Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 243 of 333
Found at i:80050490 original size:66 final size:66
Alignment explanation
Indices: 80050416--80050557 Score: 203
Period size: 66 Copynumber: 2.2 Consensus size: 66
80050406 TCGTGTGACC
* * * *
80050416 CAAGTCAGTAACCTCCCTAGTTTTCCCATGGCCATGGCACACGGGTGTGTCTCCGGTCGTGTGGT
1 CAAGTCAGTAACCTCCCTAGTTTTCCCACGGCCATGGCACACGGGCGTGTCTCCGGCCATGTGGT
80050481 A
66 A
* ** * *
80050482 CAAGTCAGTGACCTCTTTAGTTTTTCCACGGCTATGGCACACGGGCGTGTCTCCGGCCATGTGGT
1 CAAGTCAGTAACCTCCCTAGTTTTCCCACGGCCATGGCACACGGGCGTGTCTCCGGCCATGTGGT
80050547 A
66 A
80050548 CAAGTCAGTA
1 CAAGTCAGTA
80050558 TCTATGCCTT
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.18, C:0.27, G:0.27, T:0.27
Consensus pattern (66 bp):
CAAGTCAGTAACCTCCCTAGTTTTCCCACGGCCATGGCACACGGGCGTGTCTCCGGCCATGTGGT
A
Found at i:80050572 original size:66 final size:66
Alignment explanation
Indices: 80050416--80050581 Score: 167
Period size: 66 Copynumber: 2.5 Consensus size: 66
80050406 TCGTGTGACC
* * * * * * * * * *
80050416 CAAGTCAGTAACCTCCCTAGTTTTCCCATGGCCATGGCACACGGGTGTGTCTCCGGTCGTGTGGT
1 CAAGTCAGTGACATCCTTATTTTTCACACGGCTATGGCACACGGGCGTGTCTCCGGCCATGTGGT
80050481 A
66 A
* *
80050482 CAAGTCAGTGACCTCTTTAGTTTTTC-CACGGCTATGGCACACGGGCGTGTCTCCGGCCATGTGG
1 CAAGTCAGTGACATCCTTA-TTTTTCACACGGCTATGGCACACGGGCGTGTCTCCGGCCATGTGG
80050546 TA
65 TA
80050548 CAAGTCAGT-ATCTATGCCTT-TTTTTCACACGGCT
1 CAAGTCAGTGA-C-AT-CCTTATTTTTCACACGGCT
80050582 TTTGATACAG
Statistics
Matches: 84, Mismatches: 11, Indels: 9
0.81 0.11 0.09
Matches are distributed among these distances:
65 1 0.01
66 67 0.80
67 13 0.15
68 3 0.04
ACGTcount: A:0.17, C:0.28, G:0.25, T:0.30
Consensus pattern (66 bp):
CAAGTCAGTGACATCCTTATTTTTCACACGGCTATGGCACACGGGCGTGTCTCCGGCCATGTGGT
A
Found at i:80056038 original size:9 final size:9
Alignment explanation
Indices: 80056020--80056050 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
80056010 AGAAAACTCC
*
80056020 TAAACAACT
1 TAAACTACT
80056029 TAAACTACT
1 TAAACTACT
80056038 TAAACTACT
1 TAAACTACT
80056047 TAAA
1 TAAA
80056051 AATTATCCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.52, C:0.19, G:0.00, T:0.29
Consensus pattern (9 bp):
TAAACTACT
Found at i:80058739 original size:40 final size:40
Alignment explanation
Indices: 80058660--80058836 Score: 218
Period size: 40 Copynumber: 4.5 Consensus size: 40
80058650 AAACCAAGTA
* * * * *
80058660 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCCAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
80058699 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
80058739 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
80058779 CCTTCGGG-CTTAGCCC-GAAATTAGTTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
80058818 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
80058837 TTATCATCCG
Statistics
Matches: 121, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
38 3 0.02
39 45 0.37
40 72 0.60
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:80058793 original size:79 final size:80
Alignment explanation
Indices: 80058660--80058836 Score: 227
Period size: 79 Copynumber: 2.2 Consensus size: 80
80058650 AAACCAAGTA
* * * * **
80058660 CCTTCGGAATTTAG-CCGGATATAGCTACTTGCTCCAATGCCTTCGGGACTTAGCCCG-GTTATA
1 CCTTCGGAACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGAAAT-TA
*
80058723 GTAACTCGCACAAATG
65 GTAACTAGCACAAATG
80058739 CCTTCGGAACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGG-CTTAGCCCGAAATTA
1 CCTTCGGAACTTAGCCCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTA
*
80058802 GTTACTAGCACAAATG
65 GTAACTAGCACAAATG
*
80058818 CCTTCGGGACTTAGCCCGG
1 CCTTCGGAACTTAGCCCGG
80058837 TTATCATCCG
Statistics
Matches: 86, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
79 57 0.66
80 29 0.34
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CCTTCGGAACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTAG
TAACTAGCACAAATG
Found at i:80066066 original size:40 final size:40
Alignment explanation
Indices: 80065999--80066203 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
80065989 CCTTCGGAAT
* *
80065999 TTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGAGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGAGAC
* *
80066038 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGAC
*
80066078 TTAGCCCGAATATAGTAACTCGCACAAATGCCTTC-AGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGA-GAC
*
80066118 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-AGGC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGAC
* * * *
80066157 TTAGCCCGGA-ATTAGTCACTAGCACAAATGGCTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGAGAC
80066197 TTAGCCC
1 TTAGCCC
80066204 AGTTATCATC
Statistics
Matches: 147, Mismatches: 14, Indels: 9
0.86 0.08 0.05
Matches are distributed among these distances:
38 1 0.01
39 37 0.25
40 109 0.74
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGAC
Found at i:80074798 original size:35 final size:35
Alignment explanation
Indices: 80074752--80074893 Score: 239
Period size: 35 Copynumber: 4.0 Consensus size: 35
80074742 ATAATCTTCA
*
80074752 ATGATATGCAATCTTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
*
80074788 ATGATTGCAATCTTAGCTATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
80074823 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
80074858 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
80074894 AGATATGATT
Statistics
Matches: 101, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
35 83 0.82
36 5 0.05
37 13 0.13
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:80075284 original size:21 final size:21
Alignment explanation
Indices: 80075242--80075302 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
80075232 TGTAAATTAT
*
80075242 TATATATTATAT-TTTAACTTA
1 TATATATTATATCTTT-ATTTA
*
80075263 TATATCTTATATCTTTATTTA
1 TATATATTATATCTTTATTTA
* *
80075284 TTTATATTATA-CATTATTT
1 TATATATTATATCTTTATTT
80075303 TAAAAACTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
20 7 0.21
21 24 0.71
22 3 0.09
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.61
Consensus pattern (21 bp):
TATATATTATATCTTTATTTA
Found at i:80081181 original size:6 final size:6
Alignment explanation
Indices: 80081166--80081220 Score: 53
Period size: 6 Copynumber: 9.5 Consensus size: 6
80081156 CTTCTATTTC
* * *
80081166 AAAA-A AAAAGA AAAAG- AAAAGA AAAAGA GAAA-A AAAATA AAGAGAA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAG-A
80081212 AAAAGA AAA
1 AAAAGA AAA
80081221 GATGGAAAGG
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
5 13 0.32
6 23 0.56
7 5 0.12
ACGTcount: A:0.84, C:0.00, G:0.15, T:0.02
Consensus pattern (6 bp):
AAAAGA
Found at i:80081192 original size:17 final size:17
Alignment explanation
Indices: 80081166--80081222 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 17
80081156 CTTCTATTTC
80081166 AAAA-AAAAAGAAAAAG
1 AAAAGAAAAAGAAAAAG
80081182 AAAAGAAAAAGAGAAAA-
1 AAAAGAAAAAGA-AAAAG
* *
80081199 AAAATAAAGAGAAAAAAG
1 AAAAGAAAAAG-AAAAAG
80081217 AAAAGA
1 AAAAGA
80081223 TGGAAAGGCC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
16 4 0.12
17 20 0.59
18 10 0.29
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (17 bp):
AAAAGAAAAAGAAAAAG
Found at i:80081200 original size:15 final size:15
Alignment explanation
Indices: 80081182--80081220 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
80081172 AAAGAAAAAG
80081182 AAAAGAAAAAGAGAA
1 AAAAGAAAAAGAGAA
80081197 AAAA-AATAAAGAGAA
1 AAAAGAA-AAAGAGAA
80081212 AAAAGAAAA
1 AAAAGAAAA
80081221 GATGGAAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 2 0.09
15 18 0.82
16 2 0.09
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (15 bp):
AAAAGAAAAAGAGAA
Found at i:80081201 original size:22 final size:22
Alignment explanation
Indices: 80081166--80081220 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
80081156 CTTCTATTTC
80081166 AAAAAA-AAAGAAAAAGAAA-AG
1 AAAAAAGAAA-AAAAAGAAAGAG
*
80081187 AAAAAGAGAAAAAAAATAAAGAG
1 AAAAA-AGAAAAAAAAGAAAGAG
80081210 AAAAAAGAAAA
1 AAAAAAGAAAA
80081221 GATGGAAAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 5 0.17
22 15 0.50
23 10 0.33
ACGTcount: A:0.84, C:0.00, G:0.15, T:0.02
Consensus pattern (22 bp):
AAAAAAGAAAAAAAAGAAAGAG
Found at i:80081211 original size:28 final size:29
Alignment explanation
Indices: 80081167--80081222 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
80081157 TTCTATTTCA
*
80081167 AAAAAAAAGAAAAAGAAAAGA-AAAAGAG
1 AAAAAAAAGAAAAAGAAAAAAGAAAAGAG
* *
80081195 AAAAAAAATAAAGAGAAAAAAGAAAAGA
1 AAAAAAAAGAAAAAGAAAAAAGAAAAGA
80081223 TGGAAAGGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 18 0.75
29 6 0.25
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (29 bp):
AAAAAAAAGAAAAAGAAAAAAGAAAAGAG
Found at i:80082147 original size:44 final size:44
Alignment explanation
Indices: 80082099--80082278 Score: 170
Period size: 44 Copynumber: 4.1 Consensus size: 44
80082089 TCAAAGAAAC
* *
80082099 AAGATTTGGCATCCCTATGTTTATCGGGAACAGATCGAAGATAG
1 AAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAG
* * * * * * **
80082143 AAGATCTGACATTCCTGTGCTTATAGCGAAGCAGATTGAAGATTT
1 AAGATTTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAG
* *
80082188 CAGCA--TGGCATCCC-GTGTTTATAGGGAACA-AGTTGAAGATAG
1 AAG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAG
* *
80082230 TAGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAG
1 AAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAG
*
80082274 CAGAT
1 AAGAT
80082279 CTAACCTTCA
Statistics
Matches: 108, Mismatches: 21, Indels: 14
0.76 0.15 0.10
Matches are distributed among these distances:
41 2 0.02
42 12 0.11
43 20 0.19
44 59 0.55
45 14 0.13
46 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (44 bp):
AAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAG
Found at i:80082254 original size:87 final size:87
Alignment explanation
Indices: 80082105--80082271 Score: 205
Period size: 87 Copynumber: 1.9 Consensus size: 87
80082095 AAACAAGATT
*
80082105 TGGCATCCCTATGTTTATCGGGAACAGATCGAAGATAGAAGATCTGACATTCCTGTGCTTATAGC
1 TGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAGAAGATCTGACATTCCTGTGCTTATAGC
*
80082170 GAAGCAGATTGAAGATTTCAGCA
66 GAA-CAGATCGAAGATTTCAGCA
* * * * * *
80082193 TGGCATCCC-GTGTTTATAGGGAACA-AGTTGAAGATAGTAGATTTGGCA-TCCTTGTGTTTATA
1 TGGCATCCCTATGTTTATAGGGAACAGA-TCGAAGATAGAAGATCTGACATTCC-TGTGCTTATA
*
80082255 GGGAACAGATCGAAGAT
64 GCGAACAGATCGAAGAT
80082272 AGCAGATCTA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
86 15 0.22
87 44 0.65
88 9 0.13
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (87 bp):
TGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAGAAGATCTGACATTCCTGTGCTTATAGC
GAACAGATCGAAGATTTCAGCA
Found at i:80082478 original size:119 final size:119
Alignment explanation
Indices: 80082270--80082863 Score: 981
Period size: 119 Copynumber: 5.0 Consensus size: 119
80082260 CAGATCGAAG
80082270 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* * * * * *
80082335 TTACAAGGAACAGATCGAGGACATAGTAGATTTGACTTTTAGACATTCTCAAAG
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
*
80082389 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGGTCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
*
80082454 TTACAAAGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * *
80082508 ATAGCAGATCTAACCTTCAGATGTTTATACTAAAGAAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
80082573 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* *
80082627 ATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
80082692 TTACAAGAAAGAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * * *
80082746 ATAGCAGATCTAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGC
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* * * *
80082811 TTACAAGGAACAAATCGAGGACATGGCAGATATGACTCTCAAATGTTCTCAAA
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
80082864 CAGACTCAAG
Statistics
Matches: 445, Mismatches: 30, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
119 445 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30
Consensus pattern (119 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
Found at i:80082897 original size:83 final size:83
Alignment explanation
Indices: 80082787--80083139 Score: 591
Period size: 83 Copynumber: 4.2 Consensus size: 83
80082777 GAAGCAGATC
*
80082787 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATGGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
80082852 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* *
80082870 CAAGATGATTTGGCATCCTTGTTCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
80082935 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
*
80082953 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAG-TCATGACTCTC
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGAT-ATGACTCTC
80083017 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
* * *
80083036 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
80083101 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
* * *
80083120 CAGGATGATTTGACATCCTT
1 CAAGATGGTTTGGCATCCTT
80083140 ACAAATCGAA
Statistics
Matches: 256, Mismatches: 11, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
82 1 0.00
83 177 0.69
84 77 0.30
85 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:80083545 original size:18 final size:18
Alignment explanation
Indices: 80083522--80083637 Score: 164
Period size: 18 Copynumber: 6.5 Consensus size: 18
80083512 ATGGAAATAT
* *
80083522 AATCTTAAATATGATTGC
1 AATCTTAGATATGATTAC
*
80083540 AATCTTAGATATGA-TAA
1 AATCTTAGATATGATTAC
*
80083557 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
80083575 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
80083592 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
80083610 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TAC
80083629 AATCTTAGA
1 AATCTTAGA
80083638 AGATATGATT
Statistics
Matches: 87, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
17 31 0.36
18 45 0.52
19 11 0.13
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:80083561 original size:35 final size:35
Alignment explanation
Indices: 80083522--80083637 Score: 196
Period size: 35 Copynumber: 3.3 Consensus size: 35
80083512 ATGGAAATAT
*
80083522 AATCTTAAATATGATTGCAATCTTAGATATGATAA
1 AATCTTAGATATGATTGCAATCTTAGATATGATAA
*
80083557 AATCTTAGATATGATTGCAATCTTAGATATGATAC
1 AATCTTAGATATGATTGCAATCTTAGATATGATAA
80083592 AATCTTAGATATGATTGCAATCTTAGATATGATATA
1 AATCTTAGATATGATTGCAATCTTAGATATGATA-A
80083628 CAATCTTAGA
1 -AATCTTAGA
80083638 AGATATGATT
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
35 67 0.88
37 9 0.12
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (35 bp):
AATCTTAGATATGATTGCAATCTTAGATATGATAA
Found at i:80084031 original size:21 final size:21
Alignment explanation
Indices: 80083989--80084123 Score: 65
Period size: 21 Copynumber: 6.7 Consensus size: 21
80083979 AAATTATTAT
*
80083989 TATATATTATAT-TTTAACTTA
1 TATATATTATATATTT-ATTTA
*
80084010 TATATCTTATATATTTATTTA
1 TATATATTATATATTTATTTA
* *
80084031 TTTATATTATACA-TTATTT-
1 TATATATTATATATTTATTTA
* * * * *
80084050 TAAAAACTTACATTTTTATAT-
1 TATATA-TTATATATTTATTTA
*
80084071 TATATATTATA-AATTATTTCA
1 TATATATTATATATTTATTT-A
80084092 T-T-TATTAT-TA-TT-TTTA
1 TATATATTATATATTTATTTA
*
80084108 TATATTATCATATATT
1 TATA-TATTATATATT
80084124 ATCTATTTTA
Statistics
Matches: 84, Mismatches: 19, Indels: 22
0.67 0.15 0.18
Matches are distributed among these distances:
16 2 0.02
17 4 0.05
18 2 0.02
19 20 0.24
20 17 0.20
21 36 0.43
22 3 0.04
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (21 bp):
TATATATTATATATTTATTTA
Found at i:80084133 original size:26 final size:25
Alignment explanation
Indices: 80084066--80084135 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 25
80084056 CTTACATTTT
*
80084066 TATATTATATATTATAAATTATTTCA
1 TATATTAT-TATTTTAAATTATTTCA
* *
80084092 TTTATTATTATTTT-TATATATTATCA
1 TATATTATTATTTTAAAT-TATT-TCA
80084118 TATATTATCTATTTTAAA
1 TATATTAT-TATTTTAAA
80084136 ATTCACTATT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
24 2 0.06
25 9 0.26
26 17 0.49
27 6 0.17
28 1 0.03
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (25 bp):
TATATTATTATTTTAAATTATTTCA
Found at i:80099153 original size:13 final size:13
Alignment explanation
Indices: 80099135--80099159 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80099125 AGACCGTGTG
80099135 AAGGACACGGGCC
1 AAGGACACGGGCC
80099148 AAGGACACGGGC
1 AAGGACACGGGC
80099160 ATGTGCTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.28, G:0.40, T:0.00
Consensus pattern (13 bp):
AAGGACACGGGCC
Found at i:80112782 original size:145 final size:145
Alignment explanation
Indices: 80112519--80112812 Score: 552
Period size: 145 Copynumber: 2.0 Consensus size: 145
80112509 GCCCTAGTCA
* *
80112519 GAAAGTGGTTTCGGGATCACAAAACCGAGTCCCAAAAATAATCAAATGTTATATTATGTGTTTAT
1 GAAAGTAGTTTCGGGATCACAAAACCAAGTCCCAAAAATAATCAAATGTTATATTATGTGTTTAT
80112584 TTCATGTGAAAGTGCATGTGTGAAAATACCATGCTTTGATTCTGCCATTTGTGAGTGAAATTATG
66 TTCATGTGAAAGTGCATGTGTGAAAATACCATGCTTTGATTCTGCCATTTGTGAGTGAAATTATG
80112649 AAATAGGACCTATGT
131 AAATAGGACCTATGT
*
80112664 GAAAGTAGTTTCGGGATCACAAAACCAAGTCCCAAAAATAATCAAATGTTATATTATTTGTTTAT
1 GAAAGTAGTTTCGGGATCACAAAACCAAGTCCCAAAAATAATCAAATGTTATATTATGTGTTTAT
*
80112729 TTCATGTGAAAGTGCTTGTGTGAAAATACCATGCTTTGATTCTGCCATTTGTGAGTGAAATTATG
66 TTCATGTGAAAGTGCATGTGTGAAAATACCATGCTTTGATTCTGCCATTTGTGAGTGAAATTATG
80112794 AAATAGGACCTATGT
131 AAATAGGACCTATGT
80112809 GAAA
1 GAAA
80112813 ATTTTTGAAA
Statistics
Matches: 145, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
145 145 1.00
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (145 bp):
GAAAGTAGTTTCGGGATCACAAAACCAAGTCCCAAAAATAATCAAATGTTATATTATGTGTTTAT
TTCATGTGAAAGTGCATGTGTGAAAATACCATGCTTTGATTCTGCCATTTGTGAGTGAAATTATG
AAATAGGACCTATGT
Found at i:80115368 original size:43 final size:43
Alignment explanation
Indices: 80115314--80115432 Score: 202
Period size: 43 Copynumber: 2.8 Consensus size: 43
80115304 CTGGTATTAT
80115314 ATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGA
1 ATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGA
* *
80115357 ATTCGGGCCTTCGTGCCTAGTAGGCTTAGTGCCGGTGATGTGT
1 ATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGA
* *
80115400 ATTCGGGCCTTCGTGCCTAGCAGGTTTCGTGCC
1 ATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCC
80115433 TAGCAGGTTT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 71 1.00
ACGTcount: A:0.12, C:0.24, G:0.34, T:0.30
Consensus pattern (43 bp):
ATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGA
Found at i:80115430 original size:16 final size:16
Alignment explanation
Indices: 80115409--80115448 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
80115399 TATTCGGGCC
80115409 TTCGTGCCTAGCAGGT
1 TTCGTGCCTAGCAGGT
80115425 TTCGTGCCTAGCAGGT
1 TTCGTGCCTAGCAGGT
80115441 TTCGTGCC
1 TTCGTGCC
80115449 GGTGATGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.10, C:0.28, G:0.30, T:0.33
Consensus pattern (16 bp):
TTCGTGCCTAGCAGGT
Found at i:80115458 original size:59 final size:59
Alignment explanation
Indices: 80115366--80115482 Score: 207
Period size: 59 Copynumber: 2.0 Consensus size: 59
80115356 AATTCGGGCC
*
80115366 TTCGTGCCTAGTAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGT
1 TTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGT
* *
80115425 TTCGTGCCTAGCAGGTTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
1 TTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
80115483 CGTAATGCCG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.11, C:0.23, G:0.34, T:0.32
Consensus pattern (59 bp):
TTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGT
Found at i:80140231 original size:35 final size:35
Alignment explanation
Indices: 80140131--80140299 Score: 169
Period size: 35 Copynumber: 4.8 Consensus size: 35
80140121 AGGTAAGTAT
* *
80140131 ATGTGAGGTTATATTGAACTTGTGTATTCGATTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
*
80140166 ATGTGAGCTTATATTGAACTTGTATATTCGGTTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* ** *
80140201 ATGTGAGGTTATATTGAATTTGTATATTCGGCCAT
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* * * ** *
80140236 ATGAGATGTT-TATTTGAACTTGAACCTTAGGTTAC
1 ATGTGAGGTTATA-TTGAACTTGTATATTCGGTTAC
* * * *
80140271 ATGTAATGATATATTGAACTTATATATTC
1 ATGTGAGGTTATATTGAACTTGTATATTC
80140300 AGCCATATGA
Statistics
Matches: 106, Mismatches: 26, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
34 2 0.02
35 102 0.96
36 2 0.02
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (35 bp):
ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
Found at i:80140253 original size:70 final size:70
Alignment explanation
Indices: 80140131--80140309 Score: 189
Period size: 70 Copynumber: 2.6 Consensus size: 70
80140121 AGGTAAGTAT
* *** * * * * *
80140131 ATGTGAGGTTATATTGAACTTGTGTATTCGATTACATGTGAGCTTATATTGAACTTGTATATTCG
1 ATGTGAGGTTATATTGAACTTGTATATTCGGCCATATGAGAGCTTATATTGAACTTGAACATTAG
80140196 GTTAC
66 GTTAC
* * *
80140201 ATGTGAGGTTATATTGAATTTGTATATTCGGCCATATGAGATGTTTAT-TTGAACTTGAACCTTA
1 ATGTGAGGTTATATTGAACTTGTATATTCGGCCATATGAGA-GCTTATATTGAACTTGAACATTA
80140265 GGTTAC
65 GGTTAC
* * * * *
80140271 ATGTAATGATATATTGAACTTATATATTCAGCCATATGA
1 ATGTGAGGTTATATTGAACTTGTATATTCGGCCATATGA
80140310 AATAATATAA
Statistics
Matches: 90, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
70 85 0.94
71 5 0.06
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (70 bp):
ATGTGAGGTTATATTGAACTTGTATATTCGGCCATATGAGAGCTTATATTGAACTTGAACATTAG
GTTAC
Found at i:80154674 original size:13 final size:13
Alignment explanation
Indices: 80154656--80154684 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
80154646 GGTTGTTTAT
80154656 TAAACTAATTAAC
1 TAAACTAATTAAC
80154669 TAAACTAATTAAC
1 TAAACTAATTAAC
80154682 TAA
1 TAA
80154685 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:80155740 original size:10 final size:10
Alignment explanation
Indices: 80155708--80155741 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
80155698 CGTTTTGTCC
80155708 CTTTTTGGCT
1 CTTTTTGGCT
80155718 CGTTTTTGGCT
1 C-TTTTTGGCT
*
80155729 CTTTTTGACT
1 CTTTTTGGCT
80155739 CTT
1 CTT
80155742 GGTGCTCTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.03, C:0.21, G:0.18, T:0.59
Consensus pattern (10 bp):
CTTTTTGGCT
Found at i:80160052 original size:33 final size:33
Alignment explanation
Indices: 80160010--80160073 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
80160000 TGTACAAAGA
*
80160010 TAGAATATTCAAAATAAATAAAATCATAAGACG
1 TAGAATATTCAAAATAAAGAAAATCATAAGACG
80160043 TAGAATATTCAAAATAAAGAAAATCATAAGA
1 TAGAATATTCAAAATAAAGAAAATCATAAGA
80160074 GGGAAAGAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.59, C:0.08, G:0.09, T:0.23
Consensus pattern (33 bp):
TAGAATATTCAAAATAAAGAAAATCATAAGACG
Found at i:80165355 original size:93 final size:93
Alignment explanation
Indices: 80165240--80165410 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
80165230 GCCCCTAAGT
* * *
80165240 GAACTCGGACTCAACTTAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
80165305 TGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
80165333 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80165398 CGAGTTCGGATGC
66 CGAGTTCGGATGC
80165411 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:80165398 original size:46 final size:46
Alignment explanation
Indices: 80165235--80165407 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
80165225 AACCCGCCCC
* * * *
80165235 TAAGTGAACTCGGACTCAACTTAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * *
80165281 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
80165329 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
80165374 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
80165408 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 59 0.57
47 28 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:80165865 original size:30 final size:30
Alignment explanation
Indices: 80165831--80165890 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
80165821 ATTTAATACG
80165831 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
* * *
80165861 AACTTTTACATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
80165891 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.35, C:0.25, G:0.03, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:80168227 original size:40 final size:40
Alignment explanation
Indices: 80168143--80168326 Score: 178
Period size: 40 Copynumber: 4.6 Consensus size: 40
80168133 TTGAATGCTA
* * * *
80168143 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA-
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTA-AC
** *
80168183 TCCGGACTAAGAT-CCGAAGGCATTTTTGCGAGTTATTAAC
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAC
* * * *
80168223 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAC
* *
80168263 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAC
*
80168303 TCCGGGTTACGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
80168327 GTATGAGTTA
Statistics
Matches: 121, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 3 0.02
40 111 0.92
41 7 0.06
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAC
Found at i:80168280 original size:80 final size:81
Alignment explanation
Indices: 80168142--80168323 Score: 214
Period size: 80 Copynumber: 2.3 Consensus size: 81
80168132 ATTGAATGCT
* *
80168142 ATCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCAT
1 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCAT
**
80168206 TTTTGCGAGTTATT-AA
66 TCGTGCGAGTT-TTAAA
* **
80168222 CTCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGG
80168283 CATTCGTGCGAGTTTTAAA
63 CATTCGTGCGAGTTTTAAA
*
80168302 ATCCGGGTTACGTCCCGAAGGC
1 ATCCGGGTTAAGTCCCGAAGGC
80168324 ATTGTATGAG
Statistics
Matches: 88, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
79 4 0.05
80 75 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (81 bp):
ATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCAT
TCGTGCGAGTTTTAAA
Found at i:80168347 original size:39 final size:38
Alignment explanation
Indices: 80168144--80168363 Score: 156
Period size: 40 Copynumber: 5.6 Consensus size: 38
80168134 TGAATGCTAT
* * * * *
80168144 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTA-AA
** * * *
80168184 CCGGACTAAGAT-CCGAAGGCATTTTTGCGAGTTATTAACT
1 CCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
80168224 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAA-A
*
80168264 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACT-AAA
* **
80168303 TCCGGGTTACGTCCCGAAGGCATTGTATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTA-AA
* *
80168343 CCGGGCTATGTCCCGAAGGCA
1 CCGGGTTAAGTCCCGAAGGCA
80168364 CTTGAACGAG
Statistics
Matches: 147, Mismatches: 23, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
39 33 0.22
40 107 0.73
41 7 0.05
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:80176187 original size:39 final size:39
Alignment explanation
Indices: 80176081--80176220 Score: 158
Period size: 39 Copynumber: 3.5 Consensus size: 39
80176071 AATTGAATGC
* *
80176081 TTCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACT-A
1 TTCCGGGCTAAGT-CCGAAGGCCTTTGTGC-GAGTTACTAA
* * *
80176120 TATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTATTAA
1 T-TCCGGGCTAAG-TCCGAAGGCCTTTGTGCGAGTTACTAA
* *
80176161 TTCCGGGTTAAGTCCGAAGGCCTTTGTGCGAGATACTAA
1 TTCCGGGCTAAGTCCGAAGGCCTTTGTGCGAGTTACTAA
*
80176200 TTCCGGGTTAAGTCCGAAGGC
1 TTCCGGGCTAAGTCCGAAGGC
80176221 ATTGTTGATT
Statistics
Matches: 87, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
39 46 0.53
40 31 0.36
41 10 0.11
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (39 bp):
TTCCGGGCTAAGTCCGAAGGCCTTTGTGCGAGTTACTAA
Found at i:80183888 original size:78 final size:78
Alignment explanation
Indices: 80183753--80183926 Score: 187
Period size: 78 Copynumber: 2.2 Consensus size: 78
80183743 TTGAATGCTG
*
80183753 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAG-CCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAA-GCATTT
80183818 GTGCGAGATACTAAT
64 GTGCGAGATACTAAT
* * * **
80183833 TCCGGGCTAAG-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGCATTT
1 TCCGGGCTAAGCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGCATTT
80183895 GTGCGA-ATTACT-AT
64 GTGCGAGA-TACTAAT
*
80183909 AACCGGGCTAAGTCCCGA
1 -TCCGGGCTAAG-CCCGA
80183927 GGCATTGAAC
Statistics
Matches: 81, Mismatches: 7, Indels: 13
0.80 0.07 0.13
Matches are distributed among these distances:
76 3 0.04
77 27 0.33
78 29 0.36
79 11 0.14
80 11 0.14
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGCATTTGT
GCGAGATACTAAT
Found at i:80183900 original size:39 final size:40
Alignment explanation
Indices: 80183753--80183932 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 40
80183743 TTGAATGCTG
* * * *
80183753 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
80183793 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
80183833 TCCGGGCTAAG--CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
80183871 TCCGGGTTAAGTCCCGAA-GCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
80183911 -CCGGGCTAAGTCCCG-AGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
80183933 GAACGAGGAG
Statistics
Matches: 121, Mismatches: 13, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
38 36 0.30
39 37 0.31
40 40 0.33
41 8 0.07
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:80187056 original size:56 final size:56
Alignment explanation
Indices: 80186967--80187089 Score: 185
Period size: 56 Copynumber: 2.2 Consensus size: 56
80186957 TACATGTAAC
* *
80186967 CACATATAGATGCCACTATCCCAAACAGAGTCTTACTCGTAAACACATATCGGAAT
1 CACATATCGATACCACTATCCCAAACAGAGTCTTACTCGTAAACACATATCGGAAT
* *
80187023 CACATATCGATACCACTGTCCCAGACA-AGGTCTTACTCGTAAACACATATCGGAAT
1 CACATATCGATACCACTATCCCAAACAGA-GTCTTACTCGTAAACACATATCGGAAT
*
80187079 CACATAACGAT
1 CACATATCGAT
80187090 GCCATGGTCT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
55 1 0.02
56 60 0.98
ACGTcount: A:0.37, C:0.28, G:0.13, T:0.23
Consensus pattern (56 bp):
CACATATCGATACCACTATCCCAAACAGAGTCTTACTCGTAAACACATATCGGAAT
Found at i:80187103 original size:44 final size:44
Alignment explanation
Indices: 80187051--80187165 Score: 194
Period size: 44 Copynumber: 2.6 Consensus size: 44
80187041 TCCCAGACAA
*
80187051 GGTCTTACTCGTAAACACATATCGGAATCACATAACGATGCCAT
1 GGTCTTACTCGTAAACACATATCAGAATCACATAACGATGCCAT
* * *
80187095 GGTCTTACTCGTAAACACATGTCAGAATCATATATCGATGCCAT
1 GGTCTTACTCGTAAACACATATCAGAATCACATAACGATGCCAT
80187139 GGTCTTACTCGTAAACACATATCAGAA
1 GGTCTTACTCGTAAACACATATCAGAA
80187166 CCCTATGTCA
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 66 1.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (44 bp):
GGTCTTACTCGTAAACACATATCAGAATCACATAACGATGCCAT
Found at i:80198546 original size:14 final size:15
Alignment explanation
Indices: 80198522--80198551 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
80198512 GGATATCAAA
80198522 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
80198537 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
80198551 A
1 A
80198552 AGTTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:80200311 original size:40 final size:40
Alignment explanation
Indices: 80200267--80200397 Score: 201
Period size: 40 Copynumber: 3.3 Consensus size: 40
80200257 GGACTAAGAT
*
80200267 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAATTCCGGGTTAAGTC
* * *
80200307 CCGAAGGCCTTCGTGCGAGATACTAATTCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAATTCCGGGTTAAGTC
*
80200347 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATT-AATTCCGGGTTAAGTC
80200387 CCGAAGGCATT
1 CCGAAGGCATT
80200398 GTATGAGTTA
Statistics
Matches: 82, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 81 0.99
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAATTCCGGGTTAAGTC
Found at i:80200418 original size:39 final size:39
Alignment explanation
Indices: 80200267--80200434 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 39
80200257 GGACTAAGAT
* * *
80200267 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAA-ACCGGGTTAAGTC
* * *
80200307 CCGAAGGCCTTCGTGCGAGATACTAATTCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAA-ACCGGGTTAAGTC
*
80200347 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACT-AAA-CCGGGTTAAGTC
** * *
80200387 CCGAAGGCATT-GTATGAGTTACTATAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCGGGTTAAGTC
80200426 CCGAAGGCA
1 CCGAAGGCA
80200435 CTTGAACGAG
Statistics
Matches: 111, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
39 28 0.25
40 83 0.75
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCGGGTTAAGTC
Found at i:80208222 original size:40 final size:40
Alignment explanation
Indices: 80208138--80208281 Score: 161
Period size: 40 Copynumber: 3.6 Consensus size: 40
80208128 TTGAATGCTA
* *
80208138 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
** * *
80208177 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
80208218 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
80208258 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
80208282 GTATGAGTTA
Statistics
Matches: 89, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
39 1 0.01
40 76 0.85
41 12 0.13
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:80211790 original size:13 final size:13
Alignment explanation
Indices: 80211772--80211800 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
80211762 TGTTGTTTAT
80211772 TAAACTAATTAAC
1 TAAACTAATTAAC
80211785 TAAACTAATTAAC
1 TAAACTAATTAAC
80211798 TAA
1 TAA
80211801 TTAAGCTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:80221373 original size:40 final size:40
Alignment explanation
Indices: 80221329--80221458 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
80221319 TGGGTCTTAA
* * *
80221329 CCCGGATATGGTCACTAGCATAAATGCCTTCGGGATTTAG
1 CCCGGATATAGTCGCTAGCACAAATGCCTTCGGGATTTAG
*
80221369 CCCGGATATAGTCGCTGGCACAAATGCCTTC-GGATCTTAG
1 CCCGGATATAGTCGCTAGCACAAATGCCTTCGGGAT-TTAG
* * * * *
80221409 TCCGGATGTAGTCGCTTAGTACAAAAGCCTTCGGGACTTAG
1 CCCGGATATAGTCGC-TAGCACAAATGCCTTCGGGATTTAG
*
80221450 CCCAGATAT
1 CCCGGATAT
80221459 CATTCGAGTA
Statistics
Matches: 74, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
39 4 0.05
40 44 0.59
41 23 0.31
42 3 0.04
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (40 bp):
CCCGGATATAGTCGCTAGCACAAATGCCTTCGGGATTTAG
Found at i:80221449 original size:41 final size:40
Alignment explanation
Indices: 80221314--80221458 Score: 139
Period size: 40 Copynumber: 3.6 Consensus size: 40
80221304 CTCGCACAAG
* * * * * * *
80221314 GCCTTTGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAA
* * *
80221354 GCCTTCGGGATTTAGCCCGGATATAGTCGCTGGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAA
* * *
80221394 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGTACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAA
*
80221435 GCCTTCGGGACTTAGCCCAGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
80221459 CATTCGAGTA
Statistics
Matches: 85, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.04
40 55 0.65
41 24 0.28
42 3 0.04
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAA
Found at i:80225901 original size:26 final size:26
Alignment explanation
Indices: 80225871--80225935 Score: 94
Period size: 26 Copynumber: 2.5 Consensus size: 26
80225861 GTAGCTCCGG
*
80225871 AGAGCCATTAATTAGGAAGCTCACAA
1 AGAGCCATTAATCAGGAAGCTCACAA
* *
80225897 AGAGCCTTTAATCAGGAAGCTCACGA
1 AGAGCCATTAATCAGGAAGCTCACAA
80225923 AGAGCCATATAAT
1 AGAGCCAT-TAAT
80225936 GGGATGCTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 30 0.88
27 4 0.12
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (26 bp):
AGAGCCATTAATCAGGAAGCTCACAA
Found at i:80225944 original size:26 final size:25
Alignment explanation
Indices: 80225871--80225945 Score: 87
Period size: 26 Copynumber: 2.9 Consensus size: 25
80225861 GTAGCTCCGG
80225871 AGAGCCATTAATTAGGAAGCTCACAA
1 AGAGCCATTAA-TAGGAAGCTCACAA
* *
80225897 AGAGCCTTTAATCAGGAAGCTCACGA
1 AGAGCCATTAAT-AGGAAGCTCACAA
* *
80225923 AGAGCCATATAATGGGATGCTCA
1 AGAGCCAT-TAATAGGAAGCTCA
80225946 TAAGAACAAC
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
25 1 0.02
26 37 0.88
27 4 0.10
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (25 bp):
AGAGCCATTAATAGGAAGCTCACAA
Found at i:80230364 original size:23 final size:23
Alignment explanation
Indices: 80230337--80230381 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
80230327 TATTTTCAAG
80230337 TCTTACAA-ACTCAAAAACAATGT
1 TCTTA-AAGACTCAAAAACAATGT
*
80230360 TCTTAAATGACTTAAAAACAAT
1 TCTTAAA-GACTCAAAAACAAT
80230382 TCACAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 2 0.11
23 5 0.26
24 12 0.63
ACGTcount: A:0.49, C:0.18, G:0.04, T:0.29
Consensus pattern (23 bp):
TCTTAAAGACTCAAAAACAATGT
Found at i:80232349 original size:43 final size:43
Alignment explanation
Indices: 80232287--80232437 Score: 221
Period size: 43 Copynumber: 3.5 Consensus size: 43
80232277 ACGGTACTAT
80232287 TCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGATGAGTTAATA
1 TCGGG-CTTCGAGCCTAGCAGGCTATAATGCCGATGAGTTAATA
80232331 TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGATGAGTTAATA
1 TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGATGAGTTAATA
* * * * *
80232374 TCGAGCTTCGAACCTAGCAGGCTATAATGACGGTGATTTAATA
1 TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGATGAGTTAATA
** *
80232417 TTAGACTTCGAGCCTAGCAGG
1 TCGGGCTTCGAGCCTAGCAGG
80232438 AGTAATACCG
Statistics
Matches: 97, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
43 92 0.95
44 5 0.05
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (43 bp):
TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGATGAGTTAATA
Found at i:80241185 original size:40 final size:40
Alignment explanation
Indices: 80241123--80241373 Score: 294
Period size: 40 Copynumber: 6.3 Consensus size: 40
80241113 CATTTGAATG
* * * *
80241123 ATATCTGGGCTAAGTCCTGAAGGCAACTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * * *
80241163 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TGATT
* *
80241203 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
80241243 TTATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * *
80241283 TTATCCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TGATT
* * *
80241322 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
80241362 ATATCC-GGCTAA
1 ATATCCGGGCTAA
80241374 ATTCCGAAGA
Statistics
Matches: 183, Mismatches: 23, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
39 42 0.23
40 139 0.76
41 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:80241353 original size:119 final size:120
Alignment explanation
Indices: 80241123--80241369 Score: 379
Period size: 119 Copynumber: 2.1 Consensus size: 120
80241113 CATTTGAATG
* * * *
80241123 ATATCTGGGCTAAGTCCTGAAGGCAACTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGTTAAGACCCGAAGGCAACTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
* *
80241188 TTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
66 TTTGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
80241243 TTATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGA-CCGAAGGCA
1 ATATCCGGGTTAAGACCCGAAGGCAACTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
* * * *
80241307 TTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTT
66 TTTGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
80241362 ATATCCGG
1 ATATCCGG
80241370 CTAAATTCCG
Statistics
Matches: 114, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
119 65 0.57
120 49 0.43
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.28
Consensus pattern (120 bp):
ATATCCGGGTTAAGACCCGAAGGCAACTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:80249206 original size:40 final size:40
Alignment explanation
Indices: 80249147--80249358 Score: 252
Period size: 40 Copynumber: 5.3 Consensus size: 40
80249137 CATTTGAATG
* *
80249147 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * * *
80249187 TTATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* *
80249227 ATA-CCTGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCC-GGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
80249267 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
80249307 ATATCCGGGCTAAGACCCGAAGGCATTTTTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
80249347 ATATCC-GGCTAA
1 ATATCCGGGCTAA
80249359 ATTTCGAAGA
Statistics
Matches: 145, Mismatches: 21, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
39 12 0.08
40 126 0.87
41 7 0.05
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:80249295 original size:80 final size:80
Alignment explanation
Indices: 80249147--80249358 Score: 320
Period size: 80 Copynumber: 2.7 Consensus size: 80
80249137 CATTTGAATG
*
80249147 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
*
80249212 TTTGTACGAGTTGCT
66 TTTGTACGAGTTGAT
*
80249227 ATA-CCTGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGC
1 ATATCC-GGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGC
*
80249291 ATTTGTGCGAGTTGAT
65 ATTTGTACGAGTTGAT
* * * * *
80249307 ATATCCGGGCTAAGACCCGAAGGCATTTTTGCTTGTGGTTATATCC-GGCTAA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAA
80249359 ATTTCGAAGA
Statistics
Matches: 120, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
79 8 0.07
80 110 0.92
81 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
TTTGTACGAGTTGAT
Found at i:80250834 original size:43 final size:43
Alignment explanation
Indices: 80250762--80250926 Score: 226
Period size: 43 Copynumber: 3.8 Consensus size: 43
80250752 ACGGTACTAT
* *
80250762 TCGGGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGAGTTAATA
1 TCGGG-CTTCAAGCCTAGCAGGCTATAATGCCGGTGAGTTAATA
*
80250806 TTGGGCTTCAAGCCTAGCAGGCTATAATGCCGGTGAGTTAATA
1 TCGGGCTTCAAGCCTAGCAGGCTATAATGCCGGTGAGTTAATA
*
80250849 TCGAGCTTCGAA-CCTAGCAGGCTATAATGCCGGTGAGTTAATA
1 TCGGGCTTC-AAGCCTAGCAGGCTATAATGCCGGTGAGTTAATA
* * * *
80250892 TCAGGCTTCGAGGCTAGCAGGC-GTAATGCCGGTGA
1 TCGGGCTTCAAGCCTAGCAGGCTATAATGCCGGTGA
80250927 ATGAGTTTAG
Statistics
Matches: 109, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
42 13 0.12
43 90 0.83
44 6 0.06
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (43 bp):
TCGGGCTTCAAGCCTAGCAGGCTATAATGCCGGTGAGTTAATA
Found at i:80251521 original size:16 final size:18
Alignment explanation
Indices: 80251490--80251522 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
80251480 AACTCGTTAC
80251490 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
80251508 ACTAT-TAT-GTTTTGG
1 ACTATCTATCGTTTTGG
80251523 AATTCGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:80253109 original size:24 final size:24
Alignment explanation
Indices: 80253077--80253147 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 24
80253067 AAGAATTTAG
* *
80253077 TCAAGATCATTCATATATTTTCAA
1 TCAAGATCATTCATGTATATTCAA
80253101 TCAAGATCATTCATGTATATTCAA
1 TCAAGATCATTCATGTATATTCAA
* *
80253125 TTAAAATCATTCATGTATATTCA
1 TCAAGATCATTCATGTATATTCA
80253148 CATAATTCAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.41
Consensus pattern (24 bp):
TCAAGATCATTCATGTATATTCAA
Found at i:80253345 original size:30 final size:31
Alignment explanation
Indices: 80253295--80253358 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 31
80253285 AAGTAGAGGC
*
80253295 ACGATTGTGCAATCAGAGGCACCAAAGTGCAA
1 ACGATTGT-CAATCAAAGGCACCAAAGTGCAA
*
80253327 ACGATTGT-AATCAAAGGCACTAAAGTGCAA
1 ACGATTGTCAATCAAAGGCACCAAAGTGCAA
80253357 AC
1 AC
80253359 CCGTACAAGC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 22 0.73
32 8 0.27
ACGTcount: A:0.41, C:0.20, G:0.22, T:0.17
Consensus pattern (31 bp):
ACGATTGTCAATCAAAGGCACCAAAGTGCAA
Found at i:80254870 original size:25 final size:25
Alignment explanation
Indices: 80254839--80254888 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
80254829 GTATCCAAGC
80254839 ATAAAAAATAAGAGAAAATTTTCAA
1 ATAAAAAATAAGAGAAAATTTTCAA
80254864 ATAAAAAATAAGAGAAAATTTTCAA
1 ATAAAAAATAAGAGAAAATTTTCAA
80254889 TTTCTATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.64, C:0.04, G:0.08, T:0.24
Consensus pattern (25 bp):
ATAAAAAATAAGAGAAAATTTTCAA
Found at i:80257729 original size:8 final size:8
Alignment explanation
Indices: 80257716--80257756 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
80257706 TTATGTAAGT
80257716 TTTATTTG
1 TTTATTTG
80257724 TTTATTT-
1 TTTATTTG
* *
80257731 ATT-TTTC
1 TTTATTTG
80257738 TTTATTTG
1 TTTATTTG
80257746 TTTATTTG
1 TTTATTTG
80257754 TTT
1 TTT
80257757 TTCTAGAACG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
6 3 0.11
7 4 0.14
8 21 0.75
ACGTcount: A:0.12, C:0.02, G:0.07, T:0.78
Consensus pattern (8 bp):
TTTATTTG
Found at i:80257744 original size:22 final size:22
Alignment explanation
Indices: 80257716--80257760 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
80257706 TTATGTAAGT
80257716 TTTATTTGTTTATTTATTTTTC
1 TTTATTTGTTTATTTATTTTTC
*
80257738 TTTATTTGTTTATTTGTTTTTC
1 TTTATTTGTTTATTTATTTTTC
80257760 T
1 T
80257761 AGAACGGTGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.11, C:0.04, G:0.07, T:0.78
Consensus pattern (22 bp):
TTTATTTGTTTATTTATTTTTC
Found at i:80260684 original size:123 final size:125
Alignment explanation
Indices: 80260535--80260844 Score: 428
Period size: 123 Copynumber: 2.5 Consensus size: 125
80260525 AGTCCAACGA
* * * *
80260535 AAAACCGAAACCTAGCATGGTAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTTGC
1 AAAATCGAAACCCAGCATGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTCGC
* *
80260600 TTTAGAATTT-ATAAAACATGAGTGAAATTCTAAAGGAATATTCAATTA-TTT-CAAACCG
66 TTTAGAATTTGA-AAAACACGAGTGAAATTCTAAAGGAATATTCAATTATTTTACAAACAG
* * * *
80260658 GAAATCGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACGTTGAACATTGCCTCGT
1 AAAATCGAAACCCAGCATGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTCGC
80260723 TTTAGAATTTGAAAAACACGAGTGAAATTCTAAAGGAATATTCAATTATTTTGAACAAACAG
66 TTTAGAATTTGAAAAACACGAGTGAAATTCTAAAGGAATATTCAATTATTTT--ACAAACAG
* * ** **
80260785 AAAATCGAAACCCAGCATGATAAGGCACGATTCCCCGAATTTTTAAACATCAAACATTGC
1 AAAATCGAAACCCAGCATGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGC
80260845 ATTCGTTTTA
Statistics
Matches: 163, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
123 102 0.63
124 4 0.02
127 57 0.35
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (125 bp):
AAAATCGAAACCCAGCATGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTCGC
TTTAGAATTTGAAAAACACGAGTGAAATTCTAAAGGAATATTCAATTATTTTACAAACAG
Found at i:80264709 original size:29 final size:30
Alignment explanation
Indices: 80264652--80264719 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
80264642 CACCCTTAAA
* * * *
80264652 ATATTTTCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCCTCAAATTTTC
*
80264682 ATATTTACACT-TTAATCCCTCAAATTTTG
1 ATATTTACACTATTAATCCCTCAAATTTTC
80264711 AGTATTTAC
1 A-TATTTAC
80264720 TCTTGGGCCA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.28, C:0.21, G:0.04, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCCTCAAATTTTC
Found at i:80266207 original size:45 final size:45
Alignment explanation
Indices: 80266141--80266358 Score: 162
Period size: 44 Copynumber: 4.9 Consensus size: 45
80266131 CTTCGATCTA
*
80266141 CTCCACTGCAACTTC-GGGAGATAAGATCTGCTAACTTCAGCCTG
1 CTCCACTACAACTTCAGGGAGATAAGATCTGCTAACTTCAGCCTG
* * * * *
80266185 CTCTACTACAACTTCAGGGAGATAAGA-CTTGGGTAATTTTATCCTG
1 CTCCACTACAACTTCAGGGAGATAAGATC-T-GCTAACTTCAGCCTG
* * * * ** **
80266231 CTCTACTGCAACTTCAGAGAAATAAGGAT-TG-TGGCTTC-GATTTG
1 CTCCACTACAACTTCAGGGAGATAA-GATCTGCTAACTTCAG-CCTG
* * * *
80266275 CTCCACTGCAACTTCAGGGAGACAAGATCTGCTATCTTCAGTCTG
1 CTCCACTACAACTTCAGGGAGATAAGATCTGCTAACTTCAGCCTG
* *
80266320 CTCCACTACAACTTCAGGAAGATGAGA-CTTGCT-ACTTCA
1 CTCCACTACAACTTCAGGGAGATAAGATC-TGCTAACTTCA
80266359 ACCCACTCAA
Statistics
Matches: 136, Mismatches: 28, Indels: 20
0.74 0.15 0.11
Matches are distributed among these distances:
43 3 0.02
44 48 0.35
45 48 0.35
46 35 0.26
47 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (45 bp):
CTCCACTACAACTTCAGGGAGATAAGATCTGCTAACTTCAGCCTG
Found at i:80266237 original size:46 final size:45
Alignment explanation
Indices: 80266048--80266261 Score: 168
Period size: 46 Copynumber: 4.7 Consensus size: 45
80266038 TCTACTACAA
* * * * *
80266048 CTGCTCCACTGCAACTTCAGGGAGATACGGTTCGTGTATTTTTATC
1 CTGCTCTACTGCAACTTCAGGGAGATAAGATT-GGGTAATTTTATC
** * **
80266094 CTGCTCTACTGCAACTTCAGATAGATAAGGATTGTGG--CTTCGAT-
1 CTGCTCTACTGCAACTTCAGGGAGATAA-GATTG-GGTAATTTTATC
* * * * * *
80266138 CTACTCCACTGCAACTTC-GGGAGATAAGATCT-GCTAACTTCAGC
1 CTGCTCTACTGCAACTTCAGGGAGATAAGAT-TGGGTAATTTTATC
*
80266182 CTGCTCTACTACAACTTCAGGGAGATAAGACTTGGGTAATTTTATC
1 CTGCTCTACTGCAACTTCAGGGAGATAAGA-TTGGGTAATTTTATC
* *
80266228 CTGCTCTACTGCAACTTCAGAGAAATAAGGATTG
1 CTGCTCTACTGCAACTTCAGGGAGATAA-GATTG
80266262 TGGCTTCGAT
Statistics
Matches: 129, Mismatches: 29, Indels: 20
0.72 0.16 0.11
Matches are distributed among these distances:
41 1 0.01
42 3 0.02
43 10 0.08
44 31 0.24
45 16 0.12
46 62 0.48
47 6 0.05
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (45 bp):
CTGCTCTACTGCAACTTCAGGGAGATAAGATTGGGTAATTTTATC
Found at i:80266279 original size:134 final size:135
Alignment explanation
Indices: 80266048--80266350 Score: 448
Period size: 134 Copynumber: 2.3 Consensus size: 135
80266038 TCTACTACAA
* * * * *
80266048 CTGCTCCACTGCAACTTCAGGGAGATACG-GTTCGTGTATTTTTATCCTGCTCTACTGCAACTTC
1 CTGCTCCACTACAACTTCAGGGAGATAAGACTT-GGGTAATTTTATCCTGCTCTACTGCAACTTC
* * *
80266112 AGATAGATAAGGATTGTGGCTTCGATCTACTCCACTGCAACTTC-GGGAGATAAGATCTGCTAAC
65 AGAGAAATAAGGATTGTGGCTTCGATCTACTCCACTGCAACTTCAGGGAGACAAGATCTGCTAAC
80266176 TTCAGC
130 TTCAGC
*
80266182 CTGCTCTACTACAACTTCAGGGAGATAAGACTTGGGTAATTTTATCCTGCTCTACTGCAACTTCA
1 CTGCTCCACTACAACTTCAGGGAGATAAGACTTGGGTAATTTTATCCTGCTCTACTGCAACTTCA
* * *
80266247 GAGAAATAAGGATTGTGGCTTCGATTTGCTCCACTGCAACTTCAGGGAGACAAGATCTGCTATCT
66 GAGAAATAAGGATTGTGGCTTCGATCTACTCCACTGCAACTTCAGGGAGACAAGATCTGCTAACT
*
80266312 TCAGT
131 TCAGC
* *
80266317 CTGCTCCACTACAACTTCAGGAAGATGAGACTTG
1 CTGCTCCACTACAACTTCAGGGAGATAAGACTTG
80266351 CTACTTCAAC
Statistics
Matches: 151, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
134 95 0.63
135 56 0.37
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.30
Consensus pattern (135 bp):
CTGCTCCACTACAACTTCAGGGAGATAAGACTTGGGTAATTTTATCCTGCTCTACTGCAACTTCA
GAGAAATAAGGATTGTGGCTTCGATCTACTCCACTGCAACTTCAGGGAGACAAGATCTGCTAACT
TCAGC
Found at i:80266385 original size:135 final size:135
Alignment explanation
Indices: 80266104--80266389 Score: 375
Period size: 135 Copynumber: 2.1 Consensus size: 135
80266094 CTGCTCTACT
* *
80266104 GCAACTTCAGATAG-ATAAGGATTGTGGCTTCGATCTACTCCACTGCAACTTCGGGAGATAAGAT
1 GCAACTTCAGAGAGAATAAGGATTGTGGCTTCGATCTACTCCACTGCAACTTCGGGAGACAAGAT
* * * * * * **
80266168 CTGCTAACTTCAGCCTGCTCTACTACAACTTCAGGGAGATAAGACTTGGGTAATTTTATCCTGCT
66 CTGCTAACTTCAGCCTGCTCCACTACAACTTCAGGAAGATAAGACTTGGCTAACTTCAACCCACT
* *
80266233 CTACT
131 CAACC
* *
80266238 GCAACTTCAGAGA-AATAAGGATTGTGGCTTCGATTTGCTCCACTGCAACTTCAGGGAGACAAGA
1 GCAACTTCAGAGAGAATAAGGATTGTGGCTTCGATCTACTCCACTGCAACTTC-GGGAGACAAGA
* * *
80266302 TCTGCTATCTTCAGTCTGCTCCACTACAACTTCAGGAAGATGAGACTT-GCT-ACTTCAACCCAC
65 TCTGCTAACTTCAGCCTGCTCCACTACAACTTCAGGAAGATAAGACTTGGCTAACTTCAACCCAC
80266365 TCAACC
130 TCAACC
80266371 GCAACTTCAGAGAG-ATAAG
1 GCAACTTCAGAGAGAATAAG
80266390 TTTGCTATGA
Statistics
Matches: 132, Mismatches: 17, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
133 29 0.22
134 50 0.38
135 53 0.40
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (135 bp):
GCAACTTCAGAGAGAATAAGGATTGTGGCTTCGATCTACTCCACTGCAACTTCGGGAGACAAGAT
CTGCTAACTTCAGCCTGCTCCACTACAACTTCAGGAAGATAAGACTTGGCTAACTTCAACCCACT
CAACC
Found at i:80272437 original size:25 final size:22
Alignment explanation
Indices: 80272383--80272437 Score: 56
Period size: 25 Copynumber: 2.3 Consensus size: 22
80272373 TTTCGGCTAG
80272383 AGAAGAAAAGAAGGAGAAAAGA
1 AGAAGAAAAGAAGGAGAAAAGA
* *
80272405 AAATAGAAGAAGAGAGGAGAAGAGA
1 AGA-AGAA-AAGA-AGGAGAAAAGA
80272430 AGGAAGAA
1 A-GAAGAA
80272438 TTCGGCACTC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 2 0.08
23 4 0.15
24 4 0.15
25 15 0.58
26 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.35, T:0.02
Consensus pattern (22 bp):
AGAAGAAAAGAAGGAGAAAAGA
Found at i:80281472 original size:127 final size:124
Alignment explanation
Indices: 80281168--80281491 Score: 420
Period size: 123 Copynumber: 2.6 Consensus size: 124
80281158 AACAAAAAAC
* * * * *
80281168 CGAAACCCAGCATGGTAGGGCACAATTCCTCGAATTTCTAAACATTGAACATTGCCTTGCTTTAG
1 CGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTTGTTTTAG
*
80281233 AATTT-ATAAAACACGAGTGAAATTCTAAAGGGATATTCAATTATTTCAAACCGGAAAT
66 AATTTGATAAAACACGAGTGAAATTCTAAAGGAATATTCAATTATTTCAAACCGGAAAT
* *
80281291 CGAAACCCAGCACGATAGGGCATGATTCCTCGAATTTCCAAACGTTGAACATTGCCTTGTTTTAG
1 CGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTTGTTTTAG
* *
80281356 AATTTGA-AAAACACGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAA-CGAGATAT
66 AATTTGATAAAACACGAGTGAAATTCTAAAGGAATATTCAATTA-TTT---CAAACCG-GAAAT
* * * **
80281418 CGAAACTCAGCACGATAGGGTACGATTCCCCGAATTTCCAAACATCAAACATTGCCTTCGTTTTA
1 CGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTT-GTTTT-
80281483 AGGAATTTG
64 A-GAATTTG
80281492 CAGACGAATA
Statistics
Matches: 175, Mismatches: 17, Indels: 11
0.86 0.08 0.05
Matches are distributed among these distances:
123 97 0.55
124 4 0.02
126 2 0.01
127 59 0.34
128 5 0.03
129 1 0.01
130 7 0.04
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.28
Consensus pattern (124 bp):
CGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTTGTTTTAG
AATTTGATAAAACACGAGTGAAATTCTAAAGGAATATTCAATTATTTCAAACCGGAAAT
Found at i:80284862 original size:18 final size:19
Alignment explanation
Indices: 80284836--80284880 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
80284826 AAGCCTATTG
* *
80284836 TTTTCATAAATTT-TTATA
1 TTTTTATAAATTTCTAATA
80284854 TTTTTAT-AATTTCTAATA
1 TTTTTATAAATTTCTAATA
80284872 TTTTT-TAAA
1 TTTTTATAAA
80284881 ACTTTTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 6 0.26
18 17 0.74
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTTATAAATTTCTAATA
Found at i:80285169 original size:9 final size:9
Alignment explanation
Indices: 80285155--80285290 Score: 67
Period size: 10 Copynumber: 13.9 Consensus size: 9
80285145 TTTATTACAA
80285155 TTTTATAAT
1 TTTTATAAT
80285164 TTTTATAACT
1 TTTTATAA-T
*
80285174 TTTTAATACT
1 TTTT-ATAAT
*
80285184 TTTAATAAGT
1 TTTTATAA-T
80285194 TTTTATAACT
1 TTTTATAA-T
*
80285204 TTTTAAAAT
1 TTTTATAAT
80285213 TAATTTATATAT
1 T--TTTATA-AT
80285225 ATTTATATAAT
1 -TTT-TATAAT
*
80285236 TTCTTAT-AG
1 TT-TTATAAT
**
80285245 TTTTATTTT
1 TTTTATAAT
*
80285254 ATTTTATAAG
1 -TTTTATAAT
*
80285264 TTCTATAAT
1 TTTTATAAT
*
80285273 TTTATATTAT
1 TTT-TATAAT
*
80285283 TTATATAA
1 TTTTATAA
80285291 CAGTTTGATA
Statistics
Matches: 96, Mismatches: 19, Indels: 24
0.69 0.14 0.17
Matches are distributed among these distances:
8 4 0.04
9 29 0.30
10 43 0.45
11 13 0.14
12 6 0.06
13 1 0.01
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.60
Consensus pattern (9 bp):
TTTTATAAT
Found at i:80285237 original size:19 final size:18
Alignment explanation
Indices: 80285213--80285290 Score: 61
Period size: 19 Copynumber: 4.2 Consensus size: 18
80285203 TTTTTAAAAT
80285213 TAATTTATATATATTTATA
1 TAATTT-TATATATTTATA
*
80285232 TAATTTCT-TATAGTTTTATT
1 TAATTT-TATATA--TTTATA
* * *
80285252 TTATTTTATA-AGTTCTA
1 TAATTTTATATATTTATA
80285269 TAATTTTATATTATTTATA
1 TAATTTTATA-TATTTATA
80285288 TAA
1 TAA
80285291 CAGTTTGATA
Statistics
Matches: 45, Mismatches: 9, Indels: 10
0.70 0.14 0.16
Matches are distributed among these distances:
17 12 0.27
18 4 0.09
19 17 0.38
20 12 0.27
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.60
Consensus pattern (18 bp):
TAATTTTATATATTTATA
Found at i:80285289 original size:28 final size:29
Alignment explanation
Indices: 80285216--80285290 Score: 100
Period size: 27 Copynumber: 2.6 Consensus size: 29
80285206 TTAAAATTAA
* *
80285216 TTTATATATATTTATATAATTTCTTATAGT
1 TTTATAT-TATTTATATAAGTTCTTATAAT
*
80285246 TTTATTTTATTT-TATAAGTTC-TATAAT
1 TTTATATTATTTATATAAGTTCTTATAAT
80285273 TTTATATTATTTATATAA
1 TTTATATTATTTATATAA
80285291 CAGTTTGATA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
27 16 0.40
28 13 0.32
29 5 0.12
30 6 0.15
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (29 bp):
TTTATATTATTTATATAAGTTCTTATAAT
Found at i:80285374 original size:28 final size:28
Alignment explanation
Indices: 80285267--80285365 Score: 74
Period size: 27 Copynumber: 3.4 Consensus size: 28
80285257 TTATAAGTTC
* *
80285267 TATAATTTTATATTATTTATATAACAGTTT
1 TATAATTTTTTAATATTTA-ATAACA-TTT
* * * *
80285297 GATATCTTTTTCATAACATATTAATAATATTT
1 TATA-ATTTTT--TAATAT-TTAATAACATTT
80285329 TATAATTTTTTAATATTTAATAACA-TT
1 TATAATTTTTTAATATTTAATAACATTT
*
80285356 TATAGTTTTT
1 TATAATTTTT
80285366 CTATAATTTT
Statistics
Matches: 54, Mismatches: 11, Indels: 11
0.71 0.14 0.14
Matches are distributed among these distances:
27 11 0.20
28 8 0.15
29 5 0.09
30 3 0.06
31 9 0.17
32 6 0.11
33 9 0.17
34 3 0.06
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (28 bp):
TATAATTTTTTAATATTTAATAACATTT
Found at i:80287873 original size:234 final size:234
Alignment explanation
Indices: 80287464--80288173 Score: 1366
Period size: 234 Copynumber: 3.0 Consensus size: 234
80287454 AGCTTTCTTC
80287464 CTTTAAAGGGACTTTCATTTTTTGGAAGCTGAAAGTAAACCAAGTAAAAAAATTGAGAAATTTCA
1 CTTTAAAGGGACTTTCATTTTTTGGAAGCTGAAAGTAAACCAAGTAAAAAAATTGAGAAATTTCA
* *
80287529 ATTGATATATTTTCGGCCAGTTTAGTTGGGAAACTTAATTAGGGTTTGTTTGTTTACATGTAAAA
66 ATTGATATATTTTCGGCCAGTTTAGTTGGGAAACTTAAATAGGGTTCGTTTGTTTACATGTAAAA
*
80287594 GGTTTTAGGAAAATTATTTTCTGCATTTTCTTGTATTTGTTTCACAGAAAACAGTCTCGTCAACA
131 GGTTTTAGGGAAATTATTTTCTGCATTTTCTTGTATTTGTTTCACAGAAAACAGTCTCGTCAACA
80287659 GAAAATAACTTACATGTCAACATAAAATAAGCTATTTTT
196 GAAAATAACTTACATGTCAACATAAAATAAGCTATTTTT
*
80287698 CTTTAAAGAGACTTTCATTTTTTGGAAGCTGAAAGTAAACCAAGTAAAAAAATTGAGAAATTTCA
1 CTTTAAAGGGACTTTCATTTTTTGGAAGCTGAAAGTAAACCAAGTAAAAAAATTGAGAAATTTCA
*
80287763 ATTGATATATTTTCAGCCAGTTTAGTTGGGAAACTTAAATAGGGTTCGTTTGTTTACATGTAAAA
66 ATTGATATATTTTCGGCCAGTTTAGTTGGGAAACTTAAATAGGGTTCGTTTGTTTACATGTAAAA
80287828 GGTTTTAGGGAAATTATTTTCTGCATTTTCTTGTATTTGTTTCACAGAAAACAGTCTCGTCAACA
131 GGTTTTAGGGAAATTATTTTCTGCATTTTCTTGTATTTGTTTCACAGAAAACAGTCTCGTCAACA
80287893 GAAAATAACTTACATGTCAACATAAAATAAGCTATTTTT
196 GAAAATAACTTACATGTCAACATAAAATAAGCTATTTTT
80287932 CTTTAAAGGGACTTTCATTTTTTGGAAGCTGAAAGTAAACCAAGTAAAAAAATTGAGAAATTTCA
1 CTTTAAAGGGACTTTCATTTTTTGGAAGCTGAAAGTAAACCAAGTAAAAAAATTGAGAAATTTCA
80287997 ATTGATATATTTTCGGCCAGTTTAGTTGGGAAACTTAAATAGGGTTCGTTTGTTTACATGTAAAA
66 ATTGATATATTTTCGGCCAGTTTAGTTGGGAAACTTAAATAGGGTTCGTTTGTTTACATGTAAAA
80288062 GGTTTTAGGGAAATTATTTTCTGCATTTTCTTGTATTTGTTTCACAGAAAACAGTCTCGTCAACA
131 GGTTTTAGGGAAATTATTTTCTGCATTTTCTTGTATTTGTTTCACAGAAAACAGTCTCGTCAACA
80288127 GAAAATAACTTACATGTCAACATAAAATAAGCTATTTTT
196 GAAAATAACTTACATGTCAACATAAAATAAGCTATTTTT
80288166 CTTGTAAA
1 CTT-TAAA
80288174 ATGACTTACT
Statistics
Matches: 468, Mismatches: 7, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
234 464 0.99
235 4 0.01
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (234 bp):
CTTTAAAGGGACTTTCATTTTTTGGAAGCTGAAAGTAAACCAAGTAAAAAAATTGAGAAATTTCA
ATTGATATATTTTCGGCCAGTTTAGTTGGGAAACTTAAATAGGGTTCGTTTGTTTACATGTAAAA
GGTTTTAGGGAAATTATTTTCTGCATTTTCTTGTATTTGTTTCACAGAAAACAGTCTCGTCAACA
GAAAATAACTTACATGTCAACATAAAATAAGCTATTTTT
Found at i:80288443 original size:16 final size:16
Alignment explanation
Indices: 80288394--80288436 Score: 68
Period size: 16 Copynumber: 2.6 Consensus size: 16
80288384 TTATTTATAT
*
80288394 TTATTCATATAATAAA
1 TTATTAATATAATAAA
80288410 TTATTAATATAATAAA
1 TTATTAATATAATAAA
80288426 TTATTTAATAT
1 TTA-TTAATAT
80288437 TTAAATTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
16 18 0.72
17 7 0.28
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (16 bp):
TTATTAATATAATAAA
Found at i:80288463 original size:14 final size:14
Alignment explanation
Indices: 80288446--80288485 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
80288436 TTTAAATTTT
80288446 ATTTTAAAAATAAA
1 ATTTTAAAAATAAA
*
80288460 ATTTTAAAAA-ATA
1 ATTTTAAAAATAAA
80288473 ATTTTAAATAATA
1 ATTTTAAA-AATA
80288486 TTTATTACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 10 0.43
14 12 0.52
15 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
ATTTTAAAAATAAA
Found at i:80288475 original size:13 final size:13
Alignment explanation
Indices: 80288446--80288485 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
80288436 TTTAAATTTT
*
80288446 ATTTTAAAAATAAA
1 ATTTTAAAAA-ATA
80288460 ATTTTAAAAAATA
1 ATTTTAAAAAATA
*
80288473 ATTTTAAATAATA
1 ATTTTAAAAAATA
80288486 TTTATTACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 14 0.58
14 10 0.42
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
ATTTTAAAAAATA
Found at i:80291737 original size:16 final size:16
Alignment explanation
Indices: 80291718--80291764 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
80291708 TTCTGATTTT
80291718 TATTTTTATTTTTTGA
1 TATTTTTATTTTTTGA
* *
80291734 TATTTTTAAATTTCTGA
1 TATTTTT-ATTTTTTGA
80291751 -ATTTTGTATTTTTT
1 TATTTT-TATTTTTT
80291765 AAAATTTTCT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 17 0.68
17 8 0.32
ACGTcount: A:0.21, C:0.02, G:0.06, T:0.70
Consensus pattern (16 bp):
TATTTTTATTTTTTGA
Found at i:80292040 original size:20 final size:21
Alignment explanation
Indices: 80291990--80292041 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
80291980 CTTCCTTTTG
80291990 TTTTTAAAATTTTTTGAGATT
1 TTTTTAAAATTTTTTGAGATT
*
80292011 TTTTT-GAATTTTTTG-G-TT
1 TTTTTAAAATTTTTTGAGATT
80292029 ATTTTTAAAATTT
1 -TTTTTAAAATTT
80292042 ATTTCAAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 2 0.07
19 6 0.22
20 14 0.52
21 5 0.19
ACGTcount: A:0.25, C:0.00, G:0.10, T:0.65
Consensus pattern (21 bp):
TTTTTAAAATTTTTTGAGATT
Found at i:80300713 original size:49 final size:49
Alignment explanation
Indices: 80300641--80300738 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
80300631 GGATGATGGG
80300641 CAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAACAAAATAAGAA
1 CAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAACAAAATAAGAA
* *
80300690 CAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAA
1 CAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAACAAAATAAGAA
80300739 GCATGGGCAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.50, C:0.09, G:0.17, T:0.23
Consensus pattern (49 bp):
CAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAACAAAATAAGAA
Found at i:80302249 original size:47 final size:47
Alignment explanation
Indices: 80302195--80302793 Score: 882
Period size: 47 Copynumber: 12.6 Consensus size: 47
80302185 TATTTGAATA
*
80302195 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
80302242 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
80302291 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
80302340 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
80302387 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
80302436 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGCCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
80302483 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
80302532 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
80302579 AATGAGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
80302626 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
80302673 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
80302720 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
80302767 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
80302794 TCCTGAAGGG
Statistics
Matches: 514, Mismatches: 30, Indels: 16
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 328 0.64
49 184 0.36
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:80302303 original size:96 final size:94
Alignment explanation
Indices: 80302195--80302793 Score: 882
Period size: 96 Copynumber: 6.3 Consensus size: 94
80302185 TATTTGAATA
*
80302195 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* *
80302260 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
80302291 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
80302356 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
80302387 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
80302452 TATGTGATAAGGCCGAATGCCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
80302483 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGT
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTAT
*
80302547 ATGTGTGATAAGGCCGAATGGCCAATGTGATG
63 ATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
80302579 AATGAGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATA
*
80302642 TGTGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
80302673 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
80302737 ATGTGATAAGGCCGAATGGCCAATGTGATG
65 ATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
80302767 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
80302794 TCCTGAAGGG
Statistics
Matches: 477, Mismatches: 20, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
93 2 0.00
94 189 0.40
96 238 0.50
97 2 0.00
98 46 0.10
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:80302671 original size:22 final size:22
Alignment explanation
Indices: 80302644--80302765 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
80302634 CATGTGTATG
80302644 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
80302666 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
80302691 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
80302713 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
80302738 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
80302760 TGTGAT
1 TGTGAT
80302766 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:80306734 original size:19 final size:20
Alignment explanation
Indices: 80306707--80306745 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
80306697 GACCAGGTTT
80306707 AAGGATTTTTAGGGT-TTTA
1 AAGGATTTTTAGGGTATTTA
*
80306726 AAGGGTTTTTAGGGTATTTA
1 AAGGATTTTTAGGGTATTTA
80306746 TCTTTTAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.46
Consensus pattern (20 bp):
AAGGATTTTTAGGGTATTTA
Found at i:80308923 original size:128 final size:127
Alignment explanation
Indices: 80308746--80308977 Score: 322
Period size: 128 Copynumber: 1.8 Consensus size: 127
80308736 CATGCACTGA
* * *
80308746 AATTTTAAAAGGATATTCGGTTATTTGGTCAAACGACAAATCGACACCCAGCACATTAGGGTACG
1 AATTTTAAAAGGATATTCGGTCATTTGGTCAAACGACAAATCGAAACCCAGCACATTAGGGCACG
* *
80308811 ATTTCTCGAACTTCCAAACACGAAATATTGCCTTGTTTTCTAATTGAAGAAATCATAGACGG
66 ATTTCTCGAACTTACAAACACGAAATATTGCCTTATTTTCTAATTGAAGAAATCATAGACGG
* * * * *
80308873 AATTTTAAAAAGGGTATTTGGTCATTTGGTTAAACAGA-AAATTGAAACCCAGCACGTTAGGGCA
1 AATTTT-AAAAGGATATTCGGTCATTTGGTCAAAC-GACAAATCGAAACCCAGCACATTAGGGCA
* * *
80308937 TGATTTCTCGAATTTACAAACATGAAATATTGCCTTATTTT
64 CGATTTCTCGAACTTACAAACACGAAATATTGCCTTATTTT
80308978 GAGAACTTTT
Statistics
Matches: 90, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
127 6 0.07
128 82 0.91
129 2 0.02
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.31
Consensus pattern (127 bp):
AATTTTAAAAGGATATTCGGTCATTTGGTCAAACGACAAATCGAAACCCAGCACATTAGGGCACG
ATTTCTCGAACTTACAAACACGAAATATTGCCTTATTTTCTAATTGAAGAAATCATAGACGG
Found at i:80312010 original size:133 final size:133
Alignment explanation
Indices: 80311843--80312159 Score: 433
Period size: 133 Copynumber: 2.4 Consensus size: 133
80311833 TACCGCAGAA
* * * *
80311843 AGATAATA-CTACAATCTTCAACATGTTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAA
1 AGATAAGATCTACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGATGGCTAAA
* * * * *
80311907 CTCTACTCCCCTACTACCTCGGGAAGATAAGATTCGCCCTCTTCGATCTACTTCATTACTGCTTA
66 ATCTACTCCCCTACTACCTCGGGAAGATAAGATTCGCCCTCTTCAATCTACTCCACTAATGCTTA
80311972 GGG
131 GGG
* *
80311975 AGATAAGATCTACAATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAAGCTGATGGCTAAA
1 AGATAAGATCTACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGATGGCTAAA
* *
80312040 ATCTACTCCCCTACTACCTCGGGAAGATACGATTCGCCCTCTTCAATCTGCTCCACTAATGCTTA
66 ATCTACTCCCCTACTACCTCGGGAAGATAAGATTCGCCCTCTTCAATCTACTCCACTAATGCTTA
80312105 GGG
131 GGG
* * ** *
80312108 AGAGAAGATCTACAATCCTCAGTCTGCT-TCCTTACTACCTCAG-GAAGATAAG
1 AGATAAGATCTACAATCTTCAACCTGCTCT-CTTGCTACCTCAGAG-AGATAAG
80312160 ACTACAATCC
Statistics
Matches: 162, Mismatches: 20, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
132 9 0.06
133 153 0.94
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (133 bp):
AGATAAGATCTACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGATGGCTAAA
ATCTACTCCCCTACTACCTCGGGAAGATAAGATTCGCCCTCTTCAATCTACTCCACTAATGCTTA
GGG
Found at i:80312011 original size:177 final size:177
Alignment explanation
Indices: 80311644--80312013 Score: 433
Period size: 177 Copynumber: 2.1 Consensus size: 177
80311634 GATTCGCTGT
* * * * * *
80311644 CTGCTCTCTTGCTACCTCAAGAAAATGAGACTACAATCTCCAGCCTGCTCCCTTGCTACCTTAGG
1 CTGCTCTCTTGCTACCGCAAGAAAATAAGACTACAATCTCCAACATGCTCCCTTGCTACCTCAGA
* * *
80311709 GAGATAAGGCTAGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCGCCATTTTC
66 GAGATAAGGCTAGTGGCTAAAATCTACTCCCCTACTACCTCGGGAAGATAAGATTCGCCATCTTC
* ** * **
80311774 GATCTGTCCCATTGTTATCTCAAGGAGACAAGATCTACATCATCAGT
131 GATCTCTCCCATTACTAGCTCAAGGAGACAAGATCTACATCATCAAC
* * * *
80311821 CTGCT-TCCTTGCTACCGC-AGAAAGATAATACTACAATCTTCAACATGTTCTCTTGCTACCTCA
1 CTGCTCT-CTTGCTACCGCAAGAAA-ATAAGACTACAATCTCCAACATGCTCCCTTGCTACCTCA
* * *
80311884 GAGAGATAAGGCTGGTGGCTAAACTCTACTCCCCTACTACCTCGGGAAGATAAGATTCGCCCTCT
64 GAGAGATAAGGCTAGTGGCTAAAATCTACTCCCCTACTACCTCGGGAAGATAAGATTCGCCATCT
* * * * *
80311949 TCGATCTACT-TCATTACT-GCTTAGGGAGATAAGATCTACAATCTTCAAC
129 TCGATCT-CTCCCATTACTAGCTCAAGGAGACAAGATCTAC-ATCATCAAC
80311998 CTGCTCTCTTGCTACC
1 CTGCTCTCTTGCTACC
80312014 TTAGAGAGAT
Statistics
Matches: 161, Mismatches: 27, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
176 23 0.14
177 136 0.84
178 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (177 bp):
CTGCTCTCTTGCTACCGCAAGAAAATAAGACTACAATCTCCAACATGCTCCCTTGCTACCTCAGA
GAGATAAGGCTAGTGGCTAAAATCTACTCCCCTACTACCTCGGGAAGATAAGATTCGCCATCTTC
GATCTCTCCCATTACTAGCTCAAGGAGACAAGATCTACATCATCAAC
Found at i:80312179 original size:44 final size:45
Alignment explanation
Indices: 80312107--80312203 Score: 110
Period size: 44 Copynumber: 2.2 Consensus size: 45
80312097 AATGCTTAGG
* **
80312107 GAGAGAAGATCTACAATCCTCAGTCTGCT-TCCTTACTACCTCAG-
1 GAGATAAGATCTACAATCCTCAACCTGCTCT-CTTACTACCTCAGA
* *
80312151 GAAGATAAGA-CTACAATCCTTAACCTGCTCTCTTGCTACCTCAGA
1 G-AGATAAGATCTACAATCCTCAACCTGCTCTCTTACTACCTCAGA
80312196 GAGATAAG
1 GAGATAAG
80312204 GCTGGTGGCT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
44 36 0.80
45 9 0.20
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (45 bp):
GAGATAAGATCTACAATCCTCAACCTGCTCTCTTACTACCTCAGA
Found at i:80312236 original size:310 final size:309
Alignment explanation
Indices: 80311674--80312336 Score: 861
Period size: 310 Copynumber: 2.1 Consensus size: 309
80311664 GAAAATGAGA
* * * *
80311674 CTACAATCTCCAGCCTGCTCCCTTGCTACCTTAGGGAGATAAGGCTAGTGGCTAAAATCTGCTCC
1 CTACAATCTTCAGCCTGCTCTCTTGCTACCTTA-GGAGATAAAGCTAGTGGCTAAAATCTACTCC
* * * * *
80311739 CCTGCTACCTCGGGAAGATAAGATTCGCCATTTTCGATCTGTCCCATTGTTATCTCAAGGAGACA
65 CCTACTACCTCGGGAAGATAAGATTCGCCATCTTCAATCTGTCCCA-TCTAATCTCAAGGAGACA
* * *
80311804 AGATCTACATCATCAGTCTGCTTCCTTGCTACCGCAGAAAGATAATACTACAATCTTCAACATGT
129 AGATCTACATCATCAGTCTGCTTCCTTACTACCGCAGAAAGATAAGACTACAATCTTCAACATGC
*
80311869 TCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAACTCTACTCCCCTACTACCTCGGGAAGA
194 TCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTACTCCCCTACTACCTCGGGAAGA
* * * *
80311934 TAAGATTCGCCCTCTTCGATCTACTTCATTACT-GCTTAGGGAGATAAGAT
259 TAAGATTCGCCCTCCTCGATCTACTCCACTACTAGCTCAGGGAGATAAGAT
*
80311984 CTACAATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAAGCT-GATGGCTAAAATCTACTC
1 CTACAATCTTCAGCCTGCTCTCTTGCTACCTTAG-GAGATAAAGCTAG-TGGCTAAAATCTACTC
* * * *
80312048 CCCTACTACCTCGGGAAGATACGATTCGCCCTCTTCAATCTG-CTCCA-CTAATGCTTAGGGAGA
64 CCCTACTACCTCGGGAAGATAAGATTCGCCATCTTCAATCTGTC-CCATCTAAT-CTCAAGGAGA
* * * *
80312111 GAAGATCTACAATCCTCAGTCTGCTTCCTTACTACCTCAGGAAGATAAGACTACAATCCTT-AAC
127 CAAGATCTAC-ATCATCAGTCTGCTTCCTTACTACCGCAGAAAGATAAGACTACAAT-CTTCAAC
* * *
80312175 CTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGGG
190 ATGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTACTCCCCTACTACCTCGGG
* * * *
80312240 AAGATAAGATTCGCCGTCCTCGATCTGCTCCACTACTATCTCAGGGAGATGAGAT
255 AAGATAAGATTCGCCCTCCTCGATCTACTCCACTACTAGCTCAGGGAGATAAGAT
** * *
80312295 CTTTAATCTTCAGTCTACT-TCTTTGCTACCTTAGGAAGATAA
1 CTACAATCTTCAGCCTGCTCTC-TTGCTACCTTAGG-AGATAA
80312337 GACTACAATC
Statistics
Matches: 306, Mismatches: 38, Indels: 17
0.85 0.11 0.05
Matches are distributed among these distances:
308 3 0.01
309 20 0.07
310 234 0.76
311 49 0.16
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.28
Consensus pattern (309 bp):
CTACAATCTTCAGCCTGCTCTCTTGCTACCTTAGGAGATAAAGCTAGTGGCTAAAATCTACTCCC
CTACTACCTCGGGAAGATAAGATTCGCCATCTTCAATCTGTCCCATCTAATCTCAAGGAGACAAG
ATCTACATCATCAGTCTGCTTCCTTACTACCGCAGAAAGATAAGACTACAATCTTCAACATGCTC
TCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTACTCCCCTACTACCTCGGGAAGATA
AGATTCGCCCTCCTCGATCTACTCCACTACTAGCTCAGGGAGATAAGAT
Found at i:80312381 original size:178 final size:178
Alignment explanation
Indices: 80311953--80312474 Score: 703
Period size: 178 Copynumber: 2.9 Consensus size: 178
80311943 CCCTCTTCGA
* * * *
80311953 TCTACTTCATTACT-GCTTAGGGAGATAAGATCTACAATCTTCAACCTGCTCTCTTGCTACCTTA
1 TCTACTTCCTTACTACCTTAGGAAGATAAGA-CTACAATCTTCAACCTGCTCTCTTGCTACCTCA
* * * * * *
80312017 GAGAGATAAAGCTGATGGCTAAAATCTACTCCCCTACTACCTCGGGAAGATACGATTCGCCCTCT
65 GAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCGCCATCT
* *
80312082 TCAATCTGCTCCACTA--ATGCTTAGGGAGA-GAAGATCTACAATCCTCAG
130 TCGATCTGCTCCACTACTAT-CTCAGGGAGATG-AGATCTACAATCCTCAG
* *
80312130 TCTGCTTCCTTACTACCTCAGGAAGATAAGACTACAATCCTT-AACCTGCTCTCTTGCTACCTCA
1 TCTACTTCCTTACTACCTTAGGAAGATAAGACTACAAT-CTTCAACCTGCTCTCTTGCTACCTCA
* *
80312194 GAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCGCCGTCC
65 GAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCGCCATCT
** *
80312259 TCGATCTGCTCCACTACTATCTCAGGGAGATGAGATCTTTAATCTTCAG
130 TCGATCTGCTCCACTACTATCTCAGGGAGATGAGATCTACAATCCTCAG
* * *
80312308 TCTACTTCTTTGCTACCTTAGGAAGATAAGACTACAATCTTCAACCTGCTCTCTTACTACCTCAG
1 TCTACTTCCTTACTACCTTAGGAAGATAAGACTACAATCTTCAACCTGCTCTCTTGCTACCTCAG
* * *
80312373 ATAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGGAAAGATAAGATTCACCATCTT
66 AGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCGCCATCTT
* * * * *
80312438 CGATTTGCTCCACTGCTACCTCATGGAGATAAGATCT
131 CGATCTGCTCCACTACTATCTCAGGGAGATGAGATCT
80312475 GTGAATCCAC
Statistics
Matches: 306, Mismatches: 33, Indels: 11
0.87 0.09 0.03
Matches are distributed among these distances:
177 116 0.38
178 187 0.61
179 3 0.01
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (178 bp):
TCTACTTCCTTACTACCTTAGGAAGATAAGACTACAATCTTCAACCTGCTCTCTTGCTACCTCAG
AGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCGCCATCTT
CGATCTGCTCCACTACTATCTCAGGGAGATGAGATCTACAATCCTCAG
Found at i:80312447 original size:89 final size:88
Alignment explanation
Indices: 80312175--80312447 Score: 237
Period size: 89 Copynumber: 3.1 Consensus size: 88
80312165 AATCCTTAAC
*
80312175 CTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGGG
1 CTGCTCTCTTACTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTC-GG
* * *
80312240 AAGATAAGATTCGCCGTCCTCGAT
65 AAGATAAGATTCACCATCTTCGAT
* * * * * * ** ** * * * **
80312264 CTGCTC-CACTACTATCTCAGGGAGATGAGATCT-TTAATCTTCAGTCTACTTCTTTGCTACCTT
1 CTGCTCTC-TTACTACCTCAGAGAGATAAG-GCTGGT-GGCTAAAATCTGCTCCCCTGCTACC-T
* * * * *
80312327 AGGAAGATAAGACT-ACAATCTTCAAC
62 CGGAAGATAAGATTCACCATCTTCGAT
*
80312353 CTGCTCTCTTACTACCTCAGATAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGGA
1 CTGCTCTCTTACTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGG-
80312418 AAGATAAGATTCACCATCTTCGAT
65 AAGATAAGATTCACCATCTTCGAT
*
80312442 TTGCTC
1 CTGCTC
80312448 CACTGCTACC
Statistics
Matches: 130, Mismatches: 46, Indels: 16
0.68 0.24 0.08
Matches are distributed among these distances:
87 3 0.02
88 29 0.22
89 66 0.51
90 31 0.24
91 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (88 bp):
CTGCTCTCTTACTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGGA
AGATAAGATTCACCATCTTCGAT
Found at i:80314919 original size:5 final size:5
Alignment explanation
Indices: 80314911--80314935 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
80314901 ATGCAATCAT
80314911 AAACA AAACA AAACA AAACA AAACA
1 AAACA AAACA AAACA AAACA AAACA
80314936 CGTCAGTACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.20, G:0.00, T:0.00
Consensus pattern (5 bp):
AAACA
Found at i:80317210 original size:22 final size:24
Alignment explanation
Indices: 80317165--80317213 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
80317155 GTAAGGCCCC
*
80317165 TTCTCTTGCTGCTGTTCAATTTTCG
1 TTCTCTTGCTGCTGGT-AATTTTCG
80317190 TTCTCTTGCTGCTGGT-A-TTTCG
1 TTCTCTTGCTGCTGGTAATTTTCG
80317212 TT
1 TT
80317214 TCCTTTCTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 7 0.30
23 1 0.04
25 15 0.65
ACGTcount: A:0.06, C:0.22, G:0.18, T:0.53
Consensus pattern (24 bp):
TTCTCTTGCTGCTGGTAATTTTCG
Found at i:80321843 original size:26 final size:26
Alignment explanation
Indices: 80321813--80321865 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
80321803 TTACAGTTTT
80321813 TACCCCTAGGAGATAAATT-ACTGAAA
1 TACCCCTAGG-GATAAATTGACTGAAA
* *
80321839 TACCCCTAGGGTTAAATTGACTTAAA
1 TACCCCTAGGGATAAATTGACTGAAA
80321865 T
1 T
80321866 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACTGAAA
Found at i:80323301 original size:20 final size:20
Alignment explanation
Indices: 80323276--80323314 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
80323266 CATTTCATAT
*
80323276 ATATATCCCGTATATTTTTA
1 ATATATCACGTATATTTTTA
*
80323296 ATATATCATGTATATTTTT
1 ATATATCACGTATATTTTT
80323315 TTTGTTTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.10, G:0.05, T:0.54
Consensus pattern (20 bp):
ATATATCACGTATATTTTTA
Found at i:80336965 original size:20 final size:20
Alignment explanation
Indices: 80336940--80336978 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
80336930 CATTTCATAT
*
80336940 ATATATCCCGTATATTTTTA
1 ATATATCACGTATATTTTTA
*
80336960 ATATATCATGTATATTTTT
1 ATATATCACGTATATTTTT
80336979 TTTGTTTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.10, G:0.05, T:0.54
Consensus pattern (20 bp):
ATATATCACGTATATTTTTA
Found at i:80337057 original size:25 final size:26
Alignment explanation
Indices: 80336990--80337057 Score: 68
Period size: 25 Copynumber: 2.6 Consensus size: 26
80336980 TTGTTTCTAT
80336990 TATTATATATATATTTTAATACCATATG
1 TATTAT-TAT-TATTTTAATACCATATG
** *
80337018 TATTATTATCGTTTT-ATACTAT-TG
1 TATTATTATTATTTTAATACCATATG
80337042 CTATTATTATTATTTT
1 -TATTATTATTATTTT
80337058 CGTTATCATT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
24 2 0.06
25 19 0.56
26 4 0.12
27 3 0.09
28 6 0.18
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.57
Consensus pattern (26 bp):
TATTATTATTATTTTAATACCATATG
Found at i:80338280 original size:17 final size:17
Alignment explanation
Indices: 80338258--80338290 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
80338248 AGCAAGCTAT
80338258 GTAATGTATGAGCTGTA
1 GTAATGTATGAGCTGTA
*
80338275 GTAATGTGTGAGCTGT
1 GTAATGTATGAGCTGT
80338291 GAAAATATGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.06, G:0.33, T:0.36
Consensus pattern (17 bp):
GTAATGTATGAGCTGTA
Found at i:80342175 original size:16 final size:18
Alignment explanation
Indices: 80342151--80342203 Score: 61
Period size: 20 Copynumber: 2.8 Consensus size: 18
80342141 TATGTAAAAA
* *
80342151 ATTAAAATATAAAAATTT
1 ATTAATATATATAAATTT
80342169 ATTAATATGTATATAAATTT
1 ATTAATA--TATATAAATTT
*
80342189 ATTAATATATGTAAA
1 ATTAATATATATAAA
80342204 AATAACTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 13 0.43
20 17 0.57
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (18 bp):
ATTAATATATATAAATTT
Found at i:80342198 original size:22 final size:20
Alignment explanation
Indices: 80342158--80342206 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
80342148 AAAATTAAAA
80342158 TATAAAAATTTATTAATATG
1 TATAAAAATTTATTAATATG
* *
80342178 TATATAAATTTATTAATATA
1 TATAAAAATTTATTAATATG
*
80342198 TGTAAAAAT
1 TATAAAAAT
80342207 AACTTTAAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (20 bp):
TATAAAAATTTATTAATATG
Found at i:80342253 original size:32 final size:32
Alignment explanation
Indices: 80342217--80342294 Score: 88
Period size: 33 Copynumber: 2.4 Consensus size: 32
80342207 AACTTTAAAG
*
80342217 GAAAATATTTTCAGGAA-ATC-TGCCAAACAACA
1 GAAAATATTTTCA-CAACATCAT-CCAAACAACA
* *
80342249 GAAAATATTTTACACAACTTCATCCAAACACCA
1 GAAAATATTTT-CACAACATCATCCAAACAACA
80342282 GAAAATATTTTCA
1 GAAAATATTTTCA
80342295 ATAAATTATT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
32 15 0.38
33 24 0.60
34 1 0.03
ACGTcount: A:0.46, C:0.21, G:0.08, T:0.26
Consensus pattern (32 bp):
GAAAATATTTTCACAACATCATCCAAACAACA
Found at i:80342325 original size:20 final size:20
Alignment explanation
Indices: 80342296--80342333 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
80342286 ATATTTTCAA
*
80342296 TAAATTATTTTCCAGAAAAG
1 TAAATCATTTTCCAGAAAAG
80342316 TAAATCATTTTCCAGAAA
1 TAAATCATTTTCCAGAAA
80342334 TCATTTTCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.13, G:0.08, T:0.34
Consensus pattern (20 bp):
TAAATCATTTTCCAGAAAAG
Found at i:80342336 original size:14 final size:13
Alignment explanation
Indices: 80342317--80342346 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
80342307 CCAGAAAAGT
80342317 AAATCATTTTCCAG
1 AAATCATTTTCC-G
80342331 AAATCATTTTCCG
1 AAATCATTTTCCG
80342344 AAA
1 AAA
80342347 AACATTTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (13 bp):
AAATCATTTTCCG
Found at i:80342340 original size:34 final size:32
Alignment explanation
Indices: 80342284--80342347 Score: 83
Period size: 34 Copynumber: 1.9 Consensus size: 32
80342274 AAACACCAGA
* *
80342284 AAATATTTTCAATAAATTATTTTCCAGAAAAGT
1 AAATATTTTCAAGAAATCATTTTCC-GAAAAGT
*
80342317 AAATCATTTTCCAGAAATCATTTTCCGAAAA
1 AAAT-ATTTTCAAGAAATCATTTTCCGAAAA
80342348 ACATTTTACT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 9 0.33
34 18 0.67
ACGTcount: A:0.44, C:0.14, G:0.06, T:0.36
Consensus pattern (32 bp):
AAATATTTTCAAGAAATCATTTTCCGAAAAGT
Found at i:80344998 original size:19 final size:20
Alignment explanation
Indices: 80344971--80345009 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
80344961 GACCAGGTTT
80344971 AAGGATTTTTAGGGT-TTTA
1 AAGGATTTTTAGGGTATTTA
*
80344990 AAGGGTTTTTAGGGTATTTA
1 AAGGATTTTTAGGGTATTTA
80345010 TCTTTTAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.46
Consensus pattern (20 bp):
AAGGATTTTTAGGGTATTTA
Found at i:80348049 original size:3 final size:3
Alignment explanation
Indices: 80348041--80348074 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
80348031 ACTTAATATA
80348041 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
80348075 GAAGGTGGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:80354668 original size:17 final size:16
Alignment explanation
Indices: 80354643--80354677 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
80354633 ACAATATGAT
*
80354643 AAAATATATTTTATAAA
1 AAAAAATATTTTA-AAA
80354660 AAAAAATATTTTAAAA
1 AAAAAATATTTTAAAA
80354676 AA
1 AA
80354678 TAACAATAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
AAAAAATATTTTAAAA
Found at i:80355153 original size:18 final size:19
Alignment explanation
Indices: 80355130--80355171 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 19
80355120 ACTAATAACG
80355130 AAATAAATATTT-ATATGA
1 AAATAAATATTTAATATGA
*
80355148 AAATAAATATTTAATTTGA
1 AAATAAATATTTAATATGA
80355167 AAATA
1 AAATA
80355172 TTTAAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (19 bp):
AAATAAATATTTAATATGA
Found at i:80355516 original size:18 final size:18
Alignment explanation
Indices: 80355495--80355540 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
80355485 AAAAAATATT
80355495 TTTAAATATAATAATAAA
1 TTTAAATATAATAATAAA
*
80355513 TTT-AATATTAATATTAAA
1 TTTAAATA-TAATAATAAA
80355531 --TAAATATAAT
1 TTTAAATATAAT
80355541 TATATTAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
16 5 0.20
17 8 0.32
18 12 0.48
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TTTAAATATAATAATAAA
Found at i:80355532 original size:25 final size:24
Alignment explanation
Indices: 80355504--80355563 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 24
80355494 TTTTAAATAT
80355504 AATAATA-AATTTAATATTAATATTA
1 AATAATATAA-TT-ATATTAATATTA
80355529 AATAAATATAATTATATTAATATTA
1 AAT-AATATAATTATATTAATATTA
*
80355554 AATAACATAA
1 AATAATATAA
80355564 AAATCCCCCA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
24 6 0.19
25 18 0.56
26 6 0.19
27 2 0.06
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (24 bp):
AATAATATAATTATATTAATATTA
Found at i:80355540 original size:31 final size:30
Alignment explanation
Indices: 80355496--80355554 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
80355486 AAAAATATTT
*
80355496 TTAAATATAATAATAA-ATTTAATATTAATA
1 TTAAATAAAATAATAATA-TTAATATTAATA
*
80355526 TTAAATAAATATAATTATATTAATATTAA
1 TTAAATAAA-ATAATAATATTAATATTAA
80355555 ATAACATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 8 0.32
31 16 0.64
32 1 0.04
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (30 bp):
TTAAATAAAATAATAATATTAATATTAATA
Found at i:80357742 original size:29 final size:29
Alignment explanation
Indices: 80357709--80357764 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
80357699 CTATATAACG
* *
80357709 TGAGTGCTTAAATTGTAATTTTTTTATTT
1 TGAGTGCTTAAAATGAAATTTTTTTATTT
80357738 TGAGTGCTTAAAATGAAATTTTTTTAT
1 TGAGTGCTTAAAATGAAATTTTTTTAT
80357765 AGTTGTGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.29, C:0.04, G:0.14, T:0.54
Consensus pattern (29 bp):
TGAGTGCTTAAAATGAAATTTTTTTATTT
Found at i:80358593 original size:20 final size:20
Alignment explanation
Indices: 80358556--80358594 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
80358546 GTCTGATATA
80358556 TTTTGAAAAGTATTTATTAAT
1 TTTTGAAAAG-ATTTATTAAT
80358577 TTTTGAAAA-ATTGTATTA
1 TTTTGAAAAGATT-TATTA
80358595 GCTTTGTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 3 0.18
20 5 0.29
21 9 0.53
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.51
Consensus pattern (20 bp):
TTTTGAAAAGATTTATTAAT
Found at i:80360898 original size:78 final size:77
Alignment explanation
Indices: 80360804--80360953 Score: 219
Period size: 77 Copynumber: 1.9 Consensus size: 77
80360794 AAAAAGTATG
* *
80360804 GTTTTAATTAATAATAAAACAAAATAGTATGAGGAAGTAATTTTAATTAACAATAAAACAAAATA
1 GTTTTAATTAACAATAAAACAAAATAGCATG-GGAAGTAATTTTAATTAACAATAAAACAAAATA
*
80360869 GTATGGGGAAATA
65 GCATGGGGAAATA
* * * * *
80360882 GTTTTAATTAACAATAAAACAAAATAGCATGGGGAGTATTTTTTATTAATAATAAAACAAAGTAG
1 GTTTTAATTAACAATAAAACAAAATAGCATGGGAAGTAATTTTAATTAACAATAAAACAAAATAG
80360947 CATGGGG
66 CATGGGG
80360954 GGAGTGGAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
77 35 0.55
78 29 0.45
ACGTcount: A:0.49, C:0.05, G:0.16, T:0.30
Consensus pattern (77 bp):
GTTTTAATTAACAATAAAACAAAATAGCATGGGAAGTAATTTTAATTAACAATAAAACAAAATAG
CATGGGGAAATA
Found at i:80360939 original size:38 final size:38
Alignment explanation
Indices: 80360805--80360953 Score: 190
Period size: 39 Copynumber: 3.9 Consensus size: 38
80360795 AAAAGTATGG
* * *
80360805 TTTTAATTAATAATAAAACAAAATAGTATGAGGAAGTAA
1 TTTTAATTAACAATAAAACAAAATAGCATG-GGGAGTAA
* * *
80360844 TTTTAATTAACAATAAAACAAAATAGTATGGGGAAATAG
1 TTTTAATTAACAATAAAACAAAATAGCATGGGG-AGTAA
*
80360883 TTTTAATTAACAATAAAACAAAATAGCATGGGGAGTAT
1 TTTTAATTAACAATAAAACAAAATAGCATGGGGAGTAA
* * *
80360921 TTTTTATTAATAATAAAACAAAGTAGCATGGGG
1 TTTTAATTAACAATAAAACAAAATAGCATGGGG
80360954 GGAGTGGAAT
Statistics
Matches: 99, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
38 35 0.35
39 64 0.65
ACGTcount: A:0.49, C:0.05, G:0.15, T:0.30
Consensus pattern (38 bp):
TTTTAATTAACAATAAAACAAAATAGCATGGGGAGTAA
Found at i:80365446 original size:15 final size:15
Alignment explanation
Indices: 80365426--80365456 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
80365416 TTTACTTTCC
80365426 AGAGAGGTAGAAAAG
1 AGAGAGGTAGAAAAG
80365441 AGAGAGGTAGAAAAG
1 AGAGAGGTAGAAAAG
80365456 A
1 A
80365457 AAATCTGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.39, T:0.06
Consensus pattern (15 bp):
AGAGAGGTAGAAAAG
Done.