Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 245 of 333
Found at i:80652968 original size:15 final size:15
Alignment explanation
Indices: 80652932--80652960 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
80652922 ATAAGTGTTG
80652932 AAAATATAAAATGAA
1 AAAATATAAAATGAA
80652947 AAAATAT-AAATGAA
1 AAAATATAAAATGAA
80652961 TTAAATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (15 bp):
AAAATATAAAATGAA
Found at i:80660551 original size:46 final size:46
Alignment explanation
Indices: 80660399--80660617 Score: 185
Period size: 46 Copynumber: 4.7 Consensus size: 46
80660389 TCATTTGTGT
* * *
80660399 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCAC-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGA
* * * * *
80660445 GCTAGTGTAAGACGATGTCTGAGACATGGCATCGACATTGAGACGAGA
1 GCTAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCCTCGAGATGAGA
*
80660493 GCTAGAGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGA
* * * * * * *
80660539 GCCAGTGTAAGACATGTTTGGGACATGTATTGG-ATAGTGATGAGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAG--A
* * *
80660586 G-TTGTGTAAGACATGTTTGGGACATGTATCGG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG
80660618 ATAGTGATGA
Statistics
Matches: 141, Mismatches: 25, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
44 1 0.01
45 6 0.04
46 83 0.59
47 26 0.18
48 24 0.17
49 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.26
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGA
Found at i:80660620 original size:46 final size:46
Alignment explanation
Indices: 80660543--80660637 Score: 181
Period size: 46 Copynumber: 2.1 Consensus size: 46
80660533 ATGTAAGCCA
*
80660543 GTGTAAGACATGTTTGGGACATGTATTGGATAGTGATGAGTAAGTT
1 GTGTAAGACATGTTTGGGACATGTATCGGATAGTGATGAGTAAGTT
80660589 GTGTAAGACATGTTTGGGACATGTATCGGATAGTGATGAGTAAGTT
1 GTGTAAGACATGTTTGGGACATGTATCGGATAGTGATGAGTAAGTT
80660635 GTG
1 GTG
80660638 AGTGGTGCAG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.27, C:0.05, G:0.34, T:0.34
Consensus pattern (46 bp):
GTGTAAGACATGTTTGGGACATGTATCGGATAGTGATGAGTAAGTT
Found at i:80664405 original size:18 final size:18
Alignment explanation
Indices: 80664367--80664405 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
80664357 TGACATGGCA
*
80664367 AAAAAAAAAAAAAATCAT
1 AAAAAAAAAAAAAACCAT
* *
80664385 AAAACAAAAAAAAACCCT
1 AAAAAAAAAAAAAACCAT
80664403 AAA
1 AAA
80664406 TCCCTAAACC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.79, C:0.13, G:0.00, T:0.08
Consensus pattern (18 bp):
AAAAAAAAAAAAAACCAT
Found at i:80664907 original size:117 final size:117
Alignment explanation
Indices: 80664699--80664909 Score: 323
Period size: 117 Copynumber: 1.8 Consensus size: 117
80664689 TTTGATTTGT
* * * *
80664699 TGGTTATTTGTGATTTAGCATTGCAATTTGAGTGCGACAATGTAGGGTTTGTTTTGTCAATTTTT
1 TGGTTAATTGTGATTTAGCATTGCAATTTCAGTGCCACAATGTAGGGTTTGTTTTGTCAATTTAT
*
80664764 GATGCGATAGTGGTCCCGATGTTGTTGATAAAACTGTTGTAAAAATTGTATA
66 GATGCGATAGTGGTCCCGATGATGTTGATAAAACTGTTGTAAAAATTGTATA
** ** * *
80664816 TGGTTAATTGTGATTTATTATTGCAATTTCAGTGCCAGGATGTAGGGTTTGTTTTTTCGATTTAT
1 TGGTTAATTGTGATTTAGCATTGCAATTTCAGTGCCACAATGTAGGGTTTGTTTTGTCAATTTAT
80664881 GATGCGATAGTGGTCCCGATGATGTTGAT
66 GATGCGATAGTGGTCCCGATGATGTTGAT
80664910 TTCTATTACC
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
117 83 1.00
ACGTcount: A:0.23, C:0.09, G:0.26, T:0.43
Consensus pattern (117 bp):
TGGTTAATTGTGATTTAGCATTGCAATTTCAGTGCCACAATGTAGGGTTTGTTTTGTCAATTTAT
GATGCGATAGTGGTCCCGATGATGTTGATAAAACTGTTGTAAAAATTGTATA
Found at i:80665797 original size:51 final size:51
Alignment explanation
Indices: 80665738--80665889 Score: 232
Period size: 51 Copynumber: 3.0 Consensus size: 51
80665728 GTTGCTGGTA
* * * *
80665738 ATGAATATGCTAGTAATTCTGCAACCTCAGATGGAGTGGATAATGTTGCTG
1 ATGAATATGCTGGTGATTTTGCAACATCAGATGGAGTGGATAATGTTGCTG
* * *
80665789 ATGAATATGTTGGTGATTTTACAACATCAGATGGAGTGGATAATATTGCTG
1 ATGAATATGCTGGTGATTTTGCAACATCAGATGGAGTGGATAATGTTGCTG
*
80665840 ATGAATATGCTGGTGATTTTGCAACATCAGATGGACTGGATAATGTTGCT
1 ATGAATATGCTGGTGATTTTGCAACATCAGATGGAGTGGATAATGTTGCT
80665890 ACTGCACGTA
Statistics
Matches: 90, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 90 1.00
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.34
Consensus pattern (51 bp):
ATGAATATGCTGGTGATTTTGCAACATCAGATGGAGTGGATAATGTTGCTG
Found at i:80669651 original size:33 final size:33
Alignment explanation
Indices: 80669614--80669693 Score: 85
Period size: 32 Copynumber: 2.5 Consensus size: 33
80669604 TCACGATTTG
* ** *
80669614 GTTTTAAGGGATTTCATGATTTTGTTCCTAATA
1 GTTTTAAGGGATTTCACGATTTCATTCCTAAAA
*
80669647 GTTTT-AGGGA-TTCAACGATTTCATTCGTAAAA
1 GTTTTAAGGGATTTC-ACGATTTCATTCCTAAAA
80669679 GTTTTAA-GGATTTCA
1 GTTTTAAGGGATTTCA
80669694 AGAAGATTTC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
31 3 0.08
32 27 0.69
33 9 0.23
ACGTcount: A:0.28, C:0.10, G:0.19, T:0.44
Consensus pattern (33 bp):
GTTTTAAGGGATTTCACGATTTCATTCCTAAAA
Found at i:80680150 original size:40 final size:40
Alignment explanation
Indices: 80680095--80680312 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
80680085 CGGATGATAA
*
80680095 CCGGGCTAAGTCCCGAAGGCATTTGTGCGGGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
80680135 CCGGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
80680175 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
**
80680215 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
80680255 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
80680295 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
80680313 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 16 0.10
40 147 0.90
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:80689778 original size:47 final size:47
Alignment explanation
Indices: 80689727--80689902 Score: 237
Period size: 47 Copynumber: 3.7 Consensus size: 47
80689717 TTAGGATTCT
* * *
80689727 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
80689774 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
80689821 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
80689868 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
80689903 TCCCGAAGGG
Statistics
Matches: 115, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
46 1 0.01
47 114 0.99
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:80690077 original size:37 final size:37
Alignment explanation
Indices: 80690021--80690099 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
80690011 CCGAGCTCTA
* * *
80690021 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
80690058 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
80690095 AAGAC
1 AAGAC
80690100 TTCGAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:80696967 original size:39 final size:40
Alignment explanation
Indices: 80696924--80697091 Score: 121
Period size: 40 Copynumber: 4.2 Consensus size: 40
80696914 CTCGTTCAAG
* * *
80696924 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACATAACCCGGATTATA-AAACTCACACGAA
* * *
80696963 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACATAACCCGGATTATAAAACTCACACGAA
* * * * *
80697003 TGCCTTCGGGACTTAACCCGAAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACATAACCCG-GATTA-TAAAACTCACACGAA
* * * * *
80697043 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACATAACCCGG-ATTATAAAACTCACACGAA
80697083 TGCCTTCGG
1 TGCCTTCGG
80697092 ATCTTAGTCC
Statistics
Matches: 108, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
39 26 0.24
40 78 0.72
41 3 0.03
42 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACATAACCCGGATTATAAAACTCACACGAA
Found at i:80697104 original size:40 final size:40
Alignment explanation
Indices: 80696961--80697091 Score: 192
Period size: 40 Copynumber: 3.3 Consensus size: 40
80696951 TAACTCATAC
* *
80696961 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* * *
80697001 AATGCCTTCGGGACTTAACCCGAAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
80697041 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
80697081 AATGCCTTCGG
1 AATGCCTTCGG
80697092 ATCTTAGTCC
Statistics
Matches: 80, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
39 3 0.04
40 77 0.96
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:80706168 original size:48 final size:48
Alignment explanation
Indices: 80705944--80706167 Score: 301
Period size: 48 Copynumber: 4.7 Consensus size: 48
80705934 AGTACCAATT
* * *
80705944 CCATGTCCCCGACATGGTCTTACAT--GAATTCACATATCATCGTCGATG
1 CCATGTCCCAGACATGGTCTTACATAGGCA--CACATATCATCGCCGATG
*
80705992 GCATGTCCCAGACATGGTCTTACACTA-GCACACATATCATCGCCGATG
1 CCATGTCCCAGACATGGTCTTACA-TAGGCACACATATCATCGCCGATG
* * *
80706040 CCATGTCCCAAACATGGTCTTACACAGACACACATATCATCGCCGATG
1 CCATGTCCCAGACATGGTCTTACATAGGCACACATATCATCGCCGATG
* * * *
80706088 CCATGTCCCAGACATGATCTTACACAGGCACATATATCATCGCTGATG
1 CCATGTCCCAGACATGGTCTTACATAGGCACACATATCATCGCCGATG
80706136 CCATGTCCCAGACATGGTCTTACATAGGCACA
1 CCATGTCCCAGACATGGTCTTACATAGGCACA
80706168 TTCAGCACAG
Statistics
Matches: 158, Mismatches: 15, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
47 1 0.01
48 154 0.97
49 1 0.01
50 2 0.01
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACATAGGCACACATATCATCGCCGATG
Found at i:80708535 original size:13 final size:13
Alignment explanation
Indices: 80708497--80708548 Score: 63
Period size: 13 Copynumber: 4.1 Consensus size: 13
80708487 AGTTTGGCAA
80708497 TGCTTTTG-AAAG
1 TGCTTTTGAAAAG
*
80708509 TGC-TGTGAAAAAG
1 TGCTTTTG-AAAAG
*
80708522 TGCTTTTGATAAG
1 TGCTTTTGAAAAG
80708535 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
80708548 T
1 T
80708549 TTGGTTTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
11 3 0.09
12 3 0.09
13 24 0.73
14 3 0.09
ACGTcount: A:0.29, C:0.08, G:0.25, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:80709620 original size:15 final size:15
Alignment explanation
Indices: 80709595--80709663 Score: 86
Period size: 15 Copynumber: 4.6 Consensus size: 15
80709585 GAGATGACAT
*
80709595 GAAAACCAAGATAAA
1 GAAATCCAAGATAAA
* *
80709610 GAAGTCCAAGAAAAA
1 GAAATCCAAGATAAA
*
80709625 GAAATCCATGATAAA
1 GAAATCCAAGATAAA
80709640 GAAATCCAAGATACAA
1 GAAATCCAAGATA-AA
80709656 -AAATCCAA
1 GAAATCCAA
80709664 AATACTATAT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
15 44 0.96
16 2 0.04
ACGTcount: A:0.59, C:0.16, G:0.13, T:0.12
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:80716318 original size:96 final size:96
Alignment explanation
Indices: 80716154--80716340 Score: 365
Period size: 96 Copynumber: 1.9 Consensus size: 96
80716144 TCTGGATATG
*
80716154 GACTGGTTAACTCAACATGAAGCAGTGGTAAACTGCAAACAAAATCATATTGTATTGAAATTTTA
1 GACTGGTTAACTCAACATGAAACAGTGGTAAACTGCAAACAAAATCATATTGTATTGAAATTTTA
80716219 GAATGGTGAAATGCTCTGTATTGAATGTATA
66 GAATGGTGAAATGCTCTGTATTGAATGTATA
80716250 GACTGGTTAACTCAACATGAAACAGTGGTAAACTGCAAACAAAATCATATTGTATTGAAATTTTA
1 GACTGGTTAACTCAACATGAAACAGTGGTAAACTGCAAACAAAATCATATTGTATTGAAATTTTA
80716315 GAATGGTGAAATGCTCTGTATTGAAT
66 GAATGGTGAAATGCTCTGTATTGAAT
80716341 CTAATAAAGT
Statistics
Matches: 90, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 90 1.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (96 bp):
GACTGGTTAACTCAACATGAAACAGTGGTAAACTGCAAACAAAATCATATTGTATTGAAATTTTA
GAATGGTGAAATGCTCTGTATTGAATGTATA
Found at i:80733347 original size:27 final size:26
Alignment explanation
Indices: 80733303--80733354 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
80733293 CTCGCTGCAA
*
80733303 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
80733330 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
80733355 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:80733403 original size:67 final size:67
Alignment explanation
Indices: 80733284--80733437 Score: 265
Period size: 67 Copynumber: 2.3 Consensus size: 67
80733274 GAGGAAGCGT
*
80733284 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTAGCCACATATATCTGTTCTGGTGACTTCGTCACAA
80733349 TA
66 TA
*
80733351 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTAGCCAC-TATATCTGTATTTGGTGACTTCGTCACA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTAGCCACATATATCTGT-TCTGGTGACTTCGTCACA
80733415 ATA
65 ATA
*
80733418 TCTGGAAGCCTCGCTGCAAT
1 TCTGGCAGCCTCGCTGCAAT
80733438 TTTTGTGGTT
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
66 9 0.11
67 74 0.89
ACGTcount: A:0.19, C:0.29, G:0.23, T:0.30
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTAGCCACATATATCTGTTCTGGTGACTTCGTCACAA
TA
Found at i:80738558 original size:43 final size:42
Alignment explanation
Indices: 80738504--80738610 Score: 153
Period size: 43 Copynumber: 2.5 Consensus size: 42
80738494 TGAGATTACA
* *
80738504 TGTAAGACCATGTTTGGGACATTGGCAT-TGTATTGTGATTATG
1 TGTAAGACCATGTCTGGGACATTGGCATAT-TAAT-TGATTATG
80738547 TGTAAGACCATGTCTGGGACATTGGCATCATTAATTGATTATG
1 TGTAAGACCATGTCTGGGACATTGGCAT-ATTAATTGATTATG
*
80738590 TGTAAGACCCTGTCTGGGACA
1 TGTAAGACCATGTCTGGGACA
80738611 GTAGCATCGA
Statistics
Matches: 59, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
43 55 0.93
44 3 0.05
45 1 0.02
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.35
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATATTAATTGATTATG
Found at i:80741871 original size:15 final size:15
Alignment explanation
Indices: 80741836--80741875 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 15
80741826 CTTTTTCTAC
80741836 CAAATTATAAACAATT
1 CAAA-TATAAACAATT
80741852 CAAATATACAACAATT
1 CAAATATA-AACAATT
80741868 -AAATATAA
1 CAAATATAA
80741876 TCATACCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 1 0.04
15 11 0.48
16 11 0.48
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (15 bp):
CAAATATAAACAATT
Found at i:80744520 original size:84 final size:85
Alignment explanation
Indices: 80744310--80744655 Score: 295
Period size: 84 Copynumber: 4.1 Consensus size: 85
80744300 ACCACCACTG
* * ** * * ** *
80744310 ATTTGCAATTACTGTCACTTGTCATG-GGGCACAACATATTTACATATTAAACAAACTACCACTT
1 ATTTGCAGTTACTGCCACTTGTTGTGAGTGCACAACATATTTACAGAGCAAACAAACTGCCACTT
* *
80744374 GGTTCGTTATTGAACCACACT
66 GGTTTGTGATTGAACCACA-T
* ** * * ** *
80744395 GTTTTTAGTTACTGCCGCTTGTTGTGAGTGCACGACATATTTGTAG-GCAAACAAACTGTCACTT
1 ATTTGCAGTTACTGCCACTTGTTGTGAGTGCACAACATATTTACAGAGCAAACAAACTGCCACTT
*
80744459 GGTTTGTGATTGAACCATAT
66 GGTTTGTGATTGAACCACAT
* * * ** * *
80744479 ATTTGCAGTTACTGCCACTTTTTGTGGGTGCACAATATATTTACAGATTAAACAAAGTGCCACTC
1 ATTTGCAGTTACTGCCACTTGTTGTGAGTGCACAACATATTTACAGAGCAAACAAACTGCCACTT
80744544 GGTTTGTGATTGAACCACAT
66 GGTTTGTGATTGAACCACAT
* * * * ** *
80744564 A-TTGCAGTTACT-CAAACTTGTTGTGAGTACACAACATATTTGCATATTAAACAAATTGCCACT
1 ATTTGCAGTTACTGC-CACTTGTTGTGAGTGCACAACATATTTACAGAGCAAACAAACTGCCACT
** *
80744627 CAGTTCGTGATTGAACCACACT
65 TGGTTTGTGATTGAACCACA-T
*
80744649 GTTTGCA
1 ATTTGCA
80744656 AATTGAACTA
Statistics
Matches: 209, Mismatches: 47, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
83 1 0.00
84 107 0.51
85 82 0.39
86 19 0.09
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (85 bp):
ATTTGCAGTTACTGCCACTTGTTGTGAGTGCACAACATATTTACAGAGCAAACAAACTGCCACTT
GGTTTGTGATTGAACCACAT
Found at i:80752598 original size:5 final size:5
Alignment explanation
Indices: 80752590--80752615 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
80752580 AGTAAATACT
80752590 TTTTA TTTTA TTTTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA T
80752616 CCAATTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:80757660 original size:17 final size:18
Alignment explanation
Indices: 80757627--80757665 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
80757617 TTCATGAACT
80757627 ACACTAGGGTTTCTAGGGC
1 ACACTAGGG-TTCTAGGGC
80757646 ACACTAGGG-TCTAGGGC
1 ACACTAGGGTTCTAGGGC
80757663 ACA
1 ACA
80757666 TTCTTTGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 11 0.55
19 9 0.45
ACGTcount: A:0.26, C:0.23, G:0.31, T:0.21
Consensus pattern (18 bp):
ACACTAGGGTTCTAGGGC
Found at i:80761404 original size:46 final size:46
Alignment explanation
Indices: 80761337--80761506 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
80761327 TGTAACCCGC
80761337 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
80761383 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-AC-T
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
** * * * *
80761432 -TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
80761476 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAG
80761507 TTTGGATGCT
Statistics
Matches: 101, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 2 0.02
45 2 0.02
46 58 0.57
47 27 0.27
48 3 0.03
49 2 0.02
50 1 0.01
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:80761503 original size:93 final size:93
Alignment explanation
Indices: 80761344--80761515 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
80761334 CGCCCATAAG
* *
80761344 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
80761409 ACGAGCTCGGATGCCTAGTTACTTTTCA
66 ACGAGCTCGGATGCCTAGTTACTTTTCA
*
80761437 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
80761502 ACGAGTTTGGATGC
66 ACGAGCTCGGATGC
80761516 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACTTTTCA
Found at i:80775878 original size:40 final size:43
Alignment explanation
Indices: 80775847--80775998 Score: 159
Period size: 43 Copynumber: 3.6 Consensus size: 43
80775837 TGATTCCTGC
* * *
80775847 AAGACCACGTTTGGGACATTGGCATCGATTTGTGATTTACGTGT
1 AAGACCACGTCTGGGACATTGGCATCGA-TTGTGAGTTACATGT
* * * *
80775891 AAGACCATGTCTGGGACATCGGCATTG--TATGAGTT-CATGT
1 AAGACCACGTCTGGGACATTGGCATCGATTGTGAGTTACATGT
** *
80775931 AAGACCTTGTCTGGGACAGTGGCATCGATATGTGA-TTACATGT
1 AAGACCACGTCTGGGACATTGGCATCGAT-TGTGAGTTACATGT
*
80775974 AAGACCACGTCTGGGACGTTGGCAT
1 AAGACCACGTCTGGGACATTGGCAT
80775999 TGTACAAGCT
Statistics
Matches: 88, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
40 27 0.31
41 6 0.07
42 2 0.02
43 30 0.34
44 23 0.26
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (43 bp):
AAGACCACGTCTGGGACATTGGCATCGATTGTGAGTTACATGT
Found at i:80787569 original size:2 final size:2
Alignment explanation
Indices: 80787562--80787591 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
80787552 GAAGAAAAAT
80787562 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
80787592 AGAAGAGGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:80791603 original size:14 final size:14
Alignment explanation
Indices: 80791584--80791616 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
80791574 AAGGTTGATG
*
80791584 CTTATGTAATGTAT
1 CTTATGAAATGTAT
80791598 CTTATGAAATGTAT
1 CTTATGAAATGTAT
80791612 -TTATG
1 CTTATG
80791617 GTATAAATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.30, C:0.06, G:0.15, T:0.48
Consensus pattern (14 bp):
CTTATGAAATGTAT
Found at i:80797019 original size:22 final size:22
Alignment explanation
Indices: 80796993--80797064 Score: 110
Period size: 22 Copynumber: 3.3 Consensus size: 22
80796983 CTAAGTCAAT
*
80796993 AGGACGGCTCAACGCCATAGAC
1 AGGACGGCTCAACGCCGTAGAC
*
80797015 AGGACGACTCAAC-CCTGTAGAC
1 AGGACGGCTCAACGCC-GTAGAC
80797037 AGGACGGCTCAACGCCGTAGAC
1 AGGACGGCTCAACGCCGTAGAC
80797059 AGGACG
1 AGGACG
80797065 ACTAAAAGCC
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
21 2 0.04
22 41 0.91
23 2 0.04
ACGTcount: A:0.31, C:0.31, G:0.29, T:0.10
Consensus pattern (22 bp):
AGGACGGCTCAACGCCGTAGAC
Found at i:80797075 original size:22 final size:21
Alignment explanation
Indices: 80797010--80797077 Score: 73
Period size: 22 Copynumber: 3.1 Consensus size: 21
80797000 CTCAACGCCA
* *
80797010 TAGACAGGACGACTCAACCCTG
1 TAGACAGGACGACTAAAGCC-G
* *
80797032 TAGACAGGACGGCTCAACGCCG
1 TAGACAGGACGACT-AAAGCCG
80797054 TAGACAGGACGACTAAAAGCCG
1 TAGACAGGACGACT-AAAGCCG
80797076 TA
1 TA
80797078 AATATCTCAA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
22 35 0.92
23 3 0.08
ACGTcount: A:0.34, C:0.28, G:0.26, T:0.12
Consensus pattern (21 bp):
TAGACAGGACGACTAAAGCCG
Found at i:80799409 original size:48 final size:50
Alignment explanation
Indices: 80799343--80799460 Score: 116
Period size: 48 Copynumber: 2.4 Consensus size: 50
80799333 TAGTTCTCTG
** * * **
80799343 GAGCTTCCCAATAT-TGGCTCCCTTGAACTTCCCGATA-TTGGCTCGTAT
1 GAGCTTCCCGTTATATGGCTCCCTGGAACTTCCCGATACATGGCTCACAT
* * * *
80799391 GAGCTTCTCGTTA-ATGGCTCTCTGGAGCTTCCCGTTACATGGCTCACAT
1 GAGCTTCCCGTTATATGGCTCCCTGGAACTTCCCGATACATGGCTCACAT
*
80799440 GAGTTTCCCGTTATATGGCTC
1 GAGCTTCCCGTTATATGGCTC
80799461 GAAAGAGCAT
Statistics
Matches: 55, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
48 29 0.53
49 19 0.35
50 7 0.13
ACGTcount: A:0.17, C:0.28, G:0.21, T:0.34
Consensus pattern (50 bp):
GAGCTTCCCGTTATATGGCTCCCTGGAACTTCCCGATACATGGCTCACAT
Found at i:80799447 original size:25 final size:24
Alignment explanation
Indices: 80799343--80799460 Score: 85
Period size: 24 Copynumber: 4.8 Consensus size: 24
80799333 TAGTTCTCTG
** * * *
80799343 GAGCTTCCCAATATTGGCTCCCTT
1 GAGCTTCCCGTTAATGGCTCACAT
* * * **
80799367 GAACTTCCCGATATTGGCTCGTAT
1 GAGCTTCCCGTTAATGGCTCACAT
* *
80799391 GAGCTTCTCGTTAATGGCTCTC-T
1 GAGCTTCCCGTTAATGGCTCACAT
80799414 GGAGCTTCCCGTTACATGGCTCACAT
1 -GAGCTTCCCGTTA-ATGGCTCACAT
*
80799440 GAGTTTCCCGTTATATGGCTC
1 GAGCTTCCCGTTA-ATGGCTC
80799461 GAAAGAGCAT
Statistics
Matches: 76, Mismatches: 15, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
23 1 0.01
24 47 0.62
25 27 0.36
26 1 0.01
ACGTcount: A:0.17, C:0.28, G:0.21, T:0.34
Consensus pattern (24 bp):
GAGCTTCCCGTTAATGGCTCACAT
Found at i:80800968 original size:22 final size:22
Alignment explanation
Indices: 80800942--80800984 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
80800932 GATAACAACA
*
80800942 AAATATTCATAGACATGTTCAC
1 AAATATTCATAGACATATTCAC
80800964 AAATATTCATAGACATATTCA
1 AAATATTCATAGACATATTCA
80800985 TAGACATGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.33
Consensus pattern (22 bp):
AAATATTCATAGACATATTCAC
Found at i:80800981 original size:12 final size:12
Alignment explanation
Indices: 80800944--80800997 Score: 67
Period size: 12 Copynumber: 4.7 Consensus size: 12
80800934 TAACAACAAA
80800944 ATATTCATAGAC
1 ATATTCATAGAC
* *
80800956 ATGTTCACA-A-
1 ATATTCATAGAC
80800966 ATATTCATAGAC
1 ATATTCATAGAC
80800978 ATATTCATAGAC
1 ATATTCATAGAC
*
80800990 ATGTTCAT
1 ATATTCAT
80800998 CACAAGAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
10 7 0.20
11 2 0.06
12 26 0.74
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (12 bp):
ATATTCATAGAC
Found at i:80802025 original size:27 final size:27
Alignment explanation
Indices: 80801974--80802025 Score: 63
Period size: 25 Copynumber: 1.9 Consensus size: 27
80801964 AATGCACAAA
*
80801974 TTTGAAAATAATTTCTTGGAAAACACC
1 TTTGAAAATAATTTCTTAGAAAACACC
80802001 TTTG-AAA-AATTTCTTCAGAATAACA
1 TTTGAAAATAATTTCTT-AGAA-AACA
80802026 TTCTTCTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
25 8 0.36
26 6 0.27
27 8 0.36
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (27 bp):
TTTGAAAATAATTTCTTAGAAAACACC
Found at i:80804518 original size:6 final size:6
Alignment explanation
Indices: 80804488--80804624 Score: 75
Period size: 6 Copynumber: 22.3 Consensus size: 6
80804478 AAGAAACATT
* * *
80804488 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * * *
80804537 ATCAAA ATCAAA ATCAGA ATTAGA ATTAGGTA A-CAGA ATCAGA ATCGGT
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
* * *
80804586 GTCAAGTA AT-AGA ATCAGA ATCAGA ACCAGG ATCAGA AT
1 ATC-AG-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT
80804625 TAGGTAACAG
Statistics
Matches: 100, Mismatches: 20, Indels: 22
0.70 0.14 0.15
Matches are distributed among these distances:
5 7 0.07
6 82 0.82
7 7 0.07
8 4 0.04
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:80804538 original size:19 final size:19
Alignment explanation
Indices: 80804514--80804645 Score: 74
Period size: 19 Copynumber: 6.7 Consensus size: 19
80804504 AAATGAGAAT
*
80804514 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTAA
* *
80804533 CAGAATCAAAATCA--AAA
1 CAGAATCAGAATCAGGTAA
* *
80804550 TCAGAATTAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
*
80804570 CAGAATCAGAATCGGTGTCAAGTAA
1 CAGAATCAGAA------TCAGGTAA
*
80804595 TAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
* *
80804612 CCAGGATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
*
80804632 CAGAATAAGAATCA
1 CAGAATCAGAATCA
80804646 ATATCAGGTA
Statistics
Matches: 84, Mismatches: 17, Indels: 24
0.67 0.14 0.19
Matches are distributed among these distances:
17 3 0.04
18 23 0.27
19 38 0.45
20 4 0.05
25 16 0.19
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.19
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:80804543 original size:37 final size:37
Alignment explanation
Indices: 80804497--80804582 Score: 118
Period size: 37 Copynumber: 2.3 Consensus size: 37
80804487 TATCAGAACT
* * *
80804497 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAAAATCAGAATCAGAATCAGGTAAC
* *
80804534 AGAATCAAAATCAAAATCAGAATTAGAATTAGGTAAC
1 AGAATCAAAATCAAAATCAGAATCAGAATCAGGTAAC
*
80804571 AGAATCAGAATC
1 AGAATCAAAATC
80804583 GGTGTCAAGT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (37 bp):
AGAATCAAAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:80804636 original size:31 final size:32
Alignment explanation
Indices: 80804558--80804642 Score: 81
Period size: 31 Copynumber: 2.7 Consensus size: 32
80804548 AATCAGAATT
* *
80804558 AGAATTAGGTAACAGAATCAGAATCGGTGTCA
1 AGAATTAGGTAACAGAATCAGAACCGGTATCA
80804590 AGTAA-TA-G-AATCAGAATCAGAACCAGG-ATC-
1 AG-AATTAGGTAA-CAGAATCAGAACC-GGTATCA
*
80804620 AGAATTAGGTAACAGAATAAGAA
1 AGAATTAGGTAACAGAATCAGAA
80804643 TCAATATCAG
Statistics
Matches: 44, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
29 2 0.05
30 6 0.14
31 26 0.59
32 8 0.18
33 2 0.05
ACGTcount: A:0.47, C:0.12, G:0.22, T:0.19
Consensus pattern (32 bp):
AGAATTAGGTAACAGAATCAGAACCGGTATCA
Found at i:80804645 original size:25 final size:25
Alignment explanation
Indices: 80804617--80804674 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
80804607 CAGAACCAGG
*
80804617 ATCAGAATTAGGTAACAGAATAAGA
1 ATCAGAATCAGGTAACAGAATAAGA
* *
80804642 ATCA-ATATCAGGTAACAGAATTATA
1 ATCAGA-ATCAGGTAACAGAATAAGA
80804667 ATCAGAAT
1 ATCAGAAT
80804675 GTGAATGCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 1 0.04
25 26 0.93
26 1 0.04
ACGTcount: A:0.50, C:0.10, G:0.16, T:0.24
Consensus pattern (25 bp):
ATCAGAATCAGGTAACAGAATAAGA
Found at i:80804662 original size:62 final size:62
Alignment explanation
Indices: 80804509--80804673 Score: 188
Period size: 62 Copynumber: 2.7 Consensus size: 62
80804499 AATCAAAATG
* * * *
80804509 AGAATCAGAATCAGA-ATCAGGTGACAGAATCAAAATCAAAATCAGAATTAGAATTAGGTAAC
1 AGAATCAGAATCA-ATATCAGGTAACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAAC
** * * * * *
80804571 AGAATCAGAATCGGTGTCAAGTAATAGAATCAGAATCAGAACCAGGATCAGAATTAGGTAAC
1 AGAATCAGAATCAATATCAGGTAACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAAC
* * *
80804633 AGAATAAGAATCAATATCAGGTAACAGAATTATAATCAGAA
1 AGAATCAGAATCAATATCAGGTAACAGAATCAAAATCAGAA
80804674 TGTGAATGCA
Statistics
Matches: 83, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
62 83 1.00
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (62 bp):
AGAATCAGAATCAATATCAGGTAACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAAC
Found at i:80804929 original size:27 final size:26
Alignment explanation
Indices: 80804889--80804939 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
80804879 TGAGGCTGCC
*
80804889 AGATATTATGGCGAAGTCACCAGAAT
1 AGATATTATGGCGAAGCCACCAGAAT
* *
80804915 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TATGGCGAAGCCACCAGA
80804940 TTGTAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTATGGCGAAGCCACCAGAAT
Found at i:80805298 original size:81 final size:81
Alignment explanation
Indices: 80805183--80805487 Score: 441
Period size: 81 Copynumber: 3.8 Consensus size: 81
80805173 AGGGGTAAAA
* * *
80805183 TGGTAATTT-TACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCT
1 TGGT-ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCT
*
80805247 ACCCTACAAGGGTATTT
65 ACCCTACAGGGGTATTT
* * * *
80805264 CGGTATTTCTATCCTACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTA
1 TGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
80805329 CCCTACAGGGGTATTT
66 CCCTACAGGGGTATTT
* * *
80805345 TGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTCGGTAATTCTA
1 TGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
*
80805410 CCCTACAGGGGTTTTT
66 CCCTACAGGGGTATTT
* * * * *
80805426 TAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTTAGTAATT
1 TGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATT
80805488 TTGTAAATCG
Statistics
Matches: 199, Mismatches: 24, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
80 4 0.02
81 195 0.98
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (81 bp):
TGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
CCCTACAGGGGTATTT
Found at i:80805487 original size:27 final size:27
Alignment explanation
Indices: 80805184--80805479 Score: 394
Period size: 27 Copynumber: 11.0 Consensus size: 27
80805174 GGGGTAAAAT
* * * *
80805184 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80805211 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80805238 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
80805265 GGTATTTCTATCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80805292 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80805319 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80805346 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80805373 GGTAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80805400 GGTAATTCTACCCTACAGGGGTTTTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80805427 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80805454 GGTAATTCTACCTTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
80805480 TAGTAATTTT
Statistics
Matches: 238, Mismatches: 31, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 238 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:80805556 original size:27 final size:27
Alignment explanation
Indices: 80805536--80805623 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 27
80805526 GGGTACTTTG
80805536 GTAATTTTACAAGTCGAGGGTATTTCA
1 GTAATTTTACAAGTCGAGGGTATTTCA
*
80805563 ATAATTTTACAAGTCGAGGGTATTTCA
1 GTAATTTTACAAGTCGAGGGTATTTCA
* * *
80805590 GTAATTTTACAA-ACCAGGGGTATTTTA
1 GTAATTTTACAAGTCGA-GGGTATTTCA
80805617 GTAATTT
1 GTAATTT
80805624 GGTAAACTAA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAGTCGAGGGTATTTCA
Found at i:80812239 original size:30 final size:30
Alignment explanation
Indices: 80812205--80812265 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
80812195 TCCTTAACTC
80812205 AAAC-TTTGACAAAATTACAATTTTGCCCCT
1 AAACTTTTG-CAAAATTACAATTTTGCCCCT
* * *
80812235 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
80812265 A
1 A
80812266 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 23 0.85
31 4 0.15
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:80822487 original size:16 final size:17
Alignment explanation
Indices: 80822468--80822503 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
80822458 CCTTAAACTT
*
80822468 TAAACCCTT-GAAACCC
1 TAAACCCTTAAAAACCC
80822484 TAAACCCTTAAAAACCC
1 TAAACCCTTAAAAACCC
80822501 TAA
1 TAA
80822504 CCTAAACCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.44, C:0.33, G:0.03, T:0.19
Consensus pattern (17 bp):
TAAACCCTTAAAAACCC
Found at i:80822510 original size:22 final size:23
Alignment explanation
Indices: 80822482--80822526 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
80822472 CCCTTGAAAC
80822482 CCTAAACCCTT-AA-AAACCCTAA
1 CCTAAA-CCTTAAACAAACCCTAA
80822504 CCTAAACCTTAAACAAACCCTAA
1 CCTAAACCTTAAACAAACCCTAA
80822527 AAACAAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 9 0.43
ACGTcount: A:0.47, C:0.36, G:0.00, T:0.18
Consensus pattern (23 bp):
CCTAAACCTTAAACAAACCCTAA
Found at i:80823509 original size:20 final size:21
Alignment explanation
Indices: 80823462--80823509 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
80823452 AAAAGATAAA
80823462 TTAAAATTGCATAATTCTTTG
1 TTAAAATTGCATAATTCTTTG
80823483 TTAAAATTGCATAATTCTTTG
1 TTAAAATTGCATAATTCTTTG
80823504 -TAAAAT
1 TTAAAAT
80823510 ATATATTAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 6 0.22
21 21 0.78
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (21 bp):
TTAAAATTGCATAATTCTTTG
Found at i:80823828 original size:40 final size:39
Alignment explanation
Indices: 80823784--80823861 Score: 95
Period size: 40 Copynumber: 2.0 Consensus size: 39
80823774 TATATTTTGA
* * *
80823784 ATATTTATTTAATAT-TTAAAAAGTATGCATTACATTTTTT
1 ATATTTAATT-ATATCTGAAAAAATATGCATTAC-TTTTTT
*
80823824 ATATTTAATTATATCTGAAAAAATATGTATTACTTTTT
1 ATATTTAATTATATCTGAAAAAATATGCATTACTTTTT
80823862 CTCAGTGTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
39 9 0.27
40 24 0.73
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.51
Consensus pattern (39 bp):
ATATTTAATTATATCTGAAAAAATATGCATTACTTTTTT
Found at i:80824987 original size:18 final size:18
Alignment explanation
Indices: 80824964--80825002 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
80824954 AAAATGTAAC
80824964 ATTTTTAAATA-AATATTT
1 ATTTTTAAATACAAT-TTT
80824982 ATTTTTAAATACAATTTT
1 ATTTTTAAATACAATTTT
80825000 ATT
1 ATT
80825003 CTTTGATGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTTTTAAATACAATTTT
Found at i:80832011 original size:17 final size:18
Alignment explanation
Indices: 80831975--80832012 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
80831965 TTTTTTCTTT
**
80831975 CCTCTCCATATTGTTGTC
1 CCTCTCCATATTGTCCTC
80831993 CCTCTCCAT-TTGTCCTC
1 CCTCTCCATATTGTCCTC
80832010 CCT
1 CCT
80832013 TTTCTCTCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.08, C:0.42, G:0.08, T:0.42
Consensus pattern (18 bp):
CCTCTCCATATTGTCCTC
Found at i:80833444 original size:45 final size:44
Alignment explanation
Indices: 80833370--80833487 Score: 121
Period size: 45 Copynumber: 2.7 Consensus size: 44
80833360 TACAAAATTG
* * *
80833370 ATGGTTTATCCACAACCTACATGGCAGCTTGTCTGTGAATATTA
1 ATGGTTTATCCACAAACTACATGGAAGCTTATCTGTGAATATTA
* * *
80833414 ATGGTTTTGTCCACAAACTATATGGAAGCTTATCTGTGAAT-TTG
1 ATGG-TTTATCCACAAACTACATGGAAGCTTATCTGTGAATATTA
* * * * *
80833458 GTGGTTTATTCACAACCTAAATGGTAGCTT
1 ATGGTTTATCCACAAACTACATGGAAGCTT
80833488 GTTTGCAAAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
43 21 0.34
44 9 0.15
45 31 0.51
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.36
Consensus pattern (44 bp):
ATGGTTTATCCACAAACTACATGGAAGCTTATCTGTGAATATTA
Found at i:80834368 original size:11 final size:11
Alignment explanation
Indices: 80834352--80834378 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
80834342 ATAAAATGGG
80834352 AAAATAAGCCA
1 AAAATAAGCCA
80834363 AAAATAAGCCA
1 AAAATAAGCCA
80834374 AAAAT
1 AAAAT
80834379 TAGCTCATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.67, C:0.15, G:0.07, T:0.11
Consensus pattern (11 bp):
AAAATAAGCCA
Found at i:80837323 original size:11 final size:12
Alignment explanation
Indices: 80837297--80837325 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
80837287 TCTGCATGTA
80837297 TATTTTAAAGAG
1 TATTTTAAAGAG
80837309 TATTTTAAA-AG
1 TATTTTAAAGAG
80837320 TATTTT
1 TATTTT
80837326 GCTATTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 8 0.47
12 9 0.53
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (12 bp):
TATTTTAAAGAG
Found at i:80837417 original size:15 final size:15
Alignment explanation
Indices: 80837397--80837429 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
80837387 TCTCTATACT
*
80837397 TGAAACTTTAGATTA
1 TGAAACCTTAGATTA
80837412 TGAAACCTTAGATTA
1 TGAAACCTTAGATTA
80837427 TGA
1 TGA
80837430 GATGATATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.36
Consensus pattern (15 bp):
TGAAACCTTAGATTA
Found at i:80837856 original size:34 final size:34
Alignment explanation
Indices: 80837816--80837882 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
80837806 GAGAGAAAGG
80837816 AAAAAATAAAGTACAAAATAAGAGGGAGTCTAGA
1 AAAAAATAAAGTACAAAATAAGAGGGAGTCTAGA
80837850 AAAAAATAAAGTACAAAATAAGAGGGAGTCTAG
1 AAAAAATAAAGTACAAAATAAGAGGGAGTCTAG
80837883 TTATACTAGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.58, C:0.06, G:0.21, T:0.15
Consensus pattern (34 bp):
AAAAAATAAAGTACAAAATAAGAGGGAGTCTAGA
Found at i:80850929 original size:15 final size:15
Alignment explanation
Indices: 80850905--80850934 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
80850895 ATTAATTTTT
*
80850905 TAAATGTTCAAAATA
1 TAAATATTCAAAATA
80850920 TAAATATTCAAAATA
1 TAAATATTCAAAATA
80850935 ATAATTATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (15 bp):
TAAATATTCAAAATA
Found at i:80856348 original size:40 final size:39
Alignment explanation
Indices: 80856304--80856385 Score: 110
Period size: 39 Copynumber: 2.1 Consensus size: 39
80856294 CAATCACTAC
* *
80856304 CACAAAGCATGCAGGACTTTAAGCCCGGATACAATACCAG
1 CACAAACCATGCAGGACTTT-AGCCCGGATACAACACCAG
* * *
80856344 CACAAACCCTGCGGGACTTTAGCCCGGATATAACACCAG
1 CACAAACCATGCAGGACTTTAGCCCGGATACAACACCAG
80856383 CAC
1 CAC
80856386 GAATGCCTTC
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 20 0.54
40 17 0.46
ACGTcount: A:0.34, C:0.32, G:0.20, T:0.15
Consensus pattern (39 bp):
CACAAACCATGCAGGACTTTAGCCCGGATACAACACCAG
Found at i:80856382 original size:39 final size:38
Alignment explanation
Indices: 80856325--80856528 Score: 219
Period size: 39 Copynumber: 5.5 Consensus size: 38
80856315 CAGGACTTTA
* * ** *
80856325 AGCCCGGATACAATACCAGCACAAACCCTGCGGGACTTT
1 AGCCCGGATATAACACCAGCACAATGCCTTCGGGAC-TT
80856364 AGCCCGGATATAACACCAGCACGAATGCCTTC-GG----
1 AGCCCGGATATAACACCAGCAC-AATGCCTTCGGGACTT
*
80856398 -G---GAATATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCAC-AATGCCTTCGGGACTT
* *
80856433 AGCCCGGATATAACACCAGCATGAATGCCTTCAGGACTT
1 AGCCCGGATATAACACCAGCA-CAATGCCTTCGGGACTT
*
80856472 AGCCCGGATATAACACCAACACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCAC-AATGCCTTCGGGACTT
80856511 AGCCCGGATATAACACCA
1 AGCCCGGATATAACACCA
80856529 TTATAAAGTC
Statistics
Matches: 141, Mismatches: 12, Indels: 24
0.80 0.07 0.14
Matches are distributed among these distances:
30 26 0.18
31 2 0.01
33 1 0.01
36 1 0.01
39 105 0.74
40 6 0.04
ACGTcount: A:0.31, C:0.30, G:0.21, T:0.17
Consensus pattern (38 bp):
AGCCCGGATATAACACCAGCACAATGCCTTCGGGACTT
Found at i:80856407 original size:30 final size:30
Alignment explanation
Indices: 80856371--80856428 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
80856361 TTTAGCCCGG
80856371 ATATAACACCAGCACGAATGCCTTCGGGGA
1 ATATAACACCAGCACGAATGCCTTCGGGGA
80856401 ATATAACACCAGCACGAATGCCTTCGGG
1 ATATAACACCAGCACGAATGCCTTCGGG
80856429 ACTTAGCCCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.33, C:0.28, G:0.22, T:0.17
Consensus pattern (30 bp):
ATATAACACCAGCACGAATGCCTTCGGGGA
Found at i:80856634 original size:28 final size:28
Alignment explanation
Indices: 80856601--80856677 Score: 93
Period size: 28 Copynumber: 2.8 Consensus size: 28
80856591 ATTTAATCAT
*
80856601 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTTGCACACTAAGTGCCATTC
* *
80856629 TCAATATCTCT-CACATTAAGTGCCATTC
1 TCAATAT-TTTGCACACTAAGTGCCATTC
* *
80856657 TCAATATTTCGTACACTAAGT
1 TCAATATTTTGCACACTAAGT
80856678 ACTATATTTG
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
27 1 0.03
28 37 0.93
29 2 0.05
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (28 bp):
TCAATATTTTGCACACTAAGTGCCATTC
Found at i:80858104 original size:21 final size:21
Alignment explanation
Indices: 80858047--80858089 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
80858037 GAAGTAAGTT
80858047 TGTGCAACTTGAATTGAATTA
1 TGTGCAACTTGAATTGAATTA
80858068 TGTGCAACTTGAATTGAATTA
1 TGTGCAACTTGAATTGAATTA
80858089 T
1 T
80858090 TGAATGTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (21 bp):
TGTGCAACTTGAATTGAATTA
Found at i:80858501 original size:10 final size:10
Alignment explanation
Indices: 80858486--80858515 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
80858476 AATACATCTC
80858486 TTTTTTTTTA
1 TTTTTTTTTA
80858496 TTTTTTTTTA
1 TTTTTTTTTA
*
80858506 TTTATTTTTA
1 TTTTTTTTTA
80858516 CTTAAGAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:80860483 original size:5 final size:6
Alignment explanation
Indices: 80860463--80860506 Score: 52
Period size: 6 Copynumber: 6.8 Consensus size: 6
80860453 CAATGTAATC
*
80860463 AAAATA AAAACA AAAATA AAAATA AAAATGGAA AAAATA AAAAT
1 AAAATA AAAATA AAAATA AAAATA AAAAT---A AAAATA AAAAT
80860507 TAGGTTACCT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
6 27 0.82
9 6 0.18
ACGTcount: A:0.80, C:0.02, G:0.05, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:80866879 original size:10 final size:10
Alignment explanation
Indices: 80866821--80866870 Score: 73
Period size: 10 Copynumber: 5.0 Consensus size: 10
80866811 TTAAATTCTA
80866821 AAAGATAAAT
1 AAAGATAAAT
*
80866831 ACAGATAAAT
1 AAAGATAAAT
**
80866841 AAAGATATTT
1 AAAGATAAAT
80866851 AAAGATAAAT
1 AAAGATAAAT
80866861 AAAGATAAAT
1 AAAGATAAAT
80866871 GGAGATAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 34 1.00
ACGTcount: A:0.64, C:0.02, G:0.10, T:0.24
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:80867845 original size:9 final size:9
Alignment explanation
Indices: 80867828--80867873 Score: 83
Period size: 9 Copynumber: 5.1 Consensus size: 9
80867818 TGAGTTTTCG
80867828 AATTCGAAT
1 AATTCGAAT
*
80867837 AACTCGAAT
1 AATTCGAAT
80867846 AATTCGAAT
1 AATTCGAAT
80867855 AATTCGAAT
1 AATTCGAAT
80867864 AATTCGAAT
1 AATTCGAAT
80867873 A
1 A
80867874 TCAAACTATA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.46, C:0.13, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:80870414 original size:33 final size:33
Alignment explanation
Indices: 80870377--80870452 Score: 134
Period size: 33 Copynumber: 2.3 Consensus size: 33
80870367 ACAAACATAC
*
80870377 AAAGTAATAATTAAATAATGCATGATATACAAA
1 AAAGTAATAATTAAATAATGCATGACATACAAA
80870410 AAAGTAATAATTAAATAATGCATGACATACAAA
1 AAAGTAATAATTAAATAATGCATGACATACAAA
80870443 AAGAGTAATA
1 AA-AGTAATA
80870453 CAATATCAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
33 34 0.83
34 7 0.17
ACGTcount: A:0.58, C:0.07, G:0.11, T:0.25
Consensus pattern (33 bp):
AAAGTAATAATTAAATAATGCATGACATACAAA
Found at i:80873436 original size:26 final size:26
Alignment explanation
Indices: 80873405--80873512 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
80873395 TGAAATGCCC
*
80873405 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
80873431 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
80873457 ATCATGAAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
80873483 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
80873509 ATCA
1 ATCA
80873513 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:80873926 original size:8 final size:8
Alignment explanation
Indices: 80873913--80873937 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
80873903 AATATAATTT
80873913 AATTTTAA
1 AATTTTAA
80873921 AATTTTAA
1 AATTTTAA
80873929 AATTTTAA
1 AATTTTAA
80873937 A
1 A
80873938 TAATATAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
AATTTTAA
Found at i:80874208 original size:22 final size:21
Alignment explanation
Indices: 80874178--80874233 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
80874168 ATATAATAAT
*
80874178 ATAAAAATAATGATG-GAAAATA
1 ATAATAATAAT-ATGTGAAAA-A
*
80874200 ATAATAATAATTTGTGAAAAA
1 ATAATAATAATATGTGAAAAA
80874221 ATAATATATAATA
1 ATAATA-ATAATA
80874234 AATAATAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 9 0.31
22 20 0.69
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (21 bp):
ATAATAATAATATGTGAAAAA
Found at i:80874248 original size:19 final size:19
Alignment explanation
Indices: 80874129--80874259 Score: 71
Period size: 19 Copynumber: 6.9 Consensus size: 19
80874119 TAAGACCAAT
*
80874129 ATATATATAAATAATTAATA
1 ATATATAT-AATAAATAATA
80874149 A-ATATATAATGCAAATAA-A
1 ATATATATAAT--AAATAATA
*
80874168 ATATA-ATAATATAAAAATA
1 ATATATATAATA-AATAATA
** *
80874187 ATGATGGAAAAT-AATAATA
1 AT-ATATATAATAAATAATA
** *
80874206 ATA-AT-TTGTGAA-AA-A
1 ATATATATAATAAATAATA
80874221 ATAATATATAATAAATAATA
1 AT-ATATATAATAAATAATA
80874241 ATATATATAATAAAATAAT
1 ATATATATAAT-AAATAAT
80874260 CTTATAATGT
Statistics
Matches: 84, Mismatches: 13, Indels: 28
0.67 0.10 0.22
Matches are distributed among these distances:
15 3 0.04
16 4 0.05
17 5 0.06
18 12 0.14
19 35 0.42
20 21 0.25
21 4 0.05
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.33
Consensus pattern (19 bp):
ATATATATAATAAATAATA
Found at i:80876239 original size:205 final size:206
Alignment explanation
Indices: 80875876--80876297 Score: 641
Period size: 205 Copynumber: 2.1 Consensus size: 206
80875866 CGAATCTGCT
* * *
80875876 TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTCTAATC
1 TCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCTTGCTTCAGTCTAAAC
* *
80875941 GTCTGAAGGTCAGATCTACTGTGTATCTGCTCTCTATTGAAGTGGAGATGCCAGACTTCGATTTG
66 ATCTGAAGGTCAGATCTACTGTGTATCTGCTCTCTATTGAAGTGGAGATGCCAGACTTCAATTTG
* ** * * *
80876006 CTCTTTGCCAATACAGAGATGCCAAATCATCTTAGATTTTCTTCATCATAAACACATGAAAGCTA
131 CTCTCTAACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCATAAACACATGAAAGCCA
80876071 AATCAGCTATG
196 AATCAGCTATG
*
80876082 TCTTCAATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATC-TGCTTCAG-CATAAA
1 TCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCTTGCTTCAGTC-TAAA
* *
80876145 CATCTGAAGGTGAGATCTGCTGTGTATCTGCTCTCTATTGAAGTGGAGATGCCAGACTTCAATTT
65 CATCTGAAGGTCAGATCTACTGTGTATCTGCTCTCTATTGAAGTGGAGATGCCAGACTTCAATTT
* * * **
80876210 GTTCTCTAACAATACAGAGATGACAAATCATCTTAGATTTGCTTTATCGTAAACATGTGAAAGCC
130 GCTCTCTAACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCATAAACACATGAAAGCC
*
80876275 AAATTAGCTATG
195 AAATCAGCTATG
80876287 TCTTCGATTTG
1 TCTTCGATTTG
80876298 CTCTTCGCCA
Statistics
Matches: 194, Mismatches: 21, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
204 1 0.01
205 147 0.76
206 46 0.24
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.33
Consensus pattern (206 bp):
TCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCTTGCTTCAGTCTAAAC
ATCTGAAGGTCAGATCTACTGTGTATCTGCTCTCTATTGAAGTGGAGATGCCAGACTTCAATTTG
CTCTCTAACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCATAAACACATGAAAGCCA
AATCAGCTATG
Found at i:80877385 original size:5 final size:5
Alignment explanation
Indices: 80877375--80877399 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
80877365 ACCTCTCCAA
80877375 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
80877400 TAAAATCTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:80885554 original size:16 final size:16
Alignment explanation
Indices: 80885533--80885570 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
80885523 TTACTAACCT
80885533 TCCTCTTGTAATCGAC
1 TCCTCTTGTAATCGAC
80885549 TCCTCTTGTAATCGAC
1 TCCTCTTGTAATCGAC
80885565 TCCTCT
1 TCCTCT
80885571 GTATACGAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.16, C:0.34, G:0.11, T:0.39
Consensus pattern (16 bp):
TCCTCTTGTAATCGAC
Found at i:80888705 original size:23 final size:24
Alignment explanation
Indices: 80888679--80888740 Score: 69
Period size: 22 Copynumber: 2.8 Consensus size: 24
80888669 AATATAATAG
80888679 ATATAATATAA-AATAATGAAAAT
1 ATATAATATAAGAATAATGAAAAT
* *
80888702 ATAT-ATGTAAGAATAATGCAAAT
1 ATATAATATAAGAATAATGAAAAT
*
80888725 A-A-AATATAATAATAAT
1 ATATAATATAAGAATAAT
80888741 ATAAAAATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
22 17 0.52
23 16 0.48
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (24 bp):
ATATAATATAAGAATAATGAAAAT
Found at i:80888806 original size:20 final size:17
Alignment explanation
Indices: 80888779--80888823 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 17
80888769 ATTTGTGAAA
80888779 AAAATAATATATAATAAAT
1 AAAATAATATAT-AT-AAT
80888798 AATAATAATATATATAAT
1 AA-AATAATATATATAAT
80888816 AAAATAAT
1 AAAATAAT
80888824 CTTATAATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.24
18 5 0.20
19 4 0.16
20 10 0.40
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
AAAATAATATATATAAT
Found at i:80891936 original size:16 final size:16
Alignment explanation
Indices: 80891917--80891950 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
80891907 AAAAATAATT
* *
80891917 AAAATTTGAAATTTTA
1 AAAATTTAAAATTCTA
80891933 AAAATTTAAAATTCTA
1 AAAATTTAAAATTCTA
80891949 AA
1 AA
80891951 CTTAATTATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (16 bp):
AAAATTTAAAATTCTA
Found at i:80900385 original size:42 final size:43
Alignment explanation
Indices: 80900280--80900422 Score: 143
Period size: 43 Copynumber: 3.3 Consensus size: 43
80900270 TCTGAGATGT
* *
80900280 CATGTAAGACCGTGTCTGGGACACAGGC--CT-TGATTGAGATTTA
1 CATGTAAGACCATGTCTGGGACAGAGGCATCTAT-ATTGA-A-TTA
* * ** *
80900323 CGTATAAGACCATGTCTGGGACATTGGCATCGTAT-TTG-ATTT
1 CATGTAAGACCATGTCTGGGACAGAGGCATC-TATATTGAATTA
*
80900365 CATGTAAGACCTTGTCTGGGACAGAGGCATCTATATTGAATTA
1 CATGTAAGACCATGTCTGGGACAGAGGCATCTATATTGAATTA
80900408 CATGTAAGACCATGT
1 CATGTAAGACCATGT
80900423 TCGGGACGTC
Statistics
Matches: 81, Mismatches: 13, Indels: 12
0.76 0.12 0.11
Matches are distributed among these distances:
41 3 0.04
42 31 0.38
43 41 0.51
45 4 0.05
46 1 0.01
47 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (43 bp):
CATGTAAGACCATGTCTGGGACAGAGGCATCTATATTGAATTA
Found at i:80909452 original size:129 final size:128
Alignment explanation
Indices: 80909222--80909455 Score: 283
Period size: 130 Copynumber: 1.8 Consensus size: 128
80909212 ATTTTTTCAT
** * *
80909222 TTTAAAATTCGTACTTTGATTTTTAAAAGGATATTCAGTTGTTTAGATCCAACGAGGAAAATCGA
1 TTTAAAATTCGTACTTTGAAATTTAAAAGGATATTCAGCTATTTAGATCCAACGAGGAAAATCGA
* * *
80909287 AACCCCGTAAGTTAGGGCATGACCTTCTCAAGTTTCTAAACACGGAATATTGCCTTTATCTTA
66 AACCCCGCAAGTTAGGGCATCAACTTCTCAAGTTTCTAAACACGGAATATTGCCTTTATCTTA
* * * * *
80909350 TTTAAAATTCATGTATTTTGAAATTTGAAAGGATATTCGGCTATTTAGGTTCAACGA-GAAAATC
1 TTTAAAATTC--GTACTTTGAAATTTAAAAGGATATTCAGCTATTTAGATCCAACGAGGAAAATC
* * * *
80909414 GAGACCCCGCAAGTTAGGGTA-CAATTTCTCGAATTTTCTAAA
64 GAAACCCCGCAAGTTAGGGCATCAACTTCTC-AAGTTTCTAAA
80909456 TGCGAAACAT
Statistics
Matches: 87, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
128 16 0.18
129 35 0.40
130 36 0.41
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (128 bp):
TTTAAAATTCGTACTTTGAAATTTAAAAGGATATTCAGCTATTTAGATCCAACGAGGAAAATCGA
AACCCCGCAAGTTAGGGCATCAACTTCTCAAGTTTCTAAACACGGAATATTGCCTTTATCTTA
Found at i:80909468 original size:129 final size:128
Alignment explanation
Indices: 80909222--80909471 Score: 279
Period size: 129 Copynumber: 1.9 Consensus size: 128
80909212 ATTTTTTCAT
** * *
80909222 TTTAAAATTCGTACTTTGATTTTTAAAAGGATATTCAGTTGTTTAGATCCAACGAGGAAAATCGA
1 TTTAAAATTCGTACTTTGAAATTTAAAAGGATATTCAGCTATTTAGATCCAACGAGGAAAATCGA
* * * * *
80909287 AACCCCGTAAGTTAGGGCATGACCTTCTCAAGTTTCTAAACACGGAATATTGCCTTTATCTTA
66 AACCCCGCAAGTTAGGGCATCAACTTCTCAAGTTTCTAAACACGAAACATTGCCTTTATCTTA
* * * * *
80909350 TTTAAAATTCATGTATTTTGAAATTTGAAAGGATATTCGGCTATTTAGGTTCAACGA-GAAAATC
1 TTTAAAATTC--GTACTTTGAAATTTAAAAGGATATTCAGCTATTTAGATCCAACGAGGAAAATC
* * * * **
80909414 GAGACCCCGCAAGTTAGGGTA-CAATTTCTCGAATTTTCTAAATGCGAAACATTGCCTT
64 GAAACCCCGCAAGTTAGGGCATCAACTTCTC-AAGTTTCTAAACACGAAACATTGCCTT
80909472 ATTATTGAAA
Statistics
Matches: 99, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
128 16 0.16
129 47 0.47
130 36 0.36
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34
Consensus pattern (128 bp):
TTTAAAATTCGTACTTTGAAATTTAAAAGGATATTCAGCTATTTAGATCCAACGAGGAAAATCGA
AACCCCGCAAGTTAGGGCATCAACTTCTCAAGTTTCTAAACACGAAACATTGCCTTTATCTTA
Found at i:80909694 original size:3 final size:3
Alignment explanation
Indices: 80909686--80909771 Score: 113
Period size: 3 Copynumber: 28.7 Consensus size: 3
80909676 TAGTAACATG
80909686 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
80909734 AAT AAC AA- AAA AGAT AAT AA- AAGT GAT AAT AAT AAT AA
1 AAT AAT AAT AAT A-AT AAT AAT AA-T AAT AAT AAT AAT AA
80909772 AATCTAGATT
Statistics
Matches: 75, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
2 4 0.05
3 68 0.91
4 3 0.04
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:80911605 original size:21 final size:21
Alignment explanation
Indices: 80911563--80911606 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 21
80911553 GATTTTGAAT
80911563 TAATTCAAATTTATTGTTTGGA
1 TAATTCAAATTTA-TGTTTGGA
80911585 TAATTCAAATTTA-GATTTGGA
1 TAATTCAAATTTATG-TTTGGA
80911606 T
1 T
80911607 TTCAACTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 1 0.05
21 7 0.33
22 13 0.62
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.48
Consensus pattern (21 bp):
TAATTCAAATTTATGTTTGGA
Found at i:80919318 original size:16 final size:16
Alignment explanation
Indices: 80919297--80919366 Score: 113
Period size: 16 Copynumber: 4.4 Consensus size: 16
80919287 AAGAAATTAA
*
80919297 GCCACCAGCGAGTGCT
1 GCCACCAGCAAGTGCT
80919313 GCCACCAGCAAGTGCT
1 GCCACCAGCAAGTGCT
*
80919329 GCCACCAGCTAGTGCT
1 GCCACCAGCAAGTGCT
*
80919345 GCCACCAGCCAGTGCT
1 GCCACCAGCAAGTGCT
80919361 GCCACC
1 GCCACC
80919367 TCCGAATCCC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.20, C:0.41, G:0.26, T:0.13
Consensus pattern (16 bp):
GCCACCAGCAAGTGCT
Found at i:80921953 original size:3 final size:3
Alignment explanation
Indices: 80921885--80921935 Score: 75
Period size: 3 Copynumber: 17.0 Consensus size: 3
80921875 ACAACTTAAG
* * *
80921885 AAT AAC AAT AAC AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
80921933 AAT
1 AAT
80921936 GGTGACAGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:80922010 original size:21 final size:18
Alignment explanation
Indices: 80921984--80922028 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 18
80921974 TTTTAAAATT
80921984 ATAAAAGGATATAAATGAATA
1 ATAAAAGGATA-AAAT-AA-A
*
80922005 ATAAAATGATAAAATAAA
1 ATAAAAGGATAAAATAAA
80922023 ATAAAA
1 ATAAAA
80922029 TAAATATTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 7 0.30
19 2 0.09
20 4 0.17
21 10 0.43
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.22
Consensus pattern (18 bp):
ATAAAAGGATAAAATAAA
Found at i:80923819 original size:45 final size:44
Alignment explanation
Indices: 80923726--80924598 Score: 444
Period size: 44 Copynumber: 19.7 Consensus size: 44
80923716 TGTTTATTTT
* * ***
80923726 TGCTCCACTGCAACTTTAGGG-G-TAAGGTTTGTGGCTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAATC
* *
80923768 TGCTCCACTACAACTTCAGGGAGATAAGATTTGTCATTTTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-ATTTTCAATC
* * * * * * ** *
80923813 CGCTCCACTGTAACTTCAGGGATATAAAACTTATAACTTCAACC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAATC
* * * * *
80923857 TGCTCCATTGTAACTTCAGGGAAATAAGATTCGTAGTTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAATC
* * * *
80923901 TGCTCCACTGCAACTTTAGGGAGATAATATTTATAACTTT-AATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-ATTTTCAATC
* * *
80923945 TGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTCGATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATTTTCAATC
* * * * **
80923990 TACTCCACTGCAACTTCAGAGAGATAAGATCTATAACTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAATC
* * ** * *
80924034 TGTTCTAC-G--A--T-A---AGATTTGTAATTTATAACTTT-AATC
1 TGCTCCACTGCAACTTCAGGGAGATAAG--ATTTGT-ATTTTCAATC
* * *
80924071 TG-TCCTACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATC
1 TGCTCC-ACTGCAACTTCAGGGAGATAAGATTTG-TATTTTCAATC
* * * ** *
80924116 TACTCCACTGCAACTTCAGGGAGATAAGATCTATAACTTCAATA
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAATC
* * *
80924160 TGCACCACTGCAACTTCAGTGAGATAAGATTTGTAATTTATAGCTTTAATT
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-ATTT-T--C---AATC
* * *
80924211 TGTTCCACTGC-A----AGGGAAATAAGATTTGTTATCTTT-GATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAT-TTTCAATC
* ** * * * * **
80924251 TACTCCACTATAACTTCAAGTAGATAAGATCTATAACTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAATC
* * * *
80924295 TGTTCCACTGCAACTTTAGGGATATAAGATTTGTAATTTATAGTTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTG-----TAT--TTTCAATC
* * * ** * *
80924346 TGTTCCACTGCAACTTCAGGGAAATAGGATTCACTATCTTCGATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATT-TGTATTTTCAATC
* * *
80924391 TACTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTT-AATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-ATTTTCAATC
* * * * *
80924435 TACTCCACTACAAC-TCTAAGAAGATAAGATTTGTAGTTTT-AATA
1 TGCTCCACTGCAACTTC-AGGGAGATAAGATTTGTA-TTTTCAATC
* * * * * * *
80924479 TGCTCTACTGCAACTTTAGAGAGATAGGATTTGCTATCTTCGACC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATTTTCAATC
* * * * *
80924524 TTCTCCACTGCAAATTCAAGGAGATAAGGTTTGTAGCTTT-AATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA-TTTTCAATC
*
80924568 TGCTCCACTGCAACTTCAAGGAGATAAGATT
1 TGCTCCACTGCAACTTCAGGGAGATAAGATT
80924599 CACCATAATA
Statistics
Matches: 619, Mismatches: 160, Indels: 102
0.70 0.18 0.12
Matches are distributed among these distances:
35 5 0.01
36 2 0.00
37 13 0.02
38 5 0.01
39 1 0.00
40 10 0.02
41 2 0.00
42 20 0.03
43 8 0.01
44 293 0.47
45 179 0.29
46 25 0.04
47 6 0.01
48 1 0.00
49 2 0.00
50 1 0.00
51 46 0.07
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.34
Consensus pattern (44 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAATC
Found at i:80923872 original size:89 final size:87
Alignment explanation
Indices: 80923760--80924598 Score: 363
Period size: 89 Copynumber: 9.4 Consensus size: 87
80923750 AGGTTTGTGG
* * *
80923760 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGTCATTTTCAGTCCGCTCCACTGTA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-ATTTTCAGTCTGCTCCACTGCA
*
80923825 ACTTCAGGGATATAAAACTTATAA
65 ACTTCAGGGAGATAAAA-TTATAA
* * * * * * *
80923849 CTTCAACCTGCTCCATTGTAACTTCAGGGAAATAAGATTCGTAGTTTCAATCTGCTCCACTGCAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAGTCTGCTCCACTGCAA
* *
80923914 CTTTAGGGAGATAATATTTATAA
66 CTTCAGGGAGATAA-AATTATAA
* * * *
80923937 CTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTC-GATCTACTCCACTGC
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATTTTCAG-TCTGCTCCACTGC
* *
80924001 AACTTCAGAGAGATAAGATCTATAA
64 AACTTCAGGGAGATAAAAT-TATAA
* * ** * * *
80924026 CTTCAATCTGTTCTAC-G--A--T-A---AGATTTGTAATTTATAACTTT-AATCTG-TCCTACT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG--ATTTGT-ATTTTCAGTCTGCTCC-ACT
* * * *
80924080 GCAACTTCAGGGAAATAAGATTTGTTAT
62 GCAACTTCAGGGAGATAA-AATT-ATAA
* * * * ** * * *
80924108 CTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCTATAACTTCAATATGCACCACTGCAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAGTCTGCTCCACTGCAA
* *
80924173 CTTCAGTGAGATAAGATTTGTAATTTATAG
66 CTTCAGGGAGAT-A-A-----AA-TTATAA
* * * * * * **
80924203 CTTTAATTTGTTCCACTGC-A----AGGGAAATAAGATTTGTTATCTTTGA-TCTACTCCACTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAT-TTTCAGTCTGCTCCACTGC
* * *
80924262 AACTTCAAGTAGATAAGATCTATAA
64 AACTTCAGGGAGATAAAAT-TATAA
* * * *
80924287 CTTCAATCTGTTCCACTGCAACTTTAGGGATATAAGATTTGTAATTTAT-AGTTTTAATCTGTTC
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-ATTT-TCAG------TCTGCTC
* ** *
80924351 CACTGCAACTTCAGGGAAATAGGATTCACTAT
58 CACTGCAACTTCAGGGAGATAAAATT-A-TAA
* * * * * * *
80924383 CTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTT-AATCTACTCCACTACA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-ATTTTCAGTCTGCTCCACTGCA
* * * * *
80924447 AC-TCTAAGAAGATAAGATTTGTAG
65 ACTTC-AGGGAGATAA-AATTATAA
* * * * * * * * * *
80924471 TTTTAATATGCTCTACTGCAACTTTAGAGAGATAGGATTTGCTATCTTC-GACCTTCTCCACTGC
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATTTTCAG-TCTGCTCCACTGC
* * ** * *
80924535 AAATTCAAGGAGATAAGGTTTGTAG
64 AACTTCAGGGAGATAA-AATTATAA
* *
80924560 CTTTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
80924599 CACCATAATA
Statistics
Matches: 557, Mismatches: 139, Indels: 108
0.69 0.17 0.13
Matches are distributed among these distances:
80 8 0.01
81 24 0.04
82 22 0.04
83 3 0.01
84 23 0.04
85 2 0.00
86 1 0.00
87 1 0.00
88 119 0.21
89 213 0.38
90 21 0.04
91 27 0.05
92 3 0.01
94 2 0.00
95 44 0.08
96 44 0.08
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (87 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAGTCTGCTCCACTGCAA
CTTCAGGGAGATAAAATTATAA
Found at i:80924005 original size:133 final size:134
Alignment explanation
Indices: 80923760--80924594 Score: 666
Period size: 133 Copynumber: 6.3 Consensus size: 134
80923750 AGGTTTGTGG
* * * * * * * * *
80923760 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAA-GATTTGTCATTTTCAGTCCGCTCCACTGT
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAATAATTTATAACTTT-AATCTGCTCCACTGC
* * * * * * * * * * *
80923824 AACTTCAGGGATATAAAACTT-ATAACTTCAACCTGCTCCATTGTAACTTCAGGGAAATAAGAT-
65 AACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATC
* *
80923887 TCGTAG
130 T-ATAA
*
80923893 TTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAT-ATTTATAACTTTAATCTGCTCCACTGCA
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAATAATTTATAACTTTAATCTGCTCCACTGCA
* * *
80923957 ACTTCAGAGAGATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGAGAGATAAGATCT
66 ACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCT
80924022 ATAA
131 ATAA
* * **
80924026 CTTCAATCTGTTCTAC-G--A---TA---AGATTTGTAATTTATAACTTTAATCTG-TCCTACTG
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGA-TAATAATTTATAACTTTAATCTGCTCC-ACTG
80924081 CAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGAT
64 CAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGAT
80924146 CTATAA
129 CTATAA
* * * * * * *
80924152 CTTCAATATGCACCACTGCAACTTCAGTGAGATAAGATTTGTAATTTATAGCTTTAATTTGTTCC
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGAT-A-A----TAATTTATAACTTTAATCTGCTCC
* ** * *
80924217 ACTGC-A----AGGGAAATAAGATTTGTTATCTTTGATCTACTCCACTATAACTTCAAGTAGATA
60 ACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATA
80924277 AGATCTATAA
125 AGATCTATAA
* * ** *
80924287 CTTCAATCTGTTCCACTGCAACTTTAGGGATATAAGATTTGTAATTTATAGTTTTAATCTGTTCC
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGAT-A-A----TAATTTATAACTTTAATCTGCTCC
* ***
80924352 ACTGCAACTTCAGGGAAATAGGATTCACTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATA
60 ACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATA
*
80924417 AGATTTATAA
125 AGATCTATAA
* * * * * * * * ** * *
80924427 CTTTAATCTACTCCACTACAACTCTAAGAAGATAA-GATTTGTAGTTTTAATATGCTCTACTGCA
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAATAATTTATAACTTTAATCTGCTCCACTGCA
* * * * * * * * * * *
80924491 ACTTTAGAGAGATAGGATTTGCTATCTTCGACCTTCTCCACTGCAAATTCAAGGAGATAAGGTTT
66 ACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCT
* *
80924556 GTAG
131 ATAA
* * *
80924560 CTTTAATCTGCTCCACTGCAACTTCAAGGAGATAA
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
80924595 GATTCACCAT
Statistics
Matches: 581, Mismatches: 94, Indels: 54
0.80 0.13 0.07
Matches are distributed among these distances:
124 3 0.01
125 5 0.01
126 102 0.18
127 3 0.01
129 1 0.00
130 1 0.00
132 31 0.05
133 200 0.34
134 2 0.00
135 124 0.21
136 1 0.00
138 1 0.00
139 2 0.00
140 102 0.18
141 3 0.01
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (134 bp):
CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAATAATTTATAACTTTAATCTGCTCCACTGCA
ACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCT
ATAA
Found at i:80924098 original size:126 final size:127
Alignment explanation
Indices: 80923929--80924435 Score: 528
Period size: 135 Copynumber: 3.8 Consensus size: 127
80923919 GGGAGATAAT
* * *
80923929 ATTTATAACTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTCGATCTACT
1 ATTTATAACTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACT
80923994 CCACTGCAACTTCAGAGAGATAAGATCTATAACTTCAATCTGTTCT-ACGATAAGATTTGTA
66 CCACTGCAACTTCAGAGAGATAAGATCTATAACTTCAATCTGTTCTGACGATAAGATTTGTA
80924055 ATTTATAACTTTAATCTG-TCCTACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTAC
1 ATTTATAACTTTAATCTGTTCC-ACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTAC
*
80924119 TCCACTGCAACTTCAGGGAGATAAGATCTATAACTTCAATATGCACCACTGCAACTTCAGTGA-G
65 TCCACTGCAACTTCAGAGAGATAAGATCTATAACTTC-A-AT------CTG----TTC--TGACG
80924183 ATAAGATTTGTA
116 ATAAGATTTGTA
* * *
80924195 ATTTATAGCTTTAATTTGTTCCACTGC-A----AGGGAAATAAGATTTGTTATCTTTGATCTACT
1 ATTTATAACTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACT
**
80924255 CCACTATAACTTCA-AGTAGATAAGATCTATAACTTCAATCTGTTCCACTGCAACTTTAGGGATA
66 CCACTGCAACTTCAGAG-AGATAAGATCTATAACTTCAATCTGTT---CTG--AC------G--A
80924319 TAAGATTTGTA
117 TAAGATTTGTA
** * ***
80924330 ATTTATAGTTTTAATCTGTTCCACTGCAACTTCAGGGAAATAGGATTCACTATCTTCGATCTACT
1 ATTTATAACTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACT
* * *
80924395 CCACTGCAACTTCAGGGAGATAAGATTTATAACTTTAATCT
66 CCACTGCAACTTCAGAGAGATAAGATCTATAACTTCAATCT
80924436 ACTCCACTAC
Statistics
Matches: 322, Mismatches: 21, Indels: 62
0.80 0.05 0.15
Matches are distributed among these distances:
123 2 0.01
124 2 0.01
125 3 0.01
126 96 0.30
127 4 0.01
128 2 0.01
133 3 0.01
134 5 0.02
135 99 0.31
136 1 0.00
138 3 0.01
139 1 0.00
140 96 0.30
141 5 0.02
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (127 bp):
ATTTATAACTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACT
CCACTGCAACTTCAGAGAGATAAGATCTATAACTTCAATCTGTTCTGACGATAAGATTTGTA
Found at i:80924289 original size:135 final size:136
Alignment explanation
Indices: 80924042--80924598 Score: 558
Period size: 140 Copynumber: 4.1 Consensus size: 136
80924032 TCTGTTCTAC
*
80924042 GATAAGATTTGTAATTTATAACTTTAATCTG-TCCTACTGCAACTTCAGGGAAATAAGATTTGTT
1 GATAAGATTTGTAATTTATAGCTTTAATCTGTTCC-ACTGCAA---CAGGGAAATAAGATTTGTT
* *
80924106 ATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCTATAACTTCAATATGCACCACTGC
62 ATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCTATAACTTCAATCTGCTCCACTGC
*
80924171 AACTTCAGTGA
127 AACTTAAG-GA
*
80924182 GATAAGATTTGTAATTTATAGCTTTAATTTGTTCCACTGC-A-AGGGAAATAAGATTTGTTATCT
1 GATAAGATTTGTAATTTATAGCTTTAATCTGTTCCACTGCAACAGGGAAATAAGATTTGTTATCT
* ** * * *
80924245 TTGATCTACTCCACTATAACTTCAAGTAGATAAGATCTATAACTTCAATCTGTTCCACTGCAACT
66 TCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCTATAACTTCAATCTGCTCCACTGCAAC-
*
80924310 TTAGGGA
130 TTAAGGA
* * * ***
80924317 TATAAGATTTGTAATTTATAGTTTTAATCTGTTCCACTGCAACTTCAGGGAAATAGGATTCACTA
1 GATAAGATTTGTAATTTATAGCTTTAATCTGTTCCACTGCAA---CAGGGAAATAAGATTTGTTA
* * * *
80924382 TCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTTAATCTACTCCACTACA
63 TCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCTATAACTTCAATCTGCTCCACTGCA
*
80924447 ACTCTAAGAA
128 ACT-TAAGGA
* * * * * * * *
80924457 GATAAGATTTG-------TAGTTTTAATATGCTCTACTGCAACTTTAGAGAGATAGGATTTGCTA
1 GATAAGATTTGTAATTTATAGCTTTAATCTGTTCCACTGCAAC---AGGGAAATAAGATTTGTTA
* * * * * * * * *
80924515 TCTTCGACCTTCTCCACTGCAAATTCAAGGAGATAAGGTTTGTAGCTTTAATCTGCTCCACTGCA
63 TCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCTATAACTTCAATCTGCTCCACTGCA
80924580 ACTTCAAGGA
128 ACTT-AAGGA
80924590 GATAAGATT
1 GATAAGATT
80924599 CACCATAATA
Statistics
Matches: 356, Mismatches: 49, Indels: 31
0.82 0.11 0.07
Matches are distributed among these distances:
130 1 0.00
132 1 0.00
133 108 0.30
135 117 0.33
136 4 0.01
139 2 0.01
140 120 0.34
141 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.34
Consensus pattern (136 bp):
GATAAGATTTGTAATTTATAGCTTTAATCTGTTCCACTGCAACAGGGAAATAAGATTTGTTATCT
TCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCTATAACTTCAATCTGCTCCACTGCAACT
TAAGGA
Found at i:80929429 original size:17 final size:18
Alignment explanation
Indices: 80929407--80929445 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
80929397 TTAATCGTTC
**
80929407 TCTTCTCCTTTTCTTT-T
1 TCTTCTCCAATTCTTTCT
80929424 TCTTCTCCAATTCTTTCT
1 TCTTCTCCAATTCTTTCT
80929442 TCTT
1 TCTT
80929446 TTACTTCACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.05, C:0.31, G:0.00, T:0.64
Consensus pattern (18 bp):
TCTTCTCCAATTCTTTCT
Found at i:80936509 original size:21 final size:18
Alignment explanation
Indices: 80936483--80936527 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 18
80936473 TTTTAAAATT
80936483 ATAAAAGGATATAAATGAATA
1 ATAAAAGGATA-AAAT-AA-A
*
80936504 ATAAAATGATAAAATAAA
1 ATAAAAGGATAAAATAAA
80936522 ATAAAA
1 ATAAAA
80936528 TAAATATTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 7 0.30
19 2 0.09
20 4 0.17
21 10 0.43
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.22
Consensus pattern (18 bp):
ATAAAAGGATAAAATAAA
Found at i:80938904 original size:98 final size:98
Alignment explanation
Indices: 80938756--80938983 Score: 237
Period size: 98 Copynumber: 2.3 Consensus size: 98
80938746 CATCTAAGTG
* * ** * *
80938756 GATGCCATGTCCTAGATAGGTCTTACACT-GACTTCCATA-CATCGAGGCCGATGCCATGTCCCA
1 GATGCCATGTCCCAGACAGGTCTTACACTAG-CTTGTATATC-TTGAAGCCGATGCCATGTCCCA
* * * * * *
80938819 AATAGGTCTTACACTGGCTTTCA-CTTATCTGTGTA
64 AACAAGTCTTACACTAGCTCTCATC-TATCGGTGCA
* ** * *
80938854 GATGCCATGTTCCAGACAGGTCTTACACTAGCTTGTATATCTTGAAGCCGATTTCGTGTCCCAGA
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTTGAAGCCGATGCCATGTCCCAAA
*
80938919 CAAGTCTTACACTAGCTCTCATCTATCGGTGCC
66 CAAGTCTTACACTAGCTCTCATCTATCGGTGCA
*
80938952 GATGCCGTGTCCCAGACAGGTCTTACACTAGC
1 GATGCCATGTCCCAGACAGGTCTTACACTAGC
80938984 ACACACATCA
Statistics
Matches: 107, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
98 104 0.97
99 3 0.03
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (98 bp):
GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTTGAAGCCGATGCCATGTCCCAAA
CAAGTCTTACACTAGCTCTCATCTATCGGTGCA
Found at i:80938918 original size:49 final size:49
Alignment explanation
Indices: 80938731--80938983 Score: 155
Period size: 49 Copynumber: 5.2 Consensus size: 49
80938721 AAACATGGTA
* * ** * * *
80938731 TTACACTGGCTCTCA-C-ATCTAAGTGGATGCCATGTCCTAGATAGGTC
1 TTACACTAGCTCTCATCTATCGAAGCCGATGCCGTGTCCCAGACAGGTC
* * * *
80938778 TTACACT-GACT-TCCATAC-ATCGAGGCCGATGCCATGTCCCAAATAGGTC
1 TTACACTAG-CTCT-CAT-CTATCGAAGCCGATGCCGTGTCCCAGACAGGTC
* * * ** * *
80938827 TTACACTGGCTTTCA-CTTATCTG-TGTAGATGCCATGTTCCAGACAGGTC
1 TTACACTAGCTCTCATC-TATC-GAAGCCGATGCCGTGTCCCAGACAGGTC
* * ** *
80938876 TTACACTAGCT-T-GTATATCTTGAAGCCGATTTCGTGTCCCAGACAAGTC
1 TTACACTAGCTCTCATCTATC--GAAGCCGATGCCGTGTCCCAGACAGGTC
**
80938925 TTACACTAGCTCTCATCTATCGGTGCCGATGCCGTGTCCCAGACAGGTC
1 TTACACTAGCTCTCATCTATCGAAGCCGATGCCGTGTCCCAGACAGGTC
80938974 TTACACTAGC
1 TTACACTAGC
80938984 ACACACATCA
Statistics
Matches: 162, Mismatches: 30, Indels: 26
0.74 0.14 0.12
Matches are distributed among these distances:
46 2 0.01
47 16 0.10
48 3 0.02
49 132 0.81
50 4 0.02
51 5 0.03
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (49 bp):
TTACACTAGCTCTCATCTATCGAAGCCGATGCCGTGTCCCAGACAGGTC
Found at i:80939570 original size:21 final size:21
Alignment explanation
Indices: 80939546--80939588 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
80939536 AAGCTGTTTA
*
80939546 TTTAACAACCAAGATTCTTTT
1 TTTAACAACCAAGATTCCTTT
80939567 TTTAACAACCAAGATTCCTTT
1 TTTAACAACCAAGATTCCTTT
80939588 T
1 T
80939589 CTTCCATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.21, G:0.05, T:0.42
Consensus pattern (21 bp):
TTTAACAACCAAGATTCCTTT
Found at i:80943570 original size:19 final size:19
Alignment explanation
Indices: 80943546--80943586 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
80943536 ACAGGTATAT
80943546 CATGGATGGAAAAGGTACC
1 CATGGATGGAAAAGGTACC
80943565 CATGGATGGAAAAGGTACC
1 CATGGATGGAAAAGGTACC
80943584 CAT
1 CAT
80943587 TATCACATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.17, G:0.29, T:0.17
Consensus pattern (19 bp):
CATGGATGGAAAAGGTACC
Found at i:80951383 original size:45 final size:46
Alignment explanation
Indices: 80951273--80951394 Score: 151
Period size: 45 Copynumber: 2.6 Consensus size: 46
80951263 TAAGAGCCAA
*
80951273 TGTAAGACCATGTCTGGGACATGGTATCGGTATCGAGACGAGTGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GTATCGGCATCGAGACGAGTGCTAG
* *
80951321 TGTAAGACATGTCTGGGACATGTATCGGCCTTGAGACGTA-TGC-AG
1 TGTAAGACATGTCTGGGACATGTATCGGCATCGAGACG-AGTGCTAG
*
80951366 TGTAAGACATG-CTTGGGACATGCATCGGC
1 TGTAAGACATGTC-TGGGACATGTATCGGC
80951395 TATGAGATGA
Statistics
Matches: 68, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
44 1 0.01
45 28 0.41
46 17 0.25
47 15 0.22
48 7 0.10
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGTATCGGCATCGAGACGAGTGCTAG
Found at i:80951448 original size:47 final size:47
Alignment explanation
Indices: 80951363--80951487 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 47
80951353 GAGACGTATG
* *
80951363 CAGTGTAAGACATGCTTGGGACAT-GCATCGGCTATGAGATGAT-AGT
1 CAGTGTAAGACATGCTTGGGACATGGCATCGACTATGAGAT-ATGAGC
* * * *
80951409 TAGTGTAAGATAATGTTTAGGACATGGCATCGACT-TGAGATATGAGC
1 CAGTGTAAGA-CATGCTTGGGACATGGCATCGACTATGAGATATGAGC
80951456 CAGTGTAAGACCATGCTTGGGACATGGCATCG
1 CAGTGTAAGA-CATGCTTGGGACATGGCATCG
80951488 GCACTTTACC
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
46 11 0.17
47 46 0.71
48 8 0.12
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (47 bp):
CAGTGTAAGACATGCTTGGGACATGGCATCGACTATGAGATATGAGC
Found at i:80958921 original size:18 final size:18
Alignment explanation
Indices: 80958894--80958932 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
80958884 ACATGGCATC
*
80958894 AGTATTGAGAAGAGTGCT
1 AGTATCGAGAAGAGTGCT
*
80958912 AGTATCGAGACGAGTGCT
1 AGTATCGAGAAGAGTGCT
80958930 AGT
1 AGT
80958933 GTAAGACATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.31, C:0.10, G:0.33, T:0.26
Consensus pattern (18 bp):
AGTATCGAGAAGAGTGCT
Found at i:80959074 original size:93 final size:94
Alignment explanation
Indices: 80958930--80959101 Score: 233
Period size: 93 Copynumber: 1.8 Consensus size: 94
80958920 GACGAGTGCT
* **
80958930 AGTGTAAGACATGTTTGGGACATGCATCGACCTTGAGACATAAGCCAGTGTAAGA-CATGTTTGG
1 AGTGTAAGACATGTTTGGGACATGCATCGAACTTGAGACATAAGCCAGTGTAAGACCATGCCTGG
80958994 GACAT-GCATCGGCTTCGAGATGATAGTC
66 GACATGGCATCGGCTTCGAGATGATAGTC
* * * *
80959022 AGTGTAAGACCATGTTTGGGACATGGCAT-TAACTTGAGATATGAGCTAGTGTAAGACCATGCCT
1 AGTGTAAGA-CATGTTTGGGACAT-GCATCGAACTTGAGACATAAGCCAGTGTAAGACCATGCCT
*
80959086 GGGATATGGCATCGGC
64 GGGACATGGCATCGGC
80959102 ACTTTACCCC
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
92 9 0.13
93 36 0.53
94 15 0.22
95 8 0.12
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (94 bp):
AGTGTAAGACATGTTTGGGACATGCATCGAACTTGAGACATAAGCCAGTGTAAGACCATGCCTGG
GACATGGCATCGGCTTCGAGATGATAGTC
Found at i:80959089 original size:47 final size:44
Alignment explanation
Indices: 80958927--80959078 Score: 171
Period size: 46 Copynumber: 3.3 Consensus size: 44
80958917 CGAGACGAGT
* *
80958927 GCTAGTGTAAGACATGTTTGGGACATGCATCGACCTTGAGACATAA
1 GCTAGTGTAAGACATGTTTGGGACATGCATC-AACTTGAGATAT-A
* **
80958973 GCCAGTGTAAGACATGTTTGGGACATGCATCGGCTTCGAGATGATA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCAACTT-GAGAT-ATA
*
80959019 G-TCAGTGTAAGACCATGTTTGGGACATGGCATTAACTTGAGATATGA
1 GCT-AGTGTAAGA-CATGTTTGGGACAT-GCATCAACTTGAGATAT-A
80959066 GCTAGTGTAAGAC
1 GCTAGTGTAAGAC
80959079 CATGCCTGGG
Statistics
Matches: 91, Mismatches: 8, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
45 3 0.03
46 48 0.53
47 32 0.35
48 8 0.09
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (44 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCAACTTGAGATATA
Found at i:80963495 original size:25 final size:25
Alignment explanation
Indices: 80963467--80963518 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
80963457 ATGTAAATAA
* *
80963467 TACTAGAAAAAAATATAGTTTAATT
1 TACTAAAAAAAAATAAAGTTTAATT
80963492 TACTAAAAAAAAATAAAGTTTAATT
1 TACTAAAAAAAAATAAAGTTTAATT
80963517 TA
1 TA
80963519 ATTAAACTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.35
Consensus pattern (25 bp):
TACTAAAAAAAAATAAAGTTTAATT
Found at i:80966143 original size:40 final size:40
Alignment explanation
Indices: 80966099--80966225 Score: 184
Period size: 40 Copynumber: 3.2 Consensus size: 40
80966089 GGCCATGTAA
*
80966099 GTGCATTTAGGGGTAACGAAGTACAAACAAGGGCACGTAT
1 GTGCATTTAGGGGTACCGAAGTACAAACAAGGGCACGTAT
* *
80966139 GTGCATTTAGGGGTACCGAAGTACAAACATGGGCACGTTT
1 GTGCATTTAGGGGTACCGAAGTACAAACAAGGGCACGTAT
* * *
80966179 GTGCATTCAGGGGTACCGAAGTACAAA-TAGGAGCACATAT
1 GTGCATTTAGGGGTACCGAAGTACAAACAAGG-GCACGTAT
80966219 GTGCATT
1 GTGCATT
80966226 CACTCAATAG
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 2 0.03
40 76 0.97
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (40 bp):
GTGCATTTAGGGGTACCGAAGTACAAACAAGGGCACGTAT
Found at i:80971632 original size:33 final size:33
Alignment explanation
Indices: 80971494--80971637 Score: 94
Period size: 33 Copynumber: 4.3 Consensus size: 33
80971484 TGGCCATGCC
** * *
80971494 ATGGTCTTATGTTCTTAGTGCCATAACCCAATT
1 ATGGTCTTACATTCATAGTGCCATAACCCAACT
* * *
80971527 ATGGTCTTACCA-TCAGAATGCCATAGCCCAACT
1 ATGGTCTTA-CATTCATAGTGCCATAACCCAACT
* * * *** *
80971560 ATGGTCTTATATAT-ATACACTGTCATGGTCCAACC
1 ATGGTCTTACAT-TCAT--AGTGCCATAACCCAACT
* *
80971595 ATGGTCTTACATTCATAGTGCCATAATCCAATT
1 ATGGTCTTACATTCATAGTGCCATAACCCAACT
80971628 ATGGTCTTAC
1 ATGGTCTTAC
80971638 CATTAGAATG
Statistics
Matches: 84, Mismatches: 21, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
32 1 0.01
33 56 0.67
34 2 0.02
35 25 0.30
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.34
Consensus pattern (33 bp):
ATGGTCTTACATTCATAGTGCCATAACCCAACT
Found at i:80971663 original size:101 final size:101
Alignment explanation
Indices: 80971479--80971705 Score: 321
Period size: 101 Copynumber: 2.2 Consensus size: 101
80971469 TCAAGTGCAT
* ** *
80971479 TGCCATGG-CCATGCCATGGTCTTATGTTCTTAGTGCCATAACCCAATTATGGTCTTACCATCAG
1 TGCCATGGTCCA-ACCATGGTCTTACATTCATAGTGCCATAACCCAATTATGGTCTTACCATCAG
*
80971543 AATGCCATAGCCCAACTATGGTCTTATATATATACAC
65 AATGCCATAGCCCAACTATGGTATTATATATATACAC
* * *
80971580 TGTCATGGTCCAACCATGGTCTTACATTCATAGTGCCATAATCCAATTATGGTCTTACCATTAGA
1 TGCCATGGTCCAACCATGGTCTTACATTCATAGTGCCATAACCCAATTATGGTCTTACCATCAGA
* * * *
80971645 ATGTCATAGCCTAGCTATGGTATTATATATATACAT
66 ATGCCATAGCCCAACTATGGTATTATATATATACAC
*
80971681 TGCCATGGTCTAACCATGGTCTTAC
1 TGCCATGGTCCAACCATGGTCTTAC
80971706 GTCTGAATAG
Statistics
Matches: 111, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
101 108 0.97
102 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.33
Consensus pattern (101 bp):
TGCCATGGTCCAACCATGGTCTTACATTCATAGTGCCATAACCCAATTATGGTCTTACCATCAGA
ATGCCATAGCCCAACTATGGTATTATATATATACAC
Found at i:80974525 original size:13 final size:13
Alignment explanation
Indices: 80974509--80974534 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80974499 CCCTTTATGT
80974509 TTCTCCTTAAATA
1 TTCTCCTTAAATA
80974522 TTCTCCTTAAATA
1 TTCTCCTTAAATA
80974535 ACAAATGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (13 bp):
TTCTCCTTAAATA
Found at i:80975384 original size:24 final size:24
Alignment explanation
Indices: 80975352--80975400 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
80975342 AGAAAGGTGG
*
80975352 AAATTTTTCAACTATAATAATTCA
1 AAATCTTTCAACTATAATAATTCA
*
80975376 AAATCTTTCAGCTATAATAATTCA
1 AAATCTTTCAACTATAATAATTCA
80975400 A
1 A
80975401 TTCTTAAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.39
Consensus pattern (24 bp):
AAATCTTTCAACTATAATAATTCA
Found at i:80975413 original size:23 final size:24
Alignment explanation
Indices: 80975363--80975414 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
80975353 AATTTTTCAA
** *
80975363 CTATAATAATTCAAAATCTTTCAG
1 CTATAATAATTCAAAATCTTAAAC
*
80975387 CTATAATAATTC-AATTCTTAAAC
1 CTATAATAATTCAAAATCTTAAAC
80975410 CTATA
1 CTATA
80975415 CAAGTCTCTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 12 0.50
24 12 0.50
ACGTcount: A:0.42, C:0.17, G:0.02, T:0.38
Consensus pattern (24 bp):
CTATAATAATTCAAAATCTTAAAC
Found at i:80976388 original size:13 final size:13
Alignment explanation
Indices: 80976356--80976380 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80976346 AGATATCAAA
80976356 CTTACCATTCATT
1 CTTACCATTCATT
80976369 CTTACCATTCAT
1 CTTACCATTCAT
80976381 ATTTACCACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.32, G:0.00, T:0.44
Consensus pattern (13 bp):
CTTACCATTCATT
Found at i:80976932 original size:45 final size:45
Alignment explanation
Indices: 80976872--80977088 Score: 162
Period size: 45 Copynumber: 4.8 Consensus size: 45
80976862 CGCTCCAAGG
* *
80976872 GATGTCAT-GTCATCTTTCAACCATGGTCTTATTCATTTTCAAAGT
1 GATGTCATAGT-ATCTTTCAACTATGGTCTTATTCATTATCAAAGT
* *
80976917 -AGTGTCATAGTATCTTTCAACTATGGTCTTGA-TCATTATCGATGT
1 GA-TGTCATAGTATCTTTCAACTATGGTCTT-ATTCATTATCAAAGT
* * * *
80976962 GATGCCATAATATCTTTCAACTATGGTCTTATT--TGTAT-AGGATT
1 GATGTCATAGTATCTTTCAACTATGGTCTTATTCAT-TATCA-AAGT
* * * * *
80977006 CAATGTCATAATATCTTTCAACTATAGTCTTATAT-AGTT-TCCAATT
1 -GATGTCATAGTATCTTTCAACTATGGTCTTAT-TCA-TTATCAAAGT
* *
80977052 TATTTTCATAGTATCTTTCAACTATGGTCTTATTCAT
1 GA-TGTCATAGTATCTTTCAACTATGGTCTTATTCAT
80977089 CCCAGTTTGA
Statistics
Matches: 139, Mismatches: 19, Indels: 28
0.75 0.10 0.15
Matches are distributed among these distances:
43 1 0.01
44 6 0.04
45 93 0.67
46 37 0.27
47 1 0.01
48 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.12, T:0.44
Consensus pattern (45 bp):
GATGTCATAGTATCTTTCAACTATGGTCTTATTCATTATCAAAGT
Found at i:80989371 original size:31 final size:31
Alignment explanation
Indices: 80989333--80989397 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
80989323 ATTTATAGTC
80989333 TTTAGAATGCTCAAAAAGCCTAAAAATTGGG
1 TTTAGAATGCTCAAAAAGCCTAAAAATTGGG
80989364 TTTAGAATGCTCAAAAAGCCTAAAAATTGGG
1 TTTAGAATGCTCAAAAAGCCTAAAAATTGGG
80989395 TTT
1 TTT
80989398 TTCTACATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.29
Consensus pattern (31 bp):
TTTAGAATGCTCAAAAAGCCTAAAAATTGGG
Found at i:81000926 original size:49 final size:49
Alignment explanation
Indices: 81000847--81001093 Score: 305
Period size: 49 Copynumber: 5.0 Consensus size: 49
81000837 TCTATTGTGA
* *
81000847 GGTCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * *
81000896 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA--TT
* * * *** **
81000947 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTGTTAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* *
81000996 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* **
81001046 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCCTACCAGATAAT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAAT
81001094 CTTGTCTACA
Statistics
Matches: 168, Mismatches: 27, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 87 0.52
50 43 0.26
51 38 0.23
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:81000983 original size:28 final size:28
Alignment explanation
Indices: 81000951--81001034 Score: 92
Period size: 28 Copynumber: 3.2 Consensus size: 28
81000941 AACTTTGATC
81000951 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* *
81000979 ACGTGTGTTAG-A-T-GGT-TAGG-T-C-
1 ACGTGTG-TAGTACTAAGTGCAGGCTACT
81001001 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
81001029 ACGTGT
1 ACGTGT
81001035 ACCAGATAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 16
0.69 0.06 0.25
Matches are distributed among these distances:
21 3 0.07
22 8 0.18
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.32
29 3 0.07
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.31
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:81001037 original size:101 final size:98
Alignment explanation
Indices: 81000849--81001093 Score: 301
Period size: 101 Copynumber: 2.5 Consensus size: 98
81000839 TATTGTGAGG
* * *
81000849 TCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
* *
81000914 AAGTGCAGGCTACTATGCGTACCCGATAACTTTGA
66 AAGTGCAGGCTACTACGCGTACCAGATAA--TTGA
*** ** *
81000949 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTGTTAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
* *
81001014 TAAGTGCAGGCTACTACGTGTACCAGATAATTGG
65 TAAGTGCAGGCTACTACGCGTACCAGATAATTGA
* * * **
81001048 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCCTACCAGATAAT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAT
81001094 CTTGTCTACA
Statistics
Matches: 121, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
99 39 0.32
100 40 0.33
101 42 0.35
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCAGATAATTGA
Found at i:81003598 original size:50 final size:50
Alignment explanation
Indices: 81003539--81003639 Score: 184
Period size: 50 Copynumber: 2.0 Consensus size: 50
81003529 TGAATCATAT
81003539 AAAAGGACACGATCCCCAACTATGAATTGTTTGGGCTGCTTCAAACGAGC
1 AAAAGGACACGATCCCCAACTATGAATTGTTTGGGCTGCTTCAAACGAGC
* *
81003589 AAAAGGACACGATCCCCAACTGTGAATTGTTTGGGCTGCTTCAAATGAGC
1 AAAAGGACACGATCCCCAACTATGAATTGTTTGGGCTGCTTCAAACGAGC
81003639 A
1 A
81003640 TCTTGGCGTC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.23
Consensus pattern (50 bp):
AAAAGGACACGATCCCCAACTATGAATTGTTTGGGCTGCTTCAAACGAGC
Found at i:81013960 original size:14 final size:14
Alignment explanation
Indices: 81013924--81013960 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
81013914 GATTTCTCCC
*
81013924 TTTCCCTATTCCTT
1 TTTCCCTTTTCCTT
81013938 TTTCCCTTTTCCTT
1 TTTCCCTTTTCCTT
*
81013952 TTTCTCTTT
1 TTTCCCTTT
81013961 GTCATCCACC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.03, C:0.32, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTCCCTTTTCCTT
Found at i:81014327 original size:28 final size:30
Alignment explanation
Indices: 81014288--81014355 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 30
81014278 CTTTTATTCA
81014288 TTATCTTTA-TTTGTTAATTTTTATTATA-T
1 TTAT-TTTATTTTGTTAATTTTTATTATAGT
* *
81014317 TTATTTTATTTTTTGTTATTTTTTATTTTAGT
1 TTATTTTA--TTTTGTTAATTTTTATTATAGT
81014349 TTATTTT
1 TTATTTT
81014356 CATTCTTTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
28 4 0.12
29 4 0.12
31 17 0.52
32 8 0.24
ACGTcount: A:0.19, C:0.01, G:0.04, T:0.75
Consensus pattern (30 bp):
TTATTTTATTTTGTTAATTTTTATTATAGT
Found at i:81014352 original size:17 final size:17
Alignment explanation
Indices: 81014305--81014355 Score: 56
Period size: 15 Copynumber: 3.2 Consensus size: 17
81014295 TATTTGTTAA
*
81014305 TTTTTATTATA-TTTAT
1 TTTTTATTTTAGTTTAT
81014321 TTTATT-TTTT-G-TTAT
1 TTT-TTATTTTAGTTTAT
81014336 TTTTTATTTTAGTTTAT
1 TTTTTATTTTAGTTTAT
81014353 TTT
1 TTT
81014356 CATTCTTTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
14 2 0.07
15 11 0.38
16 7 0.24
17 9 0.31
ACGTcount: A:0.18, C:0.00, G:0.04, T:0.78
Consensus pattern (17 bp):
TTTTTATTTTAGTTTAT
Found at i:81016011 original size:6 final size:6
Alignment explanation
Indices: 81016000--81016052 Score: 52
Period size: 6 Copynumber: 8.7 Consensus size: 6
81015990 TGTTATTTTC
* * * * *
81016000 TTTTAT TTTTAT TATTAGT TTTCAT TTTTAT TTTTCT GTTTAT TTATAT
1 TTTTAT TTTTAT TTTTA-T TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
81016049 TTTT
1 TTTT
81016053 TAGACTCTTT
Statistics
Matches: 36, Mismatches: 10, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
6 32 0.89
7 4 0.11
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.75
Consensus pattern (6 bp):
TTTTAT
Done.