Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 244 of 333
Found at i:80374774 original size:47 final size:47
Alignment explanation
Indices: 80374720--80375140 Score: 608
Period size: 47 Copynumber: 9.0 Consensus size: 47
80374710 TTAGGATTTT
** * *
80374720 ATGTGATGAATGTGAATGTGTATATATGTGATAAAGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
80374767 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
80374814 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
80374861 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
80374908 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
80374955 ATGTGATGAATGTGAACATGCATATATGTGATGAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
80375002 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
80375049 ATGTGGTGAATATGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
80375096 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGTCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
80375141 TAGTGTGAAA
Statistics
Matches: 335, Mismatches: 39, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 335 1.00
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:80374988 original size:25 final size:25
Alignment explanation
Indices: 80374954--80375033 Score: 71
Period size: 25 Copynumber: 3.3 Consensus size: 25
80374944 CCGAATGGCC
80374954 TATGTGATGAATGTGAACATGCATA
1 TATGTGATGAATGTGAACATGCATA
* * *
80374979 TATGTGATG-AGGCCG-A-ATG-ACCA
1 TATGTGATGAATG-TGAACATGCA-TA
*
80375002 -ATGTGATGAATGTGAGCATGCATA
1 TATGTGATGAATGTGAACATGCATA
80375026 TATGTGAT
1 TATGTGAT
80375034 AAGGCCGAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 10 0.24
23 6 0.15
24 7 0.17
25 18 0.44
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.30
Consensus pattern (25 bp):
TATGTGATGAATGTGAACATGCATA
Found at i:80375057 original size:25 final size:25
Alignment explanation
Indices: 80375029--80375104 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
80375019 ATGCATATAT
80375029 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* **
80375054 GTGAATATGAAC--AT-G-CATATGT-
1 GTG-ATAAGGCCGAATGGCCA-ATGTG
80375076 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
80375101 GTGA
1 GTGA
80375105 ATATGAACAT
Statistics
Matches: 38, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
21 5 0.13
22 5 0.13
23 7 0.18
24 7 0.18
25 9 0.24
26 5 0.13
ACGTcount: A:0.30, C:0.13, G:0.33, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:80375409 original size:37 final size:37
Alignment explanation
Indices: 80375303--80375417 Score: 167
Period size: 37 Copynumber: 3.1 Consensus size: 37
80375293 GGAAATATAT
* * *
80375303 TCCGGGTGAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
80375340 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
80375377 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTCG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
80375414 TCCG
1 TCCG
80375418 AGCTAAAGGT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:80378082 original size:210 final size:210
Alignment explanation
Indices: 80377541--80379062 Score: 2463
Period size: 210 Copynumber: 7.3 Consensus size: 210
80377531 TCATCGGGGT
* * * * *
80377541 AGATCTAAGATGACAGATCTTATCTCTCTGTATTCGGCGGGGAGTATATCGAAGATATAGTTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
80377606 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
* * *
80377671 ACGAATCGAAGTTTGGCATCTT-CACTTTGATGG-AGAGCAGACACATAGCAGATCTGACCTTCA
131 ACAAATCGAAGTCTGGCAT-TTCCACTTTGATGGAAG-GCAGACACATAGCAGATCTTACCTTCA
*
80377734 GATGTTTATGCTGAAGC
194 GATGTTTACGCTGAAGC
* * ** * * * *
80377751 GGATCCAAGATG---G-T-TTGGCATC-CT-TGTGTT-TACAAGGAACAAATCGAAGACATAGCT
1 AGATCCAAGATGACAGATCTT---ATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCT
* * *
80377808 AATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGTCGTCTCCGTATTGTCAG
63 GATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAG
* * *
80377873 AGAACAAATCAAAGTCTGGCATTTCCACTTTGATAGAAGGCAGACACATAGCAAATCTTACCTTC
128 AGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTC
80377938 AGATGTTTACGCTGAAGC
193 AGATGTTTACGCTGAAGC
* * *
80377956 AGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCAGGGAGTAGATCAAAGATATAGCTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
* *
80378021 TTGGCTTTCACGTGTTTACGATAAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGATA
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
*
80378086 ACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATTTTACCTTCAGA
131 ACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAGA
80378151 TGTTTACGCTGAAGC
196 TGTTTACGCTGAAGC
* *
80378166 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGTAGGGAGCAGATCGAAGATATAGCTAAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
*
80378231 TTGGCTTTCACGTGTTTACGATAAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTTGTCAGAG
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTA-TTGTCAGAG
*
80378296 AACAAATGGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAG
130 AACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAG
*
80378361 ATGTTTATGCTGAAGC
195 ATGTTTACGCTGAAGC
80378377 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
* *
80378442 TTGGCTTTCACGTATTTTCGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
80378507 ACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAGA
131 ACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAGA
*
80378572 TGTTTACACTGAAGC
196 TGTTTACGCTGAAGC
* * *
80378587 AGATCCAAGATGACAGATCTTACCTCTCTGTATTCGGTAGGGAGCAGATTGAAGATATAGCTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
80378652 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
80378717 ACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAGA
131 ACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAGA
* *
80378782 TGTTTATGCTGAAGT
196 TGTTTACGCTGAAGC
80378797 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
* * * *
80378862 TTGGCTTTCACTTATTTTCGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAAA
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
80378927 ACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCCTT-AG
131 ACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTA-CCTTCAG
*
80378991 ATGTTTACGCTGAAAC
195 ATGTTTACGCTGAAGC
* *
80379007 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAACAGATCAAAGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGAT
80379063 GTGGCACCCC
Statistics
Matches: 1218, Mismatches: 79, Indels: 30
0.92 0.06 0.02
Matches are distributed among these distances:
204 2 0.00
205 163 0.13
206 8 0.01
207 6 0.00
208 6 0.00
209 5 0.00
210 823 0.68
211 205 0.17
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30
Consensus pattern (210 bp):
AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
ACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAGA
TGTTTACGCTGAAGC
Found at i:80378744 original size:631 final size:630
Alignment explanation
Indices: 80377541--80379062 Score: 2481
Period size: 631 Copynumber: 2.4 Consensus size: 630
80377531 TCATCGGGGT
* * * * *
80377541 AGATCTAAGATGACAGATCTTATCTCTCTGTATTCGGCGGGGAGTATATCGAAGATATAGTTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
80377606 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
* * *
80377671 ACGAATCGAAGTTTGGCATCTT-CACTTTGATGG-AGAGCAGACACATAGCAGATCTGACCTTCA
131 ACAAATCGAAGTCTGGCAT-TTCCACTTTGATGGAAG-GCAGACACATAGCAGATCTTACCTTCA
* * ** *
80377734 GATGTTTATGCTGAAGCGGATCCAAGATG---G-T-TTGGCATC-CT-TGTGTT-TACAAGGAAC
194 GATGTTTATGCTGAAGCAGATCCAAGATGACAGATCTT---ATCTCTCTGTATTCGGCAGGGAAC
* * * *
80377791 AAATCGAAGACATAGCTAATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGT
256 AGATCGAAGATATAGCTAATTTGGCTTTCACGTATTTACGATGAAGCAAATCTAAGATGATTTGT
80377856 CGTCTCCGTATTGTCAGAGAACAAATCAAAGTCTGGCATTTCCACTTTGATAGAAGGCAGACACA
321 CGTCTCCGTATTGTCAGAGAACAAATCAAAGTCTGGCATTTCCACTTTGATAGAAGGCAGACACA
* *
80377921 TAGCAAATCTTACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCTA
386 TAGCAAATCTTACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGACAGATCTTACCTCTCTA
*
80377986 TATTCGGCAGGGAGTAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATAAAGCAAA
451 TATTCGGCAGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATAAAGCAAA
*
80378051 TCTAAGATGATTTGTCGTCTCTGTATTGTCAGATAACAAATCGAAGTCTGGCATTTCCACTTTGA
516 TCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGA
*
80378116 TGGAAGGCAGACACATAGCAGATTTTACCTTCAGATGTTTACGCTGAAGC
581 TGGAAGGCAGACACATAGCAGATCTTACCTTCAGATGTTTACGCTGAAGC
* *
80378166 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGTAGGGAGCAGATCGAAGATATAGCTAAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
*
80378231 TTGGCTTTCACGTGTTTACGATAAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTTGTCAGAG
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTA-TTGTCAGAG
*
80378296 AACAAATGGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAG
130 AACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAG
*
80378361 ATGTTTATGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGAT
195 ATGTTTATGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAACAGAT
* *
80378426 CGAAGATATAGCTGATTTGGCTTTCACGTATTTTCGATGAAGCAAATCTAAGATGATTTGTCGTC
260 CGAAGATATAGCTAATTTGGCTTTCACGTATTTACGATGAAGCAAATCTAAGATGATTTGTCGTC
* * *
80378491 TCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGC
325 TCCGTATTGTCAGAGAACAAATCAAAGTCTGGCATTTCCACTTTGATAGAAGGCAGACACATAGC
* *
80378556 AGATCTTACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGACAGATCTTACCTCTCTGTATT
390 AAATCTTACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGACAGATCTTACCTCTCTATATT
* ** *
80378621 CGGTAGGGAGCAGATTGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTA
455 CGGCAGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATAAAGCAAATCTA
80378686 AGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGA
520 AGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGA
* *
80378751 AGGCAGACACATAGCAGATCTTACCTTCAGATGTTTATGCTGAAGT
585 AGGCAGACACATAGCAGATCTTACCTTCAGATGTTTACGCTGAAGC
80378797 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
* * * *
80378862 TTGGCTTTCACTTATTTTCGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAAA
66 TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
80378927 ACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCCTT-AG
131 ACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTA-CCTTCAG
* *
80378991 ATGTTTACGCTGAAACAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAACAGAT
195 ATGTTTATGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAACAGAT
*
80379056 CAAAGAT
260 CGAAGAT
80379063 GTGGCACCCC
Statistics
Matches: 833, Mismatches: 52, Indels: 19
0.92 0.06 0.02
Matches are distributed among these distances:
625 114 0.14
626 91 0.11
627 2 0.00
628 3 0.00
629 3 0.00
630 141 0.17
631 479 0.58
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30
Consensus pattern (630 bp):
AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGAT
TTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGA
ACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCAGA
TGTTTATGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAACAGATC
GAAGATATAGCTAATTTGGCTTTCACGTATTTACGATGAAGCAAATCTAAGATGATTTGTCGTCT
CCGTATTGTCAGAGAACAAATCAAAGTCTGGCATTTCCACTTTGATAGAAGGCAGACACATAGCA
AATCTTACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGACAGATCTTACCTCTCTATATTC
GGCAGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATAAAGCAAATCTAA
GATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAA
GGCAGACACATAGCAGATCTTACCTTCAGATGTTTACGCTGAAGC
Found at i:80379489 original size:85 final size:85
Alignment explanation
Indices: 80379346--80379524 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
80379336 GGCCGGCCAT
80379346 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
80379411 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
80379431 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
80379496 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
80379516 GGGCATGGG
1 GAGCATGGG
80379525 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:80381620 original size:49 final size:47
Alignment explanation
Indices: 80381541--80382184 Score: 1040
Period size: 47 Copynumber: 13.6 Consensus size: 47
80381531 TATTTGAATA
80381541 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
80381588 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
80381637 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
80381684 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
80381731 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
80381780 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
80381829 AATGTGAAAGTGTACATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
80381876 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
80381925 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCTGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
80381972 AATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
80382019 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
80382066 AATGTGAAAGTGTATATATGTGATCAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
80382113 AATGTGAAAGTG--TATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
80382158 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
80382185 TCCCGAAGGG
Statistics
Matches: 561, Mismatches: 28, Indels: 16
0.93 0.05 0.03
Matches are distributed among these distances:
45 38 0.07
47 338 0.60
49 185 0.33
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:80381649 original size:96 final size:96
Alignment explanation
Indices: 80381541--80382184 Score: 1047
Period size: 96 Copynumber: 6.8 Consensus size: 96
80381531 TATTTGAATA
80381541 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
80381606 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
80381637 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
80381700 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
80381731 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
80381796 TATATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
80381829 AATGTGAAAGTGTACATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
80381894 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
80381925 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCTGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
80381988 TATGTGACAAGGCCTAATGGCCAATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
80382019 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
80382082 TATGTGATCAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
80382113 AATGTGAAAGTG--TATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
80382175 -ATGTGATAAG
66 TATGTGATAAG
80382185 TCCCGAAGGG
Statistics
Matches: 514, Mismatches: 28, Indels: 16
0.92 0.05 0.03
Matches are distributed among these distances:
92 48 0.09
93 1 0.00
94 181 0.35
96 239 0.46
98 45 0.09
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:80383600 original size:45 final size:46
Alignment explanation
Indices: 80383525--80383629 Score: 135
Period size: 45 Copynumber: 2.3 Consensus size: 46
80383515 AGTTTGCAAT
* * * *
80383525 GAGCAGATTGAAGA-AGCAAATTTGGCGTCTCTGTATTAGACG-GG
1 GAGCAGATCGAAGATAACAAATTTGACGTCTCTGTAGTAGACGCGG
*
80383569 GAGCAGATCGAAGATAATAAATTTGACGTCTCTGTAGTAGACGCGG
1 GAGCAGATCGAAGATAACAAATTTGACGTCTCTGTAGTAGACGCGG
*
80383615 G-GCAGATCAAAGATA
1 GAGCAGATCGAAGATA
80383630 GCAGATATCG
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
44 13 0.25
45 37 0.70
46 3 0.06
ACGTcount: A:0.33, C:0.14, G:0.30, T:0.23
Consensus pattern (46 bp):
GAGCAGATCGAAGATAACAAATTTGACGTCTCTGTAGTAGACGCGG
Found at i:80385085 original size:27 final size:27
Alignment explanation
Indices: 80385054--80385159 Score: 135
Period size: 27 Copynumber: 3.9 Consensus size: 27
80385044 GCTGCCAGAG
* *
80385054 CAGATAATGTGACAGAGTCACCAGATA
1 CAGATAATGTGGCAGAGCCACCAGATA
*
80385081 CAGATAGTCGTGGCAGAGCCACCAGA-A
1 CAGATAAT-GTGGCAGAGCCACCAGATA
80385108 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATA-ATGTGGCAGAGCCACCAGATA
*
80385135 CAGATAATTGTGGCATAGCCACCAG
1 CAGATAA-TGTGGCAGAGCCACCAG
80385160 GACGCTTCCT
Statistics
Matches: 70, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
26 1 0.01
27 53 0.76
28 16 0.23
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (27 bp):
CAGATAATGTGGCAGAGCCACCAGATA
Found at i:80385139 original size:54 final size:54
Alignment explanation
Indices: 80385048--80385159 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
80385038 AACATGGCTG
* * *
80385048 CCAGAGCAGATAATGTGACAGAGTCACCAGATACAGATAGTCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
80385102 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
80385156 CCAG
1 CCAG
80385160 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.35, C:0.23, G:0.26, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:80385327 original size:28 final size:26
Alignment explanation
Indices: 80385265--80385327 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
80385255 CAAGTAACCT
** * *
80385265 TAGGGGTATAATGGTAATTTTGCACC
1 TAGGGGTATAACAGTAATTTTCCACA
80385291 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTTCC--ACA
80385319 TAGGGGTAT
1 TAGGGGTAT
80385328 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 20 0.65
28 11 0.35
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.33
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTCCACA
Found at i:80387665 original size:38 final size:38
Alignment explanation
Indices: 80387623--80387698 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
80387613 ATAGAATAAG
*
80387623 CATTTAATGCTTAGTAAGTTCTATAACGAAAAATTAAC
1 CATTTAATGCTTAGTAAGTTATATAACGAAAAATTAAC
*
80387661 CATTTAATGCTTAGTAAGTTATATAACGGAAAATTAAC
1 CATTTAATGCTTAGTAAGTTATATAACGAAAAATTAAC
80387699 TTACCGTTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.34
Consensus pattern (38 bp):
CATTTAATGCTTAGTAAGTTATATAACGAAAAATTAAC
Found at i:80388084 original size:25 final size:25
Alignment explanation
Indices: 80388056--80388114 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
80388046 CATATAAGGG
* *
80388056 GAAGCTCAT-GTGATTCATGTAACGA
1 GAAGCTCATAGAGAGTCAT-TAACGA
*
80388081 GAAGCTC-TAGAGAGTCATTAATGA
1 GAAGCTCATAGAGAGTCATTAACGA
80388105 GAAGCTCATA
1 GAAGCTCATA
80388115 CGAGCCAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 13 0.45
25 16 0.55
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (25 bp):
GAAGCTCATAGAGAGTCATTAACGA
Found at i:80388132 original size:24 final size:24
Alignment explanation
Indices: 80388103--80388158 Score: 87
Period size: 24 Copynumber: 2.3 Consensus size: 24
80388093 AGTCATTAAT
80388103 GAGAAGCTCATA-CGAGCCAATATC
1 GAGAAGCTCA-AGCGAGCCAATATC
*
80388127 GGGAAGCTCAAGCGAGCCAATATC
1 GAGAAGCTCAAGCGAGCCAATATC
80388151 GAGAAGCT
1 GAGAAGCT
80388159 TTGGAGAGCC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 1 0.03
24 28 0.97
ACGTcount: A:0.36, C:0.23, G:0.27, T:0.14
Consensus pattern (24 bp):
GAGAAGCTCAAGCGAGCCAATATC
Found at i:80388169 original size:24 final size:24
Alignment explanation
Indices: 80388078--80388158 Score: 76
Period size: 24 Copynumber: 3.4 Consensus size: 24
80388068 ATTCATGTAA
* * *
80388078 CGAGAAGCTCTAGAGAGTCATTAAT
1 CGAGAAGCTCAAGAGAGCCAAT-AT
*
80388103 -GAGAAGCTCATA-CGAGCCAATAT
1 CGAGAAGCTCA-AGAGAGCCAATAT
* *
80388126 CGGGAAGCTCAAGCGAGCCAATAT
1 CGAGAAGCTCAAGAGAGCCAATAT
80388150 CGAGAAGCT
1 CGAGAAGCT
80388159 TTGGAGAGCC
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
23 3 0.06
24 43 0.91
25 1 0.02
ACGTcount: A:0.36, C:0.21, G:0.26, T:0.17
Consensus pattern (24 bp):
CGAGAAGCTCAAGAGAGCCAATAT
Found at i:80391010 original size:21 final size:20
Alignment explanation
Indices: 80390986--80391024 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
80390976 GTTATAATGA
80390986 CCACACGGGCGTGTTGCCCAT
1 CCACACGGGCGTG-TGCCCAT
80391007 CCACACGGGCGTGTGCCC
1 CCACACGGGCGTGTGCCC
80391025 TTTTTCAAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.13, C:0.41, G:0.31, T:0.15
Consensus pattern (20 bp):
CCACACGGGCGTGTGCCCAT
Found at i:80397350 original size:48 final size:47
Alignment explanation
Indices: 80397291--80397420 Score: 142
Period size: 46 Copynumber: 2.8 Consensus size: 47
80397281 GCTACATTAT
*
80397291 GAGAGCCAGTGTAAGACAGTGTCTGGGACATGGCATCGACATTGAGAC
1 GAGAGCCAGTGTAAGACAGTGTCTGGGACAT-GCATCGACATCGAGAC
* * * * *
80397339 GAGAGCTAGTGTAA-A-ATGTGTCAGGGACATGCATCGGCCTCGAGAT
1 GAGAGCCAGTGTAAGACA-GTGTCTGGGACATGCATCGACATCGAGAC
*
80397385 GTA-AGCCAGTGTAAGACA-TGTCTTGGACATGCATCG
1 G-AGAGCCAGTGTAAGACAGTGTCTGGGACATGCATCG
80397421 GCTACGAGAT
Statistics
Matches: 69, Mismatches: 9, Indels: 10
0.78 0.10 0.11
Matches are distributed among these distances:
46 40 0.58
47 15 0.22
48 14 0.20
ACGTcount: A:0.28, C:0.18, G:0.32, T:0.22
Consensus pattern (47 bp):
GAGAGCCAGTGTAAGACAGTGTCTGGGACATGCATCGACATCGAGAC
Found at i:80397547 original size:96 final size:92
Alignment explanation
Indices: 80397294--80397563 Score: 239
Period size: 94 Copynumber: 2.9 Consensus size: 92
80397284 ACATTATGAG
* * * *
80397294 AGCCAGTGTAAGACAGTGTCTGGGACATGGCATCGACATTGAGACGA-GAGCTAGTGTAA-AATG
1 AGCCACTGTAAGACA-TGTCTTGGACATGGCATCGAC-TT-A-ACGATGAGCTAGTGTAAGACTA
*
80397357 TGTC-AGGGACATGCATCGGCCTCGAGATGTA
62 TGTCTA-GGACATGCATCGGCCTCAAGATGTA
* * * *
80397388 AGCCAGTGTAAGACATGTCTTGGACAT-GCATCGGC-T-ACGA-GATGTGTCAGTGTAAGACCAT
1 AGCCACTGTAAGACATGTCTTGGACATGGCATCGACTTAACGATGA-G-CT-AGTGTAAGACTAT
* ** *
80397449 GTCTAGGACATGACGTCGGCCTCAATTTTTA
63 GTCTAGGACATG-CATCGGCCTCAAGATGTA
*
80397480 TAGTCACTGTAAGACGATGTCTTGGACATGGCATCGACTTAATCGATGAGCTAGTGTAAGACTAT
1 -AGCCACTGTAAGAC-ATGTCTTGGACATGGCATCGACTTAA-CGATGAGCTAGTGTAAGACTAT
*
80397545 GTCTGGGACATGGCATCGG
63 GTCTAGGACAT-GCATCGG
80397564 TATCACACCC
Statistics
Matches: 144, Mismatches: 18, Indels: 26
0.77 0.10 0.14
Matches are distributed among these distances:
87 6 0.04
88 1 0.01
89 1 0.01
90 8 0.06
91 12 0.08
92 21 0.15
93 23 0.16
94 28 0.19
95 7 0.05
96 28 0.19
97 3 0.02
98 4 0.03
99 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (92 bp):
AGCCACTGTAAGACATGTCTTGGACATGGCATCGACTTAACGATGAGCTAGTGTAAGACTATGTC
TAGGACATGCATCGGCCTCAAGATGTA
Found at i:80403103 original size:25 final size:25
Alignment explanation
Indices: 80403074--80403152 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
80403064 TTAATGGCCG
80403074 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
80403099 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
80403121 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
80403146 ATGTGAT
1 ATGTGAT
80403153 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:80403105 original size:47 final size:47
Alignment explanation
Indices: 80403065--80403249 Score: 291
Period size: 47 Copynumber: 3.9 Consensus size: 47
80403055 TGATGGATGT
80403065 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
80403112 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
80403159 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * *
80403206 GAGTGGCCAACGTGAT-AGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGA-ATGTGAAAGTGTATATATGTGATAAG
80403250 TCCAGAAGGG
Statistics
Matches: 128, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
46 1 0.01
47 127 0.99
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:80403424 original size:37 final size:37
Alignment explanation
Indices: 80403370--80403442 Score: 103
Period size: 37 Copynumber: 2.0 Consensus size: 37
80403360 GAGCTCTAAA
* *
80403370 GACCCGATGACTACGTGTGG-GAATTTTGTCCGGGTAT
1 GACCCGATAACTACGTGTGGAG-ATTATGTCCGGGTAT
*
80403407 GACCCGATAACTTCGTGTGGAGATTATGTCCGGGTA
1 GACCCGATAACTACGTGTGGAGATTATGTCCGGGTA
80403443 AGACTTCGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
37 31 0.97
38 1 0.03
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.29
Consensus pattern (37 bp):
GACCCGATAACTACGTGTGGAGATTATGTCCGGGTAT
Found at i:80406753 original size:132 final size:132
Alignment explanation
Indices: 80406516--80406772 Score: 480
Period size: 132 Copynumber: 1.9 Consensus size: 132
80406506 GAGTGGCATG
80406516 TATAAGGACTAGTTTTTATATTAGATGTTGTTATGATTAGCCAAATGTATCGGCTTATATTGATC
1 TATAAGGACTAGTTTTTATATTAGATGTTGTTATGATTAGCCAAATGTATCGGCTTATATTGATC
* *
80406581 TATTGTATATAGCCATGAGATGTAGCTTATTATGGTTATGGCTTGTAAGCCTAATTATTCCTACT
66 TATTGGATATAGCCATGAGATGTAGCTTATTATGGTTATGGCTTGTAAACCTAATTATTCCTACT
80406646 AT
131 AT
80406648 TATAAGGACTAGTTTTTATATTAGATGTTGTTATGATTAGCCAAATGTATCGGCTTATATTGATC
1 TATAAGGACTAGTTTTTATATTAGATGTTGTTATGATTAGCCAAATGTATCGGCTTATATTGATC
80406713 TATTGGATATAGCCATGAGATGT-GCCTTATTATGGTTATGGCTTGTAAACCTAATTATTC
66 TATTGGATATAGCCATGAGATGTAG-CTTATTATGGTTATGGCTTGTAAACCTAATTATTC
80406773 TTGCTATGGG
Statistics
Matches: 122, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
131 1 0.01
132 121 0.99
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.42
Consensus pattern (132 bp):
TATAAGGACTAGTTTTTATATTAGATGTTGTTATGATTAGCCAAATGTATCGGCTTATATTGATC
TATTGGATATAGCCATGAGATGTAGCTTATTATGGTTATGGCTTGTAAACCTAATTATTCCTACT
AT
Found at i:80414314 original size:25 final size:25
Alignment explanation
Indices: 80414276--80414327 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
80414266 TTTGGCTTGA
*
80414276 CATTTACTAAGCAACATCAGATATT
1 CATTTACTAAGCAACATCAAATATT
* * *
80414301 CATTTATTAGGCAATATCAAATATT
1 CATTTACTAAGCAACATCAAATATT
80414326 CA
1 CA
80414328 AATTATTTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (25 bp):
CATTTACTAAGCAACATCAAATATT
Found at i:80421420 original size:16 final size:16
Alignment explanation
Indices: 80421399--80421429 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80421389 GCATTGGAAC
80421399 TTTTATTTTATTTTAT
1 TTTTATTTTATTTTAT
*
80421415 TTTTATTTTTTTTTA
1 TTTTATTTTATTTTA
80421430 CTTAGCTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTATTTTATTTTAT
Found at i:80429437 original size:90 final size:90
Alignment explanation
Indices: 80429278--80429533 Score: 271
Period size: 90 Copynumber: 2.8 Consensus size: 90
80429268 AAGATCAATG
* ** * ** * * *
80429278 TGGGTGGATGATCCACCAGTGTTGCAGGTTAATATGCTGCCAGGTGGTTGTGAATACGCAACGTA
1 TGGGTGGATGAACCAAAAATGTTGCAGGTTAATACACTGCCAGATGGTTGTGAATGCACAACG-A
80429343 -TTTGCAGATAAGAGCTACCAAAAAA
65 GTTTGCAGATAAGAGCTACCAAAAAA
* * *
80429368 TGGGTGGATTAACCAAAAATGTTGCATGTTAATACACTGCTAGATGGTTGTGAATGCACAACGAG
1 TGGGTGGATGAACCAAAAATGTTGCAGGTTAATACACTGCCAGATGGTTGTGAATGCACAACGAG
* * *
80429433 TTTGCATATAAGAGCTGCCAGAAAA
66 TTTGCAGATAAGAGCTACCAAAAAA
** * ** * * * * *
80429458 TTTGTGGATGAACTACTAGTGTTCCAGGTTAATACATTTCCAGATGTTTGTGAATGCACAACGAG
1 TGGGTGGATGAACCAAAAATGTTGCAGGTTAATACACTGCCAGATGGTTGTGAATGCACAACGAG
80429523 TTTGCAGATAA
66 TTTGCAGATAA
80429534 TAGTTGCTAG
Statistics
Matches: 136, Mismatches: 29, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
89 1 0.01
90 135 0.99
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (90 bp):
TGGGTGGATGAACCAAAAATGTTGCAGGTTAATACACTGCCAGATGGTTGTGAATGCACAACGAG
TTTGCAGATAAGAGCTACCAAAAAA
Found at i:80430260 original size:86 final size:86
Alignment explanation
Indices: 80430100--80430261 Score: 211
Period size: 86 Copynumber: 1.9 Consensus size: 86
80430090 CGACCGTGTG
*
80430100 GAGGGTTCTTGGCGGTATGAGATTCAAACTATCTTAGGGTTTCAATGGTACATGGTCGTGTGAAA
1 GAGGGTTCTTGGCGGTATGAGATTCAAACTATCCTAGGGTTTCAATGGTACATGGTCGTGTGAAA
*
80430165 GGCCGTGTGGTTAGCTGTGGA
66 GGCCATGTGGTTAGCTGTGGA
** * * *
80430186 GAGGGTTCTTGGTTGTGTGAGATTCGAGCTATCCTAGGGTTTCAGA-GGTACATGG-CAGTGTGA
1 GAGGGTTCTTGGCGGTATGAGATTCAAACTATCCTAGGGTTTCA-ATGGTACATGGTC-GTGTGA
**
80430249 GGGGCCATGTGGT
64 AAGGCCATGTGGT
80430262 CCACATGCCC
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
85 1 0.02
86 63 0.97
87 1 0.02
ACGTcount: A:0.19, C:0.13, G:0.37, T:0.31
Consensus pattern (86 bp):
GAGGGTTCTTGGCGGTATGAGATTCAAACTATCCTAGGGTTTCAATGGTACATGGTCGTGTGAAA
GGCCATGTGGTTAGCTGTGGA
Found at i:80435957 original size:44 final size:44
Alignment explanation
Indices: 80435888--80435979 Score: 130
Period size: 44 Copynumber: 2.1 Consensus size: 44
80435878 CCGAAGTAAC
* *
80435888 AGTAGCAGTACGACACACATGGTGCCTCATCGACTCAAAGTCGA
1 AGTAACAGTACGACACACATAGTGCCTCATCGACTCAAAGTCGA
** * *
80435932 AGTAACAGTACGACACTTATAGTGCCTCATTGACTCAAGGTCGA
1 AGTAACAGTACGACACACATAGTGCCTCATCGACTCAAAGTCGA
80435976 AGTA
1 AGTA
80435980 TCCCTGAACA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.22
Consensus pattern (44 bp):
AGTAACAGTACGACACACATAGTGCCTCATCGACTCAAAGTCGA
Found at i:80436792 original size:16 final size:17
Alignment explanation
Indices: 80436761--80436793 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
80436751 AATTTCTATC
80436761 CAATTTATACCCTAATT
1 CAATTTATACCCTAATT
*
80436778 CAATTTA-ATCCTAATT
1 CAATTTATACCCTAATT
80436794 AACTAATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.42
Consensus pattern (17 bp):
CAATTTATACCCTAATT
Found at i:80437181 original size:11 final size:11
Alignment explanation
Indices: 80437161--80437195 Score: 52
Period size: 12 Copynumber: 3.0 Consensus size: 11
80437151 AAAACCCTAG
80437161 TTTTTCCTTTTC
1 TTTTT-CTTTTC
80437173 TTTTTCTTTTC
1 TTTTTCTTTTC
80437184 TTCTTTCTTTTC
1 TT-TTTCTTTTC
80437196 CCTCTGTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 8 0.36
12 14 0.64
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTTCTTTTC
Found at i:80437621 original size:21 final size:21
Alignment explanation
Indices: 80437595--80437636 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
80437585 TTTATAATTT
*
80437595 AATATCAATTAAATAATAATA
1 AATATCAATTAAATAAAAATA
* *
80437616 AATATCTATTTAATAAAAATA
1 AATATCAATTAAATAAAAATA
80437637 TATGTATTAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.36
Consensus pattern (21 bp):
AATATCAATTAAATAAAAATA
Found at i:80439414 original size:15 final size:15
Alignment explanation
Indices: 80439394--80439423 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
80439384 AAATGGTTTC
80439394 ATGGGATTTAGCCAA
1 ATGGGATTTAGCCAA
80439409 ATGGGATTTAGCCAA
1 ATGGGATTTAGCCAA
80439424 TTGTCTTGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.27
Consensus pattern (15 bp):
ATGGGATTTAGCCAA
Found at i:80442365 original size:22 final size:22
Alignment explanation
Indices: 80442340--80442403 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
80442330 ATCTACAAAC
*
80442340 ACTGGTGGTTCATCCACAACTT
1 ACTGGTGGTTCATCAACAACTT
** * * *
80442362 ACTGGCAGTTTATCTACAAATT
1 ACTGGTGGTTCATCAACAACTT
80442384 ACTGGTGGTTCATCAACAAC
1 ACTGGTGGTTCATCAACAAC
80442404 CCCAGTGTGT
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.31
Consensus pattern (22 bp):
ACTGGTGGTTCATCAACAACTT
Found at i:80443858 original size:88 final size:88
Alignment explanation
Indices: 80443670--80443847 Score: 320
Period size: 88 Copynumber: 2.0 Consensus size: 88
80443660 ACATGCCATT
* *
80443670 GAACAAAATAAGAGTATCTATATACCAAAACTAGACAAGATGATAGTGTGTTGATTCTACAATCG
1 GAACAAAATAAGAGTATCTATATACCAAAACTAGACAAGATGATAGTGTGTTGATTCTACAACCA
80443735 TCTCCCAATCTTCACGAGTCCAC
66 TCTCCCAATCTTCACGAGTCCAC
* *
80443758 GAACAAAATAAGAGTATCTATATACCAAAGCTAGACAAGATGATAGTGTGTTGATTCTTCAACCA
1 GAACAAAATAAGAGTATCTATATACCAAAACTAGACAAGATGATAGTGTGTTGATTCTACAACCA
80443823 TCTCCCAATCTTCACGAGTCCAC
66 TCTCCCAATCTTCACGAGTCCAC
80443846 GA
1 GA
80443848 GCTCTGTAAG
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
88 86 1.00
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (88 bp):
GAACAAAATAAGAGTATCTATATACCAAAACTAGACAAGATGATAGTGTGTTGATTCTACAACCA
TCTCCCAATCTTCACGAGTCCAC
Found at i:80448123 original size:56 final size:56
Alignment explanation
Indices: 80448049--80448190 Score: 160
Period size: 56 Copynumber: 2.5 Consensus size: 56
80448039 TAAGTAAGTC
* *
80448049 TTTGTGGCTATCTCTATTAAAAGAAGCCTTTATGACGATCTCAGTTATAGGAATCA
1 TTTGTGGCTATCTCTATTAAAAGAAGCCTTTATGACGATCTCAGTTAAAGGAAGCA
* * * * * * *
80448105 TTTGTGGCAATATCTATTAAATA-AAGCCTTTGTGGCTATCTCTGTTAAAGGAAGCC
1 TTTGTGGCTATCTCTATTAAA-AGAAGCCTTTATGACGATCTCAGTTAAAGGAAGCA
* *
80448161 TTTGTGACTATCTCTGTTAAAAGGAAGCCT
1 TTTGTGGCTATCTCTATTAAAA-GAAGCCT
80448191 CTGTGGTGAT
Statistics
Matches: 70, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
55 1 0.01
56 62 0.89
57 7 0.10
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (56 bp):
TTTGTGGCTATCTCTATTAAAAGAAGCCTTTATGACGATCTCAGTTAAAGGAAGCA
Found at i:80448195 original size:29 final size:28
Alignment explanation
Indices: 80448048--80448224 Score: 130
Period size: 28 Copynumber: 6.2 Consensus size: 28
80448038 ATAAGTAAGT
*
80448048 CTTTGTGGCTATCTCTATTAAAA-GAAGC
1 CTTTGT-GCTATCTCTGTTAAAAGGAAGC
* * * * *
80448076 CTTTATGACGATCTCAGTT-ATAGGAATC
1 CTTTGTG-CTATCTCTGTTAAAAGGAAGC
* * * *
80448104 ATTTGTGGCAATATCTATTAAATA--AAGC
1 CTTTGT-GCTATCTCTGTTAAA-AGGAAGC
80448132 CTTTGTGGCTATCTCTGTT-AAAGGAAGC
1 CTTTGT-GCTATCTCTGTTAAAAGGAAGC
80448160 CTTTGTGACTATCTCTGTTAAAAGGAAGC
1 CTTTGTG-CTATCTCTGTTAAAAGGAAGC
* *
80448189 CTCTGTGGTGATCTCTGTTAAAAAGGAAGC
1 CTTTGTGCT-ATCTCTGTT-AAAAGGAAGC
*
80448219 CCTTGT
1 CTTTGT
80448225 TACAATCTTT
Statistics
Matches: 116, Mismatches: 22, Indels: 20
0.73 0.14 0.13
Matches are distributed among these distances:
26 1 0.01
27 6 0.05
28 68 0.59
29 26 0.22
30 15 0.13
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (28 bp):
CTTTGTGCTATCTCTGTTAAAAGGAAGC
Found at i:80454444 original size:26 final size:26
Alignment explanation
Indices: 80454413--80454509 Score: 167
Period size: 26 Copynumber: 3.7 Consensus size: 26
80454403 TGAAATGCCC
80454413 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
80454439 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
80454465 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
80454491 ATCATGGAACATTTACCTA
1 ATCATGGAACATTTACCTA
80454510 TTTTAAGTGC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 67 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:80460079 original size:28 final size:28
Alignment explanation
Indices: 80460016--80460138 Score: 185
Period size: 28 Copynumber: 4.4 Consensus size: 28
80460006 ATATTAAGTC
*
80460016 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
80460043 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
80460071 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
80460099 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
80460128 CGCACACTTAG
1 CGCACACTTAG
80460139 CGCCAATCTC
Statistics
Matches: 89, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 22 0.25
28 51 0.57
29 16 0.18
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:80479291 original size:30 final size:30
Alignment explanation
Indices: 80479257--80479316 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
80479247 TTGAATACAA
80479257 AGCAAAGAATAAAAATTAAAGCGTTTCTTC
1 AGCAAAGAATAAAAATTAAAGCGTTTCTTC
* *
80479287 AGCAAAGAATAACAATTAAAGTGTTTCTTC
1 AGCAAAGAATAAAAATTAAAGCGTTTCTTC
80479317 TTTGGAATCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.28
Consensus pattern (30 bp):
AGCAAAGAATAAAAATTAAAGCGTTTCTTC
Found at i:80480736 original size:18 final size:19
Alignment explanation
Indices: 80480695--80480737 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
80480685 ACAATACAAC
* *
80480695 TATGACATTAATCAATGAT
1 TATGACAATAATCAATAAT
*
80480714 GATGACAAT-ATCAATAAT
1 TATGACAATAATCAATAAT
80480732 TATGAC
1 TATGAC
80480738 GTGATTAATA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.33
Consensus pattern (19 bp):
TATGACAATAATCAATAAT
Found at i:80492145 original size:43 final size:44
Alignment explanation
Indices: 80492055--80492176 Score: 156
Period size: 43 Copynumber: 2.8 Consensus size: 44
80492045 GCAAAAATTT
* * *
80492055 GATGCATTGGAAGAATCTTGAAACAAACTTTGTAATTTAAATGA
1 GATGCATTGGAACAAACTTGGAACAAACTTTGTAATTTAAATGA
* * *
80492099 GATGCATTGTACCAAACTTGGAACAAA-TTTGTAATTTAAATTA
1 GATGCATTGGAACAAACTTGGAACAAACTTTGTAATTTAAATGA
* * *
80492142 GATGCATTGGAATAAACTTTGAACAAACTCTGTAA
1 GATGCATTGGAACAAACTTGGAACAAACTTTGTAA
80492177 AATATATATC
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
43 38 0.58
44 28 0.42
ACGTcount: A:0.40, C:0.11, G:0.16, T:0.32
Consensus pattern (44 bp):
GATGCATTGGAACAAACTTGGAACAAACTTTGTAATTTAAATGA
Found at i:80496912 original size:30 final size:30
Alignment explanation
Indices: 80496876--80497050 Score: 278
Period size: 30 Copynumber: 5.8 Consensus size: 30
80496866 ACTTTTCTCA
*
80496876 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
80496906 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
80496936 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
80496966 ACTAGCCACACCTTGTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* * *
80496996 ACTAGCCACTCTTTTTCCACCACTAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
80497026 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACACCTTTTCCACCACCA
80497051 CTTGTACCTA
Statistics
Matches: 131, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 131 1.00
ACGTcount: A:0.25, C:0.49, G:0.04, T:0.22
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:80496941 original size:60 final size:60
Alignment explanation
Indices: 80496876--80497050 Score: 314
Period size: 60 Copynumber: 2.9 Consensus size: 60
80496866 ACTTTTCTCA
* *
80496876 ACTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCAACTCC
*
80496936 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTGTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCAACTCC
*
80496996 ACTAGCCACTCTTTTTCCACCACTAACTCCACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCA
80497051 CTTGTACCTA
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 111 1.00
ACGTcount: A:0.25, C:0.49, G:0.04, T:0.22
Consensus pattern (60 bp):
ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCAACTCC
Found at i:80497592 original size:23 final size:23
Alignment explanation
Indices: 80497555--80497684 Score: 81
Period size: 23 Copynumber: 5.5 Consensus size: 23
80497545 CTTTTTTTGT
80497555 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
80497578 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
** *
80497600 TATTAGGTATATT-TTAAATTTTA
1 TATTATATATATTCTT-AATATTA
* *
80497623 TATTACGTATATATATTTTATACTATTT
1 TATTA--TATATAT-TCTTA-A-TATTA
80497651 TATT-TATATA-TCTTTAATATTA
1 TATTATATATATTC-TTAATATTA
*
80497673 TATTATTTATAT
1 TATTATATATAT
80497685 ATATATTTTT
Statistics
Matches: 81, Mismatches: 14, Indels: 23
0.69 0.12 0.19
Matches are distributed among these distances:
21 2 0.02
22 23 0.28
23 26 0.32
24 7 0.09
25 11 0.14
26 2 0.02
27 3 0.04
28 7 0.09
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:80497658 original size:25 final size:25
Alignment explanation
Indices: 80497621--80497688 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
80497611 TTTTAAATTT
** *
80497621 TATATTACGTATATATATTTTATAC
1 TATATTATTTATATATATTTAATAC
* * *
80497646 TATTTTATTTATATATCTTTAATAT
1 TATATTATTTATATATATTTAATAC
80497671 TATATTATTTATATATAT
1 TATATTATTTATATATAT
80497689 ATTTTTCTAC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.59
Consensus pattern (25 bp):
TATATTATTTATATATATTTAATAC
Found at i:80497660 original size:27 final size:27
Alignment explanation
Indices: 80497630--80497757 Score: 88
Period size: 25 Copynumber: 4.9 Consensus size: 27
80497620 TTATATTACG
*
80497630 TATATATATTTTATACTATTTTA-TT-
1 TATATATATTTTATACTATATTATTTA
* * *
80497655 TATATATCTTTAATATTATATTATTTA
1 TATATATATTTTATACTATATTATTTA
* *
80497682 TATATATATTTTTCTAC-ATGTTATCTTA
1 TATATATA-TTTTATACTATATTAT-TTA
* * *
80497710 TGTATATATCTTA-ACTATATTATGTA
1 TATATATATTTTATACTATATTATTTA
* * *
80497736 TGTAT-T-TTTAACACTATATTAT
1 TATATATATTTTATACTATATTAT
80497758 GTACATATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
24 3 0.04
25 30 0.37
26 11 0.14
27 22 0.27
28 15 0.19
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (27 bp):
TATATATATTTTATACTATATTATTTA
Found at i:80497755 original size:25 final size:25
Alignment explanation
Indices: 80497707--80497792 Score: 83
Period size: 25 Copynumber: 3.6 Consensus size: 25
80497697 ACATGTTATC
*
80497707 TTATGTATATA-TCTT-A-ACTATA
1 TTATGTATATATTTTTAACACTATA
*
80497729 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATATTTTTAACACTATA
* *
80497754 TTATGTACATATTTTTAATA-T-TA
1 TTATGTATATATTTTTAACACTATA
* *
80497777 TCATGTATTTATTTTT
1 TTATGTATATATTTTT
80497793 TATATATGTA
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
22 10 0.19
23 18 0.34
24 2 0.04
25 23 0.43
ACGTcount: A:0.31, C:0.07, G:0.06, T:0.56
Consensus pattern (25 bp):
TTATGTATATATTTTTAACACTATA
Found at i:80497789 original size:23 final size:24
Alignment explanation
Indices: 80497709--80497799 Score: 73
Period size: 23 Copynumber: 3.9 Consensus size: 24
80497699 ATGTTATCTT
*
80497709 ATGTATATA-TCTTAACTATAT-T-
1 ATGTATATATTTTTAA-TATATATC
* * *
80497731 ATGTATGTATTTTTAACACTATATT
1 ATGTATATATTTTTAATA-TATATC
*
80497756 ATGTACATATTTTTAATAT-TATC
1 ATGTATATATTTTTAATATATATC
* *
80497779 ATGTATTTATTTTTTATATAT
1 ATGTATATATTTTTAATATAT
80497800 GTACATATTG
Statistics
Matches: 54, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
22 9 0.17
23 27 0.50
24 3 0.06
25 15 0.28
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (24 bp):
ATGTATATATTTTTAATATATATC
Found at i:80497945 original size:16 final size:15
Alignment explanation
Indices: 80497921--80497968 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
80497911 TAATTATTAT
*
80497921 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
80497937 TATTTTAATATTTTA
1 TATTTTAATATTTTA
80497952 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
80497968 T
1 T
80497969 TATTCCCATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:80497956 original size:7 final size:8
Alignment explanation
Indices: 80497921--80497972 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
80497911 TAATTATTAT
*
80497921 TATTCTAA
1 TATTTTAA
*
80497929 TATTTTGA
1 TATTTTAA
80497937 TATTTTAA
1 TATTTTAA
80497945 TATTTT-A
1 TATTTTAA
80497952 TATTTTATA
1 TATTTTA-A
*
80497961 TATTTTAT
1 TATTTTAA
80497969 TATT
1 TATT
80497973 CCCATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:80506442 original size:68 final size:70
Alignment explanation
Indices: 80506268--80506442 Score: 219
Period size: 71 Copynumber: 2.5 Consensus size: 70
80506258 CTTTCCAAGG
* ** *
80506268 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
*
80506333 TTTTT
66 GTTTT
* ** *
80506338 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT-ATTTA
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTA
80506402 TGTTTT
65 TGTTTT
** *
80506408 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
80506443 TTTAATTTTT
Statistics
Matches: 91, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
68 31 0.34
70 9 0.10
71 51 0.56
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
GTTTT
Found at i:80506817 original size:77 final size:75
Alignment explanation
Indices: 80506460--80506797 Score: 436
Period size: 77 Copynumber: 4.5 Consensus size: 75
80506450 TTTGTTTTTC
* *
80506460 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
80506525 -TTGTTAAAA
66 GTTTTTAAAA
** *
80506534 AAAAT-AACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
80506598 G-TTTT--CA
66 GTTTTTAAAA
* * ** * *
80506605 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
80506670 GTTTTCAAAAAA
66 GTTTT--TAAAA
* *
80506682 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAATT
80506746 TCTGTTTTTAAAA
63 TCTGTTTTTAAAA
*
80506759 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
80506798 ATTACACACT
Statistics
Matches: 232, Mismatches: 21, Indels: 18
0.86 0.08 0.07
Matches are distributed among these distances:
71 5 0.02
72 56 0.24
73 62 0.27
74 5 0.02
76 1 0.00
77 74 0.32
78 1 0.00
79 28 0.12
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.32
Consensus pattern (75 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTTTTAAAA
Found at i:80507030 original size:72 final size:73
Alignment explanation
Indices: 80506949--80507090 Score: 232
Period size: 72 Copynumber: 2.0 Consensus size: 73
80506939 TCAAAATCAG
* * *
80506949 CTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTG-TGTTTT
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
80507013 AATTTCAA
66 AATTTCAA
* *
80507021 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTTTTTT
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
80507086 AATTT
66 AATTT
80507091 ATGTTTCAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
72 54 0.84
73 10 0.16
ACGTcount: A:0.22, C:0.15, G:0.24, T:0.39
Consensus pattern (73 bp):
CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
AATTTCAA
Found at i:80507268 original size:72 final size:71
Alignment explanation
Indices: 80507082--80507280 Score: 247
Period size: 72 Copynumber: 2.8 Consensus size: 71
80507072 ATTTTCGTTT
** * *
80507082 TTTTAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACGCT
1 TTTTAATTTATG-TTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACGCT
80507147 GAGGTAA
65 GAGGTAA
* * **
80507154 TTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTTAATTTATGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA--ACACGC
**
80507219 TGA-GTGG
64 TGAGGTAA
* * *
80507226 TTTTAATTTATGTTCATCAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCT
1 TTTTAATTTATGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
80507281 TGGCTCAACG
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
71 40 0.37
72 60 0.56
73 8 0.07
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (71 bp):
TTTTAATTTATGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACGCTG
AGGTAA
Found at i:80507318 original size:14 final size:14
Alignment explanation
Indices: 80507299--80507333 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
80507289 CGCTGAGGTA
80507299 TTTTCAATTTCTGG
1 TTTTCAATTTCTGG
*
80507313 TTTTCAATTTCTGT
1 TTTTCAATTTCTGG
80507327 TTTTCAA
1 TTTTCAA
80507334 AAATCGACTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.17, C:0.14, G:0.09, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTGG
Found at i:80507421 original size:233 final size:232
Alignment explanation
Indices: 80506941--80507669 Score: 670
Period size: 232 Copynumber: 3.1 Consensus size: 232
80506931 CTACTTTTTC
* * * * * *
80506941 AAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAG-GTATTTTCAATTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGTG-GTTTT-AATTTA
** * * *
80507005 TGTGT--T-TTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
64 TGT-TCATCAAAAATT-AGCTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
* *
80507067 TTTCAATTTTCGTTTTTTTAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTT
127 TTTCAATTTTCGTGTTTTCAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTT
*
80507132 GAGCCTCAAGACGCTGAGGTAATTTCAATTTTTGTTTGTCA
192 GAGCCTCAAGACGCTGAGGTAATTTCAATTTCTGTTTGTCA
80507173 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGTGGTTTTAATTTATG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGTGGTTTTAATTTATG
* *
80507238 TTCATCAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCT-TGGCTCAACGCTGAGGTATTT
66 TTCATCAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTCAGG-AC-ACGCTGAGGTATTT
* *** * *
80507302 TCAA-TTTC-TGGTTTTCAATTTCTGTTT-TTCAAAAATCGACTCATATTGCGAGAGGTGAGTTG
129 TCAATTTTCGT-GTTTTCAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTG
**
80507364 AGCCTCGGGACATGCTGAGGTAATTTCAATTTCTGTTTGTCA
193 AGCCTCAAGAC--GCTGAGGTAATTTCAATTTCTGTTTGTCA
* * *
80507406 AAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAG-GTCTTTTCAAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGTG-GTTTT-AAT
* * * *
80507469 TTCTGTTTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
61 TTATG--TTC-A-------TC-----AAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTCA
*
80507534 GGACACGCTGAGGTAATTTCAA-TTTC-TG---------T-TG--TCAAAAAAAATCAACTCATA
111 GGACACGCTGAGGTATTTTCAATTTTCGTGTTTTCAATTTATGTTTCAAAAAAAATCAACTCATA
* * *
80507585 TTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGT-ATTTCAATTTCTGTTT-TC-
176 TTGCGAGAAGTGAGTTGAGCCTC-AAGACGCTGAGGTAATTTCAATTTCTGTTTGTCA
80507640 AAAAT-AACTCATATTGCGAGA-GTGAGTTGA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGA
80507670 CTGCTGATCT
Statistics
Matches: 425, Mismatches: 40, Indels: 64
0.80 0.08 0.12
Matches are distributed among these distances:
230 1 0.00
231 50 0.12
232 109 0.26
233 103 0.24
234 6 0.01
235 15 0.04
236 23 0.05
237 9 0.02
238 40 0.09
239 6 0.01
240 1 0.00
246 2 0.00
249 1 0.00
250 22 0.05
251 35 0.08
252 2 0.00
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (232 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGTGGTTTTAATTTATG
TTCATCAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
AATTTTCGTGTTTTCAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
CTCAAGACGCTGAGGTAATTTCAATTTCTGTTTGTCA
Found at i:80507433 original size:73 final size:72
Alignment explanation
Indices: 80507314--80507480 Score: 235
Period size: 73 Copynumber: 2.3 Consensus size: 72
80507304 AATTTCTGGT
* *
80507314 TTTCAATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGC
1 TTTCAATTTCTG-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
80507379 TGAGGTAA
65 TGAGGTAA
* * *
80507387 TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAT
1 TTTCAATTTCTGTTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACAC
**
80507452 GCTGAGGTCT
63 GCTGAGGTAA
80507462 TTTCAATTTCTGTTTTCAA
1 TTTCAATTTCTGTTTTCAA
80507481 TTTCTGTTCG
Statistics
Matches: 86, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
72 3 0.03
73 52 0.60
74 4 0.05
75 27 0.31
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.37
Consensus pattern (72 bp):
TTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCT
GAGGTAA
Found at i:80507479 original size:13 final size:13
Alignment explanation
Indices: 80507461--80507488 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
80507451 TGCTGAGGTC
80507461 TTTTCAATTTCTG
1 TTTTCAATTTCTG
80507474 TTTTCAATTTCTG
1 TTTTCAATTTCTG
80507487 TT
1 TT
80507489 CGTAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.64
Consensus pattern (13 bp):
TTTTCAATTTCTG
Found at i:80507482 original size:161 final size:160
Alignment explanation
Indices: 80507154--80507641 Score: 682
Period size: 161 Copynumber: 3.0 Consensus size: 160
80507144 GCTGAGGTAA
* *
80507154 TTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
** * * ** * * *
80507219 TGA-GTGGTTTTAATTTATGTTCATCAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTTG
66 TGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
80507283 GCTCA-ACGCTGAGGTATTTTCAATTTCTGGT
131 GCTCACACGCTGAGGT-TTTTCAATTTCT-GT
* * * *
80507314 TTTCAATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGC
1 TTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
80507379 TGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
66 TGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
*
80507444 GCTCACATGCTGAGGTCTTTTCAATTTCTGT
131 GCTCACACGCTGAGGT-TTTTCAATTTCTGT
**
80507475 TTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTCAATTTCTGTT--TATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
80507540 GCTGAGGTAATTTCAATTTCTG-TTGTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
64 GCTGAGGTAATTTCAATTTCTGTTTGTC---AAAAATTAACTCATATTGCGAGAGGTGAGTTGAG
*
80507604 CCTCGG---ACACGCTGAGGTATTTCAATTTCTGT
126 CCTCGGCTCACACGCTGAGGTTTTTCAATTTCTGT
80507636 TTTCAA
1 TTTCAA
80507642 AATAACTCAT
Statistics
Matches: 296, Mismatches: 25, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
160 63 0.21
161 92 0.31
162 37 0.12
163 65 0.22
165 39 0.13
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (160 bp):
TTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
TGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
GCTCACACGCTGAGGTTTTTCAATTTCTGT
Found at i:80507555 original size:88 final size:86
Alignment explanation
Indices: 80507387--80507641 Score: 304
Period size: 88 Copynumber: 3.1 Consensus size: 86
80507377 GCTGAGGTAA
* * * *
80507387 TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAT
1 TTTCAATTTCTGTTCGTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--CACAC
**
80507452 GCTGAGGTCTTTTCAATTTCTGT
64 GCTGAGGTAATTTCAATTTCTGT
80507475 TTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACA
1 TTTCAATTTCTGTTCGT--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCACA
80507539 CGCTGAGGTAATTTCAATTTCTGT
63 CGCTGAGGTAATTTCAATTTCTGT
*
80507563 TGTCAA-----------AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-ACACGC
1 TTTCAATTTCTGTTCGTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACGC
80507616 TGAGGT-ATTTCAATTTCTGT
66 TGAGGTAATTTCAATTTCTGT
80507636 TTTCAA
1 TTTCAA
80507642 AATAACTCAT
Statistics
Matches: 156, Mismatches: 8, Indels: 21
0.84 0.04 0.11
Matches are distributed among these distances:
73 19 0.12
74 14 0.09
75 39 0.25
88 45 0.29
90 37 0.24
91 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (86 bp):
TTTCAATTTCTGTTCGTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACGC
TGAGGTAATTTCAATTTCTGT
Found at i:80507642 original size:73 final size:75
Alignment explanation
Indices: 80507475--80507669 Score: 309
Period size: 75 Copynumber: 2.7 Consensus size: 75
80507465 CAATTTCTGT
80507475 TTTCAATTTCTGTTCGT-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTCAATTTCTGTT-GTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
80507539 CGCTGAGGTAA
65 CGCTGAGGTAA
80507550 TTTCAATTTCTGTTGTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACAC
1 TTTCAATTTCTGTTGTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
80507614 GCTGAGGT-A
66 GCTGAGGTAA
*
80507623 TTTCAATTTCTGTTTTC----AAAAT-AACTCATATTGCGAGA-GTGAGTTGA
1 TTTCAATTTCTGTTGTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
80507670 CTGCTGATCT
Statistics
Matches: 118, Mismatches: 1, Indels: 10
0.91 0.01 0.08
Matches are distributed among these distances:
67 9 0.08
68 16 0.14
69 5 0.04
73 17 0.14
74 16 0.14
75 55 0.47
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (75 bp):
TTTCAATTTCTGTTGTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTAA
Found at i:80508483 original size:30 final size:30
Alignment explanation
Indices: 80508447--80508619 Score: 287
Period size: 30 Copynumber: 5.8 Consensus size: 30
80508437 ACTTTTCTCA
*
80508447 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
80508477 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
80508507 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
80508537 ACTAGCCACACC-TTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
80508566 ACTAGCCAC-TCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
80508595 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACACCTTTTCCACCACCA
80508620 CTTGTACCTA
Statistics
Matches: 133, Mismatches: 8, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
28 1 0.01
29 52 0.39
30 80 0.60
ACGTcount: A:0.25, C:0.50, G:0.03, T:0.21
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:80509201 original size:25 final size:25
Alignment explanation
Indices: 80509173--80509311 Score: 97
Period size: 25 Copynumber: 5.5 Consensus size: 25
80509163 ATATTACGTA
*
80509173 TATATATATTTTATACTATTTTATG
1 TATATATATTTTATACTATATTATG
* * * *
80509198 TATATATCTTTAATATTATATTATT
1 TATATATATTTTATACTATATTATG
* * *
80509223 TATATATATATTTTTAC-ATGTTATCT
1 TATATATAT-TTTATACTATATTAT-G
*
80509249 TATGTATATATCTTA-ACTATATTATG
1 TA--TATATATTTTATACTATATTATG
* *
80509275 TATGTAT-TTTTAACACTATATTATG
1 TATATATATTTT-ATACTATATTATG
*
80509300 TACATAT-TTTTA
1 TATATATATTTTA
80509312 ATATTATCAC
Statistics
Matches: 89, Mismatches: 18, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
23 3 0.03
24 6 0.07
25 54 0.61
26 11 0.12
27 8 0.09
28 7 0.08
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.56
Consensus pattern (25 bp):
TATATATATTTTATACTATATTATG
Found at i:80509210 original size:52 final size:52
Alignment explanation
Indices: 80509149--80509262 Score: 135
Period size: 52 Copynumber: 2.2 Consensus size: 52
80509139 ATATATTAGG
*
80509149 TATAT-TTTAA-ATTTATATTACGTATATATATATTTTATAC-TATTTTATGTA
1 TATATCTTTAATA-TTATATTACGTATATATATATTTT-TACTTATCTTATGTA
**
80509200 TATATCTTTAATATTATATTATTTATATATATATTTTTACATGTTATCTTATGTA
1 TATATCTTTAATATTATATTACGTATATATATATTTTTAC---TTATCTTATGTA
80509255 TATATCTT
1 TATATCTT
80509263 AACTATATTA
Statistics
Matches: 54, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
51 8 0.15
52 27 0.50
53 1 0.02
55 18 0.33
ACGTcount: A:0.33, C:0.05, G:0.04, T:0.58
Consensus pattern (52 bp):
TATATCTTTAATATTATATTACGTATATATATATTTTTACTTATCTTATGTA
Found at i:80509223 original size:30 final size:28
Alignment explanation
Indices: 80509161--80509262 Score: 77
Period size: 27 Copynumber: 3.7 Consensus size: 28
80509151 TATTTTAAAT
* * * *
80509161 TTATATTACGTATATATATATT-TTATA
1 TTATTTTATGTATATATCTTTTATTATA
*
80509188 CTATTTTATGTATATATCTTTAATATTATA
1 TTATTTTATGTATATATCTTT--TATTATA
* * *
80509218 TTA-TTTATATATATAT-TTTTA-CATG
1 TTATTTTATGTATATATCTTTTATTATA
*
80509243 TTATCTTATGTATATATCTT
1 TTATTTTATGTATATATCTT
80509263 AACTATATTA
Statistics
Matches: 59, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
25 5 0.08
26 13 0.22
27 18 0.31
28 3 0.05
29 13 0.22
30 7 0.12
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (28 bp):
TTATTTTATGTATATATCTTTTATTATA
Found at i:80509317 original size:20 final size:20
Alignment explanation
Indices: 80509292--80509347 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
80509282 TTTTAACACT
80509292 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
* * *
80509312 ATATTAT-CACGTATTTTTT
1 ATATTATGTACATATTTTTA
*
80509331 TTATATATGTACATATT
1 ATAT-TATGTACATATT
80509348 GATGTAGTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
19 12 0.43
20 10 0.36
21 6 0.21
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.55
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:80509486 original size:7 final size:7
Alignment explanation
Indices: 80509466--80509498 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
80509456 TATTATTCTA
80509466 ATATTTT
1 ATATTTT
80509473 GATATTTT
1 -ATATTTT
80509481 ATATTTT
1 ATATTTT
80509488 ATATTTT
1 ATATTTT
80509495 ATAT
1 ATAT
80509499 ATTTTATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 18 0.72
8 7 0.28
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (7 bp):
ATATTTT
Found at i:80514365 original size:14 final size:15
Alignment explanation
Indices: 80514346--80514375 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
80514336 TGCAAGATAA
80514346 AATTATT-ATTTTTT
1 AATTATTAATTTTTT
80514360 AATTATTAATTTTTT
1 AATTATTAATTTTTT
80514375 A
1 A
80514376 TGAATAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
AATTATTAATTTTTT
Found at i:80514870 original size:15 final size:16
Alignment explanation
Indices: 80514846--80514878 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
80514836 AATGAATCAC
80514846 ATAAAAATAT-TAAAT
1 ATAAAAATATGTAAAT
*
80514861 ATAAATATATGTAAAT
1 ATAAAAATATGTAAAT
80514877 AT
1 AT
80514879 TTTAAGATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
ATAAAAATATGTAAAT
Found at i:80524423 original size:42 final size:42
Alignment explanation
Indices: 80524363--80524447 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
80524353 TTGGTGTTGA
80524363 ATTCAAACTCTTAAAAAAAAAGGCTAAATTGCAACAAAAAGC
1 ATTCAAACTCTTAAAAAAAAAGGCTAAATTGCAACAAAAAGC
* *
80524405 ATTCAAACTCTTACAAAAAAGGGCTAAATTGCAACAAAAAGC
1 ATTCAAACTCTTAAAAAAAAAGGCTAAATTGCAACAAAAAGC
80524447 A
1 A
80524448 AAGAGGAGGG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.53, C:0.18, G:0.11, T:0.19
Consensus pattern (42 bp):
ATTCAAACTCTTAAAAAAAAAGGCTAAATTGCAACAAAAAGC
Found at i:80525319 original size:13 final size:14
Alignment explanation
Indices: 80525303--80525331 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
80525293 TGTTTACCCA
80525303 TTTATTTTATT-TC
1 TTTATTTTATTATC
80525316 TTTATTTTATTATC
1 TTTATTTTATTATC
80525330 TT
1 TT
80525332 AATCAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTATTTTATTATC
Found at i:80543568 original size:75 final size:75
Alignment explanation
Indices: 80543445--80543787 Score: 417
Period size: 72 Copynumber: 4.5 Consensus size: 75
80543435 TTTTGTTTTC
*
80543445 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
80543510 ATTGTT-AAAA
66 GTT-TTAAAAA
**
80543520 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
80543585 GTTTT---CA
66 GTTTTAAAAA
* * * ** * * *
80543592 AAATTTAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
80543657 GTTTTCAAAAAAAA
66 GTTTT----AAAAA
* * *
80543671 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
80543735 TCTGTTTTTAAAAA
63 TCTG-TTTTAAAAA
*
80543749 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
80543788 ATTACACACT
Statistics
Matches: 235, Mismatches: 21, Indels: 20
0.85 0.08 0.07
Matches are distributed among these distances:
72 65 0.28
74 2 0.01
75 64 0.27
78 41 0.17
79 35 0.15
81 24 0.10
82 4 0.02
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (75 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTAAAAA
Found at i:80544022 original size:72 final size:73
Alignment explanation
Indices: 80543941--80544082 Score: 232
Period size: 72 Copynumber: 2.0 Consensus size: 73
80543931 TCAAAATTAG
* * *
80543941 CTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTG-TGTTTT
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
80544005 AATTTCAA
66 AATTTCAA
* *
80544013 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTTTTTT
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
80544078 AATTT
66 AATTT
80544083 ATGTTTCAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
72 54 0.84
73 10 0.16
ACGTcount: A:0.22, C:0.15, G:0.24, T:0.39
Consensus pattern (73 bp):
CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
AATTTCAA
Found at i:80544195 original size:71 final size:72
Alignment explanation
Indices: 80544078--80544272 Score: 232
Period size: 71 Copynumber: 2.7 Consensus size: 72
80544068 TCGTTTTTTT
** * * *
80544078 AATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA-AGACGCTGAG
1 AATTTATG-TTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACACTGAG
80544142 GTAATTTC
65 GTAATTTC
* **
80544150 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAG
1 AATTTATGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACACTGAG
** *
80544215 GTGGTTTT
65 GTAATTTC
* * *
80544223 AATTTATGTTCATC-AAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCT
1 AATTTATGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
80544273 TGGCTCACAC
Statistics
Matches: 104, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
71 40 0.38
72 40 0.38
73 24 0.23
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.32
Consensus pattern (72 bp):
AATTTATGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACACTGAGG
TAATTTC
Found at i:80544260 original size:72 final size:70
Alignment explanation
Indices: 80544074--80544272 Score: 227
Period size: 72 Copynumber: 2.8 Consensus size: 70
80544064 ATTTTCGTTT
** * * *
80544074 TTTTAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACGCT
1 TTTTAATTTATG-TTC-ATCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACACT
80544139 GAGGTAA
64 GAGGTAA
* * **
80544146 TTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACAC
1 TTTTAATTTATGTTCATC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA--ACACAC
**
80544211 TGAGGTGG
63 TGAGGTAA
* * *
80544219 TTTTAATTTATGTTCATCAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCT
1 TTTTAATTTATGTTCATCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
80544273 TGGCTCACAC
Statistics
Matches: 106, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
71 39 0.37
72 43 0.41
73 24 0.23
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (70 bp):
TTTTAATTTATGTTCATCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACACTGA
GGTAA
Found at i:80544311 original size:14 final size:14
Alignment explanation
Indices: 80544292--80544326 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
80544282 CGCTGAGGTA
80544292 TTTTCAATTTCTGG
1 TTTTCAATTTCTGG
*
80544306 TTTTCAATTTCTGT
1 TTTTCAATTTCTGG
80544320 TTTTCAA
1 TTTTCAA
80544327 AAATCGACTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.17, C:0.14, G:0.09, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTGG
Found at i:80544347 original size:232 final size:233
Alignment explanation
Indices: 80543941--80544677 Score: 672
Period size: 232 Copynumber: 3.1 Consensus size: 233
80543931 TCAAAATTAG
* * * * * **
80543941 CTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTATTTTCAATTTATGTGTTCAA
* *
80544006 ATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCG
66 AATTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCG
* * *
80544071 TTTTTTTAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-AAGA
131 TGTTTTCAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAACA
*
80544135 CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAA
196 CGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAA
*
80544173 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTGGTTTT-AATTTATGT-TCAT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGT-ATTTTCAATTTATGTGT--T
* *
80544236 CAAAATT-AGCTCATATTGCAAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGGTATTTTCAA
63 CAAAATTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAA
* *** * *
80544299 -TTTC-TGGTTTTCAATTTCTGTTT-TTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCC
125 TTTTCGT-GTTTTCAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCC
* *
80544361 TCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAA
189 TC-GAACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAA
* *
80544407 CTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTCTTTTCAATTTCTGTTCT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACA--CTGAGGTATTTTCAA-------T-T
* * *
80544471 TCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACAC
55 T--A--TGTGTTC-------AAAATTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACAC
* * *
80544536 GCTGAGGTAATATCAA-TTTC-TG---------T-TG-TTAAAAAAAAATCAACTCATATTGCGA
109 GCTGAGGTATTTTCAATTTTCGTGTTTTCAATTTATGTTTCAAAAAAAATCAACTCATATTGCGA
* * * * *
80544588 GAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAA
174 GAAGTGAGTTGAGCCTC-GAACACGCTGAGGTA-ATTTCAATTTCTGTTTGTCAAAAATCAA
* * *
80544650 CTCATATTGAGAGATGTGAATTGAGCCT
1 CTCATATTGCGAGAGGTGAGTTGAGCCT
80544678 TGGGTTCACA
Statistics
Matches: 423, Mismatches: 45, Indels: 63
0.80 0.08 0.12
Matches are distributed among these distances:
231 3 0.01
232 113 0.27
233 29 0.07
234 91 0.22
235 4 0.01
236 9 0.02
241 2 0.00
242 54 0.13
243 51 0.12
244 2 0.00
246 1 0.00
247 2 0.00
248 2 0.00
249 1 0.00
252 1 0.00
253 23 0.05
254 5 0.01
255 28 0.07
256 2 0.00
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (233 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTATTTTCAATTTATGTGTTCAA
AATTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCG
TGTTTTCAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAACA
CGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAA
Found at i:80544426 original size:73 final size:74
Alignment explanation
Indices: 80544307--80544468 Score: 245
Period size: 73 Copynumber: 2.2 Consensus size: 74
80544297 AATTTCTGGT
* * *
80544307 TTTCAATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-GACACG
1 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCCACACG
80544371 CTGAGGTAA
66 CTGAGGTAA
* *
80544380 TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAT
1 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC-CACAC
**
80544445 GCTGAGGTCT
65 GCTGAGGTAA
80544455 TTTCAATTTCTGTT
1 TTTCAATTTCTGTT
80544469 CTTCAATTTC
Statistics
Matches: 80, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
73 55 0.69
75 25 0.31
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (74 bp):
TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCCACACG
CTGAGGTAA
Found at i:80544460 original size:162 final size:162
Alignment explanation
Indices: 80544146--80544642 Score: 628
Period size: 161 Copynumber: 3.0 Consensus size: 162
80544136 GCTGAGGTAA
* * *
80544146 TTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACAC
1 TTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
** * * ** * * *
80544211 TGAGGTGGTTTTAATTTATGTTCATC-AAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTTG
66 TGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
80544275 GCTCACACGCTGAGGTATTTTCAATTTCTGGT
131 GCTCACACGCTGAGGTATTTTCAATTTCTGGT
* * *
80544307 TTTCAATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
1 TTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
80544372 TGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
66 TGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
* *
80544437 GCTCACATGCTGAGGTCTTTTCAATTTCT-GT
131 GCTCACACGCTGAGGTATTTTCAATTTCTGGT
** *
80544468 TCTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGA
1 T-TTCAATTTCTGTT--T--ATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
* * *
80544533 CACGCTGAGGTAATATCAATTTCTG-TTGTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGT
61 CACGCTGAGGTAATTTCAATTTCTGTTTG-T---CAAAAATTAACTCATATTGCGAGAGGTGAGT
* *
80544597 TGAGCCTCAGG---ACACGCTGAGGTATTTTTAAATTTCTGTT
122 TGAGCCTC-GGCTCACACGCTGAGGTA-TTTTCAATTTCTGGT
80544637 TTTCAA
1 TTTCAA
80544643 AAATCAACTC
Statistics
Matches: 294, Mismatches: 29, Indels: 19
0.86 0.08 0.06
Matches are distributed among these distances:
161 83 0.28
162 75 0.26
164 1 0.00
165 3 0.01
166 64 0.22
167 11 0.04
168 16 0.05
169 39 0.13
170 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (162 bp):
TTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
TGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
GCTCACACGCTGAGGTATTTTCAATTTCTGGT
Found at i:80544475 original size:14 final size:14
Alignment explanation
Indices: 80544456--80544483 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
80544446 CTGAGGTCTT
80544456 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
80544470 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
80544484 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:80544598 original size:76 final size:77
Alignment explanation
Indices: 80544471--80544677 Score: 287
Period size: 76 Copynumber: 2.7 Consensus size: 77
80544461 TTTCTGTTCT
* *
80544471 TCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACAC
1 TCAATTTCTGTT-GTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
80544536 GCTGAGGTA-ATA
65 GCTGAGGTATATA
80544548 TCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
* *
80544613 CTGAGGTATTTT
66 CTGAGGTATATA
* ** * * *
80544625 TAAATTTCTGTT-TT--TCAAAAATCAACTCATATTGAGAGATGTGAATTGAGCCT
1 TCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
80544678 TGGGTTCACA
Statistics
Matches: 119, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
74 34 0.29
76 61 0.51
77 24 0.20
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.31
Consensus pattern (77 bp):
TCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
CTGAGGTATATA
Found at i:80545425 original size:30 final size:30
Alignment explanation
Indices: 80545389--80545564 Score: 262
Period size: 30 Copynumber: 5.8 Consensus size: 30
80545379 ACTTTTCTCA
*
80545389 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
80545419 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
80545449 ACTAGCCACTCTTTTTTCCACCACCAACTCC
1 ACTAGCCACAC-CTTTTCCACCACCAACTCC
* *
80545480 ACTAGTCACACCTTGTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* * *
80545510 ACTAGCCACTCTTTTTCCACCACTAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
80545540 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACACCTTTTCCACCACCA
80545565 CTTGTACCTA
Statistics
Matches: 129, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
30 102 0.79
31 27 0.21
ACGTcount: A:0.25, C:0.48, G:0.04, T:0.23
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:80545472 original size:61 final size:60
Alignment explanation
Indices: 80545389--80545564 Score: 298
Period size: 61 Copynumber: 2.9 Consensus size: 60
80545379 ACTTTTCTCA
* *
80545389 ACTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCAACTCC
* *
80545449 ACTAGCCACTCTTTTTTCCACCACCAACTCCACTAGTCACACCTTGTCCACCACCAACTCC
1 ACTAGCCACTC-TTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCAACTCC
*
80545510 ACTAGCCACTCTTTTTCCACCACTAACTCCACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCA
80545565 CTTGTACCTA
Statistics
Matches: 109, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
60 52 0.48
61 57 0.52
ACGTcount: A:0.25, C:0.48, G:0.04, T:0.23
Consensus pattern (60 bp):
ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCAACTCC
Found at i:80546180 original size:51 final size:53
Alignment explanation
Indices: 80546099--80546211 Score: 124
Period size: 53 Copynumber: 2.2 Consensus size: 53
80546089 AATATTATAT
*
80546099 TATATATATTCTTTTAATATATTAGGTATAT-T-TTAAATTTTATATTACGTA
1 TATATATATTCTTTTAATATATTAGGTATATATCTTAAATATTATATTACGTA
* * ** * **
80546150 TATATATATT-TTTATACTATTTTATTTATATATCTTTAATATTATATTATTTA
1 TATATATATTCTTT-TAATATATTAGGTATATATCTTAAATATTATATTACGTA
80546203 TATATATAT
1 TATATATAT
80546212 ATATATTTTT
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
50 3 0.06
51 23 0.45
52 1 0.02
53 24 0.47
ACGTcount: A:0.35, C:0.04, G:0.03, T:0.58
Consensus pattern (53 bp):
TATATATATTCTTTTAATATATTAGGTATATATCTTAAATATTATATTACGTA
Found at i:80546194 original size:16 final size:17
Alignment explanation
Indices: 80546135--80546219 Score: 65
Period size: 16 Copynumber: 5.2 Consensus size: 17
80546125 TATATTTTAA
**
80546135 ATTT-TATATTACGTAT
1 ATTTATATATTATATAT
* *
80546151 ATATATAT-TTTTATACT
1 ATTTATATATTATATA-T
80546168 ATTT-TAT-TTATATAT
1 ATTTATATATTATATAT
*
80546183 CTTTA-ATATTATAT-T
1 ATTTATATATTATATAT
80546198 ATTTATATATATATATAT
1 ATTTATATAT-TATATAT
80546216 ATTT
1 ATTT
80546220 TTCTACATGT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
15 11 0.20
16 26 0.48
17 12 0.22
18 5 0.09
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (17 bp):
ATTTATATATTATATAT
Found at i:80546205 original size:25 final size:24
Alignment explanation
Indices: 80546152--80546207 Score: 76
Period size: 25 Copynumber: 2.3 Consensus size: 24
80546142 ATTACGTATA
* *
80546152 TATATATTTTTATACTATTTTATT
1 TATATATTTTAATACTATATTATT
*
80546176 TATATATCTTTAATATTATATTATT
1 TATATAT-TTTAATACTATATTATT
80546201 TATATAT
1 TATATAT
80546208 ATATATATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 7 0.25
25 21 0.75
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (24 bp):
TATATATTTTAATACTATATTATT
Found at i:80546282 original size:25 final size:25
Alignment explanation
Indices: 80546234--80546319 Score: 83
Period size: 25 Copynumber: 3.6 Consensus size: 25
80546224 ACATGTTATC
*
80546234 TTATGTATATA-TCTT-A-ACTATA
1 TTATGTATATATTTTTAACACTATA
*
80546256 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATATTTTTAACACTATA
* *
80546281 TTATGTACATATTTTTAATA-T-TA
1 TTATGTATATATTTTTAACACTATA
* *
80546304 TCATGTATTTATTTTT
1 TTATGTATATATTTTT
80546320 TATATATGTA
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
22 10 0.19
23 18 0.34
24 2 0.04
25 23 0.43
ACGTcount: A:0.31, C:0.07, G:0.06, T:0.56
Consensus pattern (25 bp):
TTATGTATATATTTTTAACACTATA
Found at i:80546316 original size:23 final size:24
Alignment explanation
Indices: 80546236--80546326 Score: 73
Period size: 23 Copynumber: 3.9 Consensus size: 24
80546226 ATGTTATCTT
*
80546236 ATGTATATA-TCTTAACTATAT-T-
1 ATGTATATATTTTTAA-TATATATC
* * *
80546258 ATGTATGTATTTTTAACACTATATT
1 ATGTATATATTTTTAATA-TATATC
*
80546283 ATGTACATATTTTTAATAT-TATC
1 ATGTATATATTTTTAATATATATC
* *
80546306 ATGTATTTATTTTTTATATAT
1 ATGTATATATTTTTAATATAT
80546327 GTACATATTG
Statistics
Matches: 54, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
22 9 0.17
23 27 0.50
24 3 0.06
25 15 0.28
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (24 bp):
ATGTATATATTTTTAATATATATC
Found at i:80546474 original size:16 final size:15
Alignment explanation
Indices: 80546450--80546497 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
80546440 TAATTATTAT
*
80546450 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
80546466 TATTTTAATATTTTA
1 TATTTTAATATTTTA
80546481 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
80546497 T
1 T
80546498 TATTCCCATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:80546485 original size:7 final size:8
Alignment explanation
Indices: 80546450--80546501 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
80546440 TAATTATTAT
*
80546450 TATTCTAA
1 TATTTTAA
*
80546458 TATTTTGA
1 TATTTTAA
80546466 TATTTTAA
1 TATTTTAA
80546474 TATTTT-A
1 TATTTTAA
80546481 TATTTTATA
1 TATTTTA-A
*
80546490 TATTTTAT
1 TATTTTAA
80546498 TATT
1 TATT
80546502 CCCATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:80549218 original size:20 final size:20
Alignment explanation
Indices: 80549193--80549232 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
80549183 AGCAACAATA
80549193 TTTAATGTGGGAGTGGTTTG
1 TTTAATGTGGGAGTGGTTTG
80549213 TTTAATGTGGGAGTGGTTTG
1 TTTAATGTGGGAGTGGTTTG
80549233 GTTGATGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.40, T:0.45
Consensus pattern (20 bp):
TTTAATGTGGGAGTGGTTTG
Found at i:80549240 original size:20 final size:20
Alignment explanation
Indices: 80549194--80549240 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
80549184 GCAACAATAT
*
80549194 TTAATGTGGGAGTGGTTTGT
1 TTAATGTGGGAGTGGTTTGG
80549214 TTAATGTGGGAGTGGTTTGG
1 TTAATGTGGGAGTGGTTTGG
*
80549234 TTGATGT
1 TTAATGT
80549241 TTAGGCTAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.15, C:0.00, G:0.40, T:0.45
Consensus pattern (20 bp):
TTAATGTGGGAGTGGTTTGG
Found at i:80549675 original size:23 final size:22
Alignment explanation
Indices: 80549632--80549675 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
80549622 ATAAAAAATT
**
80549632 AATATTTTAATAAATGGATAAA
1 AATATTTTAATAAATAAATAAA
*
80549654 AATATTTTATGTAAATAAATAA
1 AATATTTTA-ATAAATAAATAA
80549676 GTTTGATCAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.39
Consensus pattern (22 bp):
AATATTTTAATAAATAAATAAA
Found at i:80553947 original size:6 final size:6
Alignment explanation
Indices: 80553901--80553933 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
80553891 CAGCAGAAAG
80553901 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAA
80553934 TATTAAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:80556054 original size:25 final size:25
Alignment explanation
Indices: 80556006--80556057 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
80555996 GTTCTTCGTT
**
80556006 TTTTTTTCTTTGTCGATTTCTTTTC
1 TTTTTTTCTTTGTCGAAATCTTTTC
80556031 TTTTTTTCTTT-TCGAAATCGTTTTC
1 TTTTTTTCTTTGTCGAAATC-TTTTC
80556056 TT
1 TT
80556058 AAGAAAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.08, C:0.15, G:0.08, T:0.69
Consensus pattern (25 bp):
TTTTTTTCTTTGTCGAAATCTTTTC
Found at i:80569606 original size:46 final size:44
Alignment explanation
Indices: 80569524--80569851 Score: 220
Period size: 46 Copynumber: 7.6 Consensus size: 44
80569514 ATAATACAGG
** *
80569524 TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAA--TCAGA
* *
80569570 TCTTATCTCCCGGAGATTACAGCGGAGCAGATCAAAG-AT-AGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATCAG--A
* * * * *
80569614 TCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG-----GA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATCAGA
* * * * *
80569653 TCTTATCTCTCTGA-AGTTACAGTAGAGAAGATC--A-CATCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGAATCAGA
* *
80569694 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAA--TCAGA
* ** * *
80569740 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA-GAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-AATCAGA
* * *
80569784 TCTTATCT-CCTGAGATTACAGCGGAGCAGATCGAAG-A-CACTA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATCA-GA
*
80569826 TCCTATCTCCCTGA-AGTTACAGTGGA
1 TCTTATCTCCCTGAGA-TTACAGTGGA
80569852 ATGGATTAAA
Statistics
Matches: 222, Mismatches: 42, Indels: 39
0.73 0.14 0.13
Matches are distributed among these distances:
37 1 0.00
38 1 0.00
39 24 0.11
41 30 0.14
42 12 0.05
43 41 0.18
44 43 0.19
45 1 0.00
46 68 0.31
47 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (44 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATCAGA
Found at i:80569810 original size:43 final size:44
Alignment explanation
Indices: 80569567--80569819 Score: 145
Period size: 44 Copynumber: 5.9 Consensus size: 44
80569557 AAAGAATTTC
* * **
80569567 AGATCTTATCTCCCGGAGATTACAGCGGAGCAGATCAAAGATAG
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGCCAG
* * ** * *
80569611 TA-ATCCTATCTCCTTGAGATTACAATGGAGCGGAT-TAA---AG
1 -AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGCCAG
* ** * *
80569651 -GATCTTATCTCTCTGA-AGTTACAGTAGAGAAGATC-ACA-TCAG
1 AGATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATCGA-AGCCAG
* * * * * *
80569693 -G-TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAG-AATTTC
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGCCA---G
* * *
80569737 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGCCAG
80569781 AGATCTTATCT-CCTGAGATTACAGCGGAGCAGATCGAAG
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAG
80569820 ACACTATCCT
Statistics
Matches: 162, Mismatches: 31, Indels: 32
0.72 0.14 0.14
Matches are distributed among these distances:
38 1 0.01
39 25 0.15
40 3 0.02
41 28 0.17
42 5 0.03
43 27 0.17
44 38 0.23
45 2 0.01
46 32 0.20
47 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.26
Consensus pattern (44 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGCCAG
Found at i:80569839 original size:43 final size:44
Alignment explanation
Indices: 80569567--80569847 Score: 133
Period size: 43 Copynumber: 6.6 Consensus size: 44
80569557 AAAGAATTTC
* * * *
80569567 AGATCTTATCTCCCGGAGATTACAGCGGAGCAGATCAAAGATAG
1 AGATCCTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACAG
* ** * *
80569611 TA-ATCCTATCTCCTTGAGATTACAATGGAGCGGAT--TA-A-AG
1 -AGATCCTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACAG
* * ** * *
80569651 -GATCTTATCTCTCTGA-AGTTACAGTAGAGAAGATC-ACA-TCAG
1 AGATCCTATCTCCCTGAGA-TTACAGCGGAGCAGATCGA-AGACAG
* * * * * *
80569693 -G-TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGA-ATTTC
1 AGATCCTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA---G
* * * * *
80569737 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG
1 AGATCCTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACAG
*
80569781 AGATCTTATCT-CCTGAGATTACAGCGGAGCAGATCGAAGACA-
1 AGATCCTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACAG
**
80569823 CTATCCTATCTCCCTGA-AGTTACAG
1 AGATCCTATCTCCCTGAGA-TTACAG
80569848 TGGAATGGAT
Statistics
Matches: 183, Mismatches: 37, Indels: 34
0.72 0.15 0.13
Matches are distributed among these distances:
38 1 0.01
39 24 0.13
40 2 0.01
41 30 0.16
42 15 0.08
43 38 0.21
44 38 0.21
45 2 0.01
46 32 0.17
47 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (44 bp):
AGATCCTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACAG
Found at i:80571043 original size:25 final size:25
Alignment explanation
Indices: 80570995--80571046 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
80570985 GTTCTTCGTT
**
80570995 TTTTTTTCTTTGTCGATTTCTTTTC
1 TTTTTTTCTTTGTCGAAATCTTTTC
80571020 TTTTTTTCTTT-TCGAAATCGTTTTC
1 TTTTTTTCTTTGTCGAAATC-TTTTC
80571045 TT
1 TT
80571047 AAGAAAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.08, C:0.15, G:0.08, T:0.69
Consensus pattern (25 bp):
TTTTTTTCTTTGTCGAAATCTTTTC
Found at i:80579183 original size:18 final size:18
Alignment explanation
Indices: 80579162--80579201 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
80579152 TGGGCTTCCC
80579162 ATTTATATTTT-TTTTTCT
1 ATTT-TATTTTATTTTTCT
*
80579180 ATTTTCTTTTATTTTTCT
1 ATTTTATTTTATTTTTCT
80579198 ATTT
1 ATTT
80579202 CAACTGTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (18 bp):
ATTTTATTTTATTTTTCT
Found at i:80580002 original size:20 final size:19
Alignment explanation
Indices: 80579968--80580006 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
80579958 TAACATTATT
80579968 ATTAAATACAATTTAATAA
1 ATTAAATACAATTTAATAA
*
80579987 ATTAATATATAATTTAATAA
1 ATTAA-ATACAATTTAATAA
80580007 TATTCTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTAAATACAATTTAATAA
Found at i:80580069 original size:23 final size:21
Alignment explanation
Indices: 80580038--80580080 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
80580028 TAAAATATGA
80580038 ATTAAAAAATCATAATATATAAT
1 ATTAAAAAA--ATAATATATAAT
*
80580061 ATTATAAAAATAATATATAA
1 ATTAAAAAAATAATATATAA
80580081 CCTACTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
ATTAAAAAAATAATATATAAT
Found at i:80581946 original size:40 final size:40
Alignment explanation
Indices: 80581886--80582069 Score: 235
Period size: 40 Copynumber: 4.6 Consensus size: 40
80581876 TATTCGAATG
* *
80581886 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * * *
80581926 ATATCTGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACT
* * *
80581966 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * *
80582006 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
80582046 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
80582070 CTTGTGCGAG
Statistics
Matches: 121, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 118 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:80587302 original size:40 final size:38
Alignment explanation
Indices: 80587210--80587306 Score: 104
Period size: 40 Copynumber: 2.5 Consensus size: 38
80587200 ACCATCTCCG
* *
80587210 TCCAACCCAACACACCATGTGGAGATAAAATCGACCCA
1 TCCAACCCTACACACCATATGGAGATAAAATCGACCCA
* * * * * *
80587248 CCCATCCTTGCACACCGTATATGGGGATATAATCGACCCA
1 TCCAACCCTACACACC--ATATGGAGATAAAATCGACCCA
80587288 TCCAACCCTACACACCATA
1 TCCAACCCTACACACCATA
80587307 AAGTACCGCA
Statistics
Matches: 45, Mismatches: 12, Indels: 4
0.74 0.20 0.07
Matches are distributed among these distances:
38 14 0.31
40 31 0.69
ACGTcount: A:0.34, C:0.36, G:0.12, T:0.18
Consensus pattern (38 bp):
TCCAACCCTACACACCATATGGAGATAAAATCGACCCA
Found at i:80592126 original size:27 final size:27
Alignment explanation
Indices: 80592096--80592599 Score: 549
Period size: 27 Copynumber: 18.5 Consensus size: 27
80592086 AAATTGTACA
80592096 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTT
** * *
80592123 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGATTTGACTATGTT
* * * **
80592150 GTACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTT
*
80592177 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTT
80592205 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTT
** * *
80592232 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGATTTGACTATGTT
* * **
80592259 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTT
* *
80592286 GCACTAAGTATGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTT
80592314 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTT
** * *
80592341 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGATTTGACTATGTT
* * **
80592368 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTT
*
80592395 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTT
80592423 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTT
** * *
80592450 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGATTTGACTATGTT
* * * **
80592477 GCACTAAGTGTGCGAATTGTCCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTT
*
80592504 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTT
* * *
80592532 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGATTTGACTATGTT
* * * *
80592559 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTT
*
80592586 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
80592600 GACTCAATAT
Statistics
Matches: 406, Mismatches: 67, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
27 316 0.78
28 90 0.22
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTT
Found at i:80592286 original size:109 final size:109
Alignment explanation
Indices: 80592095--80592599 Score: 904
Period size: 109 Copynumber: 4.6 Consensus size: 109
80592085 TAAATTGTAC
*
80592095 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGTACTAAGTG
1 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
80592160 TGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
66 TGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
80592204 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
1 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
*
80592269 TGCGAATTGACCATGCGGCACTAAGTATGCGAGTTTGACTATGT
66 TGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
80592313 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
1 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
80592378 TGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
66 TGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
80592422 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
1 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
*
80592487 TGCGAATTGTCCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
66 TGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
* * * ** * *
80592531 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-ATAGCACTGAGT
1 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGT
80592595 GTGCG
65 GTGCG
80592600 GACTCAATAT
Statistics
Matches: 384, Mismatches: 11, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
108 2 0.01
109 382 0.99
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (109 bp):
AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
TGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:80594890 original size:24 final size:24
Alignment explanation
Indices: 80594863--80594919 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
80594853 CTATCTAGAG
*
80594863 CTTCTCGATATGCTTCTTTGTGAA
1 CTTCTCGATAAGCTTCTTTGTGAA
* *
80594887 CTTC-CTAATAAGGTTCTTTGTGAA
1 CTTCTC-GATAAGCTTCTTTGTGAA
80594911 CTTCTCGAT
1 CTTCTCGAT
80594920 TAAGGCTCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
23 1 0.04
24 25 0.93
25 1 0.04
ACGTcount: A:0.19, C:0.21, G:0.16, T:0.44
Consensus pattern (24 bp):
CTTCTCGATAAGCTTCTTTGTGAA
Found at i:80594929 original size:25 final size:24
Alignment explanation
Indices: 80594877--80594929 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
80594867 TCGATATGCT
* *
80594877 TCTTTGTGAACTTCCTAATAAGGT
1 TCTTTGTGAACTTCCGAATAAGGC
*
80594901 TCTTTGTGAACTTCTCGATTAAGGC
1 TCTTTGTGAACTTC-CGAATAAGGC
80594926 TCTT
1 TCTT
80594930 ATGAGCTTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 14 0.56
25 11 0.44
ACGTcount: A:0.21, C:0.19, G:0.17, T:0.43
Consensus pattern (24 bp):
TCTTTGTGAACTTCCGAATAAGGC
Found at i:80596844 original size:14 final size:13
Alignment explanation
Indices: 80596820--80596861 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
80596810 GCTATTAACC
80596820 AAAAAAT-AATACA
1 AAAAAATAAATA-A
80596833 AAAAAATAAATAA
1 AAAAAATAAATAA
*
80596846 AACAACATAAATAA
1 AA-AAAATAAATAA
80596860 AA
1 AA
80596862 CATTTTTCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 10 0.38
14 16 0.62
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (13 bp):
AAAAAATAAATAA
Found at i:80599299 original size:29 final size:29
Alignment explanation
Indices: 80599265--80599322 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
80599255 CTATTACAAC
80599265 AATAAAAATTTTCAAACCACAATTAAATT
1 AATAAAAATTTTCAAACCACAATTAAATT
80599294 AATAAAAATTTTCAAACCACAATTAAATT
1 AATAAAAATTTTCAAACCACAATTAAATT
80599323 CAGAACCGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (29 bp):
AATAAAAATTTTCAAACCACAATTAAATT
Found at i:80606702 original size:44 final size:44
Alignment explanation
Indices: 80606645--80606731 Score: 115
Period size: 44 Copynumber: 2.0 Consensus size: 44
80606635 GCCTCAAGGC
**
80606645 CTTATCTCTCTGAGGTAGCAA-GAGAGCAGGTTGAAGATTGAAGT
1 CTTATCTCTCTGAGGTAGCAAGGA-AGCAGACTGAAGATTGAAGT
*
80606689 CTTATCT-TCCTGAGGTAGTAAGGAAGCAGACTGAAGATTGAAG
1 CTTATCTCT-CTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAG
80606732 ATTGGAAGAG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 1 0.03
44 35 0.92
45 2 0.05
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (44 bp):
CTTATCTCTCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGT
Found at i:80606723 original size:148 final size:148
Alignment explanation
Indices: 80606520--80606962 Score: 735
Period size: 148 Copynumber: 3.0 Consensus size: 148
80606510 ATCGGCAATG
* * * *
80606520 GAGCAGATTGAAGATTGAAGTCTTATCTTCCCGAGGTAGCAAGGAAGTAGACTGAAGATTAAAGA
1 GAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
*
80606585 TTGGAAGAGGCGAATCTTATCTCCATGTATTGGCAATGGAGCAGATTTAAGCCTCAAGGCCTTAT
66 TTGGAAGAGGCGAATCTTATCTCCATGTACTGGCAATGGAGCAGATTTAAGCCTCAAGGCCTTAT
80606650 CTCTCTGAGGTAGCAAGA
131 CTCTCTGAGGTAGCAAGA
*
80606668 GAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTGAAGATTGAAGA
1 GAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
*
80606733 TTGGAAGAGGCGAATCTTATCTCCATGTACTGGCAATGGAGTAGATTTAAGCCTCAAGGCCTTAT
66 TTGGAAGAGGCGAATCTTATCTCCATGTACTGGCAATGGAGCAGATTTAAGCCTCAAGGCCTTAT
80606798 CTCTCTGAGGTAGCAAGA
131 CTCTCTGAGGTAGCAAGA
* * * *
80606816 GAGTAAGTTAAAGATTGAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
1 GAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
* * *
80606881 ATGGAAGAGGCGAATCTTATCTCCATGTACTGGCAATGGAGCAGATTTAAGCCTCAAAGCCTCAT
66 TTGGAAGAGGCGAATCTTATCTCCATGTACTGGCAATGGAGCAGATTTAAGCCTCAAGGCCTTAT
*
80606946 CT-TCCTGAGGTAACAAG
131 CTCT-CTGAGGTAGCAAG
80606963 GAAACAGACT
Statistics
Matches: 277, Mismatches: 17, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
147 1 0.00
148 276 1.00
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (148 bp):
GAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
TTGGAAGAGGCGAATCTTATCTCCATGTACTGGCAATGGAGCAGATTTAAGCCTCAAGGCCTTAT
CTCTCTGAGGTAGCAAGA
Found at i:80610629 original size:40 final size:40
Alignment explanation
Indices: 80610584--80611407 Score: 1409
Period size: 40 Copynumber: 20.6 Consensus size: 40
80610574 CAAGCTCAAT
* * * * * *
80610584 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTAGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80610624 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
*
80610664 TGCCTTCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
80610704 CGCCGTCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80610744 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
80610784 TGCCTTCGGGTCTTCGCCCGGATATATCAATTCACACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80610824 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80610864 TGCCTTCCGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80610904 TGCCTTC-GGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
80610943 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80610983 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80611023 TGCCTTCGGGTCTTAGCCCGTATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80611063 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
80611103 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80611143 TGCCTTCTGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80611183 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80611223 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80611263 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
80611303 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
80611343 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
80611383 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
80611408 CATTCAAATG
Statistics
Matches: 744, Mismatches: 37, Indels: 6
0.95 0.05 0.01
Matches are distributed among these distances:
39 40 0.05
40 703 0.94
41 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:80617424 original size:40 final size:40
Alignment explanation
Indices: 80617379--80618355 Score: 1623
Period size: 40 Copynumber: 24.6 Consensus size: 40
80617369 CAAGCTCAAT
* * * * *
80617379 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTT-ACACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
*
80617419 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
80617459 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * **
80617499 CGCCGTCGGGTCTTAGCCCGGATATATCTGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80617539 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
80617579 TGCCTTCGGGTCTTATCCCGGATATATCAAATCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80617619 TGCCTTCGGGTCTTCGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80617659 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80617699 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80617739 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
80617779 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80617819 TGCCTTCGGGTCTTA-TCC-GAT-TATC-ATTCG--CAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80617853 TG-CTTCGGGTCTTATCCCGGATATATCAATTCGCAC-AA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80617891 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80617931 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
80617971 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80618011 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80618051 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
80618091 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80618131 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
80618171 TGCCTTCGGGTCTTAGTCCGGATATATCATTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
80618211 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80618251 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
80618291 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
80618331 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
80618356 CATTCAAATG
Statistics
Matches: 888, Mismatches: 40, Indels: 18
0.94 0.04 0.02
Matches are distributed among these distances:
33 12 0.01
34 8 0.01
35 3 0.00
36 9 0.01
37 9 0.01
38 7 0.01
39 39 0.04
40 801 0.90
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:80632623 original size:92 final size:93
Alignment explanation
Indices: 80632486--80632663 Score: 295
Period size: 92 Copynumber: 1.9 Consensus size: 93
80632476 CATTTCTTAG
* * *
80632486 CCTTTATTTACTTTTGTTAAGATTGAGCTCTGATTAGATATTTTGTTTTGGGTTTAATTGTTGAT
1 CCTTTATTTACTTTTATTAAGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAATTGTTGAT
80632551 TCATCTTTTTTCTATTATTTCTTCTTCA
66 TCATCTTTTTTCTATTATTTCTTCTTCA
* * *
80632579 CCTTTATTTAC-TTTATTAGGATTGAACTCTTATTAGAGATTTTGTTTTGGGTTTAATTGTTTAT
1 CCTTTATTTACTTTTATTAAGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAATTGTTGAT
80632643 TCATCTTTTTTCTATTATTTC
66 TCATCTTTTTTCTATTATTTC
80632664 CTGGTAGCTC
Statistics
Matches: 79, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
92 68 0.86
93 11 0.14
ACGTcount: A:0.19, C:0.11, G:0.12, T:0.57
Consensus pattern (93 bp):
CCTTTATTTACTTTTATTAAGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAATTGTTGAT
TCATCTTTTTTCTATTATTTCTTCTTCA
Found at i:80634186 original size:20 final size:19
Alignment explanation
Indices: 80634141--80634178 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
80634131 TATCCAAACA
80634141 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
80634160 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
80634179 TTCAGAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.26
Consensus pattern (19 bp):
CCAGAAAAGTAAATCATTT
Found at i:80635424 original size:26 final size:28
Alignment explanation
Indices: 80635394--80635446 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
80635384 AAACTTTTCT
*
80635394 AAAAG-AAAAC-TCAAGAGAAATTATTG
1 AAAAGAAAAACTTAAAGAGAAATTATTG
*
80635420 AAAAGAAAAACTTAAAGAGAATTTATT
1 AAAAGAAAAACTTAAAGAGAAATTATT
80635447 AACTCAAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 5 0.22
27 5 0.22
28 13 0.57
ACGTcount: A:0.58, C:0.06, G:0.13, T:0.23
Consensus pattern (28 bp):
AAAAGAAAAACTTAAAGAGAAATTATTG
Found at i:80638420 original size:41 final size:40
Alignment explanation
Indices: 80638293--80638437 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
80638283 CTCGCACAAG
* * * * * *
80638293 GCCTTCGGGTCTTAACCCGAATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
*
80638333 GCCTTCGGGACTTAGCCCGGATATAGTTGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
80638373 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
80638414 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
80638438 CATTCGAGTA
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.03
40 56 0.63
41 27 0.30
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:80648553 original size:14 final size:14
Alignment explanation
Indices: 80648534--80648563 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
80648524 TAATCTGCAT
80648534 TGGATGGCCTTGAG
1 TGGATGGCCTTGAG
80648548 TGGATGGCCTTGAG
1 TGGATGGCCTTGAG
80648562 TG
1 TG
80648564 CCGGATGGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.43, T:0.30
Consensus pattern (14 bp):
TGGATGGCCTTGAG
Done.