Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 249 of 333
Found at i:82032102 original size:13 final size:13
Alignment explanation
Indices: 82032084--82032109 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
82032074 CTCAATGGAG
82032084 CACTTCTTGACTT
1 CACTTCTTGACTT
82032097 CACTTCTTGACTT
1 CACTTCTTGACTT
82032110 TTCTCTCCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.08, T:0.46
Consensus pattern (13 bp):
CACTTCTTGACTT
Found at i:82037731 original size:47 final size:48
Alignment explanation
Indices: 82037658--82037877 Score: 167
Period size: 47 Copynumber: 4.7 Consensus size: 48
82037648 GGGGTAAGGT
* * *
82037658 GCCGATGCCATGTCCCAGACACGGTCTTACACTGGCTCAT-ATCTC-AA
1 GCCGAAGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGAA
* *
82037705 GCCGAAGCCATATCCCAGACATGGTCTTACACTGACTATCATCTCGTA
1 GCCGAAGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGAA
* *
82037753 GCC-AA-CGCATGTCCCAGACAT-GTCTTACACT-AGCT-TACGTCTCGAG
1 GCCGAAGC-CATGTCCCAGACATGGTCTTACACTGA-CTAT-CATCTCGAA
* * *
82037799 GCCGATG-CATGTCCCAGAAAT-GTCTTACACT-AGC-ACTCGTCTC-AA
1 GCCGAAGCCATGTCCCAGACATGGTCTTACACTGA-CTA-TCATCTCGAA
** * *
82037844 TATCGATGCCATGTCCCAGGCATGGTCTTACACT
1 -GCCGAAGCCATGTCCCAGACATGGTCTTACACT
82037878 AGCTCTCACA
Statistics
Matches: 145, Mismatches: 16, Indels: 23
0.79 0.09 0.12
Matches are distributed among these distances:
45 3 0.02
46 61 0.42
47 67 0.46
48 14 0.10
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.25
Consensus pattern (48 bp):
GCCGAAGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGAA
Found at i:82037796 original size:46 final size:46
Alignment explanation
Indices: 82037666--82037832 Score: 148
Period size: 46 Copynumber: 3.6 Consensus size: 46
82037656 GTGCCGATGC
* * *
82037666 CATGTCCCAGACACGGTCTTACACTGGCTCAT-ATCTC-AAGCCGAA-G
1 CATGTCCCAGACA-TGTCTTACACTAGCT-ATCATCTCGAGGCC-AACG
*
82037712 CCATATCCCAGACATGGTCTTACACT-GACTATCATCTCGTA-GCCAACG
1 -CATGTCCCAGACAT-GTCTTACACTAG-CTATCATCTCG-AGGCCAACG
* * *
82037760 CATGTCCCAGACATGTCTTACACTAGCT-TACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTAT-CATCTCGAGGCCAACG
*
82037806 CATGTCCCAGAAATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
82037833 ACTCGTCTCA
Statistics
Matches: 104, Mismatches: 7, Indels: 19
0.80 0.05 0.15
Matches are distributed among these distances:
45 2 0.02
46 52 0.50
47 45 0.43
48 4 0.04
49 1 0.01
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.25
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTATCATCTCGAGGCCAACG
Found at i:82038564 original size:8 final size:8
Alignment explanation
Indices: 82038535--82038582 Score: 62
Period size: 8 Copynumber: 6.1 Consensus size: 8
82038525 GAATCATTTT
82038535 GCAAAATA
1 GCAAAATA
* *
82038543 GTAAAGTA
1 GCAAAATA
82038551 -CAAAATA
1 GCAAAATA
82038558 GCAAAATA
1 GCAAAATA
*
82038566 GTAAAATA
1 GCAAAATA
82038574 GCAAAATA
1 GCAAAATA
82038582 G
1 G
82038583 TAAACTCATT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
7 5 0.15
8 28 0.85
ACGTcount: A:0.60, C:0.08, G:0.15, T:0.17
Consensus pattern (8 bp):
GCAAAATA
Found at i:82038565 original size:23 final size:24
Alignment explanation
Indices: 82038535--82038582 Score: 80
Period size: 23 Copynumber: 2.0 Consensus size: 24
82038525 GAATCATTTT
*
82038535 GCAAAATAGTAAAGTA-CAAAATA
1 GCAAAATAGTAAAATAGCAAAATA
82038558 GCAAAATAGTAAAATAGCAAAATA
1 GCAAAATAGTAAAATAGCAAAATA
82038582 G
1 G
82038583 TAAACTCATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 15 0.65
24 8 0.35
ACGTcount: A:0.60, C:0.08, G:0.15, T:0.17
Consensus pattern (24 bp):
GCAAAATAGTAAAATAGCAAAATA
Found at i:82038573 original size:16 final size:16
Alignment explanation
Indices: 82038552--82038586 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
82038542 AGTAAAGTAC
82038552 AAAATAGCAAAATAGT
1 AAAATAGCAAAATAGT
82038568 AAAATAGCAAAATAGT
1 AAAATAGCAAAATAGT
82038584 AAA
1 AAA
82038587 CTCATTTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.66, C:0.06, G:0.11, T:0.17
Consensus pattern (16 bp):
AAAATAGCAAAATAGT
Found at i:82040324 original size:18 final size:17
Alignment explanation
Indices: 82040291--82040328 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
82040281 AACAAATTTG
82040291 AATAAAAATAATAATAA
1 AATAAAAATAATAATAA
*
82040308 AATAAAATTACATAATAA
1 AATAAAAATA-ATAATAA
82040326 AAT
1 AAT
82040329 TCATAAGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (17 bp):
AATAAAAATAATAATAA
Found at i:82055280 original size:87 final size:85
Alignment explanation
Indices: 82055123--82055287 Score: 215
Period size: 85 Copynumber: 1.9 Consensus size: 85
82055113 AGCTATCTGG
** * *
82055123 TACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTG
1 TACACATAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCAGGTACACATAGTAGCCTG
82055188 TACTTAGTACTACCATTTGA
66 TACTTAGTACTACCATTTGA
* * * * *
82055208 TACACGTAGTAGCCTGCAGTTAGTACTACACACATGATCGAAGTTATCAGGTACGCATAGTAGCC
1 TACACATAGTAGCCTGCACTTAGTACTACACACACGA-CCAA-TTATCAGGTACACATAGTAGCC
82055273 T-TCACTTAGTACTAC
64 TGT-ACTTAGTACTAC
82055288 ACAAGCGACC
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
85 32 0.47
86 4 0.06
87 32 0.47
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.28
Consensus pattern (85 bp):
TACACATAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCAGGTACACATAGTAGCCTG
TACTTAGTACTACCATTTGA
Found at i:82055719 original size:35 final size:35
Alignment explanation
Indices: 82055668--82055734 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
82055658 ATATTTCATA
*
82055668 ATAACAATCTTCATATCATATAAATAACATTAATG
1 ATAACAATCATCATATCATATAAATAACATTAATG
*
82055703 ATAATAATCATCATATCATATAAATAACATTA
1 ATAACAATCATCATATCATATAAATAACATTA
82055735 TATTACTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.51, C:0.13, G:0.01, T:0.34
Consensus pattern (35 bp):
ATAACAATCATCATATCATATAAATAACATTAATG
Found at i:82055737 original size:19 final size:19
Alignment explanation
Indices: 82055680--82055737 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
82055670 AACAATCTTC
82055680 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
* *
82055699 A-AT--GAT-AATAATCATC
1 ATATCATATAAATAA-CATT
82055715 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
82055734 ATAT
1 ATAT
82055738 TACTTAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
15 5 0.17
16 6 0.20
17 2 0.07
18 2 0.07
19 10 0.33
20 5 0.17
ACGTcount: A:0.52, C:0.10, G:0.02, T:0.36
Consensus pattern (19 bp):
ATATCATATAAATAACATT
Found at i:82060880 original size:49 final size:49
Alignment explanation
Indices: 82060814--82061057 Score: 238
Period size: 49 Copynumber: 4.9 Consensus size: 49
82060804 AGCTGAAGCT
* * * * **
82060814 ATCTGGTACGC-TAAGTAGGCTGCATTTAGTACTACACATGCGACCAATT
1 ATCTGGTACACGT-AGTAGCCTGCACTTAGTACTACACACGCGACCAACA
* * * *
82060863 ATCCGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AACA
* * * * * *
82060913 ATTTGATACACGTAGTAGCCTGCAGTTAGTACTACACACGTGATCGAAGTA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-CA
* * * *
82060964 ATCAGGTACACATAGTAGCCTGCACTTATTACTACACATGCGACCAACA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAACA
* * *
82061013 ATCTGGTGCACGTAGTCGCCTGCACTTAGTACTACACACGTGACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
82061058 TCACAATAGC
Statistics
Matches: 157, Mismatches: 34, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
49 75 0.48
50 46 0.29
51 36 0.23
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAACA
Found at i:82061053 original size:100 final size:99
Alignment explanation
Indices: 82060827--82061057 Score: 275
Period size: 100 Copynumber: 2.3 Consensus size: 99
82060817 TGGTACGCTA
* * * * * * *
82060827 AGTAGGCTGCATTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTACACTTAG
1 AGTAGCCTGCACTTAGTACTACACACGTGACCAATAATCAGGTACACATAGTAGCCTACACTTAG
* * *
82060892 TACTACACACGTGACCTAACCATTTGATACACGT
66 TACTACACACGCGACCTAACAATCTGATACACGT
* * *
82060926 AGTAGCCTGCAGTTAGTACTACACACGTGATCGAAGTAATCAGGTACACATAGTAGCCTGCACTT
1 AGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TAATCAGGTACACATAGTAGCCTACACTT
* * * *
82060991 ATTACTACACATGCGACC-AACAATCTGGTGCACGT
64 AGTACTACACACGCGACCTAACAATCTGATACACGT
*
82061026 AGTCGCCTGCACTTAGTACTACACACGTGACC
1 AGTAGCCTGCACTTAGTACTACACACGTGACC
82061058 TCACAATAGC
Statistics
Matches: 111, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
99 27 0.24
100 44 0.40
101 40 0.36
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.25
Consensus pattern (99 bp):
AGTAGCCTGCACTTAGTACTACACACGTGACCAATAATCAGGTACACATAGTAGCCTACACTTAG
TACTACACACGCGACCTAACAATCTGATACACGT
Found at i:82061448 original size:19 final size:19
Alignment explanation
Indices: 82061391--82061448 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
82061381 AACAATCTTG
82061391 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
* *
82061410 A-AT--GAT-AATAATCATC
1 ATATCATATAAATAA-CATT
82061426 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
82061445 ATAT
1 ATAT
82061449 TACTTAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
15 5 0.17
16 6 0.20
17 2 0.07
18 2 0.07
19 10 0.33
20 5 0.17
ACGTcount: A:0.52, C:0.10, G:0.02, T:0.36
Consensus pattern (19 bp):
ATATCATATAAATAACATT
Found at i:82061672 original size:30 final size:29
Alignment explanation
Indices: 82061638--82061696 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
82061628 CTTTAATACG
82061638 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTT-CCCCTA
* *
82061668 AACTTTTGCATAATTACACTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTCCCCTA
82061697 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 6 0.23
30 19 0.73
31 1 0.04
ACGTcount: A:0.29, C:0.27, G:0.07, T:0.37
Consensus pattern (29 bp):
AACTTTGGCAAAATTACACTTTTCCCCTA
Found at i:82064884 original size:56 final size:56
Alignment explanation
Indices: 82064824--82064959 Score: 254
Period size: 56 Copynumber: 2.4 Consensus size: 56
82064814 TCCCAGACAG
* *
82064824 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTATTAAACTT
1 GGTCTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATTAAACGT
82064880 GGTCTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATTAAACGT
82064936 GGTCTTACTCGCACACATATATCA
1 GGTCTTACTCGCACACATATATCA
82064960 ATGCCATGGT
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
56 78 1.00
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATTAAACGT
Found at i:82072500 original size:37 final size:37
Alignment explanation
Indices: 82072441--82072549 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
82072431 AGCTCAGACG
* *
82072441 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
82072478 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
82072515 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
82072550 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:82072808 original size:47 final size:47
Alignment explanation
Indices: 82072756--82072949 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
82072746 CATACATATT
* * * *
82072756 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
82072803 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
82072850 TCGCATTGGCCATTCAGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
82072897 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
82072944 TCACAT
1 TCACAT
82072950 AAAATCCTAA
Statistics
Matches: 131, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:82080457 original size:40 final size:39
Alignment explanation
Indices: 82080373--82080557 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 39
82080363 TTGAATGATG
* *
82080373 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAT
*
82080412 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
82080453 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT
*
82080492 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCGAGTTACTAAT
* * *
82080531 AACCGGGCTATGTCCCGAAGGCCTTTG
1 -TCCGGGCTAAGT-CCGAAGGCATTTG
82080558 AATGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 37 0.30
40 76 0.61
41 11 0.09
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:82080510 original size:79 final size:80
Alignment explanation
Indices: 82080373--82080552 Score: 233
Period size: 79 Copynumber: 2.3 Consensus size: 80
82080363 TTGAATGATG
* *
82080373 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
82080438 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * **
82080452 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCTCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGATC-CGAAGGCA
82080514 TTTGTGCGAGTTACTATA
63 TTTGTGCGAGTTACTATA
* *
82080532 ACCGGGCTATGTCCCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGC
82080553 CTTTGAATGA
Statistics
Matches: 88, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.02
79 59 0.67
80 27 0.31
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:82083810 original size:41 final size:42
Alignment explanation
Indices: 82083721--82083868 Score: 142
Period size: 41 Copynumber: 3.5 Consensus size: 42
82083711 AATGCCAACA
* ** *
82083721 TCCCAGACGTGGTCTTACATGCTATCTCATATCGATGCCACTA
1 TCCCAGACGTGGTCTTACATGCAATCAAATATCGATGCCA-TG
82083764 TCCCAGACAG-GGTCTTACATG-AATCAAATA-CGATGCCGATG
1 TCCCAGAC-GTGGTCTTACATGCAATCAAATATCGATGCC-ATG
* * *
82083805 TCCCAGACATGGTCTTACACGTAATCACAAATATC-ATTGCCAATG
1 TCCCAGACGTGGTCTTACATGCAAT--CAAATATCGA-TGCC-ATG
82083850 TCCCAGACGTGGTCTTACA
1 TCCCAGACGTGGTCTTACA
82083869 CGAGAACACA
Statistics
Matches: 89, Mismatches: 8, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
41 26 0.29
42 10 0.11
43 19 0.21
44 8 0.09
45 26 0.29
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (42 bp):
TCCCAGACGTGGTCTTACATGCAATCAAATATCGATGCCATG
Found at i:82083855 original size:45 final size:41
Alignment explanation
Indices: 82083712--82083871 Score: 133
Period size: 45 Copynumber: 3.8 Consensus size: 41
82083702 ATATCAAACA
** * * * **
82083712 ATGCCAACATCCCAGACGTGGTCTTACATGCTATCTCATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AATCAAATA-CG
* * * *
82083755 ATGCCACTATCCCAGACAGGGTCTTACATGAATCAAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAATCAAATACG
*
82083796 ATGCCGATGTCCCAGACATGGTCTTACACGTAATCACAAATATC-
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAT--CAAATA-CG
*
82083840 ATTGCCAATGTCCCAGACGTGGTCTTACACGA
1 A-TGCCAATGTCCCAGACATGGTCTTACACGA
82083872 GAACACATAC
Statistics
Matches: 98, Mismatches: 14, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
41 27 0.28
42 9 0.09
43 26 0.27
44 8 0.08
45 28 0.29
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.25
Consensus pattern (41 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAATCAAATACG
Found at i:82089967 original size:46 final size:47
Alignment explanation
Indices: 82089844--82089972 Score: 199
Period size: 46 Copynumber: 2.8 Consensus size: 47
82089834 TGTAACCCTC
* * * *
82089844 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-AAGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
*
82089890 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGA-CATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
82089936 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82089973 TGCTCAATCA
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
46 75 0.99
47 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.20
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
Found at i:82101051 original size:40 final size:39
Alignment explanation
Indices: 82100991--82101168 Score: 268
Period size: 40 Copynumber: 4.5 Consensus size: 39
82100981 CGGATGATAA
*
82100991 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTATAT
82101031 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCC-GAAGGCATTTGTGCGAGTTACTATAT
82101071 CCGGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTATAT
* *
82101111 CCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTTGCTATAT
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAT
*
82101151 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGT-CCGAAGG
82101169 TACTTGGGTT
Statistics
Matches: 131, Mismatches: 4, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
39 19 0.15
40 109 0.83
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:82109120 original size:40 final size:40
Alignment explanation
Indices: 82109074--82109277 Score: 338
Period size: 40 Copynumber: 5.1 Consensus size: 40
82109064 ACTAAGATCT
*
82109074 GAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
*
82109114 GAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
*
82109154 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTTCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
*
82109194 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCTC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
* * *
82109234 GAAGGCATTTGTGCGAGTTGCTATATCC-GACTAAATCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
82109273 GAAGG
1 GAAGG
82109278 TACTTGGGTT
Statistics
Matches: 156, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
39 13 0.08
40 143 0.92
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
Found at i:82113367 original size:40 final size:40
Alignment explanation
Indices: 82113064--82113366 Score: 527
Period size: 40 Copynumber: 7.6 Consensus size: 40
82113054 ACACATTTGT
* * *
82113064 CTTCGGGTCTTAACCCGGACATATCAACTTGCATAATTGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGC
*
82113104 CTTCGGGTCTTAGCCCGGATATATCATCTCGCATAATTGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGC
* *
82113144 CTTCGGGTCATAGCCCGGATATATTAACTCGCATAATTGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGC
82113184 CTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGC
82113224 CTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGC
*
82113264 CTTCGGGTCTTAGCCCGGATATATTAACTCGCATAATTGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGC
*
82113304 CTTC-GGTCTTAGCCCGGATATATTAACTCGCATAATTGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGC
82113343 CTTCGGGTCTTAGCCCGGATATAT
1 CTTCGGGTCTTAGCCCGGATATAT
82113367 TCCAATGCTC
Statistics
Matches: 252, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 39 0.15
40 213 0.85
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.31
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGC
Found at i:82121859 original size:40 final size:40
Alignment explanation
Indices: 82121771--82122016 Score: 428
Period size: 40 Copynumber: 6.2 Consensus size: 40
82121761 GCAAACACAT
* *
82121771 TTGCCTTCGGGTCTTAACCCGGACATATCAACT-GCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
82121810 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
82121850 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
82121890 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
82121930 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
82121970 TTGCCTTCGGGTCTTAGCCCGGATATATC-ACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
82122009 -TG-CTTCGG
1 TTGCCTTCGG
82122017 TCTACCGATA
Statistics
Matches: 200, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
37 6 0.03
38 2 0.01
39 40 0.20
40 152 0.76
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:82121988 original size:120 final size:118
Alignment explanation
Indices: 82121771--82122060 Score: 428
Period size: 120 Copynumber: 2.6 Consensus size: 118
82121761 GCAAACACAT
82121771 TTGCCTTCGGGTCTTAACCCGGACATATCAACTGCATAATTGCCTTCGGGTCTTAGCCCGGATAT
1 TTGCCTTCGGGTCTTAACCCGGACATATCAACTGCATAATTGCCTTCGGGTCTTAGCCCGGATAT
*
82121836 ATCATCTCGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
66 ATCAACTCGCATAATTGCCTTCGGGTCATAGCCCGGATATATC-ACTCGCATAA
* *
82121890 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCTTAACCCGGACATATCAACT-GCATAATTGCCTTCGGGTCTTAGCCCGGATA
*
82121955 TATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATATCACTCGCATAA
65 TATCAACTCGCATAATTGCCTTCGGGTCATAGCCCGGATATATCACTCGCATAA
82122009 -TG-CTTC-GGTC-T-A-CC-G--ATAT--A-T-CAT-ATTGCCTTCGGGTCTTAGCCCGGATAT
1 TTGCCTTCGGGTCTTAACCCGGACATATCAACTGCATAATTGCCTTCGGGTCTTAGCCCGGATAT
82122060 A
66 A
82122061 ATCCAATGCT
Statistics
Matches: 165, Mismatches: 5, Indels: 17
0.88 0.03 0.09
Matches are distributed among these distances:
104 28 0.17
105 3 0.02
107 1 0.01
108 1 0.01
110 4 0.02
112 1 0.01
113 2 0.01
115 1 0.01
116 4 0.02
117 4 0.02
118 2 0.01
119 41 0.25
120 73 0.44
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (118 bp):
TTGCCTTCGGGTCTTAACCCGGACATATCAACTGCATAATTGCCTTCGGGTCTTAGCCCGGATAT
ATCAACTCGCATAATTGCCTTCGGGTCATAGCCCGGATATATCACTCGCATAA
Found at i:82122059 original size:32 final size:34
Alignment explanation
Indices: 82121771--82122060 Score: 200
Period size: 40 Copynumber: 7.8 Consensus size: 34
82121761 GCAAACACAT
* *
82121771 TTGCCTTCGGGTCTTAACCCGGACATATCAACTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATC-ACT-C---A
82121810 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCA-CT--C---A
*
82121850 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATC-ACT--C---A
82121890 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATC-ACT--C---A
82121930 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATC-ACT--C---A
82121970 TTGCCTTCGGGTCTTAGCCCGGATATATCACTCGCA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCACT--CA
82122006 TAATG-CTTC-GGTC-TA--CC-GATATATCA-T-A
1 T--TGCCTTCGGGTCTTAGCCCGGATATATCACTCA
82122034 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
82122061 ATCCAATGCT
Statistics
Matches: 236, Mismatches: 4, Indels: 29
0.88 0.01 0.11
Matches are distributed among these distances:
26 2 0.01
27 4 0.02
28 6 0.03
29 2 0.01
31 3 0.01
32 15 0.06
33 2 0.01
35 2 0.01
36 6 0.03
37 4 0.02
38 3 0.01
39 35 0.15
40 151 0.64
41 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (34 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCACTCA
Found at i:82132047 original size:14 final size:14
Alignment explanation
Indices: 82132013--82132054 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
82132003 GTACAATATA
82132013 TATATGT-TATAAT
1 TATATGTATATAAT
*
82132026 AATAATGTATATAAT
1 TAT-ATGTATATAAT
*
82132041 TATATGTACATAAT
1 TATATGTATATAAT
82132055 ATAAGTTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
13 2 0.08
14 14 0.58
15 8 0.33
ACGTcount: A:0.45, C:0.02, G:0.07, T:0.45
Consensus pattern (14 bp):
TATATGTATATAAT
Found at i:82149850 original size:22 final size:22
Alignment explanation
Indices: 82149825--82149868 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
82149815 AGTTGCTTTC
**
82149825 TTTAAATATATTATATAAAAAT
1 TTTAAATATAAAATATAAAAAT
82149847 TTTAAATATAAAATATAAAAAT
1 TTTAAATATAAAATATAAAAAT
82149869 AGTTTTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
TTTAAATATAAAATATAAAAAT
Found at i:82150308 original size:4 final size:4
Alignment explanation
Indices: 82150299--82150326 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
82150289 TTTCACTCGT
82150299 TTTC TTTC TTTC TTTC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC
82150327 CAAACATCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTC
Found at i:82152635 original size:3 final size:3
Alignment explanation
Indices: 82152627--82152651 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
82152617 GTTATTTACC
82152627 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
82152652 TCCTTTCCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:82154787 original size:27 final size:27
Alignment explanation
Indices: 82154749--82154807 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
82154739 TTTAATGGAG
82154749 GCACCAAATTGGATTAAAAAAAATATT
1 GCACCAAATTGGATTAAAAAAAATATT
82154776 GCACCAAATTGGATTAAAAAAAATATT
1 GCACCAAATTGGATTAAAAAAAATATT
82154803 GCACC
1 GCACC
82154808 GTATTTTCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.49, C:0.15, G:0.12, T:0.24
Consensus pattern (27 bp):
GCACCAAATTGGATTAAAAAAAATATT
Found at i:82154909 original size:135 final size:133
Alignment explanation
Indices: 82154669--82154910 Score: 466
Period size: 135 Copynumber: 1.8 Consensus size: 133
82154659 GTTTTCTAAA
82154669 TGCACCGTATTTTCATAGGTATTTTCGAAGGTAAATGAAAAAAAAATTATTAATTTTTGTTGCTG
1 TGCACCGTATTTTCATAGGTATTTTCGAAGGTAAATGAAAAAAAAATTATTAATTTTTGTTGCTG
82154734 CCTCCTTTAATGGAGGCACCAAATTGGATTAAAAAAAATATTGCACCAAATTGGATTAAAAAAAA
66 CCTCCTTTAATGGAGGCACCAAATTGGATTAAAAAAAATATTGCACCAAATTGGATTAAAAAAAA
82154799 TAT
131 TAT
82154802 TGCACCGTATTTTCATAGGTATTTTCGAAGGTAAATGGAAAAAAAAAATTATTAATTTTTGTTGC
1 TGCACCGTATTTTCATAGGTATTTTCGAAGGTAAAT-G-AAAAAAAAATTATTAATTTTTGTTGC
82154867 TGCCTCCTTTAATGGAGGCACCAAATTGGATTAAAAAAAATATT
64 TGCCTCCTTTAATGGAGGCACCAAATTGGATTAAAAAAAATATT
82154911 TGTTAGTGCC
Statistics
Matches: 107, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
133 36 0.34
134 1 0.01
135 70 0.65
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (133 bp):
TGCACCGTATTTTCATAGGTATTTTCGAAGGTAAATGAAAAAAAAATTATTAATTTTTGTTGCTG
CCTCCTTTAATGGAGGCACCAAATTGGATTAAAAAAAATATTGCACCAAATTGGATTAAAAAAAA
TAT
Found at i:82155273 original size:27 final size:28
Alignment explanation
Indices: 82155229--82155284 Score: 87
Period size: 27 Copynumber: 2.0 Consensus size: 28
82155219 ATTTTTATAT
82155229 ACATAACTAACAGATTAAATATTGCTTA
1 ACATAACTAACAGATTAAATATTGCTTA
**
82155257 ACATAA-TAACATTTTAAATATTGCTTA
1 ACATAACTAACAGATTAAATATTGCTTA
82155284 A
1 A
82155285 AACATAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 20 0.77
28 6 0.23
ACGTcount: A:0.46, C:0.12, G:0.05, T:0.36
Consensus pattern (28 bp):
ACATAACTAACAGATTAAATATTGCTTA
Found at i:82155690 original size:30 final size:30
Alignment explanation
Indices: 82155655--82155714 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
82155645 TATTTTATTA
82155655 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
* *
82155685 TTAATTTTGTTATTATTTTAGAGGTATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
82155715 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.02, G:0.15, T:0.58
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTG
Found at i:82157330 original size:13 final size:13
Alignment explanation
Indices: 82157287--82157320 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
82157277 CAATACTTTT
82157287 GAAAAGTGTTGTG
1 GAAAAGTGTTGTG
82157300 GAAAAGTGTTGTG
1 GAAAAGTGTTGTG
82157313 GAAAAGTG
1 GAAAAGTG
82157321 CTTTTGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.38, T:0.26
Consensus pattern (13 bp):
GAAAAGTGTTGTG
Found at i:82161518 original size:22 final size:22
Alignment explanation
Indices: 82161488--82161550 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
82161478 CTATTATGTT
*
82161488 AAATAGTAGCAAAATAATAATA
1 AAATAGTAGCAAAATAATAAGA
* * *
82161510 AAATGGTAGCAAAACAATGAGA
1 AAATAGTAGCAAAATAATAAGA
82161532 AAATAGTAAG-AAAATAATA
1 AAATAGT-AGCAAAATAATA
82161551 TTGAAAAACA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
22 31 0.94
23 2 0.06
ACGTcount: A:0.62, C:0.05, G:0.14, T:0.19
Consensus pattern (22 bp):
AAATAGTAGCAAAATAATAAGA
Found at i:82164933 original size:19 final size:19
Alignment explanation
Indices: 82164909--82164951 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
82164899 AAATATATAT
82164909 TTAATAATACACCACATAA
1 TTAATAATACACCACATAA
* *
82164928 TTAATAGTTCACCACATAA
1 TTAATAATACACCACATAA
82164947 -TAATA
1 TTAATA
82164952 TTGTCCAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.49, C:0.19, G:0.02, T:0.30
Consensus pattern (19 bp):
TTAATAATACACCACATAA
Found at i:82167026 original size:50 final size:50
Alignment explanation
Indices: 82166951--82167277 Score: 537
Period size: 50 Copynumber: 6.5 Consensus size: 50
82166941 CCATGGCAAC
* *
82166951 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
82167001 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
82167051 AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
82167101 AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
82167151 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
82167201 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGGC
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT-GA
* * *
82167252 AAGTAAAAAGTGGTAGCTTCGGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
82167278 CTGATCAATG
Statistics
Matches: 264, Mismatches: 12, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
50 241 0.91
51 23 0.09
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:82167295 original size:31 final size:31
Alignment explanation
Indices: 82167257--82167315 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
82167247 ATGGCAAGTA
82167257 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
82167288 AAAAGTGGTAGCTTCGGCTACCTGATCA
1 AAAAGTGGTAGCTTCGGCTACCTGATCA
82167316 TCGGCTACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAAGTGGTAGCTTCGGCTACCTGATCAATG
Found at i:82167323 original size:46 final size:46
Alignment explanation
Indices: 82167270--82167361 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
82167260 AGTGGTAGCT
* *
82167270 TCGGCTACCTGATCAATGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
* * *
82167316 TCGGCTACTTGATTAGTGAAAAATGGTAGCTCCGGCTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
82167362 GTGAATAGTG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (46 bp):
TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
Found at i:82167365 original size:31 final size:31
Alignment explanation
Indices: 82167317--82167384 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
82167307 ACCTGATCAT
* * *
82167317 CGGCTACTTGATTAGTGAAAAATGGTAGCTC
1 CGGCTACCTGATCAGTGAAAAATGATAGCTC
* * *
82167348 CGGCTACCTGATCAGTGAATAGTGATAGCTT
1 CGGCTACCTGATCAGTGAAAAATGATAGCTC
82167379 CGGCTA
1 CGGCTA
82167385 TAAGTGACAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (31 bp):
CGGCTACCTGATCAGTGAAAAATGATAGCTC
Found at i:82173945 original size:50 final size:50
Alignment explanation
Indices: 82173869--82174142 Score: 440
Period size: 50 Copynumber: 5.5 Consensus size: 50
82173859 CCATGGAAAC
*
82173869 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * * *
82173919 AAGTGATAAATAATAACTTCAGCTACACTTATCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
82173969 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
82174019 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
82174069 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGGTCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
82174119 CAAGTGAAAAGTGGTAGCTTCGGC
1 -AAGTGATAAGTGATAGCTTCGGC
82174143 AACCTGATCA
Statistics
Matches: 205, Mismatches: 18, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
50 184 0.90
51 21 0.10
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:82174156 original size:31 final size:31
Alignment explanation
Indices: 82174121--82174269 Score: 235
Period size: 31 Copynumber: 4.8 Consensus size: 31
82174111 ACAAATGACA
*
82174121 AGTGAAAAGTGGTAGCTTCGGCAACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
82174152 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
82174183 AGTGAAAAATGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
82174214 AGTGAAAAATGGTAGCTCCGGCTACTTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
82174245 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
82174270 AAGTGACAAG
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 109 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:82174410 original size:46 final size:47
Alignment explanation
Indices: 82174289--82174410 Score: 147
Period size: 47 Copynumber: 2.6 Consensus size: 47
82174279 GTGATTTCCC
* * *
82174289 TATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTACTG
1 TATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATACTG
* * * *
82174336 TATAAGACCATATCTAGGATATGACATCAGTGAGATATGTGATTC-G
1 TATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATACTG
* * *
82174382 TGTAAGACCATAGCTGGGCTATGGCATCA
1 TATAAGACCATATCTGGGATATGGCATCA
82174411 TTATGTGAAG
Statistics
Matches: 63, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
46 25 0.40
47 38 0.60
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (47 bp):
TATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATACTG
Found at i:82182670 original size:36 final size:36
Alignment explanation
Indices: 82182574--82182672 Score: 103
Period size: 36 Copynumber: 2.8 Consensus size: 36
82182564 ATTTTCACTA
**
82182574 AGGGTTCACATGATATATACAACTCGC--AGTTCCT
1 AGGGTTCACATGATATATATGACTCGCATAGTTCCT
* * * * * * *
82182608 AAGATTCGCATAATACATGTGTCTCGCATAGTTCCT
1 AGGGTTCACATGATATATATGACTCGCATAGTTCCT
82182644 AGGGTTCACATGATATATATGACTCGCAT
1 AGGGTTCACATGATATATATGACTCGCAT
82182673 GTAACACATA
Statistics
Matches: 47, Mismatches: 16, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
34 18 0.38
36 29 0.62
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (36 bp):
AGGGTTCACATGATATATATGACTCGCATAGTTCCT
Found at i:82185494 original size:10 final size:10
Alignment explanation
Indices: 82185479--82185505 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
82185469 TCATATCCAG
82185479 CACGATTAGA
1 CACGATTAGA
82185489 CACGATTAGA
1 CACGATTAGA
82185499 CACGATT
1 CACGATT
82185506 TTTTATACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (10 bp):
CACGATTAGA
Found at i:82187874 original size:14 final size:15
Alignment explanation
Indices: 82187855--82187887 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
82187845 GAGTCAAAGC
*
82187855 TAAAAAT-TTTATAT
1 TAAAAATATTTAAAT
82187869 TAAAAATATTTAAAT
1 TAAAAATATTTAAAT
82187884 TAAA
1 TAAA
82187888 TTATTACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TAAAAATATTTAAAT
Found at i:82190230 original size:14 final size:14
Alignment explanation
Indices: 82190211--82190248 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
82190201 GTATGGGTCG
82190211 TGGGCAGAGGGCAC
1 TGGGCAGAGGGCAC
*
82190225 TGGGCAGAAGGCAC
1 TGGGCAGAGGGCAC
*
82190239 CGGGCAGAGG
1 TGGGCAGAGG
82190249 TGCTAGTCAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.24, C:0.21, G:0.50, T:0.05
Consensus pattern (14 bp):
TGGGCAGAGGGCAC
Found at i:82191484 original size:16 final size:16
Alignment explanation
Indices: 82191463--82191494 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
82191453 CATGAGATAC
*
82191463 AACTTTACGTTAAGTT
1 AACTTTACGCTAAGTT
82191479 AACTTTACGCTAAGTT
1 AACTTTACGCTAAGTT
82191495 GAGCAAGTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (16 bp):
AACTTTACGCTAAGTT
Found at i:82191764 original size:6 final size:7
Alignment explanation
Indices: 82191738--82191763 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
82191728 AAATTCTAAT
82191738 TTTTTTA
1 TTTTTTA
82191745 TTTTTTA
1 TTTTTTA
82191752 TTTTTTA
1 TTTTTTA
82191759 TTTTT
1 TTTTT
82191764 AACAAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:82193684 original size:5 final size:5
Alignment explanation
Indices: 82193668--82193737 Score: 79
Period size: 5 Copynumber: 13.6 Consensus size: 5
82193658 TTCTTTTGTT
*
82193668 ATATA TATATA ATATA ATAATA ATATA ATATA ATCTA ATATTA ATATA
1 ATATA -ATATA ATATA AT-ATA ATATA ATATA ATATA ATA-TA ATATA
* *
82193716 ATA-A AAATA ATATA TTATA ATA
1 ATATA ATATA ATATA ATATA ATA
82193738 AAAATCTTAA
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
4 3 0.05
5 37 0.67
6 15 0.27
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:82193695 original size:16 final size:16
Alignment explanation
Indices: 82193674--82193729 Score: 73
Period size: 16 Copynumber: 3.6 Consensus size: 16
82193664 TGTTATATAT
82193674 ATATAATATAATAATA
1 ATATAATATAATAATA
*
82193690 ATATAATATAAT-CTA
1 ATATAATATAATAATA
82193705 ATATTAATATAATAA-A
1 ATA-TAATATAATAATA
82193721 A-ATAATATA
1 ATATAATATA
82193730 TTATAATAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
14 7 0.19
15 6 0.17
16 23 0.64
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAATATAATAATA
Found at i:82196399 original size:16 final size:16
Alignment explanation
Indices: 82196378--82196408 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82196368 CGGCAAATCC
*
82196378 CGAAATGTCGAAAAGT
1 CGAAATGCCGAAAAGT
82196394 CGAAATGCCGAAAAG
1 CGAAATGCCGAAAAG
82196409 CTAAAACTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.16, G:0.26, T:0.13
Consensus pattern (16 bp):
CGAAATGCCGAAAAGT
Found at i:82196661 original size:29 final size:29
Alignment explanation
Indices: 82196619--82196703 Score: 109
Period size: 29 Copynumber: 3.0 Consensus size: 29
82196609 GCATGACTGT
82196619 GAATGTGATTTGGGCCTAATGGGCCATAC
1 GAATGTGATTTGGGCCTAATGGGCCATAC
* * * *
82196648 GAATGTGATTTGGGCATAATGAGTCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAC
* *
82196677 GAATGAGA-TTGGGCCTAGTGGGCCATA
1 GAATGTGATTTGGGCCTAATGGGCCATA
82196704 TACATGTATG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
28 15 0.32
29 32 0.68
ACGTcount: A:0.27, C:0.13, G:0.32, T:0.28
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATGGGCCATAC
Found at i:82202655 original size:21 final size:21
Alignment explanation
Indices: 82202631--82202709 Score: 81
Period size: 21 Copynumber: 3.7 Consensus size: 21
82202621 TTTGTTATAT
82202631 ATATAATATAATAATATAATA
1 ATATAATATAATAATATAATA
*
82202652 ATATAGTA-ATATAATATAATGTA
1 ATATAATATA-ATAATATAA--TA
*
82202675 ATATTAATATAATAA-AAAATA
1 ATA-TAATATAATAATATAATA
*
82202696 ATATATTATAATAA
1 ATATAATATAATAA
82202710 AAATCTTAAG
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
20 11 0.22
21 21 0.43
23 8 0.16
24 8 0.16
25 1 0.02
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (21 bp):
ATATAATATAATAATATAATA
Found at i:82202684 original size:6 final size:5
Alignment explanation
Indices: 82202626--82202708 Score: 73
Period size: 5 Copynumber: 16.4 Consensus size: 5
82202616 TTTCTTTTGT
82202626 TATATA TATAA TAT-A -ATAA TATAA TA-ATA TAGTAA TATAA TATAA
1 TATA-A TATAA TATAA TATAA TATAA TATA-A TA-TAA TATAA TATAA
* * * *
82202671 TGTAA TATTAA TATAA TAAAA AATAA TATAT TATAA TA
1 TATAA TA-TAA TATAA TATAA TATAA TATAA TATAA TA
82202709 AAAATCTTAA
Statistics
Matches: 63, Mismatches: 8, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
3 2 0.03
4 3 0.05
5 45 0.71
6 12 0.19
7 1 0.02
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:82206589 original size:13 final size:12
Alignment explanation
Indices: 82206564--82206597 Score: 59
Period size: 13 Copynumber: 2.8 Consensus size: 12
82206554 TTGTTATTTG
82206564 AATCTGAATCTA
1 AATCTGAATCTA
82206576 AATCTGATATCTA
1 AATCTGA-ATCTA
82206589 AATCTGAAT
1 AATCTGAAT
82206598 ATGAAACTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 9 0.43
13 12 0.57
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (12 bp):
AATCTGAATCTA
Found at i:82212930 original size:26 final size:26
Alignment explanation
Indices: 82212894--82213003 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
82212884 TGATACAAAT
*
82212894 TGATAAAAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
82212920 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
82212946 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
82212972 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
82212998 TGATAA
1 TGATAA
82213004 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:82221045 original size:25 final size:25
Alignment explanation
Indices: 82221004--82221098 Score: 72
Period size: 25 Copynumber: 3.8 Consensus size: 25
82220994 TCCTGTACAC
*
82221004 GTATGCTCA-TACAAGCTGTGAATCA
1 GTATGCTCACT-CGAGCTGTGAATCA
*
82221029 GTATGCTCACTCGAGCTAT-ATATCA
1 GTATGCTCACTCGAGCTGTGA-ATCA
* *
82221054 GTATGCTCTCAT-GAGCTGTAAATC-
1 GTATGCTCAC-TCGAGCTGTGAATCA
* *
82221078 GATATACTCACACGAGCTGTG
1 G-TATGCTCACTCGAGCTGTG
82221099 GGTCAGAACG
Statistics
Matches: 56, Mismatches: 8, Indels: 12
0.74 0.11 0.16
Matches are distributed among these distances:
24 2 0.04
25 51 0.91
26 3 0.05
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (25 bp):
GTATGCTCACTCGAGCTGTGAATCA
Found at i:82225832 original size:11 final size:10
Alignment explanation
Indices: 82225763--82225848 Score: 56
Period size: 10 Copynumber: 8.6 Consensus size: 10
82225753 CACATTAGCA
82225763 TTTAATTAATT
1 TTTAA-TAATT
82225774 TTTAA-AATT
1 TTTAATAATT
82225783 TTTAA-AATAT
1 TTTAATAAT-T
**
82225793 TAAAAATATATT
1 T-TTAATA-ATT
*
82225805 TTT-AT-AGT
1 TTTAATAATT
82225813 TTTAATAATT
1 TTTAATAATT
82225823 TTTAAATAA-T
1 TTT-AATAATT
*
82225833 TTTAATGATT
1 TTTAATAATT
82225843 TTTAAT
1 TTTAAT
82225849 TTTAAAAAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 17
0.71 0.08 0.20
Matches are distributed among these distances:
8 5 0.08
9 18 0.30
10 20 0.33
11 12 0.20
12 3 0.05
13 2 0.03
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (10 bp):
TTTAATAATT
Found at i:82230229 original size:13 final size:13
Alignment explanation
Indices: 82230211--82230273 Score: 67
Period size: 13 Copynumber: 4.8 Consensus size: 13
82230201 TTAGCTATAA
82230211 TTTTGAAAAGTGC
1 TTTTGAAAAGTGC
*
82230224 TTTTGAAAAATG-
1 TTTTGAAAAGTGC
* *
82230236 TTGTGGAAAAATGC
1 TT-TTGAAAAGTGC
82230250 TTTT-AAGAAGTGC
1 TTTTGAA-AAGTGC
82230263 TTTTGAAAAGT
1 TTTTGAAAAGT
82230274 TTGGTTTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
12 4 0.10
13 34 0.81
14 4 0.10
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.38
Consensus pattern (13 bp):
TTTTGAAAAGTGC
Found at i:82233319 original size:95 final size:94
Alignment explanation
Indices: 82233220--82233733 Score: 525
Period size: 95 Copynumber: 5.4 Consensus size: 94
82233210 ATTAGAGAAA
*
82233220 CGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAGTAAATCAAATGAACTTAAGTTGT
1 CGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATGAACTTAAGTTG-
** *
82233285 GAACTTAAATCAACGAGCCATTTGAAGCAG
65 GAACTTAAATCAGTGAGCCATTTGGAGCAG
* * * * * * * *
82233315 CGATATTAAATTAGCTAACTCAGAGAGGATTGTTCATGATATTAAACCATATGAACTTAGGCTGC
1 CGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATGAACTTAAGTTGG
* * * *
82233380 AATCTTAGATCAGTGAG-GATATTAGAGCAA
66 AA-CTTAAATCAGTGAGCCAT-TTGGAGCAG
* * * *
82233410 TGATATTAAATCAGCTAACTCAGATAGGATTGTTCATGATAGTAGATCAAATGAACTT-AGATTG
1 CGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATGAACTTAAG-TTG
* * *
82233474 CGATCTTAAATCAGTGACCCATTTGGAGTAG
65 -GAACTTAAATCAGTGAGCCATTTGGAGCAG
* * *
82233505 GGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAATAAATCAAATCAACTT-AGCTTG
1 CGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATGAACTTAAG-TTG
* * *
82233569 CAATCCTAAATTC-GTGAGTCATTTGGAGCAG
65 GAA-CTTAAA-TCAGTGAGCCATTTGGAGCAG
* ** * *
82233600 CGATATTAAATCAGCTAACTCAGAGAAAATCATTCATGATAGTAAATCGAATGAACTTAGGTTGT
1 CGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATGAACTTAAGTTG-
* * *
82233665 GATA-TTAAATCAGGGAGTCATTTGGAGTAG
65 GA-ACTTAAATCAGTGAGCCATTTGGAGCAG
* * * * *
82233695 CGGTATTAAATCAGCTACCTTAGAGAATATTTTTCATGA
1 CGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGA
82233734 CAAATAAACT
Statistics
Matches: 344, Mismatches: 64, Indels: 22
0.80 0.15 0.05
Matches are distributed among these distances:
94 8 0.02
95 328 0.95
96 7 0.02
97 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (94 bp):
CGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATGAACTTAAGTTGG
AACTTAAATCAGTGAGCCATTTGGAGCAG
Found at i:82233462 original size:190 final size:189
Alignment explanation
Indices: 82233139--82233720 Score: 661
Period size: 190 Copynumber: 3.1 Consensus size: 189
82233129 TGGAAATAAA
* * * * *** **
82233139 CTAACTCAAATAGGATTGTTGATGATGATAAACCAAATGAATTTAGGCTATGATCTTAGATCAAC
1 CTAACTCAGAGAGGATTGTTCATGAT-ATAAACCAAATGAACTTAGGCTGCAATCTTAGATCAGT
* * *
82233204 AAGCAAATTAGAGAAACGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAGTAAATCA
65 GAGCATATTAGAGCAACGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAGTAAATCA
* * * *
82233269 AATGAACTTAAGTTGTGAACTTAAATCAACGAGCCATTTGAAGCAGCGATATTAAATTAG
130 AATGAACTTAAGTTGTGAACTTAAATCAGCGAGCCATTTGGAGTAGCGATATTAAATCAG
*
82233329 CTAACTCAGAGAGGATTGTTCATGATATTAAACCATATGAACTTAGGCTGCAATCTTAGATCAGT
1 CTAACTCAGAGAGGATTGTTCATGATA-TAAACCAAATGAACTTAGGCTGCAATCTTAGATCAGT
* * * *
82233394 GAGGATATTAGAGCAATGATATTAAATCAGCTAACTCAGATAGGATTGTTCATGATAGTAGATCA
65 GAGCATATTAGAGCAACGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAGTAAATCA
* * * * *
82233459 AATGAACTT-AGATTGCGATCTTAAATCAGTGACCCATTTGGAGTAGGGATATTAAATCAG
130 AATGAACTTAAG-TTGTGAACTTAAATCAGCGAGCCATTTGGAGTAGCGATATTAAATCAG
* * * * *
82233519 CTAACTCAGAGAAGATTGTTCATGATAATAAATCAAATCAACTTA-GCTTGCAATCCTAAATTC-
1 CTAACTCAGAGAGGATTGTTCATGAT-ATAAACCAAATGAACTTAGGC-TGCAATCTTAGA-TCA
* * * * **
82233582 GTGAGTCAT-TTGGAGCAGCGATATTAAATCAGCTAACTCAGAGAAAATCATTCATGATAGTAAA
63 GTGAG-CATATTAGAGCAACGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAGTAAA
* * * * *
82233646 TCGAATGAACTTAGGTTGTGATA-TTAAATCAGGGAGTCATTTGGAGTAGCGGTATTAAATCAG
127 TCAAATGAACTTAAGTTGTGA-ACTTAAATCAGCGAGCCATTTGGAGTAGCGATATTAAATCAG
* *
82233709 CTACCTTAGAGA
1 CTAACTCAGAGA
82233721 ATATTTTTCA
Statistics
Matches: 331, Mismatches: 53, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
189 5 0.02
190 320 0.97
191 6 0.02
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (189 bp):
CTAACTCAGAGAGGATTGTTCATGATATAAACCAAATGAACTTAGGCTGCAATCTTAGATCAGTG
AGCATATTAGAGCAACGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAGTAAATCAA
ATGAACTTAAGTTGTGAACTTAAATCAGCGAGCCATTTGGAGTAGCGATATTAAATCAG
Found at i:82233733 original size:285 final size:285
Alignment explanation
Indices: 82233221--82233733 Score: 640
Period size: 285 Copynumber: 1.8 Consensus size: 285
82233211 TTAGAGAAAC
* * * *
82233221 GATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAGTAAATCAAATGAACTTAAGTTGTG
1 GATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAATAAATCAAATCAACTTAAGTTGTC
* * ** **
82233286 AACTTAAATCAACGAGCCATTTGAAGCAGCGATATTAAATTAGCTAACTCAGAGAGGATTGTTCA
66 AACCTAAATCAACGAGCCATTTGAAGCAGCGATATTAAATCAGCTAACTCAGAGAAAATCATTCA
* * * * * *
82233351 TGATATTAAACCATATGAACTTAGGCTGCAATCTTAGATCAGTGAGGATATTAGAGCAATGATAT
131 TGATAGTAAACCATATGAACTTAGGCTGCAATATTAAATCAGGGAGCATATTAGAGCAACGATAT
* *
82233416 TAAATCAGCTAACTCAGATAGGATTGTTCATGATAGTAGATCAAATGAACTTAGATTGCGATCTT
196 TAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAGATCAAATGAACTTAGATTGCGATCTT
82233481 AAATCAGTGACCCATTTGGAGTAGG
261 AAATCAGTGACCCATTTGGAGTAGG
82233506 GATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAATAAATCAAATCAACTT-AGCTTG-
1 GATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAATAAATCAAATCAACTTAAG-TTGT
** * *
82233569 CAATCCTAAATTC-GTGAGTCATTTGGAGCAGCGATATTAAATCAGCTAACTCAGAGAAAATCAT
65 CAA-CCTAAA-TCAACGAGCCATTTGAAGCAGCGATATTAAATCAGCTAACTCAGAGAAAATCAT
* * ** * * *
82233633 TCATGATAGTAAATCGA-ATGAACTTAGGTTGTGATATTAAATCAGGGAGTCAT-TTGGAGTAGC
128 TCATGATAGTAAA-CCATATGAACTTAGGCTGCAATATTAAATCAGGGAG-CATATTAGAGCAAC
* * * * *
82233696 GGTATTAAATCAGCTACCTTAGAGAATATTTTTCATGA
191 GATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGA
82233734 CAAATAAACT
Statistics
Matches: 189, Mismatches: 34, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
284 4 0.02
285 179 0.95
286 6 0.03
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (285 bp):
GATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAATAAATCAAATCAACTTAAGTTGTC
AACCTAAATCAACGAGCCATTTGAAGCAGCGATATTAAATCAGCTAACTCAGAGAAAATCATTCA
TGATAGTAAACCATATGAACTTAGGCTGCAATATTAAATCAGGGAGCATATTAGAGCAACGATAT
TAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAGATCAAATGAACTTAGATTGCGATCTT
AAATCAGTGACCCATTTGGAGTAGG
Found at i:82246244 original size:27 final size:26
Alignment explanation
Indices: 82246214--82246276 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
82246204 AGATAATTAA
82246214 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
82246241 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
82246268 AATATAAAT
1 AATA-AAAT
82246277 AAAAAGGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:82246263 original size:15 final size:15
Alignment explanation
Indices: 82246243--82246272 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
82246233 ATAATCCTAA
*
82246243 TAATTATCTTAATAT
1 TAATTATCCTAATAT
82246258 TAATTATCCTAATAT
1 TAATTATCCTAATAT
82246273 AAATAAAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:82256805 original size:26 final size:27
Alignment explanation
Indices: 82256775--82256827 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
82256765 CTCGAAGTAT
82256775 TATAAGAAAACATATCT-ATTCTTTTA
1 TATAAGAAAACATATCTAATTCTTTTA
** *
82256801 TATAAGAAAGGATATCTAATTTTTTTA
1 TATAAGAAAACATATCTAATTCTTTTA
82256828 AAAAAAATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.43
Consensus pattern (27 bp):
TATAAGAAAACATATCTAATTCTTTTA
Found at i:82266897 original size:6 final size:6
Alignment explanation
Indices: 82266886--82266914 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
82266876 CCTTTGATGT
82266886 GGGATA GGGATA GGGATA GGGATA GGGAT
1 GGGATA GGGATA GGGATA GGGATA GGGAT
82266915 CGTGATGAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.52, T:0.17
Consensus pattern (6 bp):
GGGATA
Found at i:82268022 original size:38 final size:39
Alignment explanation
Indices: 82267962--82268036 Score: 91
Period size: 39 Copynumber: 1.9 Consensus size: 39
82267952 AAAAAATAGT
** * *
82267962 AGAGGATTTTTTTCAACAG-AAAATATTTTGCAACAGCC
1 AGAGGATTTTCCTCAACAGAAAAATATTCTACAACAGCC
82268000 AGAGGATTTTCCTCAATC-GAAAAATATTCTACAACAG
1 AGAGGATTTTCCTCAA-CAGAAAAATATTCTACAACAG
82268037 AAAATATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
38 15 0.48
39 16 0.52
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (39 bp):
AGAGGATTTTCCTCAACAGAAAAATATTCTACAACAGCC
Found at i:82273436 original size:14 final size:14
Alignment explanation
Indices: 82273417--82273451 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
82273407 GTTTGCATGT
*
82273417 AAAATGGTTTTCGG
1 AAAATGATTTTCGG
*
82273431 AAAATGATTTTTGG
1 AAAATGATTTTCGG
82273445 AAAATGA
1 AAAATGA
82273452 GTTATTTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.40, C:0.03, G:0.23, T:0.34
Consensus pattern (14 bp):
AAAATGATTTTCGG
Found at i:82279182 original size:20 final size:19
Alignment explanation
Indices: 82279128--82279183 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 19
82279118 CAAAATTATT
**
82279128 ATTTTAGAAAATTTATAAA
1 ATTTTAGAATTTTTATAAA
82279147 ATTTTA-ACATTCTTTATAAA
1 ATTTTAGA-ATT-TTTATAAA
*
82279167 TTTTTTAGAATTTTTAT
1 -ATTTTAGAATTTTTAT
82279184 TTTTTTAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
18 1 0.03
19 7 0.23
20 13 0.43
21 8 0.27
22 1 0.03
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.54
Consensus pattern (19 bp):
ATTTTAGAATTTTTATAAA
Found at i:82285733 original size:39 final size:39
Alignment explanation
Indices: 82285690--82285859 Score: 272
Period size: 39 Copynumber: 4.3 Consensus size: 39
82285680 GGACTAAGAT
82285690 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
82285729 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
*
82285768 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
* *
82285807 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAG-C
82285847 CCGAAGGCATTTG
1 CCGAAGGCATTTG
82285860 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
38 3 0.02
39 107 0.86
40 14 0.11
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
Found at i:82285787 original size:78 final size:79
Alignment explanation
Indices: 82285638--82285865 Score: 279
Period size: 78 Copynumber: 2.9 Consensus size: 79
82285628 TTGAATGATG
* * * * * *
82285638 TCCGGGCTAAGTCCTGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
82285700 TTGTGCGAGATACTAAT
63 TTGTACGAGATACTAAT
*
82285717 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCATT
82285779 TGTACGAGATACTAAT
64 TGTACGAGATACTAAT
*
82285795 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
*
82285860 AACGAG
66 TACGAG
82285866 GAGCTATATC
Statistics
Matches: 132, Mismatches: 9, Indels: 16
0.84 0.06 0.10
Matches are distributed among these distances:
77 1 0.01
78 79 0.60
79 44 0.33
80 7 0.05
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TACGAGATACTAAT
Found at i:82301683 original size:44 final size:44
Alignment explanation
Indices: 82301610--82301697 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 44
82301600 GGATTTTATC
* *
82301610 TTCCTGAAGTTGTAGTGGAGTAAGATAAAGCTACAAATT-CTATA
1 TTCCTGAAGTTGCAGTGGAATAAGATAAAGCTAC-AATTCCTATA
*
82301654 TTCCTGAAGTTGCAGT-GAATCAGATTAAAGCTACAATTCCTATA
1 TTCCTGAAGTTGCAGTGGAATAAGA-TAAAGCTACAATTCCTATA
82301698 CCCTTGAAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
43 10 0.26
44 29 0.74
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (44 bp):
TTCCTGAAGTTGCAGTGGAATAAGATAAAGCTACAATTCCTATA
Found at i:82301783 original size:94 final size:93
Alignment explanation
Indices: 82301680--82302087 Score: 313
Period size: 94 Copynumber: 4.3 Consensus size: 93
82301670 GAATCAGATT
* * * * *
82301680 AAAGCTACAATTCCTATACCCTTGAAGTTTTAGGGGGTCGGAATAAAATTACAATTGTGAATCTT
1 AAAGCTACAAATCCTATACCCCTGAAGTTGTAGGGAGT-AGAATAAAATTACAATTGTGAATCTT
*
82301745 ATCTCTCTGAAGTTACAGTGGAGCAAGAA
65 ATCTCCCTGAAGTTACAGTGGAGCAAGAA
* * * * * * * * * * *
82301774 AAAACTACAAACCCTATATCCTTAAAGTTGTAGTGGAATAGATTGAAACTACAATAGCGAATCTT
1 AAAGCTACAAATCCTATACCCCTGAAGTTGTAG-GGAGTAGAATAAAATTACAATTGTGAATCTT
*
82301839 ATC-CCCTTGAAGTTACAGTGGAGCAAGAT
65 ATCTCCC-TGAAGTTACAGTGGAGCAAGAA
* * ** *
82301868 AAAGCTACAAGTCCTATACCCCTGAAGTTGCA-ATACGTTAGAATAAAATTACAA-TGTCAAATC
1 AAAGCTACAAATCCTATACCCCTGAAGTTGTAGGGA-G-TAGAATAAAATTACAATTGT-GAATC
*
82301931 TTATCTCCCTGAAGATACAGTGGAGCAA-AA
63 TTATCTCCCTGAAGTTACAGTGGAGCAAGAA
* * * * ** * ** * *
82301961 TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGG-GTCAGATTGAAGCTATAACAGCGAATT
1 -AAAGCTACAAATCCTATACCCCTGAAGTTGTAG-GGAGT-AGAATAAAATTACAATTGTGAATC
* * ** *
82302025 TTGTCTCCTTGAAGTTACAGTGGAATAAGAT
63 TTATCTCCCTGAAGTTACAGTGGAGCAAGAA
* * *
82302056 GAAGTTACAAATCCTATACCCTTGAAGTTGTA
1 AAAGCTACAAATCCTATACCCCTGAAGTTGTA
82302088 ATGGAATAGA
Statistics
Matches: 246, Mismatches: 56, Indels: 24
0.75 0.17 0.07
Matches are distributed among these distances:
92 1 0.00
93 5 0.02
94 232 0.94
95 8 0.03
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (93 bp):
AAAGCTACAAATCCTATACCCCTGAAGTTGTAGGGAGTAGAATAAAATTACAATTGTGAATCTTA
TCTCCCTGAAGTTACAGTGGAGCAAGAA
Found at i:82301886 original size:188 final size:188
Alignment explanation
Indices: 82301658--82302085 Score: 479
Period size: 188 Copynumber: 2.3 Consensus size: 188
82301648 TCTATATTCC
* * ** * ** *
82301658 TGAAGTTGCAGT-GAATC-AGATTAAAGCTACAATTCCTATACCCTTGAAGTTTTAGGGGGTCGG
1 TGAAGTTACAGTGGAA-CAAGA-TAAAGCTACAAATCCTATACCCTTGAAGTTGCAAGACGTCAG
* * *
82301721 AATAAAATTACAATTGT-GAATCTTATCTCTCTGAAGTTACAGTGGAGCAAGAA-AAAACTACAA
64 AATAAAATTACAA-TGTCAAATCTTATCTCCCTGAAGATACAGTGGAGCAA-AATAAAACTACAA
* * * *
82301784 ACCCTATATCCTTAAAGTTGTAGTGGAAT-AGATTGAAACTACAATAGCGAATCTTATCCCCT
127 ACCCTATACCCCTAAAGTTGCAGTGG-ATCAGATTGAAACTACAACAGCGAATCTTATCCCCT
* * * * *
82301846 TGAAGTTACAGTGGAGCAAGATAAAGCTACAAGTCCTATACCCCTGAAGTTGCAATACGTTAGAA
1 TGAAGTTACAGTGGAACAAGATAAAGCTACAAATCCTATACCCTTGAAGTTGCAAGACGTCAGAA
* * *
82301911 TAAAATTACAATGTCAAATCTTATCTCCCTGAAGATACAGTGGAGCAAAATGAAGCTACAAATCC
66 TAAAATTACAATGTCAAATCTTATCTCCCTGAAGATACAGTGGAGCAAAATAAAACTACAAACCC
* * * * * * *
82301976 TATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGCTATAACAGCGAATTTTGTCTCCT
131 TATACCCCTAAAGTTGCAGTGGATCAGATTGAAACTACAACAGCGAATCTTATCCCCT
* * *
82302034 TGAAGTTACAGTGGAATAAGATGAAGTTACAAATCCTATACCCTTGAAGTTG
1 TGAAGTTACAGTGGAACAAGATAAAGCTACAAATCCTATACCCTTGAAGTTG
82302086 TAATGGAATA
Statistics
Matches: 200, Mismatches: 35, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
187 6 0.03
188 189 0.94
189 5 0.03
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.28
Consensus pattern (188 bp):
TGAAGTTACAGTGGAACAAGATAAAGCTACAAATCCTATACCCTTGAAGTTGCAAGACGTCAGAA
TAAAATTACAATGTCAAATCTTATCTCCCTGAAGATACAGTGGAGCAAAATAAAACTACAAACCC
TATACCCCTAAAGTTGCAGTGGATCAGATTGAAACTACAACAGCGAATCTTATCCCCT
Found at i:82302099 original size:94 final size:93
Alignment explanation
Indices: 82301739--82302152 Score: 418
Period size: 94 Copynumber: 4.4 Consensus size: 93
82301729 TACAATTGTG
** * * * * *
82301739 AATCTTATCT-CTCTGAAGTTACAGTGGAGCAAGAAAAAACTACAAACCCTATATCCTTAAAGTT
1 AATCTTATCTCCT-TGAAGTTACAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTT
* * * *
82301803 GTAGTGGAATAGATTGAAACTACAATAGCG
65 GCAATGG-ATAGATTGAAACTACAACAGCA
* * *
82301833 AATCTTATCCCCTTGAAGTTACAGTGGAGCAAGATAAAGCTACAAGTCCTATACCCCTGAAGTTG
1 AATCTTATCTCCTTGAAGTTACAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTG
* * * * * *
82301898 CAATACGTTAGAATAAAATTACAA-TGTCA
66 CAAT-GGATAGATTGAAACTACAACAG-CA
* * *
82301927 AATCTTATCTCCCTGAAGATACAGTGGAGCAAAATGAAGCTACAAATCCTATACCCCTGAAGTTG
1 AATCTTATCTCCTTGAAGTTACAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTG
* * * * *
82301992 CAGTGGGTCAGATTGAAGCTATAACAGCG
66 CAATGGAT-AGATTGAAACTACAACAGCA
* * ** * *
82302021 AATTTTGTCTCCTTGAAGTTACAGTGGAATAAGATGAAGTTACAAATCCTATACCCTTGAAGTTG
1 AATCTTATCTCCTTGAAGTTACAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTG
*
82302086 TAATGGAATAGATTGAAACTACAACAGCA
66 CAATGG-ATAGATTGAAACTACAACAGCA
* * *
82302115 AACCTTATCTCCTTGAAGTTGCAATGGAGCAAGATGAA
1 AATCTTATCTCCTTGAAGTTACAGTGGAGCAAGATGAA
82302153 ACTGTGACAC
Statistics
Matches: 259, Mismatches: 55, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
93 3 0.01
94 251 0.97
95 5 0.02
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (93 bp):
AATCTTATCTCCTTGAAGTTACAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTG
CAATGGATAGATTGAAACTACAACAGCA
Found at i:82303446 original size:15 final size:15
Alignment explanation
Indices: 82303428--82303458 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
82303418 TAATTTCGTC
82303428 CTATTTCATTTTTAT
1 CTATTTCATTTTTAT
*
82303443 CTATTTTATTTTTAT
1 CTATTTCATTTTTAT
82303458 C
1 C
82303459 CCTTTTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.13, G:0.00, T:0.68
Consensus pattern (15 bp):
CTATTTCATTTTTAT
Found at i:82303464 original size:15 final size:15
Alignment explanation
Indices: 82303430--82303468 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
82303420 ATTTCGTCCT
* *
82303430 ATTTCATTTTTATCT
1 ATTTTATTTTTATCC
82303445 ATTTTATTTTTATCC
1 ATTTTATTTTTATCC
*
82303460 CTTTTATTT
1 ATTTTATTT
82303469 CATTTTCGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.18, C:0.13, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTATTTTTATCC
Found at i:82304081 original size:19 final size:17
Alignment explanation
Indices: 82304039--82304084 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 17
82304029 TATTATTATT
82304039 TCTTATTATTGTATTCA
1 TCTTATTATTGTATTCA
*
82304056 TCATATTATTGTCATTTCA
1 TCTTATTATTGT-A-TTCA
*
82304075 TTTTATTATT
1 TCTTATTATT
82304085 TATGTTGTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 11 0.46
18 1 0.04
19 12 0.50
ACGTcount: A:0.24, C:0.11, G:0.04, T:0.61
Consensus pattern (17 bp):
TCTTATTATTGTATTCA
Found at i:82307903 original size:12 final size:12
Alignment explanation
Indices: 82307886--82307910 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
82307876 AACAACATAT
82307886 ATATATATATAC
1 ATATATATATAC
82307898 ATATATATATAC
1 ATATATATATAC
82307910 A
1 A
82307911 CAATGAAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (12 bp):
ATATATATATAC
Found at i:82308318 original size:26 final size:27
Alignment explanation
Indices: 82308279--82308335 Score: 73
Period size: 26 Copynumber: 2.1 Consensus size: 27
82308269 ATTATTCAAA
*
82308279 ATAATAATTAATTTAT-ATAATTAATAT
1 ATAAAAATTAATTT-TGATAATTAATAT
*
82308306 ATAAAAATT-ATTTTGATAATTCATAT
1 ATAAAAATTAATTTTGATAATTAATAT
82308332 ATAA
1 ATAA
82308336 TACTAATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
25 1 0.04
26 18 0.67
27 8 0.30
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (27 bp):
ATAAAAATTAATTTTGATAATTAATAT
Found at i:82311089 original size:40 final size:40
Alignment explanation
Indices: 82311020--82311244 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
82311010 AAACCAAGTA
* * *
82311020 CCTTCGGGATTTAG-CCGGATATCGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
82311059 CCTTCGGGACTTAACCCGGATATAGTAACTCACACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
82311099 CCTTCGGGTCTTAGCCTGGAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
82311139 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TA--ACTCGCACAAATG
*
82311182 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
82311222 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
82311245 CATCCGAATA
Statistics
Matches: 158, Mismatches: 24, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
39 12 0.08
40 109 0.69
42 1 0.01
43 36 0.23
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:82311221 original size:83 final size:80
Alignment explanation
Indices: 82311020--82311244 Score: 290
Period size: 83 Copynumber: 2.8 Consensus size: 80
82311010 AAACCAAGTA
* * * * *
82311020 CCTTCGGGATTTAG-CCGGATATCGCAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
* *
82311084 TAACTCACACACATG
66 AAACTCACACAAATG
* * * * *
82311099 CCTTCGGGTCTTAGCCTGGAAATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
82311164 CAACTACTCGCACAAATG
66 -AA--ACTCACACAAATG
*
82311182 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
82311245 CATCCGAATA
Statistics
Matches: 123, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 12 0.10
80 42 0.34
81 1 0.01
83 68 0.55
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
AAACTCACACAAATG
Found at i:82319371 original size:40 final size:40
Alignment explanation
Indices: 82319310--82319534 Score: 247
Period size: 40 Copynumber: 5.6 Consensus size: 40
82319300 AAACCAAGTA
* * *
82319310 CCTTCGGGATTTAG-ACGGATATCGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* * * * *
82319349 CCTTCGGTACTTAACCCGGATATAGTAACTCACACACATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* * * *
82319389 CCTTCGGGTCTTAGCCTGGAAATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATG
* * *
82319429 CCTTCGGGACTTAGCCCGGGTATAGTAACTACTCGCATAAATG
1 CCTTCGGGACTTAGCCC-GG-ATA-TAGCAACTCGCACAAATG
* *
82319472 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
82319512 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
82319535 CATCCGAATA
Statistics
Matches: 152, Mismatches: 28, Indels: 11
0.80 0.15 0.06
Matches are distributed among these distances:
39 11 0.07
40 101 0.66
41 5 0.03
42 5 0.03
43 30 0.20
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
Found at i:82319515 original size:83 final size:80
Alignment explanation
Indices: 82319310--82319534 Score: 272
Period size: 83 Copynumber: 2.8 Consensus size: 80
82319300 AAACCAAGTA
* * * * * * *
82319310 CCTTCGGGATTTAG-ACGGATATCGCAACTCGCACAAATGCCTTCGGTACTTAACCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
82319374 TAACTCACACACATG
66 TAACTCACACAAATG
* * * * *
82319389 CCTTCGGGTCTTAGCCTGGAAATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
* *
82319454 TAACTACTCGCATAAATG
66 T-A--ACTCACACAAATG
*
82319472 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
82319535 CATCCGAATA
Statistics
Matches: 121, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 12 0.10
80 41 0.34
81 1 0.01
83 67 0.55
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTCACACAAATG
Found at i:82326629 original size:24 final size:23
Alignment explanation
Indices: 82326585--82326641 Score: 55
Period size: 24 Copynumber: 2.5 Consensus size: 23
82326575 TTTTACTTAT
* *
82326585 TTTCTTATTACTTAGTTATTTACG
1 TTTCTTATTACTCAGTAATTT-CG
82326609 TTTCTTATTCACTCA-TAATTTCG
1 TTTCTTATT-ACTCAGTAATTTCG
*
82326632 -TTATTATTAC
1 TTTCTTATTAC
82326642 GTATAAGCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 2 0.07
22 7 0.24
23 2 0.07
24 14 0.48
25 4 0.14
ACGTcount: A:0.23, C:0.16, G:0.05, T:0.56
Consensus pattern (23 bp):
TTTCTTATTACTCAGTAATTTCG
Found at i:82327744 original size:7 final size:7
Alignment explanation
Indices: 82327724--82327756 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
82327714 CAACTATTAG
82327724 TATAATA
1 TATAATA
82327731 -ATAATA
1 TATAATA
*
82327737 TTTAATA
1 TATAATA
82327744 TATAATA
1 TATAATA
82327751 TATAAT
1 TATAAT
82327757 GTACTACTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (7 bp):
TATAATA
Found at i:82328052 original size:17 final size:18
Alignment explanation
Indices: 82328021--82328054 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
82328011 AATTTAACTT
82328021 TAATTAAATTATTTAAAA
1 TAATTAAATTATTTAAAA
*
82328039 TAATT-AATTTTTTAAA
1 TAATTAAATTATTTAAA
82328055 TTATAAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATTAAATTATTTAAAA
Found at i:82329198 original size:6 final size:6
Alignment explanation
Indices: 82329187--82329240 Score: 56
Period size: 6 Copynumber: 8.7 Consensus size: 6
82329177 ATTCATTATC
* *
82329187 AAATAA AAATAA AAATAA AAATATA GAATCAA AACT-A AAATAA ATAATAA
1 AAATAA AAATAA AAATAA AAATA-A AAAT-AA AAATAA AAATAA A-AATAA
82329237 AAAT
1 AAAT
82329241 TAGATTAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
5 4 0.10
6 22 0.55
7 13 0.32
8 1 0.03
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.20
Consensus pattern (6 bp):
AAATAA
Found at i:82333368 original size:14 final size:14
Alignment explanation
Indices: 82333349--82333378 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
82333339 AAATCAAAGG
82333349 GATGGAGATTTAGA
1 GATGGAGATTTAGA
82333363 GATGGAGATTTAGA
1 GATGGAGATTTAGA
82333377 GA
1 GA
82333379 AGCAAGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.37, T:0.27
Consensus pattern (14 bp):
GATGGAGATTTAGA
Found at i:82333530 original size:14 final size:14
Alignment explanation
Indices: 82333504--82333537 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
82333494 TGGGGATACC
82333504 GATTTTA-GGGGAA
1 GATTTTAGGGGGAA
82333517 GATTTTAGGGGGAA
1 GATTTTAGGGGGAA
82333531 -ATTTTAG
1 GATTTTAG
82333538 ACGTTCCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 14 0.70
14 6 0.30
ACGTcount: A:0.29, C:0.00, G:0.35, T:0.35
Consensus pattern (14 bp):
GATTTTAGGGGGAA
Found at i:82334955 original size:21 final size:22
Alignment explanation
Indices: 82334919--82334959 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
82334909 TGTTTTTTGG
82334919 AGTTTAGGGTTTTAGGGGTTAT
1 AGTTTAGGGTTTTAGGGGTTAT
*
82334941 AGTTTAGTG-TTTAGGGGTT
1 AGTTTAGGGTTTTAGGGGTT
82334960 TTTAGACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.46
Consensus pattern (22 bp):
AGTTTAGGGTTTTAGGGGTTAT
Found at i:82335155 original size:40 final size:41
Alignment explanation
Indices: 82335046--82335173 Score: 197
Period size: 41 Copynumber: 3.2 Consensus size: 41
82335036 ATTATATGAC
* *
82335046 TTTTAGCGGCGTTTTATCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* *
82335087 TTTTAGCGGCGTTTTTCCAAAAGTGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*
82335128 TTTTAGCTG-GTTTTACCAAAAGCGCCGCTAATGCTCT-GT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
82335167 TTTTAGC
1 TTTTAGC
82335174 AGCATTTTTT
Statistics
Matches: 80, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 9 0.11
40 26 0.32
41 45 0.56
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:82335222 original size:81 final size:82
Alignment explanation
Indices: 82335046--82335222 Score: 200
Period size: 81 Copynumber: 2.2 Consensus size: 82
82335036 ATTATATGAC
* * * *
82335046 TTTTAGCGGCGTTTTATCGAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTTCCAAAAGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCAGCGTTTTTCCAAAAGC
*
82335111 GCCGCTAATGCTCTGGT
66 GCCACTAATGCTCTGGT
* * **
82335128 TTTTAGCTG-GTTTTACCAAAAGCGCCGCTAATGCTCT-GTTTTTAGCAGCATTTTTTGTTAAAA
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCAGC-GTTTTT-CCAAAA
* * *
82335191 -CGCCATTATTGTTCT-GT
64 GCGCCACTAATGCTCTGGT
82335208 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
82335223 TGGTAAAACG
Statistics
Matches: 79, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
80 21 0.27
81 46 0.58
82 12 0.15
ACGTcount: A:0.18, C:0.20, G:0.22, T:0.40
Consensus pattern (82 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCAGCGTTTTTCCAAAAGC
GCCACTAATGCTCTGGT
Found at i:82335241 original size:40 final size:41
Alignment explanation
Indices: 82335046--82335244 Score: 176
Period size: 41 Copynumber: 4.9 Consensus size: 41
82335036 ATTATATGAC
* *
82335046 TTTTAGCGGCGTTTTAT-CGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTT-TGCCAAAACGCCGCTAATGCTCTGGT
*
82335087 TTTTAGCGGCGTTTTT-CCAAAAGTGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTGCCAAAA-CGCCGCTAATGCTCTGGT
* *
82335128 TTTTAGCTG-G-TTTTACCAAAAGCGCCGCTAATGCTCT-GT
1 TTTTAGCGGCGTTTTTGCCAAAA-CGCCGCTAATGCTCTGGT
* * ** ** * *
82335167 TTTTAGCAGCATTTTTTGTTAAAACGCCATTATTGTTCT-GT
1 TTTTAGCGGC-GTTTTTGCCAAAACGCCGCTAATGCTCTGGT
** *
82335208 TTTTAGCGGCGTTTTTGGTAAAACGCCGCTATTGCTC
1 TTTTAGCGGCGTTTTTGCCAAAACGCCGCTAATGCTC
82335245 CTTGTTTTAT
Statistics
Matches: 133, Mismatches: 20, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
39 14 0.11
40 49 0.37
41 62 0.47
42 8 0.06
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.39
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTTGCCAAAACGCCGCTAATGCTCTGGT
Found at i:82335572 original size:24 final size:26
Alignment explanation
Indices: 82335518--82335586 Score: 72
Period size: 25 Copynumber: 2.7 Consensus size: 26
82335508 ATTGTTATCG
* * * *
82335518 TATAAAAGTAAAATGAATTATTACAT
1 TATAAAATTAAAATCATTTATAACAT
82335544 T-TAAAATTAAAAT-ATTTATAAC-T
1 TATAAAATTAAAATCATTTATAACAT
82335567 TATAAAATTCAAAATCATTT
1 TATAAAATT-AAAATCATTT
82335587 GAATCCATTA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
23 2 0.05
24 14 0.38
25 16 0.43
26 5 0.14
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (26 bp):
TATAAAATTAAAATCATTTATAACAT
Found at i:82336516 original size:15 final size:15
Alignment explanation
Indices: 82336498--82336529 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
82336488 AATGAGCTCG
82336498 AAAAATATGAGTCTA
1 AAAAATATGAGTCTA
*
82336513 AAAAATTTGAGTCTA
1 AAAAATATGAGTCTA
82336528 AA
1 AA
82336530 GTAAGTCCGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.06, G:0.12, T:0.28
Consensus pattern (15 bp):
AAAAATATGAGTCTA
Found at i:82355550 original size:27 final size:29
Alignment explanation
Indices: 82355488--82355550 Score: 78
Period size: 27 Copynumber: 2.2 Consensus size: 29
82355478 AAATAGAGGT
*
82355488 TGAGATTTAAGTTGTAGATGAATTATATA
1 TGAGGTTTAAGTTGTAGATGAATTATATA
*
82355517 TGTGGTTTAAG-TGTA-ATGAATTATA-A
1 TGAGGTTTAAGTTGTAGATGAATTATATA
82355543 TGAAGGTT
1 TG-AGGTT
82355551 ATCTAGCAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 3 0.10
27 14 0.47
28 4 0.13
29 9 0.30
ACGTcount: A:0.35, C:0.00, G:0.24, T:0.41
Consensus pattern (29 bp):
TGAGGTTTAAGTTGTAGATGAATTATATA
Found at i:82358921 original size:29 final size:29
Alignment explanation
Indices: 82358888--82358948 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
82358878 CATGTTTTTA
82358888 TTTAAATTTTTATAA-AAAACATT-TGAATT
1 TTTAAATTTTTATAATAAAA-ATTGT-AATT
*
82358917 TTTAAATTTTTTTAATAAAAATTGTAATT
1 TTTAAATTTTTATAATAAAAATTGTAATT
82358946 TTT
1 TTT
82358949 TATAAAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 24 0.83
30 5 0.17
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (29 bp):
TTTAAATTTTTATAATAAAAATTGTAATT
Found at i:82358949 original size:20 final size:20
Alignment explanation
Indices: 82358924--82358992 Score: 86
Period size: 21 Copynumber: 3.4 Consensus size: 20
82358914 ATTTTTAAAT
82358924 TTTTTTAATAAAAATTGTAA
1 TTTTTTAATAAAAATTGTAA
*
82358944 TTTTTTATAAAAAAATTGTAA
1 TTTTTTA-ATAAAAATTGTAA
*
82358965 TTTTTT-ATAAAAAATTATGAA
1 TTTTTTAAT-AAAAATTGT-AA
82358986 TTTTTTA
1 TTTTTTA
82358993 TTTTTATGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
19 1 0.02
20 15 0.36
21 26 0.62
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.52
Consensus pattern (20 bp):
TTTTTTAATAAAAATTGTAA
Found at i:82359023 original size:29 final size:27
Alignment explanation
Indices: 82358966--82359028 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
82358956 AAATTGTAAT
*
82358966 TTTTTATAAAAAATTATGAATTTTTTA
1 TTTTTATAAAAAATTATAAATTTTTTA
* *
82358993 TTTTTATGAAATATTATAAAATTTTTATA
1 TTTTTATAAAAAATTAT-AAATTTTT-TA
82359022 TTTTTAT
1 TTTTTAT
82359029 TATATACTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
27 15 0.48
28 7 0.23
29 9 0.29
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (27 bp):
TTTTTATAAAAAATTATAAATTTTTTA
Found at i:82359436 original size:15 final size:15
Alignment explanation
Indices: 82359418--82359456 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
82359408 TAACCTTATT
82359418 ATTTTTTAATTTAAA
1 ATTTTTTAATTTAAA
*
82359433 ATTTTTATAATTTTAA
1 ATTTTT-TAATTTAAA
*
82359449 TTTTTTTA
1 ATTTTTTA
82359457 GATCTTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
ATTTTTTAATTTAAA
Found at i:82364772 original size:18 final size:18
Alignment explanation
Indices: 82364745--82364788 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
82364735 TACATCCAAT
82364745 ACAA-CCAATTAAACCCA
1 ACAACCCAATTAAACCCA
* *
82364762 ATAACCCAATTTAACCCA
1 ACAACCCAATTAAACCCA
82364780 ACAACCCAA
1 ACAACCCAA
82364789 GCTACCCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 3 0.13
18 20 0.87
ACGTcount: A:0.50, C:0.36, G:0.00, T:0.14
Consensus pattern (18 bp):
ACAACCCAATTAAACCCA
Found at i:82365233 original size:11 final size:11
Alignment explanation
Indices: 82365203--82365245 Score: 54
Period size: 10 Copynumber: 4.0 Consensus size: 11
82365193 TCTCACCTAT
82365203 ATATATATAAAA
1 ATATA-ATAAAA
*
82365215 ACAT-ATAAAA
1 ATATAATAAAA
82365225 ATATAATAAAA
1 ATATAATAAAA
82365236 ATATAA-AAAA
1 ATATAATAAAA
82365246 GGGGAAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 13 0.46
11 12 0.43
12 3 0.11
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (11 bp):
ATATAATAAAA
Found at i:82366276 original size:26 final size:23
Alignment explanation
Indices: 82366227--82366274 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
82366217 TTATTATTAT
*
82366227 TTCTAATATATATTATGTAAATA
1 TTCTAATATATATTATATAAATA
*
82366250 TTCTAATACTATATTATATATATA
1 TTCTAATA-TATATTATATAAATA
82366274 T
1 T
82366275 ATATTTTTCG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (23 bp):
TTCTAATATATATTATATAAATA
Found at i:82366586 original size:21 final size:22
Alignment explanation
Indices: 82366556--82366626 Score: 60
Period size: 23 Copynumber: 3.3 Consensus size: 22
82366546 TATATTATCC
82366556 ATGTTATTATTAATATTA-GTAT
1 ATGTT-TTATTAATATTAGGTAT
*
82366578 ATGTTTTATT-AT-TTATGTAT
1 ATGTTTTATTAATATTAGGTAT
* *
82366598 ATATCTTTAATACATA-TAGGTAT
1 ATGT-TTTATTA-ATATTAGGTAT
82366621 ATGTTT
1 ATGTTT
82366627 ATGTAATGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
19 3 0.08
20 9 0.22
21 10 0.25
22 7 0.17
23 11 0.28
ACGTcount: A:0.32, C:0.03, G:0.10, T:0.55
Consensus pattern (22 bp):
ATGTTTTATTAATATTAGGTAT
Found at i:82368204 original size:36 final size:35
Alignment explanation
Indices: 82368151--82368222 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 35
82368141 ATGATAATTA
82368151 TGTGTTGTTTTGTCTTCTCTTCTACTTTTTATTTT
1 TGTGTTGTTTTGTCTTCTCTTCTACTTTTTATTTT
82368186 TGTGTTGTTTTTGTCTTCTCTTCTACTTTTTATTTT
1 TGTGTTG-TTTTGTCTTCTCTTCTACTTTTTATTTT
82368222 T
1 T
82368223 TAAATATTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 7 0.19
36 29 0.81
ACGTcount: A:0.06, C:0.14, G:0.11, T:0.69
Consensus pattern (35 bp):
TGTGTTGTTTTGTCTTCTCTTCTACTTTTTATTTT
Found at i:82368233 original size:36 final size:36
Alignment explanation
Indices: 82368158--82368233 Score: 109
Period size: 36 Copynumber: 2.1 Consensus size: 36
82368148 TTATGTGTTG
** *
82368158 TTTTGTCTTCTCTTCTACTTTTTATTTTTGTGTTGT
1 TTTTGTCTTCTCTTCTACTTTTTATTTTTGTAATAT
82368194 TTTTGTCTTCTCTTCTACTTTTTATTTTT-TAAATAT
1 TTTTGTCTTCTCTTCTACTTTTTATTTTTGT-AATAT
82368230 TTTT
1 TTTT
82368234 TATGCAAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
35 1 0.03
36 35 0.97
ACGTcount: A:0.11, C:0.13, G:0.07, T:0.70
Consensus pattern (36 bp):
TTTTGTCTTCTCTTCTACTTTTTATTTTTGTAATAT
Found at i:82374162 original size:41 final size:41
Alignment explanation
Indices: 82374116--82374193 Score: 102
Period size: 41 Copynumber: 1.9 Consensus size: 41
82374106 ACAACTTACT
*
82374116 TGATATAATATACCAACAAGAAGCTTGCTAGGAACAAAGCA
1 TGATATAATACACCAACAAGAAGCTTGCTAGGAACAAAGCA
*** * *
82374157 TGATATAATACACCGGTACGAAGCTTGCTAGGCACAA
1 TGATATAATACACCAACAAGAAGCTTGCTAGGAACAA
82374194 TGTAATAGAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 31 1.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (41 bp):
TGATATAATACACCAACAAGAAGCTTGCTAGGAACAAAGCA
Found at i:82374587 original size:30 final size:30
Alignment explanation
Indices: 82374551--82374610 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
82374541 TAAATAAATA
82374551 AATAACAAATAACAAAAGACTATCATCTTC
1 AATAACAAATAACAAAAGACTATCATCTTC
*
82374581 AATAACAAATAACAAAAGACTGTCATCTTC
1 AATAACAAATAACAAAAGACTATCATCTTC
82374611 TTTCTTTTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.52, C:0.20, G:0.05, T:0.23
Consensus pattern (30 bp):
AATAACAAATAACAAAAGACTATCATCTTC
Found at i:82382122 original size:49 final size:45
Alignment explanation
Indices: 82381878--82382189 Score: 205
Period size: 46 Copynumber: 6.7 Consensus size: 45
82381868 TTTGTGCGCT
* * *
82381878 AGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCACATT-ATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG---C-TTGATGATAGTC
** * * *
82381924 AGTACAAGACCATGTCTGGGACATGGCAACGGCATTGA-GAAGAGAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGATG-ATAG-TC
* * *
82381971 TAGTGTAAGA-TATGTCTGGGATAT-GCATCGGCCTCGA-GAT-GTAAAC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTTGATGATAGT---C
*
82382017 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTATGA-GATGTGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCT-TGATGAT-AGTC
82382062 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCGATTTCGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTT-GA--T-GATAGTC
* ** *
82382111 AGTGTAAGACCATGTCTAGGACATGGCATCAACTTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAT-GAT-AGTC
*
82382158 AGTGTAAGACCATGTCTGGAACATGGCATCGG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG
82382190 TATTACACCC
Statistics
Matches: 219, Mismatches: 26, Indels: 41
0.77 0.09 0.14
Matches are distributed among these distances:
44 10 0.05
45 24 0.11
46 72 0.33
47 59 0.27
48 16 0.07
49 35 0.16
50 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATGATAGTC
Found at i:82382170 original size:96 final size:93
Alignment explanation
Indices: 82382018--82382189 Score: 247
Period size: 96 Copynumber: 1.8 Consensus size: 93
82382008 GATGTAAACT
* ** * * *
82382018 AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGTCAGTGTAAGACCATGTCTGGGA
1 AGTGTAAGACATGTCTAGGACATGCATCAACTATGAGATGAGCCAGTGTAAGACCATGTCTGGAA
82382083 CATGGCATCGGCTTCGATTTCGATAGTC
66 CATGGCATCGGCTTCGATTTCGATAGTC
82382111 AGTGTAAGACCATGTCTAGGACATGGCATCAACT-TGATGGATGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCAACTATGA--GATGAGCCAGTGTAAGACCATGTCT
82382175 GGAACATGGCATCGG
62 GGAACATGGCATCGG
82382190 TATTACACCC
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
93 9 0.13
94 16 0.23
95 7 0.10
96 37 0.54
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.26
Consensus pattern (93 bp):
AGTGTAAGACATGTCTAGGACATGCATCAACTATGAGATGAGCCAGTGTAAGACCATGTCTGGAA
CATGGCATCGGCTTCGATTTCGATAGTC
Found at i:82382182 original size:47 final size:47
Alignment explanation
Indices: 82381929--82382189 Score: 222
Period size: 46 Copynumber: 5.6 Consensus size: 47
82381919 GAGCCAGTAC
*
82381929 AAGACCATGTCTGGGACATGGCAACGGCATTGA-GAAGA-GAG-CTAGTGT
1 AAGACCATGTCTGGGACATGGCATCGGC-TTGATG--GATGAGTC-AGTGT
* * * **
82381977 AAGA-TATGTCTGGGATAT-GCATCGGCCTCGA--GATGTAAACTAGTGT
1 AAGACCATGTCTGGGACATGGCATCGG-CTTGATGGATG-AGTC-AGTGT
*
82382023 AAGA-CATGTCTGGGACAT-GCATCGGC-T-ATGAGATGTGTCAGTGT
1 AAGACCATGTCTGGGACATGGCATCGGCTTGATG-GATGAGTCAGTGT
*
82382067 AAGACCATGTCTGGGACATGGCATCGGCTTCGATTTCGAT-AGTCAGTGT
1 AAGACCATGTCTGGGACATGGCATCGGCTT-GA--TGGATGAGTCAGTGT
* ** *
82382116 AAGACCATGTCTAGGACATGGCATCAACTTGATGGATGAGCCAGTGT
1 AAGACCATGTCTGGGACATGGCATCGGCTTGATGGATGAGTCAGTGT
*
82382163 AAGACCATGTCTGGAACATGGCATCGG
1 AAGACCATGTCTGGGACATGGCATCGG
82382190 TATTACACCC
Statistics
Matches: 176, Mismatches: 22, Indels: 31
0.77 0.10 0.14
Matches are distributed among these distances:
43 3 0.02
44 10 0.06
45 17 0.10
46 55 0.31
47 45 0.26
48 6 0.03
49 36 0.20
50 3 0.02
51 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (47 bp):
AAGACCATGTCTGGGACATGGCATCGGCTTGATGGATGAGTCAGTGT
Found at i:82385542 original size:14 final size:14
Alignment explanation
Indices: 82385523--82385551 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
82385513 ATTTTTTGAG
82385523 AAAATTTATATTAA
1 AAAATTTATATTAA
82385537 AAAATTTATATTAA
1 AAAATTTATATTAA
82385551 A
1 A
82385552 CTCAAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAAATTTATATTAA
Found at i:82392814 original size:12 final size:12
Alignment explanation
Indices: 82392797--82392826 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
82392787 TCAGTGAGTT
82392797 ACACGGCCTAGC
1 ACACGGCCTAGC
*
82392809 ACACGGCCTGGC
1 ACACGGCCTAGC
82392821 ACACGG
1 ACACGG
82392827 GCGTATAGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.40, G:0.30, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:82400025 original size:18 final size:18
Alignment explanation
Indices: 82400002--82400036 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
82399992 CCACATACAT
82400002 ATGTGGTTATCGTGGTAG
1 ATGTGGTTATCGTGGTAG
82400020 ATGTGGTTATCGTGGTA
1 ATGTGGTTATCGTGGTA
82400037 AAGGAGGTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.06, G:0.37, T:0.40
Consensus pattern (18 bp):
ATGTGGTTATCGTGGTAG
Found at i:82408837 original size:12 final size:13
Alignment explanation
Indices: 82408820--82408852 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
82408810 CTTACCTAAT
*
82408820 TAAAATTTT-ATA
1 TAAAATTTTCACA
82408832 TAAAATTTTCACA
1 TAAAATTTTCACA
82408845 TAAAATTT
1 TAAAATTT
82408853 ATTTTCCACC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (13 bp):
TAAAATTTTCACA
Done.