Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 246 of 333
Found at i:81028683 original size:25 final size:25
Alignment explanation
Indices: 81028654--81028707 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
81028644 TCTTTAGGGT
81028654 ATTTTT-GGGTTT-TTAATGTTTAAG
1 ATTTTTGGGGTTTGTTAAT-TTTAAG
*
81028678 ATTTTTGGGGTTTGGTTAGTTTTAAG
1 ATTTTTGGGGTTT-GTTAATTTTAAG
81028704 ATTT
1 ATTT
81028708 AAGGTTTTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 6 0.23
25 6 0.23
26 10 0.38
27 4 0.15
ACGTcount: A:0.19, C:0.00, G:0.24, T:0.57
Consensus pattern (25 bp):
ATTTTTGGGGTTTGTTAATTTTAAG
Found at i:81032622 original size:30 final size:30
Alignment explanation
Indices: 81032586--81032661 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
81032576 TGGTTAACCC
* * * *
81032586 ATCCCTTTTCATAATTCGATAATCGAAGTT
1 ATCCCTTTTCATAATTCAACAACCGAAGCT
* *
81032616 ATCCCTTTTCATAGTTCAACAGCCGAAGCT
1 ATCCCTTTTCATAATTCAACAACCGAAGCT
*
81032646 ATCCATTTTCATAATT
1 ATCCCTTTTCATAATT
81032662 TGATGGTTAT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (30 bp):
ATCCCTTTTCATAATTCAACAACCGAAGCT
Found at i:81032685 original size:30 final size:30
Alignment explanation
Indices: 81032646--81032839 Score: 112
Period size: 30 Copynumber: 6.5 Consensus size: 30
81032636 AGCCGAAGCT
* * *
81032646 ATCCATTTTCATAATTTGATGGTTATCATC
1 ATCCCTTTTCATAATTTGATGGTCATCACC
**
81032676 ATCCCTTTTCATTGTTTGATGGTCATCACC
1 ATCCCTTTTCATAATTTGATGGTCATCACC
* * *
81032706 AT-CCTTTCTCATAATTTGATAG-C-TGAAGCT
1 ATCCCTTT-TCATAATTTGATGGTCAT-CA-CC
* * * * * *
81032736 ATTCCTTTTCATAAATCGATAGCCGA-AACC
1 ATCCCTTTTCATAATTTGATGGTC-ATCACC
* * * *
81032766 ATCCCTCTTCAAAATTTGATTGTCGTCACC
1 ATCCCTTTTCATAATTTGATGGTCATCACC
** *
81032796 ATCTATTTTCAT--TGTTGATGGTCGTCACC
1 ATCCCTTTTCATAAT-TTGATGGTCATCACC
81032825 ATCCCTTTTCATAAT
1 ATCCCTTTTCATAAT
81032840 AGACAACTGA
Statistics
Matches: 124, Mismatches: 29, Indels: 21
0.71 0.17 0.12
Matches are distributed among these distances:
28 2 0.02
29 31 0.25
30 82 0.66
31 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.41
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATGGTCATCACC
Found at i:81032819 original size:29 final size:29
Alignment explanation
Indices: 81032781--81032836 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
81032771 TCTTCAAAAT
* *
81032781 TTGATTGTCGTCACCATCTATTTTCATTG
1 TTGATGGTCGTCACCATCCATTTTCATTG
*
81032810 TTGATGGTCGTCACCATCCCTTTTCAT
1 TTGATGGTCGTCACCATCCATTTTCAT
81032837 AATAGACAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.16, C:0.25, G:0.14, T:0.45
Consensus pattern (29 bp):
TTGATGGTCGTCACCATCCATTTTCATTG
Found at i:81034443 original size:26 final size:26
Alignment explanation
Indices: 81034414--81034521 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
81034404 TGGTACAAAT
81034414 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
81034440 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81034466 TGATAATGGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81034492 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81034518 TGAT
1 TGAT
81034522 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81039234 original size:14 final size:14
Alignment explanation
Indices: 81039215--81039247 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
81039205 TAGTTGATTC
81039215 TTATTAATATGTTG
1 TTATTAATATGTTG
81039229 TTATTAATATGTTG
1 TTATTAATATGTTG
81039243 TTATT
1 TTATT
81039248 GAATGATTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.61
Consensus pattern (14 bp):
TTATTAATATGTTG
Found at i:81043402 original size:40 final size:40
Alignment explanation
Indices: 81043164--81043388 Score: 405
Period size: 40 Copynumber: 5.6 Consensus size: 40
81043154 GGATTGATAC
* *
81043164 CCGGGCTAAGTCCCGAAGACATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
81043204 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
81043244 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
81043284 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
81043324 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
81043364 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
81043389 AGCTAGTAGC
Statistics
Matches: 180, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 180 1.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:81057605 original size:25 final size:25
Alignment explanation
Indices: 81057577--81057630 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
81057567 TCTTTAGGGT
*
81057577 ATTTTTGGGTTT-TTTAATGTTTAAG
1 ATTTTTGGGTTTGGTTAAT-TTTAAG
*
81057602 ATTTTTGGGTTTGGTTAGTTTTAAG
1 ATTTTTGGGTTTGGTTAATTTTAAG
81057627 ATTT
1 ATTT
81057631 AAGGTTTTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 22 0.85
26 4 0.15
ACGTcount: A:0.19, C:0.00, G:0.22, T:0.59
Consensus pattern (25 bp):
ATTTTTGGGTTTGGTTAATTTTAAG
Found at i:81061567 original size:28 final size:29
Alignment explanation
Indices: 81061522--81061711 Score: 97
Period size: 30 Copynumber: 6.5 Consensus size: 29
81061512 CAGCCGAGCT
* *
81061522 ATCCATTTTCATAATTTGATGGTTATC-TC
1 ATCC-TTTTCATAATTTGATGGTCATCACC
**
81061551 ATCCTTTTCATTGTTTGATGGTCATCACC
1 ATCCTTTTCATAATTTGATGGTCATCACC
* * *
81061580 ATCCTTTCTCATAATTTGATAG-C-TGAAGCT
1 ATCCTTT-TCATAATTTGATGGTCAT-CA-CC
* * * * *
81061610 ATTCCTTTTCATAAATCGATAGCCGA-AACC
1 A-TCCTTTTCATAATTTGATGGTC-ATCACC
* * * *
81061640 ATCCCTCTTCAAAATTTGATTGTCGTCACC
1 AT-CCTTTTCATAATTTGATGGTCATCACC
*
81061670 AT-CTATTTCAT--TGTTGATGGTCGTCACC
1 ATCCT-TTTCATAAT-TTGATGGTCATCACC
81061698 ATCCTTTTCATAAT
1 ATCCTTTTCATAAT
81061712 AGACAACTGA
Statistics
Matches: 123, Mismatches: 23, Indels: 29
0.70 0.13 0.17
Matches are distributed among these distances:
27 1 0.01
28 44 0.36
29 21 0.17
30 48 0.39
31 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.12, T:0.41
Consensus pattern (29 bp):
ATCCTTTTCATAATTTGATGGTCATCACC
Found at i:81063319 original size:26 final size:25
Alignment explanation
Indices: 81063280--81063384 Score: 158
Period size: 25 Copynumber: 4.2 Consensus size: 25
81063270 ATGGTACAAT
81063280 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
*
81063306 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGG-TTAGGTAAATGTTCCA
* *
81063332 TGATAATGGGTAGATAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTCCA
81063357 TGATAATGGTTAGGTAAATGTT-CA
1 TGATAATGGTTAGGTAAATGTTCCA
81063381 TGAT
1 TGAT
81063385 GGGCATTTCA
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
24 6 0.08
25 35 0.49
26 31 0.43
ACGTcount: A:0.34, C:0.07, G:0.24, T:0.35
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:81063351 original size:51 final size:50
Alignment explanation
Indices: 81063280--81063384 Score: 167
Period size: 51 Copynumber: 2.1 Consensus size: 50
81063270 ATGGTACAAT
*
81063280 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGATAAATGTTCCATGATAATGG-TTAGGTAAATATT-CA
*
81063332 TGATAATGGG-TAGATAAATGTTCCATGATAATGGTTAGGTAAATGTTCA
1 TGATAATGGGTTAGATAAATGTTCCATGATAATGGTTAGGTAAATATTCA
81063381 TGAT
1 TGAT
81063385 GGGCATTTCA
Statistics
Matches: 51, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
49 6 0.12
50 12 0.24
51 23 0.45
52 10 0.20
ACGTcount: A:0.34, C:0.07, G:0.24, T:0.35
Consensus pattern (50 bp):
TGATAATGGGTTAGATAAATGTTCCATGATAATGGTTAGGTAAATATTCA
Found at i:81072027 original size:39 final size:40
Alignment explanation
Indices: 81071910--81072088 Score: 291
Period size: 40 Copynumber: 4.7 Consensus size: 40
81071900 TCGGATTGAT
81071910 ACCGGGCTAAGTCCCGAAGGCATTTGTGC-AG-TACTA-A
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
81071947 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAT-
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
81071984 ACCGGGCTAAGTCCCGAAGGCATTTGTGC-AGTTACTATA
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
81072023 ACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATA
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
81072063 ACCGGGCTAAGTCCCGAAGGCATTTG
1 ACCGGGCTAAGTCCCGAAGGCATTTG
81072089 AGCTAGTAGC
Statistics
Matches: 132, Mismatches: 3, Indels: 11
0.90 0.02 0.08
Matches are distributed among these distances:
35 6 0.05
36 12 0.09
37 25 0.19
38 19 0.14
39 34 0.26
40 36 0.27
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:81080399 original size:40 final size:40
Alignment explanation
Indices: 81080201--81080385 Score: 343
Period size: 40 Copynumber: 4.6 Consensus size: 40
81080191 GGATTGATAC
*
81080201 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
81080241 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
81080281 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
81080321 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
81080361 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
81080386 AGCTAGTAGC
Statistics
Matches: 140, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:81080399 original size:80 final size:79
Alignment explanation
Indices: 81080201--81080408 Score: 346
Period size: 80 Copynumber: 2.6 Consensus size: 79
81080191 GGATTGATAC
81080201 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCAGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC-GGCTAAGTCCCGAAGGCATTTG
81080266 TGCGAGTTACTATAA
65 TGCGAGTTACTATAA
* *
81080281 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC-GGCTAAGTCCCGAAGGCATTTG
81080346 TGCGAGTTACTATAA
65 TGCGAGTTACTATAA
* *
81080361 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATATCCGGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGCTAA
81080409 ACTCCGAAGG
Statistics
Matches: 120, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
79 8 0.07
80 112 0.93
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCATTTGT
GCGAGTTACTATAA
Found at i:81090778 original size:12 final size:12
Alignment explanation
Indices: 81090763--81090787 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81090753 GTGAAAAAAT
81090763 AAAATAAAATAA
1 AAAATAAAATAA
81090775 AAAATAAAATAA
1 AAAATAAAATAA
81090787 A
1 A
81090788 GAACACACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:81095214 original size:5 final size:5
Alignment explanation
Indices: 81095204--81095236 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
81095194 AATTTGTGAA
81095204 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
81095237 GAACACACAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:81107282 original size:32 final size:31
Alignment explanation
Indices: 81107236--81107307 Score: 110
Period size: 32 Copynumber: 2.3 Consensus size: 31
81107226 TTGTGCTGAA
*
81107236 TTCTATTCTCCCTCTACCTCATTTTTGACTTT
1 TTCTATTCTTCCTCTACCTCATTTTTGAC-TT
*
81107268 TTCTATTCTTCCTCTACCTTATTTTTGACTT
1 TTCTATTCTTCCTCTACCTCATTTTTGACTT
81107299 TTCT-TTCTT
1 TTCTATTCTT
81107308 TTTCCTTAGA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 5 0.13
31 6 0.16
32 27 0.71
ACGTcount: A:0.11, C:0.28, G:0.03, T:0.58
Consensus pattern (31 bp):
TTCTATTCTTCCTCTACCTCATTTTTGACTT
Found at i:81108118 original size:29 final size:28
Alignment explanation
Indices: 81108085--81108181 Score: 90
Period size: 29 Copynumber: 3.4 Consensus size: 28
81108075 TAATATGATA
81108085 TGGGCCATATGAATGAGAATTGGGCCTAG
1 TGGGCCATATGAAT-AGAATTGGGCCTAG
* * *
81108114 TGGGCCATAAGAATATGAACTAGGCC-AG
1 TGGGCCATATGAATA-GAATTGGGCCTAG
* * *
81108142 ATGGGTCATTTGAATA-AGATTGGGCCTAA
1 -TGGGCCATATGAATAGA-ATTGGGCCTAG
81108171 TGGGCCATATG
1 TGGGCCATATG
81108182 CATGTATGCA
Statistics
Matches: 53, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
27 1 0.02
28 18 0.34
29 34 0.64
ACGTcount: A:0.30, C:0.14, G:0.31, T:0.25
Consensus pattern (28 bp):
TGGGCCATATGAATAGAATTGGGCCTAG
Found at i:81109965 original size:27 final size:27
Alignment explanation
Indices: 81109935--81110086 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
81109925 ATATTAAGTC
* *
81109935 CGCACACTCAGTGCTATATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
81109962 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
81109990 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
81110017 CGCACACTTAGTGCAACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
81110044 CGCACACTTAGTGCTACATAGTCCAACT
1 CGCACACTTAGTGCTACATAGT-CAACT
81110072 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81110087 GTACAATTTA
Statistics
Matches: 115, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
27 70 0.61
28 45 0.39
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:81110003 original size:55 final size:54
Alignment explanation
Indices: 81109935--81110086 Score: 232
Period size: 55 Copynumber: 2.8 Consensus size: 54
81109925 ATATTAAGTC
* *
81109935 CGCACACTCAGTGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATC-AACT
* * * *
81109990 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCAACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
81110044 CGCACACTTAGTGCTACATAGTCCAACTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGT-CAACTCGCACACTTAGTGCT
81110087 GTACAATTTA
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 25 0.28
55 63 0.72
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
Found at i:81110072 original size:82 final size:82
Alignment explanation
Indices: 81109935--81110086 Score: 250
Period size: 82 Copynumber: 1.9 Consensus size: 82
81109925 ATATTAAGTC
* *
81109935 CGCACACTCAGTGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
81110000 GTGCTACATAGTCAATT
66 GTGCTACATAGTCAATT
* * * *
81110017 CGCACACTTAGTGCAACATAGTCAATTCGCACACTTAGTGCTACATAGTCCAACTCGCACACTTA
1 CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
81110082 GTGCT
66 GTGCT
81110087 GTACAATTTA
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
82 64 1.00
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.26
Consensus pattern (82 bp):
CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAGTCAATT
Found at i:81118065 original size:27 final size:27
Alignment explanation
Indices: 81118035--81118186 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
81118025 ATATTAAGTC
* *
81118035 CGCACACTCAGTGCTATATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
81118062 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
81118090 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
81118117 CGCACACTTAGTGCAACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
81118144 CGCACACTTAGTGCTACATAGTCCAACT
1 CGCACACTTAGTGCTACATAGT-CAACT
81118172 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81118187 GTACAATTTA
Statistics
Matches: 115, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
27 70 0.61
28 45 0.39
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:81118103 original size:55 final size:54
Alignment explanation
Indices: 81118035--81118186 Score: 232
Period size: 55 Copynumber: 2.8 Consensus size: 54
81118025 ATATTAAGTC
* *
81118035 CGCACACTCAGTGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATC-AACT
* * * *
81118090 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCAACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
81118144 CGCACACTTAGTGCTACATAGTCCAACTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGT-CAACTCGCACACTTAGTGCT
81118187 GTACAATTTA
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 25 0.28
55 63 0.72
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
Found at i:81118172 original size:82 final size:82
Alignment explanation
Indices: 81118035--81118186 Score: 250
Period size: 82 Copynumber: 1.9 Consensus size: 82
81118025 ATATTAAGTC
* *
81118035 CGCACACTCAGTGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
81118100 GTGCTACATAGTCAATT
66 GTGCTACATAGTCAATT
* * * *
81118117 CGCACACTTAGTGCAACATAGTCAATTCGCACACTTAGTGCTACATAGTCCAACTCGCACACTTA
1 CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
81118182 GTGCT
66 GTGCT
81118187 GTACAATTTA
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
82 64 1.00
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.26
Consensus pattern (82 bp):
CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAGTCAATT
Found at i:81129252 original size:15 final size:16
Alignment explanation
Indices: 81129227--81129257 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
81129217 AATCTCTCTA
81129227 TTAATAAATTAAAATT
1 TTAATAAATTAAAATT
81129243 TTAA-AAATTAAAATT
1 TTAATAAATTAAAATT
81129258 CTATACTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TTAATAAATTAAAATT
Found at i:81140147 original size:16 final size:16
Alignment explanation
Indices: 81140105--81140150 Score: 56
Period size: 18 Copynumber: 2.7 Consensus size: 16
81140095 TTTAAAATTT
*
81140105 TGTAATGTTTTATATTA
1 TGTAAT-TTATATATTA
81140122 TGCTATATTTATATATTA
1 TG-TA-ATTTATATATTA
81140140 TGTAATTTATA
1 TGTAATTTATA
81140151 ACACATAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 7 0.27
17 4 0.15
18 13 0.50
19 2 0.08
ACGTcount: A:0.33, C:0.02, G:0.09, T:0.57
Consensus pattern (16 bp):
TGTAATTTATATATTA
Found at i:81141178 original size:16 final size:16
Alignment explanation
Indices: 81141143--81141178 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
81141133 TACATTAATT
*
81141143 TTCTCTTTTTTATTTT
1 TTCTCTTTTTTATTTC
*
81141159 TTCTCTTTTTTCTTTC
1 TTCTCTTTTTTATTTC
81141175 TTCT
1 TTCT
81141179 TCATTTAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (16 bp):
TTCTCTTTTTTATTTC
Found at i:81142365 original size:20 final size:18
Alignment explanation
Indices: 81142320--81142374 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
81142310 TTAGAAATGA
81142320 TTAATATATATATAAAAC
1 TTAATATATATATAAAAC
* *
81142338 ATACTATATGATATAATAAC
1 TTAATATAT-ATATAA-AAC
*
81142358 TTAATATATTTATAAAA
1 TTAATATATATATAAAA
81142375 ATAATAATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
18 9 0.30
19 11 0.37
20 10 0.33
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (18 bp):
TTAATATATATATAAAAC
Found at i:81142567 original size:7 final size:7
Alignment explanation
Indices: 81142555--81142586 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
81142545 AATATAGGGA
81142555 ATAATAT
1 ATAATAT
81142562 ATAATA-
1 ATAATAT
81142568 A-AATAT
1 ATAATAT
81142574 ATAATAT
1 ATAATAT
81142581 ATAATA
1 ATAATA
81142587 AAAGCATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
5 4 0.17
6 2 0.09
7 17 0.74
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (7 bp):
ATAATAT
Found at i:81142598 original size:19 final size:19
Alignment explanation
Indices: 81142555--81142598 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
81142545 AATATAGGGA
*
81142555 ATAATATATAATAAAATAT
1 ATAATATATAATAAAACAT
81142574 ATAATATATAATAAAAGCAT
1 ATAATATATAATAAAA-CAT
81142594 A-AATA
1 ATAATA
81142599 AAATATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 20 0.87
20 3 0.13
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (19 bp):
ATAATATATAATAAAACAT
Found at i:81142632 original size:29 final size:30
Alignment explanation
Indices: 81142568--81142646 Score: 83
Period size: 31 Copynumber: 2.6 Consensus size: 30
81142558 ATATATAATA
81142568 AAATATAT-AATATATAATAAAAGCATAAAT
1 AAATATATAAATATA-AATAAAAGCATAAAT
*
81142598 AAAATATATAAATATAAATAACATG-ATAAAT
1 -AAATATATAAATATAAATAA-AAGCATAAAT
* *
81142629 -AATACATAAATAAAAATA
1 AAATATATAAATATAAATA
81142647 TTATATATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
29 16 0.37
31 19 0.44
32 8 0.19
ACGTcount: A:0.66, C:0.04, G:0.03, T:0.28
Consensus pattern (30 bp):
AAATATATAAATATAAATAAAAGCATAAAT
Found at i:81142656 original size:15 final size:15
Alignment explanation
Indices: 81142638--81142749 Score: 52
Period size: 15 Copynumber: 7.4 Consensus size: 15
81142628 TAATACATAA
81142638 ATAAAAATATTATAT
1 ATAAAAATATTATAT
* * *
81142653 ATAATAATTTTACAT
1 ATAAAAATATTATAT
* ** * *
81142668 GTCTAAATAATATTT
1 ATAAAAATATTATAT
*
81142683 ATAAAAATAAATAATAT
1 ATAAAAAT--ATTATAT
*
81142700 ATATAAAATATT-TAAA
1 ATA-AAAATATTAT-AT
81142716 ATAAATAA-ATTATAT
1 ATAAA-AATATTATAT
*
81142731 AT-AAAAT-GTATAT
1 ATAAAAATATTATAT
81142744 ATAAAA
1 ATAAAA
81142750 GGATTAAAAC
Statistics
Matches: 68, Mismatches: 21, Indels: 17
0.64 0.20 0.16
Matches are distributed among these distances:
13 9 0.13
14 5 0.07
15 33 0.49
16 9 0.13
17 7 0.10
18 5 0.07
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (15 bp):
ATAAAAATATTATAT
Found at i:81142705 original size:9 final size:9
Alignment explanation
Indices: 81142682--81142742 Score: 52
Period size: 9 Copynumber: 6.7 Consensus size: 9
81142672 AAATAATATT
81142682 TATA-AAAA
1 TATATAAAA
* *
81142690 TAAATAATA
1 TATATAAAA
81142699 TATATAAAA
1 TATATAAAA
*
81142708 TATTTAAAA
1 TATATAAAA
*
81142717 TAAATAAATTA
1 TATATAAA--A
81142728 TATATAAAA
1 TATATAAAA
*
81142737 TGTATA
1 TATATA
81142743 TATAAAAGGA
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
8 3 0.07
9 30 0.73
11 8 0.20
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (9 bp):
TATATAAAA
Found at i:81142725 original size:31 final size:28
Alignment explanation
Indices: 81142676--81142737 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 28
81142666 ATGTCTAAAT
*
81142676 AATATTTATAAAAATAAATAATATATATAA
1 AATATTTAAAAAAATAAAT--TATATATAA
81142706 AATATTTAAAATAAATAAATTATATATAA
1 AATATTTAAAA-AAATAAATTATATATAA
81142735 AAT
1 AAT
81142738 GTATATATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 12 0.40
30 10 0.33
31 8 0.27
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (28 bp):
AATATTTAAAAAAATAAATTATATATAA
Found at i:81148008 original size:30 final size:31
Alignment explanation
Indices: 81147968--81148025 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
81147958 CAAAATCATA
*
81147968 TTTGTTCAAAATTACAATTTTGCCCCTAAAC
1 TTTGTTCAAAATTACAATTTTACCCCTAAAC
*
81147999 TTTG-TCAAAATTACATTTTTACCCCTA
1 TTTGTTCAAAATTACAATTTTACCCCTA
81148026 GACTCGTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.31, C:0.22, G:0.05, T:0.41
Consensus pattern (31 bp):
TTTGTTCAAAATTACAATTTTACCCCTAAAC
Found at i:81154048 original size:29 final size:30
Alignment explanation
Indices: 81153989--81154046 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
81153979 CATATTTTTT
81153989 TCAAAATTACAATTTTGCCCCTAAACTTTG
1 TCAAAATTACAATTTTGCCCCTAAACTTTG
* *
81154019 TCAAAATTACATTTTTGCCCCTAGACTT
1 TCAAAATTACAATTTTGCCCCTAAACTT
81154047 GTAAATTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TCAAAATTACAATTTTGCCCCTAAACTTTG
Found at i:81157113 original size:47 final size:47
Alignment explanation
Indices: 81157044--81157169 Score: 225
Period size: 47 Copynumber: 2.7 Consensus size: 47
81157034 TTTTATGTGT
*
81157044 ATATATGCGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
*
81157091 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
*
81157138 ATATATGTGATAAGGCCGAATGGCTAATGTGA
1 ATATATGTGATAAGGCCGAATGGCCAATGTGA
81157170 AATACGTATG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 75 1.00
ACGTcount: A:0.35, C:0.13, G:0.26, T:0.26
Consensus pattern (47 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
Found at i:81157208 original size:48 final size:48
Alignment explanation
Indices: 81157139--81157419 Score: 438
Period size: 48 Copynumber: 5.8 Consensus size: 48
81157129 TGAACATGCA
* * *
81157139 TATATGTGATAAGGCCGAATGGCTAATGTGAAATACGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
81157187 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
81157235 CATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
81157283 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
* * *
81157333 TAAATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
81157381 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
81157420 GGCGATGTGC
Statistics
Matches: 217, Mismatches: 12, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
47 1 0.00
48 172 0.79
49 4 0.02
50 39 0.18
51 1 0.00
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:81157346 original size:146 final size:144
Alignment explanation
Indices: 81157140--81157419 Score: 445
Period size: 146 Copynumber: 1.9 Consensus size: 144
81157130 GAACATGCAT
* * * *
81157140 ATATGTGATAAGGCCGAATGGCTAATGTGAAATACGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGATAAAGCCGAATGGCTAATGTGAAATACATATGAGATATGTAAATGTGGTAAAGCCAA
81157205 ATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
66 ATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
81157270 TGTATGAGATATGC
131 TGTATGAGATATGC
* *
81157284 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTAAATGTGGTAAAGC
1 ATATGTGATAAAGCCGAATGGCT-AATGTG-AA-ATACATATGAGATATGTAAATGTGGTAAAGC
* * *
81157348 CAAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
63 CAAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAA
81157413 ATATGTA
128 ATATGTA
81157420 GGCGATGTGC
Statistics
Matches: 124, Mismatches: 9, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
143 1 0.01
144 25 0.20
145 2 0.02
146 96 0.77
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (144 bp):
ATATGTGATAAAGCCGAATGGCTAATGTGAAATACATATGAGATATGTAAATGTGGTAAAGCCAA
ATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
TGTATGAGATATGC
Found at i:81157371 original size:98 final size:98
Alignment explanation
Indices: 81157092--81157416 Score: 432
Period size: 98 Copynumber: 3.4 Consensus size: 98
81157082 TGAACATGCA
* * * * * * *
81157092 TATATGTGTTAAGGCCGAATGGCCAATGTG--AT-GA-ATATGA-ACATGCATATATGTGATAAG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGCA-A-ATGTGGTAAA
*
81157152 GCCGAATGGCTAATGTGAAATACGTATGAGATATG
64 GCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
81157187 TATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGCATATGTGGTAAAGC
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGCAAATGTGGTAAAGC
81157250 CGAATGGCTAATGTGAAATATGTATGAGATATG
66 CGAATGGCTAATGTGAAATATGTATGAGATATG
* *
81157283 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTAAATGTGGTAAAG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATGAGATATGCAAATGTGGTAAAG
* *
81157347 CCAAATGGCTAGTGTGAAATATGTATGAGATATG
65 CCGAATGGCTAATGTGAAATATGTATGAGATATG
*
81157381 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
81157417 GTAGGCGATG
Statistics
Matches: 204, Mismatches: 18, Indels: 13
0.87 0.08 0.06
Matches are distributed among these distances:
95 28 0.14
96 71 0.35
97 7 0.03
98 97 0.48
99 1 0.00
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (98 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGCAAATGTGGTAAAGC
CGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:81157674 original size:37 final size:37
Alignment explanation
Indices: 81157566--81157674 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
81157556 GGAAATATAT
*
81157566 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
81157603 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
81157640 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
81157675 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:81159000 original size:40 final size:40
Alignment explanation
Indices: 81158944--81159292 Score: 464
Period size: 40 Copynumber: 8.7 Consensus size: 40
81158934 GAGAATTGAG
*
81158944 AGTGATATATCCGGGCTAAGTCCCGAAGGGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* ** *
81158984 AGTGATATTTATGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * ***
81159024 AGTGATGTATCCGGACTAAGTTTTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
81159064 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
81159104 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
81159144 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
81159184 AGTGATGTATCCAGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
81159224 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
81159264 GGTGTTATATTCGGGCTAGGTCCCGAAGA
1 AGTGATATATCCGGGCTAAGTCCCGAAGA
81159293 ACAATCATGC
Statistics
Matches: 262, Mismatches: 47, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 262 1.00
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:81159292 original size:80 final size:80
Alignment explanation
Indices: 81158944--81159263 Score: 514
Period size: 80 Copynumber: 4.0 Consensus size: 80
81158934 GAGAATTGAG
* * * * * **
81158944 AGTGATATATCCGGGCTAAGTCCCGAAGGGCATTCGTGCTAGTGATATTTATGGGCTAAGTCCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
81159009 AAGAGCATTCATGCT
66 AAGAGCATTCATGCT
**
81159024 AGTGATGTATCCGGACTAAGTTTTGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
81159089 AAGAGCATTCATGCT
66 AAGAGCATTCATGCT
81159104 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
81159169 AAGAGCATTCATGCT
66 AAGAGCATTCATGCT
* * **
81159184 AGTGATGTATCCAGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
*
81159249 AAGAGCATTCGTGCT
66 AAGAGCATTCATGCT
81159264 GGTGTTATAT
Statistics
Matches: 224, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 224 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (80 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
AAGAGCATTCATGCT
Found at i:81170239 original size:48 final size:48
Alignment explanation
Indices: 81170181--81170484 Score: 319
Period size: 48 Copynumber: 6.3 Consensus size: 48
81170171 CCATGTTAAC
81170181 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
* * * ** * *
81170229 CCGCATACATAGTGCCATA-TAAATC-CGCACATATAGTGCCATACAAAT
1 CCGCACACATAGTGCCTTAGTAATTCACATACATAT--TGACATTCAAAT
*
81170277 TCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
* * ** * *
81170325 CCGCACACATAGTGCCATA-TAAATC-CGCACATATAGTGCCATACAAAT
1 CCGCACACATAGTGCCTTAGTAATTCACATACATAT--TGACATTCAAAT
*
81170373 TCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
* ** ** * * *
81170421 CCGCACACATAGTGCCATACAAATTCGTACACATAGTGCCATTCAAAT
1 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
**
81170469 TAGCACACATAGTGCC
1 CCGCACACATAGTGCC
81170485 AAAGTCATTT
Statistics
Matches: 208, Mismatches: 40, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
46 14 0.07
47 10 0.05
48 160 0.77
49 10 0.05
50 14 0.07
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (48 bp):
CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
Found at i:81170322 original size:96 final size:96
Alignment explanation
Indices: 81170182--81170484 Score: 543
Period size: 96 Copynumber: 3.2 Consensus size: 96
81170172 CATGTTAACC
*
81170182 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCATACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
81170247 ATAAATCCGCACATATAGTGCCATACAAATT
66 ATAAATCCGCACATATAGTGCCATACAAATT
81170278 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
81170343 ATAAATCCGCACATATAGTGCCATACAAATT
66 ATAAATCCGCACATATAGTGCCATACAAATT
81170374 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
* * * * *
81170439 ACAAATTCGTACACATAGTGCCATTCAAATT
66 ATAAATCCGCACATATAGTGCCATACAAATT
*
81170470 AGCACACATAGTGCC
1 CGCACACATAGTGCC
81170485 AAAGTCATTT
Statistics
Matches: 200, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 200 1.00
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (96 bp):
CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
ATAAATCCGCACATATAGTGCCATACAAATT
Found at i:81170485 original size:24 final size:24
Alignment explanation
Indices: 81170153--81170485 Score: 261
Period size: 24 Copynumber: 13.9 Consensus size: 24
81170143 TCAAGCAAGG
*
81170153 AAATTCGCACCCATAGTGCCATGT-
1 AAATTCGCACACATAGTGCCAT-TC
* **
81170177 TAACCCGCACACATAGTGCC-TT-
1 AAATTCGCACACATAGTGCCATTC
* * * *
81170199 AGTAATTCACATACATATTGACATTC
1 A--AATTCGCACACATAGTGCCATTC
* *
81170225 AAATCCGCATACATAGTGCCATAT-
1 AAATTCGCACACATAGTGCCAT-TC
* * *
81170249 AAATCCGCACATATAGTGCCATAC
1 AAATTCGCACACATAGTGCCATTC
81170273 AAATTCGCACACATAGTGCC-TT-
1 AAATTCGCACACATAGTGCCATTC
* * * *
81170295 AGTAATTCACATACATATTGACATTC
1 A--AATTCGCACACATAGTGCCATTC
*
81170321 AAATCCGCACACATAGTGCCATAT-
1 AAATTCGCACACATAGTGCCAT-TC
* * *
81170345 AAATCCGCACATATAGTGCCATAC
1 AAATTCGCACACATAGTGCCATTC
81170369 AAATTCGCACACATAGTGCC-TT-
1 AAATTCGCACACATAGTGCCATTC
* * * *
81170391 AGTAATTCACATACATATTGACATTC
1 A--AATTCGCACACATAGTGCCATTC
* *
81170417 AAATCCGCACACATAGTGCCATAC
1 AAATTCGCACACATAGTGCCATTC
*
81170441 AAATTCGTACACATAGTGCCATTC
1 AAATTCGCACACATAGTGCCATTC
*
81170465 AAATTAGCACACATAGTGCCA
1 AAATTCGCACACATAGTGCCA
81170486 AAGTCATTTC
Statistics
Matches: 243, Mismatches: 50, Indels: 32
0.75 0.15 0.10
Matches are distributed among these distances:
22 3 0.01
23 3 0.01
24 226 0.93
25 8 0.03
26 3 0.01
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (24 bp):
AAATTCGCACACATAGTGCCATTC
Found at i:81170933 original size:16 final size:16
Alignment explanation
Indices: 81170912--81170943 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
81170902 ATTACTTCAA
81170912 ATAAACACACATATAT
1 ATAAACACACATATAT
*
81170928 ATAAACACATATATAT
1 ATAAACACACATATAT
81170944 TTTTGTACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (16 bp):
ATAAACACACATATAT
Found at i:81182135 original size:35 final size:36
Alignment explanation
Indices: 81182079--81182205 Score: 109
Period size: 37 Copynumber: 3.5 Consensus size: 36
81182069 ACATTGATAT
81182079 TCCAACCAAAACACACTAGATGCTCATA-GAGCTAA
1 TCCAACCAAAACACACTAGATGCTCATACGAGCTAA
* * *
81182114 TCCATCCAAAACACA-TCAGATGCTCATACGAGCCAG
1 TCCAACCAAAACACACT-AGATGCTCATACGAGCTAA
* * * * *
81182150 TCCACCCGATAGCACACCA-ATGGCTC-TGAAGAGCTAA
1 TCCAACC-AAAACACACTAGAT-GCTCAT-ACGAGCTAA
81182187 TCCAACCGAAAACACACTA
1 TCCAACC-AAAACACACTA
81182206 AAACAAGGAG
Statistics
Matches: 72, Mismatches: 14, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
34 1 0.01
35 25 0.35
36 14 0.19
37 32 0.44
ACGTcount: A:0.39, C:0.32, G:0.13, T:0.16
Consensus pattern (36 bp):
TCCAACCAAAACACACTAGATGCTCATACGAGCTAA
Found at i:81186516 original size:26 final size:25
Alignment explanation
Indices: 81186464--81186519 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
81186454 TCATAATTAT
* *
81186464 ATATATTATATAATAAGACCCATGC
1 ATATATTACATAATAAGACCCACGC
* *
81186489 ATATATGTACATAGTAAGATCCACGC
1 ATATAT-TACATAATAAGACCCACGC
81186515 ATATA
1 ATATA
81186520 ATATCCACGC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.43, C:0.16, G:0.11, T:0.30
Consensus pattern (25 bp):
ATATATTACATAATAAGACCCACGC
Found at i:81186527 original size:15 final size:15
Alignment explanation
Indices: 81186507--81186538 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
81186497 ACATAGTAAG
81186507 ATCCACGCATATAAT
1 ATCCACGCATATAAT
81186522 ATCCACGCATATAAT
1 ATCCACGCATATAAT
81186537 AT
1 AT
81186539 AATTTATGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.25, G:0.06, T:0.28
Consensus pattern (15 bp):
ATCCACGCATATAAT
Found at i:81189152 original size:79 final size:82
Alignment explanation
Indices: 81189041--81189225 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
81189031 GCTCCTCGTT
* * *
81189041 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCAGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTC-GGATCTTAACCC
* *
81189104 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
81189121 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCACACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCG
* *
81189184 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
81189201 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81189226 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:81189225 original size:40 final size:40
Alignment explanation
Indices: 81189041--81189225 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
81189031 GCTCCTCGTT
* * *
81189041 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * * *
81189081 CAAATGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
*
81189121 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACT-AGCA
* * *
81189160 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
81189201 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81189226 CATCATTCAA
Statistics
Matches: 122, Mismatches: 15, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:81195807 original size:79 final size:81
Alignment explanation
Indices: 81195705--81195889 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
81195695 GCTCCTCGTT
* * *
81195705 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCACACAAATGCCTTC-GGATCTTAACCC
*
81195768 GGATTTAGTAACTCA-CA
64 GGATATAGTAACTCAGCA
* **
81195785 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCACACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCACACAAATGCCTTCGGATCTTAACCCGG
* * *
81195849 ATATGGTCACTTAGCA
66 ATATAGTAACTCAGCA
81195865 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81195890 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 56 0.62
80 32 0.35
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCACACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTCAGCA
Found at i:81195889 original size:40 final size:40
Alignment explanation
Indices: 81195705--81195889 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
81195695 GCTCCTCGTT
* * *
81195705 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
* *
81195745 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
*
81195785 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCACA
* * * *
81195824 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTCA-CA
81195865 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81195890 CATCATTCAA
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 81 0.65
41 10 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
Found at i:81198552 original size:26 final size:26
Alignment explanation
Indices: 81198523--81198626 Score: 172
Period size: 26 Copynumber: 4.0 Consensus size: 26
81198513 ATTCCCATCT
* *
81198523 TGGAATATTTACCTAAACCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
81198549 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* *
81198575 TGGAATATTTACCTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
81198601 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
81198627 ATTTGTACCA
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.34
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Found at i:81198580 original size:52 final size:52
Alignment explanation
Indices: 81198523--81198626 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
81198513 ATTCCCATCT
81198523 TGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCA
1 TGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCA
*
81198575 TGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCA
1 TGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCA
81198627 ATTTGTACCA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.34
Consensus pattern (52 bp):
TGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCA
Found at i:81202004 original size:18 final size:18
Alignment explanation
Indices: 81201981--81202016 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
81201971 ACTAAAGTAA
81201981 CCTTAATATATTTATATC
1 CCTTAATATATTTATATC
81201999 CCTTAATATATTTATATC
1 CCTTAATATATTTATATC
81202017 AAAACATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50
Consensus pattern (18 bp):
CCTTAATATATTTATATC
Found at i:81202242 original size:13 final size:13
Alignment explanation
Indices: 81202224--81202248 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81202214 GATATAAATT
81202224 CACACAAAATAAA
1 CACACAAAATAAA
81202237 CACACAAAATAA
1 CACACAAAATAA
81202249 TTTTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:81203562 original size:45 final size:45
Alignment explanation
Indices: 81203498--81203587 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
81203488 CTCCCTCTGA
81203498 TATACTTGTTCAATCAAAAAAATTCCCTTCACACACAATTACAGT
1 TATACTTGTTCAATCAAAAAAATTCCCTTCACACACAATTACAGT
*
81203543 TATACTTGTTCAATCAAAAAAATTCCCTTCATACACAATTACAGT
1 TATACTTGTTCAATCAAAAAAATTCCCTTCACACACAATTACAGT
81203588 CATATAACTT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.40, C:0.23, G:0.04, T:0.32
Consensus pattern (45 bp):
TATACTTGTTCAATCAAAAAAATTCCCTTCACACACAATTACAGT
Found at i:81205168 original size:18 final size:19
Alignment explanation
Indices: 81205147--81205198 Score: 72
Period size: 18 Copynumber: 2.8 Consensus size: 19
81205137 TAACAGTCAG
*
81205147 TTATTCAGTAACGA-TAAA
1 TTATTCAGTAACAATTAAA
*
81205165 TTATTCAGTAA-AATTCAA
1 TTATTCAGTAACAATTAAA
81205183 TTATTCAGTAACAATT
1 TTATTCAGTAACAATT
81205199 TTTTTTTACG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
17 1 0.03
18 25 0.83
19 4 0.13
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (19 bp):
TTATTCAGTAACAATTAAA
Found at i:81205254 original size:18 final size:19
Alignment explanation
Indices: 81205209--81205267 Score: 70
Period size: 18 Copynumber: 3.3 Consensus size: 19
81205199 TTTTTTTACG
*
81205209 CAGT-AGCAGTCAGTTATA
1 CAGTAAGCAGTCAGTTATT
81205227 CAGTAA-CAGTCAGTTATT
1 CAGTAAGCAGTCAGTTATT
* *
81205245 CAG-AAGCAGTTAATTATT
1 CAGTAAGCAGTCAGTTATT
81205263 CAGTA
1 CAGTA
81205268 TCTTTAATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
17 2 0.06
18 31 0.89
19 2 0.06
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (19 bp):
CAGTAAGCAGTCAGTTATT
Found at i:81206520 original size:4 final size:4
Alignment explanation
Indices: 81206511--81206535 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
81206501 AATTTTCCCT
81206511 TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC T
81206536 CGTCTGTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:81206617 original size:3 final size:3
Alignment explanation
Indices: 81206609--81206653 Score: 65
Period size: 3 Copynumber: 15.0 Consensus size: 3
81206599 TGTTCATTAA
*
81206609 ATT ATT ATT ATT ATT ATT TTT ATT ATT ATT ATT A-T ATAT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT
81206654 TATACTTAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
2 2 0.05
3 33 0.87
4 3 0.08
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:81206945 original size:3 final size:3
Alignment explanation
Indices: 81206937--81206997 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
81206927 TAAATATCTT
81206937 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
81206985 ATA ATA ATA ATA A
1 ATA ATA ATA ATA A
81206998 CAACAACAAC
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:81208612 original size:46 final size:45
Alignment explanation
Indices: 81208468--81208635 Score: 178
Period size: 46 Copynumber: 3.6 Consensus size: 45
81208458 TGTGTGAGCT
* * * *
81208468 AGTGCAAGACATGTCTAGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGA-AGCC
* * *
81208514 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-AGCGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAAGC-C
*
81208561 TAGTGTAGGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AAGCC
*
81208608 AGTGTAAGACATGTCTGGGACATACATC
1 AGTGTAAGACATGTCTGGGACATGCATC
81208636 AGTTATGAAA
Statistics
Matches: 102, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
46 51 0.50
47 29 0.28
48 21 0.21
49 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.21
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAAGCC
Found at i:81220879 original size:42 final size:41
Alignment explanation
Indices: 81220771--81220916 Score: 134
Period size: 43 Copynumber: 3.4 Consensus size: 41
81220761 TTTTGATATG
* * *
81220771 TGATTTCGTGTAAGACCACT-TCTGGGACGTTGGAATCG-ATT
1 TGATTTCATGTAAGACC-CTGTCTGGGAC-ATGGCATCGTATT
* *
81220812 TGAAATTTACATGTAAGGCCATGTCTGGGACATCGGCATCGTATT
1 TG--ATTT-CATGTAAGACCCTGTCTGGGACAT-GGCATCGTATT
* *
81220857 TGATTTCGTGTAAGACCCTGTCTGGGATAGTGGCATCGATATT
1 TGATTTCATGTAAGACCCTGTCTGGGACA-TGGCATCG-TATT
*
81220900 TGATTACATGTAAGACC
1 TGATTTCATGTAAGACC
81220917 ACATTTGGGA
Statistics
Matches: 86, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
41 2 0.02
42 26 0.30
43 30 0.35
44 23 0.27
45 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (41 bp):
TGATTTCATGTAAGACCCTGTCTGGGACATGGCATCGTATT
Found at i:81220914 original size:43 final size:42
Alignment explanation
Indices: 81220779--81220917 Score: 131
Period size: 42 Copynumber: 3.2 Consensus size: 42
81220769 TGTGATTTCG
* * *
81220779 TGTAAGACCACT-TCTGGGACGTTGGAATCG-ATTTGAAATTTACA
1 TGTAAGACCA-TGTCTGGGACATCGGCATCGTATTTG--A-TTACA
* * *
81220823 TGTAAGGCCATGTCTGGGACATCGGCATCGTATTTGATTTCG
1 TGTAAGACCATGTCTGGGACATCGGCATCGTATTTGATTACA
* *
81220865 TGTAAGACCCTGTCTGGGATAGT-GGCATCGATATTTGATTACA
1 TGTAAGACCATGTCTGGGACA-TCGGCATCG-TATTTGATTACA
81220908 TGTAAGACCA
1 TGTAAGACCA
81220918 CATTTGGGAT
Statistics
Matches: 79, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
42 28 0.35
43 22 0.28
44 24 0.30
45 5 0.06
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATCGGCATCGTATTTGATTACA
Found at i:81222715 original size:103 final size:101
Alignment explanation
Indices: 81222536--81223028 Score: 544
Period size: 101 Copynumber: 5.0 Consensus size: 101
81222526 CATTCAGACG
* * ** * *
81222536 TAAGACCATGGTTAGACCATGGAAGTGTATATATATATATTACCATAGCTGGGCTATGGCCTTCT
1 TAAGACCATGGTTGGACCATGGCA-TGT-TATATATATAAGACCATAGTTGGGCTATGGCATTCT
* *
81222601 GATGGTAAGACCATAATCGGGTTATGGCACTATGAGCA
64 GATGGTAAGACCATAACCGGGTTATGGCACTATGAACA
* * * * *
81222639 TAAGACCATGGTTGGACCATTGTATTGTATATATATATAATAGCATAGTTGGGCTATGGCATTTT
1 TAAGACCATGGTTGGACCATGGCA-TGT-TATATATATAAGACCATAGTTGGGCTATGGCATTCT
* * * *
81222704 GATGGTAAGACCATAACTGAGTTATGACATTATGAACA
64 GATGGTAAGACCATAACCGGGTTATGGCACTATGAACA
* * * * * * *
81222742 TAAGATCATTGTTAGACCATGGCAATG-TATATATACAAGACCATAGCTGGGCTATGGCGTTCTA
1 TAAGACCATGGTTGGACCATGGC-ATGTTATATATATAAGACCATAGTTGGGCTATGGCATTCTG
* *
81222806 ATGTTAACACCATAACCGGGTTATGGCACTATGAACA
65 ATGGTAAGACCATAACCGGGTTATGGCACTATGAACA
*
81222843 TAAGACCATGGTTGGACCATGGCA-GTGTATATATATAAGACCATAGTTGGGCTATGGCATTCTA
1 TAAGACCATGGTTGGACCATGGCATGT-TATATATATAAGACCATAGTTGGGCTATGGCATTCTG
* * * *
81222907 ATGGTAATACCATAACCGAGTTATGGCAGTATGAACG
65 ATGGTAAGACCATAACCGGGTTATGGCACTATGAACA
* *
81222944 TAAGACCA----TGG--CA--G--TG-TATATATATAAGACCATAGTTAGGCTATGGCATTCTGG
1 TAAGACCATGGTTGGACCATGGCATGTTATATATATAAGACCATAGTTGGGCTATGGCATTCTGA
81222998 TGGTAAGACCATAACCGGGTTATGGCACTAT
66 TGGTAAGACCATAACCGGGTTATGGCACTAT
81223029 AAACGTGACC
Statistics
Matches: 336, Mismatches: 50, Indels: 21
0.83 0.12 0.05
Matches are distributed among these distances:
90 63 0.19
92 1 0.00
93 1 0.00
95 2 0.01
97 3 0.01
99 1 0.00
100 1 0.00
101 155 0.46
103 108 0.32
104 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGCATGTTATATATATAAGACCATAGTTGGGCTATGGCATTCTGA
TGGTAAGACCATAACCGGGTTATGGCACTATGAACA
Found at i:81223010 original size:90 final size:88
Alignment explanation
Indices: 81222857--81223041 Score: 289
Period size: 90 Copynumber: 2.1 Consensus size: 88
81222847 ACCATGGTTG
* *
81222857 GACCATGGCAGTGTATATATATAAGACCATAGTTGGGCTATGGCATTCTAATGGTAATACCATAA
1 GACCATGGCAGTGTATATATATAAGACCATAGTTAGGCTATGGCATTCTAATGGTAAGACCATAA
* *
81222922 CCGAGTTATGGCAGTATGAACGT
66 CCGAGTTATGGCACTATAAACGT
**
81222945 AAGACCATGGCAGTGTATATATATAAGACCATAGTTAGGCTATGGCATTCTGGTGGTAAGACCAT
1 --GACCATGGCAGTGTATATATATAAGACCATAGTTAGGCTATGGCATTCTAATGGTAAGACCAT
*
81223010 AACCGGGTTATGGCACTATAAACGT
64 AACCGAGTTATGGCACTATAAACGT
81223035 GACCATG
1 GACCATG
81223042 CCAGGGCCAT
Statistics
Matches: 88, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
88 7 0.08
90 81 0.92
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (88 bp):
GACCATGGCAGTGTATATATATAAGACCATAGTTAGGCTATGGCATTCTAATGGTAAGACCATAA
CCGAGTTATGGCACTATAAACGT
Found at i:81226697 original size:51 final size:51
Alignment explanation
Indices: 81226603--81226714 Score: 125
Period size: 51 Copynumber: 2.2 Consensus size: 51
81226593 CTATCTTATA
* * * ** *
81226603 ACATGTAACACATCCATAATGAACTCGGACCTCTCAATGAGCTCGGATGCT
1 ACATGTATCACATCCATAATGAACTCGGACCACCCAACAAGCTCAGATGCT
* * * *
81226654 ACATGTATCGCATCCATTATGAACTTGGACCACCCAACAAGCTCAGATGTT
1 ACATGTATCACATCCATAATGAACTCGGACCACCCAACAAGCTCAGATGCT
*
81226705 ACATATATCA
1 ACATGTATCA
81226715 TGACCTTGCA
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (51 bp):
ACATGTATCACATCCATAATGAACTCGGACCACCCAACAAGCTCAGATGCT
Found at i:81226775 original size:43 final size:43
Alignment explanation
Indices: 81226682--81226787 Score: 108
Period size: 43 Copynumber: 2.5 Consensus size: 43
81226672 ATGAACTTGG
* * * * *
81226682 ACCACCCAACAAGCTCAGATGT-T-ACATATATCATGACCTTGC
1 ACCACTCAACAAGCTCGGAT-TCTCACATATATCACGAACTCGC
* *
81226724 ACCACTCAACAAGTTCGGATTCTCACATATATCACGAACTCGG
1 ACCACTCAACAAGCTCGGATTCTCACATATATCACGAACTCGC
* *
81226767 ACCGCTCAACGAGCTCGGATT
1 ACCACTCAACAAGCTCGGATT
81226788 TCTTAATTCC
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
41 1 0.02
42 18 0.35
43 33 0.63
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.23
Consensus pattern (43 bp):
ACCACTCAACAAGCTCGGATTCTCACATATATCACGAACTCGC
Found at i:81229473 original size:6 final size:7
Alignment explanation
Indices: 81229455--81229497 Score: 51
Period size: 6 Copynumber: 6.9 Consensus size: 7
81229445 TGTAGATGAA
81229455 TCATTTC
1 TCATTTC
81229462 TCATTT-
1 TCATTTC
81229468 TCATTTC
1 TCATTTC
81229475 T-ATTTC
1 TCATTTC
81229481 T-ATTTC
1 TCATTTC
81229487 -CATTTC
1 TCATTTC
81229493 -CATTT
1 TCATTT
81229498 TGAGAAAACC
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
6 27 0.79
7 7 0.21
ACGTcount: A:0.16, C:0.23, G:0.00, T:0.60
Consensus pattern (7 bp):
TCATTTC
Found at i:81229490 original size:18 final size:19
Alignment explanation
Indices: 81229456--81229497 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
81229446 GTAGATGAAT
*
81229456 CATTTCTCATTTTCATTTC
1 CATTTCTCATTTCCATTTC
*
81229475 TATTTCT-ATTTCCATTTC
1 CATTTCTCATTTCCATTTC
81229493 CATTT
1 CATTT
81229498 TGAGAAAACC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.17, C:0.24, G:0.00, T:0.60
Consensus pattern (19 bp):
CATTTCTCATTTCCATTTC
Found at i:81232254 original size:50 final size:49
Alignment explanation
Indices: 81232135--81232322 Score: 189
Period size: 50 Copynumber: 3.8 Consensus size: 49
81232125 AGCCAAAGCT
* * * * * * **
81232135 ATCTGGTACGCATAGTAGCCTGGACATAGTACTACACATGCGACCAATT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACC
*
81232184 ATCTGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AACC
* * **
81232234 ATCTGTTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-CC
* * *
81232285 ATCGGGTACGA-ATAGTAGCCTGCACATAGTACTACACA
1 ATCTGGTAC-ACGTAGTAGCCTGCACTTAGTACTACACA
81232323 TGCGACCTCA
Statistics
Matches: 117, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
49 38 0.32
50 45 0.38
51 33 0.28
52 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.26
Consensus pattern (49 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACC
Found at i:81232330 original size:101 final size:99
Alignment explanation
Indices: 81232147--81232330 Score: 244
Period size: 101 Copynumber: 1.8 Consensus size: 99
81232137 CTGGTACGCA
* * * * *
81232147 TAGTAGCCTGGACATAGTACTACACATGCGACCAATTATCTGGTACATGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACATAGTACTACACACGCGACCAATTATCGGGTACATATAGTAGCCTGCACATA
*
81232212 GTACTACACACGTGACCTAACCATCTGTTACACG
66 GTACTACACACGCGACCTAACCATCTGTTACACG
* * *
81232246 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGA-ATAGTAGCCTGCAC
1 TAGTAGCCTGCACATAGTACTACACACGCGA-CCAA-TTATCGGGTAC-ATATAGTAGCCTGCAC
*
81232310 ATAGTACTACACATGCGACCT
63 ATAGTACTACACACGCGACCT
81232331 CACAAAAGGT
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
99 27 0.38
100 3 0.04
101 41 0.57
102 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACATAGTACTACACACGCGACCAATTATCGGGTACATATAGTAGCCTGCACATA
GTACTACACACGCGACCTAACCATCTGTTACACG
Found at i:81243854 original size:15 final size:15
Alignment explanation
Indices: 81243802--81243855 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
81243792 TAAAGATAAC
*
81243802 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
*
81243816 AAGAAATCCA-AGATA
1 AAGAAACCCAGA-ATA
81243831 GAA-AAACCCAGAATA
1 -AAGAAACCCAGAATA
81243846 AAGAAACCCA
1 AAGAAACCCA
81243856 AGATACGATA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
14 11 0.33
15 19 0.58
16 3 0.09
ACGTcount: A:0.61, C:0.19, G:0.13, T:0.07
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:81246977 original size:50 final size:49
Alignment explanation
Indices: 81246867--81246996 Score: 179
Period size: 50 Copynumber: 2.6 Consensus size: 49
81246857 CTGGTACGCA
* * * ** *
81246867 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
*
81246916 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCGATACACG
*
81246966 TAGTAGCCTGCACTTAGTACTACATACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
81246997 TCGAAGTTAT
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
49 30 0.42
50 42 0.58
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
Found at i:81247050 original size:101 final size:99
Alignment explanation
Indices: 81246867--81247050 Score: 242
Period size: 101 Copynumber: 1.8 Consensus size: 99
81246857 CTGGTACGCA
* * *
81246867 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACATAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACATA
*
81246932 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* * * * * *
81246966 TAGTAGCCTGCACTTAGTACTACATACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACA
1 TAGTAGCCTGCACATAGTACTACACACGCGA-CCAA-TTATCCGGTACACATAGTAGCCTGCACA
* *
81247031 TGGTACTACACATGCGACCT
64 TAGTACTACACACGCGACCT
81247051 CACAATAGGT
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
99 27 0.38
100 3 0.04
101 41 0.58
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (99 bp):
TAGTAGCCTGCACATAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACATA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:81252119 original size:12 final size:13
Alignment explanation
Indices: 81252096--81252124 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
81252086 TTTTATATTT
81252096 TTTTGAATTTTGA
1 TTTTGAATTTTGA
81252109 TTTTG-ATTTTGA
1 TTTTGAATTTTGA
81252121 TTTT
1 TTTT
81252125 TTATTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.17, C:0.00, G:0.14, T:0.69
Consensus pattern (13 bp):
TTTTGAATTTTGA
Found at i:81258172 original size:29 final size:30
Alignment explanation
Indices: 81258098--81258172 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 30
81258088 CGTTTAATTA
*
81258098 ATTTTTT-AAAATTTTAAAATATTAAAAAT
1 ATTTTTTAAAAATTTTTAAATATTAAAAAT
* * * * *
81258127 ATTTTTTAATAGTTTTTAATTTTTAAAAGT
1 ATTTTTTAAAAATTTTTAAATATTAAAAAT
81258157 -TTTTTTAAAAATTTTT
1 ATTTTTTAAAAATTTTT
81258173 TTCGAATTTA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
29 21 0.57
30 16 0.43
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (30 bp):
ATTTTTTAAAAATTTTTAAATATTAAAAAT
Found at i:81258467 original size:21 final size:21
Alignment explanation
Indices: 81258421--81258467 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
81258411 AATTCATAAT
81258421 TTAT-TTTTAAAAAATATGAA
1 TTATATTTTAAAAAATATGAA
** *
81258441 AAATATTTTAAAAAATATTAA
1 TTATATTTTAAAAAATATGAA
81258462 TTATAT
1 TTATAT
81258468 AAAACTTCAT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (21 bp):
TTATATTTTAAAAAATATGAA
Found at i:81268562 original size:20 final size:21
Alignment explanation
Indices: 81268529--81268568 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
81268519 AATGAAATAG
81268529 ATTTTAGCAAAATTA-AACAC
1 ATTTTAGCAAAATTATAACAC
81268549 ATTTT-GCAACAATTATAACA
1 ATTTTAGCAA-AATTATAACA
81268569 TAAATAAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 10 0.56
21 4 0.22
ACGTcount: A:0.47, C:0.15, G:0.05, T:0.33
Consensus pattern (21 bp):
ATTTTAGCAAAATTATAACAC
Found at i:81270141 original size:48 final size:48
Alignment explanation
Indices: 81270089--81270181 Score: 159
Period size: 48 Copynumber: 1.9 Consensus size: 48
81270079 CCAATGTACC
* *
81270089 TAATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATT
1 TAATTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGTATT
*
81270137 TAATTTATATTACAAAGTTTGTTCCAAGTTTTAGTATTGTAATGT
1 TAATTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGT
81270182 TGTAATGTTG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.31, C:0.06, G:0.12, T:0.51
Consensus pattern (48 bp):
TAATTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGTATT
Found at i:81270685 original size:6 final size:6
Alignment explanation
Indices: 81270674--81270744 Score: 70
Period size: 6 Copynumber: 11.8 Consensus size: 6
81270664 GCGACCGTTT
* * * * * *
81270674 GGGCTC GGGCTC AGGCTC AGGCTC GGGCTC GGGCTC GAGCTT GAGCTT
1 GGGCTC GGGCTC GGGCTC GGGCTC GGGCTC GGGCTC GGGCTC GGGCTC
**
81270722 GGGCTC AAGCTC GGGCTC GGGCT
1 GGGCTC GGGCTC GGGCTC GGGCT
81270745 TTGGCTCTGG
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 55 1.00
ACGTcount: A:0.08, C:0.30, G:0.42, T:0.20
Consensus pattern (6 bp):
GGGCTC
Found at i:81270743 original size:18 final size:18
Alignment explanation
Indices: 81270676--81270744 Score: 84
Period size: 18 Copynumber: 3.8 Consensus size: 18
81270666 GACCGTTTGG
* *
81270676 GCTCGGGCTCAGGCTCAG
1 GCTCGGGCTCGGGCTCAA
*
81270694 GCTCGGGCTCGGGCTCGA
1 GCTCGGGCTCGGGCTCAA
* * *
81270712 GCTTGAGCTTGGGCTCAA
1 GCTCGGGCTCGGGCTCAA
81270730 GCTCGGGCTCGGGCT
1 GCTCGGGCTCGGGCT
81270745 TTGGCTCTGG
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 41 1.00
ACGTcount: A:0.09, C:0.30, G:0.41, T:0.20
Consensus pattern (18 bp):
GCTCGGGCTCGGGCTCAA
Found at i:81271417 original size:14 final size:14
Alignment explanation
Indices: 81271398--81271431 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
81271388 AAATTACATG
81271398 TTAGAATAGTATCA
1 TTAGAATAGTATCA
81271412 TTAGAATAGTATCA
1 TTAGAATAGTATCA
81271426 TTAGAA
1 TTAGAA
81271432 AAAAAATGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.44, C:0.06, G:0.15, T:0.35
Consensus pattern (14 bp):
TTAGAATAGTATCA
Found at i:81273216 original size:20 final size:20
Alignment explanation
Indices: 81273191--81273265 Score: 53
Period size: 20 Copynumber: 3.5 Consensus size: 20
81273181 TATTTGGGCA
81273191 TCCGAGCTCGTTGAGTCGAG
1 TCCGAGCTCGTTGAGTCGAG
* *
81273211 TCCGAGTTCACTT-ATGGATGCGAATG
1 TCCGAGCTC-GTTGA--G-T-CG-A-G
*
81273237 TCCGAGCTCGTTGAGTTGAG
1 TCCGAGCTCGTTGAGTCGAG
81273257 TCCGAGCTC
1 TCCGAGCTC
81273266 AGTTATGGAT
Statistics
Matches: 42, Mismatches: 5, Indels: 16
0.67 0.08 0.25
Matches are distributed among these distances:
20 19 0.45
21 3 0.07
22 2 0.05
23 2 0.05
24 3 0.07
25 3 0.07
26 10 0.24
ACGTcount: A:0.17, C:0.24, G:0.31, T:0.28
Consensus pattern (20 bp):
TCCGAGCTCGTTGAGTCGAG
Found at i:81273243 original size:46 final size:46
Alignment explanation
Indices: 81273191--81273319 Score: 188
Period size: 46 Copynumber: 2.8 Consensus size: 46
81273181 TATTTGGGCA
* * *
81273191 TCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
81273237 TCCGAGCTCGTTGAGTTGAGTCCGAGCTCAGTTATGGATGCAAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
81273283 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TC-CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81273320 GCGGGTTACA
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
45 1 0.01
46 73 0.99
ACGTcount: A:0.19, C:0.22, G:0.31, T:0.29
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:81275342 original size:16 final size:16
Alignment explanation
Indices: 81275323--81275354 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
81275313 TATAACAAAA
81275323 ACATAACATAAACTAT
1 ACATAACATAAACTAT
81275339 ACATAACATAAACTAT
1 ACATAACATAAACTAT
81275355 CTCAACATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (16 bp):
ACATAACATAAACTAT
Found at i:81277005 original size:23 final size:23
Alignment explanation
Indices: 81276979--81277027 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
81276969 TATTTTTTTC
* *
81276979 TTATTTTA-TTTTGTTTATTTATT
1 TTATTTAATTTTTG-TTATTAATT
81277002 TTATTTAATTTTTGTTATTAATT
1 TTATTTAATTTTTGTTATTAATT
81277025 TTA
1 TTA
81277028 AAAATTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 18 0.78
24 5 0.22
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.73
Consensus pattern (23 bp):
TTATTTAATTTTTGTTATTAATT
Found at i:81277104 original size:23 final size:26
Alignment explanation
Indices: 81277046--81277105 Score: 76
Period size: 23 Copynumber: 2.5 Consensus size: 26
81277036 GAAATGTATA
*
81277046 TTTAAATTTTTTTATAATATATATTT
1 TTTAAATTATTTTATAATATATATTT
81277072 TTTAAA--ATTTTA-AATAT-TA-TT
1 TTTAAATTATTTTATAATATATATTT
81277093 TTTAAATTATTTT
1 TTTAAATTATTTT
81277106 TTAAAATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 8 0.26
22 2 0.06
23 10 0.32
24 5 0.16
26 6 0.19
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (26 bp):
TTTAAATTATTTTATAATATATATTT
Found at i:81277109 original size:33 final size:36
Alignment explanation
Indices: 81277046--81277127 Score: 120
Period size: 33 Copynumber: 2.4 Consensus size: 36
81277036 GAAATGTATA
81277046 TTTAAAT-TT-TTTTATAATATATATTTTTTAAAAT
1 TTTAAATATTATTTTATAATATATATTTTTTAAAAT
81277080 TTTAAATATTATTTT-TAA-AT-TATTTTTTAAAAT
1 TTTAAATATTATTTTATAATATATATTTTTTAAAAT
81277113 TTTAAATATATATTT
1 TTTAAATAT-TATTT
81277128 CTGAAATATG
Statistics
Matches: 45, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
33 22 0.49
34 14 0.31
35 5 0.11
36 4 0.09
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (36 bp):
TTTAAATATTATTTTATAATATATATTTTTTAAAAT
Found at i:81277150 original size:23 final size:22
Alignment explanation
Indices: 81277130--81277173 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
81277120 ATATATTTCT
81277130 GAAATATGATCTTTCAAATTTA
1 GAAATATGATCTTTCAAATTTA
*
81277152 GACATATGATCTTTCAAATTTA
1 GAAATATGATCTTTCAAATTTA
81277174 TTATTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.41
Consensus pattern (22 bp):
GAAATATGATCTTTCAAATTTA
Found at i:81277249 original size:13 final size:13
Alignment explanation
Indices: 81277216--81277245 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
81277206 TTTAAACATT
81277216 TAAAATTTTTAAA
1 TAAAATTTTTAAA
81277229 TAAAATTTTT-AA
1 TAAAATTTTTAAA
81277241 TAAAA
1 TAAAA
81277246 ATTTAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.41
13 10 0.59
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (13 bp):
TAAAATTTTTAAA
Found at i:81277261 original size:10 final size:10
Alignment explanation
Indices: 81277230--81277285 Score: 58
Period size: 10 Copynumber: 5.5 Consensus size: 10
81277220 ATTTTTAAAT
*
81277230 AAAATTTTTA
1 AAAATATTTA
*
81277240 ATAAAAATTTA
1 A-AAATATTTA
81277251 AAAATATTTA
1 AAAATATTTA
* *
81277261 AACATCTTTA
1 AAAATATTTA
*
81277271 AAAATAATTA
1 AAAATATTTA
81277281 AAAAT
1 AAAAT
81277286 GATAATTTAA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
10 29 0.78
11 8 0.22
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.38
Consensus pattern (10 bp):
AAAATATTTA
Found at i:81277377 original size:13 final size:13
Alignment explanation
Indices: 81277341--81277378 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
81277331 TTTAAACCTT
81277341 TTTAAAAATTTT-
1 TTTAAAAATTTTA
* *
81277353 TATAACAATTTTA
1 TTTAAAAATTTTA
81277366 TTTAAAAATTTTA
1 TTTAAAAATTTTA
81277379 ATTTTTAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (13 bp):
TTTAAAAATTTTA
Found at i:81277413 original size:20 final size:21
Alignment explanation
Indices: 81277388--81277450 Score: 74
Period size: 20 Copynumber: 3.0 Consensus size: 21
81277378 AATTTTTAAA
81277388 TAATATTAAAAAAAT-ATATT
1 TAATATTAAAAAAATAATATT
*
81277408 TAATATTTAAAAAATAATATT
1 TAATATTAAAAAAATAATATT
* *
81277429 TAAAATTTAGAAAAATTAATAT
1 TAATA-TTA-AAAAAATAATAT
81277451 CAAAAATATA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
20 14 0.39
21 9 0.25
22 2 0.06
23 11 0.31
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.40
Consensus pattern (21 bp):
TAATATTAAAAAAATAATATT
Found at i:81277419 original size:21 final size:22
Alignment explanation
Indices: 81277388--81277450 Score: 78
Period size: 21 Copynumber: 3.0 Consensus size: 22
81277378 AATTTTTAAA
81277388 TAATA-TTAAAAAAAT-ATATT
1 TAATATTTAAAAAAATAATATT
81277408 TAATATTT-AAAAAATAATATT
1 TAATATTTAAAAAAATAATATT
* *
81277429 TAAAATTTAGAAAAATTAATAT
1 TAATATTTA-AAAAAATAATAT
81277451 CAAAAATATA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.32
21 14 0.38
23 11 0.30
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.40
Consensus pattern (22 bp):
TAATATTTAAAAAAATAATATT
Found at i:81277456 original size:23 final size:21
Alignment explanation
Indices: 81277412--81277457 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 21
81277402 TATATTTAAT
**
81277412 ATTTAAAAAATAATATTTAAA
1 ATTTAAAAAATAATATCAAAA
81277433 ATTTAGAAAAATTAATATCAAAA
1 ATTTA-AAAAA-TAATATCAAAA
81277456 AT
1 AT
81277458 ATATTTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 5 0.24
22 5 0.24
23 11 0.52
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (21 bp):
ATTTAAAAAATAATATCAAAA
Found at i:81277467 original size:36 final size:36
Alignment explanation
Indices: 81277417--81277516 Score: 132
Period size: 36 Copynumber: 2.8 Consensus size: 36
81277407 TTAATATTTA
*
81277417 AAAAATA-ATATTTAAAATTTAGAAAAATTAATATC
1 AAAAATATATATTTAAAATTTAAAAAAATTAATATC
* * *
81277452 AAAAATATATTTTTAAAATTTATAAGAAA-TAATTTC
1 AAAAATATATATTTAAAATTTA-AAAAAATTAATATC
*
81277488 AAATATATATATTTAAAATTTAAAAAAAT
1 AAAAATATATATTTAAAATTTAAAAAAAT
81277517 AATTTAAAAT
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
35 12 0.22
36 39 0.71
37 4 0.07
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (36 bp):
AAAAATATATATTTAAAATTTAAAAAAATTAATATC
Found at i:81277523 original size:20 final size:20
Alignment explanation
Indices: 81277498--81277537 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
81277488 AAATATATAT
81277498 ATTTAAAATTTAAAAAAATA
1 ATTTAAAATTTAAAAAAATA
*
81277518 ATTTAAAATTTTAAAAAATA
1 ATTTAAAATTTAAAAAAATA
81277538 TATATTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
ATTTAAAATTTAAAAAAATA
Found at i:81277639 original size:19 final size:18
Alignment explanation
Indices: 81277617--81277681 Score: 69
Period size: 19 Copynumber: 3.4 Consensus size: 18
81277607 AGAAAAATAT
*
81277617 AAAACTTAAAAAAAAGAA
1 AAAAATTAAAAAAAAGAA
81277635 AAAAATTAAAGAAAAAGACA
1 AAAAATTAAA-AAAAAGA-A
*
81277655 AAAGA-TATAAAAAAAGTAA
1 AAAAATTA-AAAAAAAG-AA
81277674 AAAAATTA
1 AAAAATTA
81277682 GAAGTAGCGT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
18 9 0.23
19 20 0.51
20 10 0.26
ACGTcount: A:0.75, C:0.03, G:0.08, T:0.14
Consensus pattern (18 bp):
AAAAATTAAAAAAAAGAA
Found at i:81277647 original size:37 final size:39
Alignment explanation
Indices: 81277585--81277681 Score: 94
Period size: 37 Copynumber: 2.5 Consensus size: 39
81277575 TTTAAAATTA
* * * *
81277585 ATAAAATAAA-TAAAATAAAAT-AAGAAAAATATAAAACTT
1 ATAAAA-AAAGTAAAA-AAATTAAAGAAAAAGACAAAACAT
* *
81277624 AAAAAAAA-G-AAAAAAATTAAAGAAAAAGACAAAAGAT
1 ATAAAAAAAGTAAAAAAATTAAAGAAAAAGACAAAACAT
81277661 ATAAAAAAAGTAAAAAAATTA
1 ATAAAAAAAGTAAAAAAATTA
81277682 GAAGTAGCGT
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
36 4 0.09
37 25 0.53
38 3 0.06
39 15 0.32
ACGTcount: A:0.75, C:0.02, G:0.06, T:0.16
Consensus pattern (39 bp):
ATAAAAAAAGTAAAAAAATTAAAGAAAAAGACAAAACAT
Found at i:81281455 original size:20 final size:20
Alignment explanation
Indices: 81281430--81281472 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
81281420 TATTAGAATA
81281430 AGGGAATTATTTTCCCAGTT
1 AGGGAATTATTTTCCCAGTT
81281450 AGGGAATTATTTTCCCAGTT
1 AGGGAATTATTTTCCCAGTT
81281470 AGG
1 AGG
81281473 TTATGACTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (20 bp):
AGGGAATTATTTTCCCAGTT
Found at i:81283044 original size:32 final size:32
Alignment explanation
Indices: 81283008--81283071 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
81282998 AGAATGATTA
81283008 GCAATGCTAAAGAATCTGTGGAATTTACTTTC
1 GCAATGCTAAAGAATCTGTGGAATTTACTTTC
81283040 GCAATGCTAAAGAATCTGTGGAATTTACTTTC
1 GCAATGCTAAAGAATCTGTGGAATTTACTTTC
81283072 TTGATGACAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (32 bp):
GCAATGCTAAAGAATCTGTGGAATTTACTTTC
Found at i:81291519 original size:6 final size:6
Alignment explanation
Indices: 81291510--81291534 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
81291500 GAAAAGGAAA
81291510 AAAAAC AAAAAC AAAAAC AAAAAC A
1 AAAAAC AAAAAC AAAAAC AAAAAC A
81291535 GAAAGAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:81298870 original size:29 final size:29
Alignment explanation
Indices: 81298828--81298887 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
81298818 TCCAACATAT
81298828 ATAAGCCATCATGCAAGTTACCATTGCCA
1 ATAAGCCATCATGCAAGTTACCATTGCCA
81298857 ATAAGCCATCATGCAAGTTACCATTGCCA
1 ATAAGCCATCATGCAAGTTACCATTGCCA
81298886 AT
1 AT
81298888 CTTCCTTCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.25
Consensus pattern (29 bp):
ATAAGCCATCATGCAAGTTACCATTGCCA
Found at i:81299866 original size:29 final size:29
Alignment explanation
Indices: 81299833--81299892 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
81299823 CTTGAGAAGA
81299833 CTGGATTGCTAAAGCATTCTTCGGAGCAT
1 CTGGATTGCTAAAGCATTCTTCGGAGCAT
81299862 CTGGATTGCTAAAGCATTCTTCGGAGCAT
1 CTGGATTGCTAAAGCATTCTTCGGAGCAT
81299891 CT
1 CT
81299893 AACACGTGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (29 bp):
CTGGATTGCTAAAGCATTCTTCGGAGCAT
Found at i:81311456 original size:46 final size:46
Alignment explanation
Indices: 81311321--81311483 Score: 174
Period size: 46 Copynumber: 3.5 Consensus size: 46
81311311 GTGCCGCTGC
*
81311321 CATGTCCCAGACATGGTCTTACACT-G-ACACATCTCATAGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCACTCATCTCATA-CCGATG
* * * **
81311366 CATGTCCCAGACAT-GTTTTACACTAGC-TTACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCACT-CATCTC-ATACCGATG
* *
81311412 CATATCTCAGACAT-GTCTTACACTAGCACTCATCTCAATACCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCACTCATCTC-ATACCGATG
81311458 CCATGTCCCAGACATGGTCTTACACT
1 -CATGTCCCAGACATGGTCTTACACT
81311484 GGCTCTAATA
Statistics
Matches: 95, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
44 9 0.09
45 15 0.16
46 47 0.49
47 14 0.15
48 10 0.11
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTAGCACTCATCTCATACCGATG
Found at i:81311508 original size:94 final size:94
Alignment explanation
Indices: 81311269--81311537 Score: 291
Period size: 94 Copynumber: 2.9 Consensus size: 94
81311259 AGACATCGAC
* * * *
81311269 GCCATGTCCCAGACATGGTCTTACACAAGTTCTAGTATATCTGTGCCGCTGCCATGTCCCAGACA
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTAGTA-ATGTG-GCCGATG-CATGTCCCAGACA
81311334 TGGTCTTACACT-G-ACACATCTCATAGCCGAT
63 T-GTCTTACACTAGCACACATCTCATAGCCGAT
* * * * *
81311365 G-CATGTCCCAGACAT-GTTTTACACTAGCT-TACGT-CTCGAGGCCGATGCATATCTCAGACAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTA-GTAAT-GTGGCCGATGCATGTCCCAGACAT
*
81311426 GTCTTACACTAGCACTCATCTCAATA-CCGAT
64 GTCTTACACTAGCACACATCTC-ATAGCCGAT
* * *
81311457 GCCATGTCCCAGACATGGTCTTACACTGGCTCTAATAATGTGGTCGATGCATGTCCCAGACATGT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTAGTAATGTGGCCGATGCATGTCCCAGACATGT
* *
81311522 CTTAAACTAGCTCACA
66 CTTACACTAGCACACA
81311538 ATAACCTACA
Statistics
Matches: 143, Mismatches: 21, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
90 10 0.07
91 13 0.09
92 21 0.15
93 20 0.14
94 61 0.43
95 17 0.12
96 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (94 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCTCTAGTAATGTGGCCGATGCATGTCCCAGACATGT
CTTACACTAGCACACATCTCATAGCCGAT
Found at i:81314438 original size:68 final size:64
Alignment explanation
Indices: 81314322--81314579 Score: 231
Period size: 68 Copynumber: 3.9 Consensus size: 64
81314312 TGGATGATAC
** * * *
81314322 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGCTAC
1 AGATA-TATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAG-ACAAGAGAGCTAC
81314386 AAG
64 --G
* *
81314389 ACATTATGATGTAGCTAGGTCACATGGGTGATACT-ATGTGTACACCATGTAGACAAGAGAGCTA
1 AGA-TAT-ATGTAGCTAGGTCACATGGGTGGTACTGA-GTGTACACCATGTAGACAAGAGAGCTA
81314453 CG
63 CG
* * * *
81314455 GGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAG-G-ACACCATGTAGACAAGAGAGC
1 AGATATATGTAGCTAGGTCACATGGGTGG-T--A-CTG-AGTGTACACCATGTAGACAAGAGAGC
81314518 TACG
61 TACG
* * *
81314522 AGATAAAT-TGGCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGT-GTACAAGAGAG
1 AGATATATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAG-ACAAGAGAG
81314580 TCGAACTCTA
Statistics
Matches: 158, Mismatches: 20, Indels: 30
0.76 0.10 0.14
Matches are distributed among these distances:
61 2 0.01
62 4 0.03
63 18 0.11
64 20 0.13
65 5 0.03
66 19 0.12
67 36 0.23
68 51 0.32
69 2 0.01
70 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.24
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAGACAAGAGAGCTACG
Found at i:81315705 original size:27 final size:27
Alignment explanation
Indices: 81315667--81315719 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
81315657 TCATGACATG
81315667 TATATATATATATGACTAGTCTCAATA
1 TATATATATATATGACTAGTCTCAATA
81315694 TATATATATATATGACTAGTCTCAAT
1 TATATATATATATGACTAGTCTCAAT
81315720 GTAATGCTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.42
Consensus pattern (27 bp):
TATATATATATATGACTAGTCTCAATA
Found at i:81319664 original size:39 final size:39
Alignment explanation
Indices: 81319601--81319719 Score: 184
Period size: 39 Copynumber: 3.0 Consensus size: 39
81319591 TAGTTCATTT
* * *
81319601 ACATGGTAATCACATTCACTTTTAAGCATATATCACATTAC
1 ACAT-GTAATCACA-TAACATTTAAGCATATATCACAATAC
81319642 ACATGTAATCACATAACATTTAAGCATATATCACAATAC
1 ACATGTAATCACATAACATTTAAGCATATATCACAATAC
*
81319681 ACATATAATCACATAACATTTAAGCATATATCACAATAC
1 ACATGTAATCACATAACATTTAAGCATATATCACAATAC
81319720 TCAAAAACAT
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
39 61 0.82
40 9 0.12
41 4 0.05
ACGTcount: A:0.44, C:0.21, G:0.05, T:0.30
Consensus pattern (39 bp):
ACATGTAATCACATAACATTTAAGCATATATCACAATAC
Found at i:81319674 original size:22 final size:22
Alignment explanation
Indices: 81319649--81319715 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
81319639 TACACATGTA
81319649 ATCACATAACATTTAAGCATAT
1 ATCACATAACATTTAAGCATAT
81319671 ATCAC---A-A--TACA-CATAT
1 ATCACATAACATTTA-AGCATAT
81319687 AATCACATAACATTTAAGCATAT
1 -ATCACATAACATTTAAGCATAT
81319710 ATCACA
1 ATCACA
81319716 ATACTCAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 18
0.67 0.00 0.33
Matches are distributed among these distances:
16 7 0.19
17 6 0.17
18 1 0.03
19 1 0.03
20 1 0.03
21 1 0.03
22 12 0.33
23 7 0.19
ACGTcount: A:0.48, C:0.21, G:0.03, T:0.28
Consensus pattern (22 bp):
ATCACATAACATTTAAGCATAT
Found at i:81321911 original size:16 final size:18
Alignment explanation
Indices: 81321886--81321932 Score: 62
Period size: 16 Copynumber: 2.7 Consensus size: 18
81321876 AAATTAAGAT
*
81321886 ATTTTTTTTCTTTTTC-C
1 ATTTTCTTTCTTTTTCTC
81321903 -TTTTCTTTCTTTTTCTC
1 ATTTTCTTTCTTTTTCTC
*
81321920 ATTCTCTTTCTTT
1 ATTTTCTTTCTTT
81321933 CCTTTCTTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 14 0.54
17 1 0.04
18 11 0.42
ACGTcount: A:0.04, C:0.21, G:0.00, T:0.74
Consensus pattern (18 bp):
ATTTTCTTTCTTTTTCTC
Found at i:81325019 original size:24 final size:25
Alignment explanation
Indices: 81324987--81325039 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 25
81324977 AAAAAGAAAG
81324987 AGAAAAATTAAAAGGAAATGAG-AA
1 AGAAAAATTAAAAGGAAATGAGTAA
* * *
81325011 AGAAAAATTGAAGGGGAATGAGTAA
1 AGAAAAATTAAAAGGAAATGAGTAA
81325036 AGAA
1 AGAA
81325040 GTTCTTCATG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 19 0.76
25 6 0.24
ACGTcount: A:0.60, C:0.00, G:0.26, T:0.13
Consensus pattern (25 bp):
AGAAAAATTAAAAGGAAATGAGTAA
Found at i:81327275 original size:32 final size:33
Alignment explanation
Indices: 81327229--81327308 Score: 92
Period size: 32 Copynumber: 2.4 Consensus size: 33
81327219 GCACTAAATT
* * *
81327229 GGTTGGTGTATATATAATATAA-ATATGTGTGCAT
1 GGTTTGTGT-TATAT-ATATAATATATATGTGCAA
81327263 GGTTT-TGTTATATATATAATATATATGTGCAA
1 GGTTTGTGTTATATATATAATATATATGTGCAA
*
81327295 GTTTTGTGTTATAT
1 GGTTTGTGTTATAT
81327309 GTAATATATA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
31 6 0.15
32 19 0.47
33 11 0.28
34 4 0.10
ACGTcount: A:0.30, C:0.03, G:0.20, T:0.47
Consensus pattern (33 bp):
GGTTTGTGTTATATATATAATATATATGTGCAA
Found at i:81327299 original size:31 final size:33
Alignment explanation
Indices: 81327239--81327319 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 33
81327229 GGTTGGTGTA
* *
81327239 TATATAATATAA-ATATGTGTGCATGGTTTTGT-
1 TATAT-ATATAATATATATGTGCATAGTTTTGTG
81327271 TATATATATAATATATATGTGCA-AGTTTTGTG
1 TATATATATAATATATATGTGCATAGTTTTGTG
*
81327303 T-TATATGTAATATATAT
1 TATATATATAATATATAT
81327320 AGGCGTGGCG
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
31 28 0.64
32 16 0.36
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (33 bp):
TATATATATAATATATATGTGCATAGTTTTGTG
Found at i:81327316 original size:36 final size:34
Alignment explanation
Indices: 81327237--81327320 Score: 86
Period size: 32 Copynumber: 2.5 Consensus size: 34
81327227 TTGGTTGGTG
* *
81327237 TATATATAATATAA-ATATGTGTGCATGGTTTTGT
1 TATAT-TAATATAATATATATGTGCAAGGTTTTGT
*
81327271 TATA-T-ATATAATATATATGTGCAAGTTTTGTGT
1 TATATTAATATAATATATATGTGCAAGGTTT-TGT
81327304 TATATGTAATAT-ATATA
1 TATAT-TAATATAATATA
81327321 GGCGTGGCGT
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
31 6 0.14
32 15 0.36
33 7 0.17
34 4 0.10
35 6 0.14
36 4 0.10
ACGTcount: A:0.36, C:0.02, G:0.14, T:0.48
Consensus pattern (34 bp):
TATATTAATATAATATATATGTGCAAGGTTTTGT
Found at i:81327468 original size:18 final size:19
Alignment explanation
Indices: 81327445--81327492 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
81327435 TATTATATTA
*
81327445 TATTATATGTG-TGGGTCT
1 TATTATATATGATGGGTCT
*
81327463 TATTATATATGCATTGGTCT
1 TATTATATATG-ATGGGTCT
81327483 TATTATATAT
1 TATTATATAT
81327493 ATTATATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 10 0.38
20 16 0.62
ACGTcount: A:0.25, C:0.06, G:0.17, T:0.52
Consensus pattern (19 bp):
TATTATATATGATGGGTCT
Done.