explanation
Indices: 79725018--79725063 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
79725008 CTTATTATTA
79725018 TTATTATTATTATTAGTATATGT
1 TTATTATTATTATTAGTATATGT
79725041 TTATTATATATGTA-TA-TATATGT
1 TTATTAT-TAT-TATTAGTATATGT
79725064 ATATATTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 14 0.67
24 5 0.24
25 2 0.10
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.59
Consensus pattern (23 bp):
TTATTATTATTATTAGTATATGT
Found at i:79728799 original size:24 final size:22
Alignment explanation
Indices: 79728752--79728799 Score: 60
Period size: 24 Copynumber: 2.1 Consensus size: 22
79728742 ACCATGGTGG
79728752 AATTGCACTTAAGGCTTGGGTA
1 AATTGCACTTAAGGCTTGGGTA
* *
79728774 AATTGCATGTTAAGGACTTGGTTA
1 AATTGCA-CTTAAGG-CTTGGGTA
79728798 AA
1 AA
79728800 CACTAATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 7 0.32
23 6 0.27
24 9 0.41
ACGTcount: A:0.31, C:0.10, G:0.25, T:0.33
Consensus pattern (22 bp):
AATTGCACTTAAGGCTTGGGTA
Found at i:79736328 original size:25 final size:25
Alignment explanation
Indices: 79736287--79736370 Score: 118
Period size: 25 Copynumber: 3.4 Consensus size: 25
79736277 CTGGAGGCCT
79736287 AGCCTCTTTT-AAT-AACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCAA
**
79736311 AGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTTCAATAAACTGGGGCAA
79736336 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCA-A
79736362 AGCCCTTTT
1 AGCCCTTTT
79736371 GCACTTCCTC
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
23 5 0.09
24 5 0.09
25 33 0.62
26 10 0.19
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (25 bp):
AGCCCTTTTCAATAAACTGGGGCAA
Found at i:79736453 original size:11 final size:11
Alignment explanation
Indices: 79736437--79736475 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
79736427 GCATTTCAAA
79736437 CATATCATGTG
1 CATATCATGTG
*
79736448 CATATCATAT-
1 CATATCATGTG
79736458 -ATATCATGTG
1 CATATCATGTG
79736468 CATATCAT
1 CATATCAT
79736476 ATCAATCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
9 8 0.33
11 16 0.67
ACGTcount: A:0.33, C:0.18, G:0.10, T:0.38
Consensus pattern (11 bp):
CATATCATGTG
Found at i:79736463 original size:9 final size:10
Alignment explanation
Indices: 79736437--79736496 Score: 54
Period size: 9 Copynumber: 6.1 Consensus size: 10
79736427 GCATTTCAAA
*
79736437 CATATCATGT
1 CATATCATAT
79736447 GCATATCATAT
1 -CATATCATAT
*
79736458 -ATATCATGT
1 CATATCATAT
79736467 GCATATCATAT
1 -CATATCATAT
*
79736478 CA-ATCATGT
1 CATATCATAT
79736487 -ATATCATAT
1 CATATCATAT
79736496 C
1 C
79736497 CAACGTATCA
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
8 1 0.03
9 20 0.50
10 2 0.05
11 17 0.43
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.38
Consensus pattern (10 bp):
CATATCATAT
Found at i:79736475 original size:20 final size:20
Alignment explanation
Indices: 79736420--79736495 Score: 95
Period size: 20 Copynumber: 3.9 Consensus size: 20
79736410 TTATGAATAC
* * *
79736420 ATCATGTGCATTTCAAACAT
1 ATCATGTGCATATCATATAT
79736440 ATCATGTGCATATCATATAT
1 ATCATGTGCATATCATATAT
79736460 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATAT-AT
79736480 ATCATGT--ATATCATAT
1 ATCATGTGCATATCATAT
79736496 CCAACGTATC
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
18 9 0.17
20 42 0.81
21 1 0.02
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (20 bp):
ATCATGTGCATATCATATAT
Found at i:79744427 original size:26 final size:26
Alignment explanation
Indices: 79744344--79744478 Score: 163
Period size: 26 Copynumber: 5.3 Consensus size: 26
79744334 TTGGAGGCCT
79744344 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
** *
79744368 AGCCC-TTTCGGTAAACCGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
79744392 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
79744418 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
* *
79744444 AGCCCTTCTCAATAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
79744470 AGCCCTTTT
1 AGCCCTTTT
79744479 GCACTTCCTC
Statistics
Matches: 94, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
22 3 0.03
23 2 0.02
24 19 0.20
25 15 0.16
26 55 0.59
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:79744460 original size:52 final size:51
Alignment explanation
Indices: 79744357--79744478 Score: 194
Period size: 52 Copynumber: 2.4 Consensus size: 51
79744347 CTCTTTTAAT
*
79744357 AACTGGGGCA-AAGCCC-TTTCGGTAAACCGGGGCAAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACCGGGGCAAAGCCCTTCTCAATA
*
79744406 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTCTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACCGGGGCA-AAGCCCTTCTCAATA
*
79744458 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
79744479 GCACTTCCTC
Statistics
Matches: 67, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
49 10 0.15
50 6 0.09
51 17 0.25
52 34 0.51
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (51 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACCGGGGCAAAGCCCTTCTCAATA
Done.