Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 254 of 333
Found at i:83646806 original size:12 final size:12
Alignment explanation
Indices: 83646789--83646819 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
83646779 TTAAACCGAG
83646789 AAAAATTACAAA
1 AAAAATTACAAA
*
83646801 AAAAATTAGAAA
1 AAAAATTACAAA
83646813 AAAAATT
1 AAAAATT
83646820 GATGGGGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.19
Consensus pattern (12 bp):
AAAAATTACAAA
Found at i:83647809 original size:17 final size:18
Alignment explanation
Indices: 83647768--83647809 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
83647758 AGTTACATTA
83647768 TATATATATATGTTAACT
1 TATATATATATGTTAACT
*
83647786 TATTATATATAT-TTAAGT
1 TA-TATATATATGTTAACT
83647804 TATATA
1 TATATA
83647810 ATAAATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 4 0.18
18 9 0.41
19 9 0.41
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.52
Consensus pattern (18 bp):
TATATATATATGTTAACT
Found at i:83651976 original size:830 final size:827
Alignment explanation
Indices: 83650376--83652034 Score: 3149
Period size: 830 Copynumber: 2.0 Consensus size: 827
83650366 AAAGAAGATA
* *
83650376 TTTATTTATGACAAAATTCATAGAAACAAAATTAAATAAATCAGGGTATTACATGAAAAATAAAA
1 TTTAGTTATGACAAAATTCATAGAAACAAAATTAAATAAATCAGGGTATTACATGAAAAACAAAA
83650441 ATTAGACTTGGTTTAGGGACTATATTGGAATTTAAGAAAACATTGAGTAAAAATTGAAATATTCA
66 ATTAGACTTGGTTTAGGGACTATATTGGAATTTAAGAAAACATTGAGTAAAAATTGAAATATTCA
*
83650506 ATGAGAAATTGAATTGTGTTGTATTGATGTATTTTAATTGTTTTAATTTCGTATTTAACGTCATA
131 ATGAGAAATTGAATTGTGTTGTATTGATGTATTTTAATTGTTTTAATTCCGTATTTAACGTCATA
*
83650571 CCGAAATTTTCAACTAAAAAGAGGAATGATAAAATCGACGATGAATAGCCCAGAATCCATTGTGT
196 CCGAAATTTTCAACTAAAAAGAGGAATAATAAAATCGACGATGAATAGCCCAGAATCCATTGTGT
83650636 TTATATAATCCGAACTAAGTTGTAAATTATTGCATATGGTAAGCATTGGAGGTGAGAATTAATGT
261 TTATATAATCCGAACTAAGTTGTAAATTATTGCATATGGTAAGCATTGGAGGTGAGAATTAATGT
83650701 GTTTTACAATTGAATTAAATTCATAGTTGATTGAATTGGATTAATTTGGCATATGTTATGAATGT
326 GTTTTACAATTGAATTAAATTCATAGTTGATTGAATTGGATTAATTTGGCATATGTTATGAATGT
83650766 ATTGAGTAATTGAAATTGAAATGAATATATGTTTAAATGTGATAATGTGCAAATATGAGAATTGG
391 ATTGAGTAATTGAAATTGAAATGAATATATGTTTAAATGTGATAATGTGCAAATATGAGAATTGG
83650831 ATATTGGTTGTATTTGAAAAGTGAAATCAAACCCTATTAACTGTATCGGGCTGAGTCGGATATAG
456 ATATTGGTTGTATTTGAAAAGTGAAATCAAACCCTATTAACTGTATCGGGCTGAGTCGGATATAG
*
83650896 GTGGCATGCCATAGAATAGGAAGAGTTCAAGGATTTCTTCGACTTTGAGTTGATGAGGCATTGGT
521 GTGGCATGCCATAGAATAGGAAGAGTTCAAAGATTTCTTCGACTTTGAGTTGATGAGGCATTGGT
*
83650961 GCCAATTTTCTTCGGTTTAACCGATGAGACACTGTGTGTCAATTTATATAGCACTGGGCGCAATT
586 GCCAATTTGCTTCGGTTTAACCGATGAGACACTGTGTGTCAATTTATATAGCACTGGGCGCAATT
*
83651026 ATTACTTTGGATTTATCTGATGAGGCACTAGGTGTCAAACTAGTGTGTTGGTTGGATCCGTGTAT
651 ATTACTTTGGATTTATCCGATGAGGCACTAGGTGTCAAACTAGTGTGTTGGTTGGATCCGTGTAT
83651091 CAGTCCGATATTTGATACTGAAATGGCATGGTATGTGAAAATGAAATGTGAAATATGTTGTGAAC
716 CAGTCCGATATTTGATACTGAAATGGCATGGTATGTGAAAATGAAATGTGAAATATGTTGTGAAC
83651156 AAATGAAATATATTAGTTATGTACTCATGAATTGAATATGGAATGAG
781 AAATGAAATATATTAGTTATGTACTCATGAATTGAATATGGAATGAG
83651203 TTTAGTTATGACAAAATTCATAGAAACAAAATTAAATAAATCAGGGTATTACATGAAAAACAAAA
1 TTTAGTTATGACAAAATTCATAGAAACAAAATTAAATAAATCAGGGTATTACATGAAAAACAAAA
* *
83651268 ATTAGTCTTGGTTTAGGGACTATATTGGAATTTAAGCAAACATTGAGTAAAAATTGAAATATTCA
66 ATTAGACTTGGTTTAGGGACTATATTGGAATTTAAGAAAACATTGAGTAAAAATTGAAATATTCA
83651333 ATGAGAAATTGAATTGTGTTGTATTGATGTATTTTAATTGTTTTAATTCCGTATTTAACGTCATA
131 ATGAGAAATTGAATTGTGTTGTATTGATGTATTTTAATTGTTTTAATTCCGTATTTAACGTCATA
*
83651398 CCGAAATTTTCAACTAAAAAG-GGAATAATAAAATCGATGATGAATAGCCCAGAATCCACAGTTT
196 CCGAAATTTTCAACTAAAAAGAGGAATAATAAAATCGACGATGAATAGCCCAGAAT-C-CA--TT
*
83651462 GTGTTTATATAATTCGAACTAAGTTGTAAATTATTGCATATGGTAAGCATTGGAGGTGAGAATTA
257 GTGTTTATATAATCCGAACTAAGTTGTAAATTATTGCATATGGTAAGCATTGGAGGTGAGAATTA
83651527 ATGTGTTTTACAATTGAATTAAATTCATAGTTGATTGAATTGGATTAATTTGGCATATGTTATGA
322 ATGTGTTTTACAATTGAATTAAATTCATAGTTGATTGAATTGGATTAATTTGGCATATGTTATGA
83651592 ATGTATTGAGTAATTGAAATTGAAATGAATATATGTTTAAATGTGATAATGTGCAAATATGAGAA
387 ATGTATTGAGTAATTGAAATTGAAATGAATATATGTTTAAATGTGATAATGTGCAAATATGAGAA
83651657 TTGGATATTGGTTGTATTTGAAAAGTGAAATCAAACCCTATTAACTGTATCGGGCTGAGTCGGAT
452 TTGGATATTGGTTGTATTTGAAAAGTGAAATCAAACCCTATTAACTGTATCGGGCTGAGTCGGAT
83651722 ATAGGTGGCATGCCATAGAATAGGAAGAGTTCAAAGATTTCTTCGACTTTGAGTTGATGAGGCAT
517 ATAGGTGGCATGCCATAGAATAGGAAGAGTTCAAAGATTTCTTCGACTTTGAGTTGATGAGGCAT
* *
83651787 TGGTGCCAATTTGCTTTGGTTTAACCGATGAGACATTGTGTGTCAATTTATATAGCACTGGGCGC
582 TGGTGCCAATTTGCTTCGGTTTAACCGATGAGACACTGTGTGTCAATTTATATAGCACTGGGCGC
*
83651852 AATTATTATTTTGGATTTATCCGATGAGGCACTAGGTGTCAAACTAGTGTGTTGGTTGGATCCGT
647 AATTATTACTTTGGATTTATCCGATGAGGCACTAGGTGTCAAACTAGTGTGTTGGTTGGATCCGT
83651917 GTATCAGTCCGATATTTGATACTGAAATGGCATGGTATGTGAAAATGAAATGTGAAATATGTTGT
712 GTATCAGTCCGATATTTGATACTGAAATGGCATGGTATGTGAAAATGAAATGTGAAATATGTTGT
83651982 GAACAAATGAAATATATTAGTTATGTACTCATGAATTGAATATGGAATGAG
777 GAACAAATGAAATATATTAGTTATGTACTCATGAATTGAATATGGAATGAG
83652033 TT
1 TT
83652035 GTGCCATTGT
Statistics
Matches: 814, Mismatches: 14, Indels: 5
0.98 0.02 0.01
Matches are distributed among these distances:
826 32 0.04
827 212 0.26
828 2 0.00
830 568 0.70
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (827 bp):
TTTAGTTATGACAAAATTCATAGAAACAAAATTAAATAAATCAGGGTATTACATGAAAAACAAAA
ATTAGACTTGGTTTAGGGACTATATTGGAATTTAAGAAAACATTGAGTAAAAATTGAAATATTCA
ATGAGAAATTGAATTGTGTTGTATTGATGTATTTTAATTGTTTTAATTCCGTATTTAACGTCATA
CCGAAATTTTCAACTAAAAAGAGGAATAATAAAATCGACGATGAATAGCCCAGAATCCATTGTGT
TTATATAATCCGAACTAAGTTGTAAATTATTGCATATGGTAAGCATTGGAGGTGAGAATTAATGT
GTTTTACAATTGAATTAAATTCATAGTTGATTGAATTGGATTAATTTGGCATATGTTATGAATGT
ATTGAGTAATTGAAATTGAAATGAATATATGTTTAAATGTGATAATGTGCAAATATGAGAATTGG
ATATTGGTTGTATTTGAAAAGTGAAATCAAACCCTATTAACTGTATCGGGCTGAGTCGGATATAG
GTGGCATGCCATAGAATAGGAAGAGTTCAAAGATTTCTTCGACTTTGAGTTGATGAGGCATTGGT
GCCAATTTGCTTCGGTTTAACCGATGAGACACTGTGTGTCAATTTATATAGCACTGGGCGCAATT
ATTACTTTGGATTTATCCGATGAGGCACTAGGTGTCAAACTAGTGTGTTGGTTGGATCCGTGTAT
CAGTCCGATATTTGATACTGAAATGGCATGGTATGTGAAAATGAAATGTGAAATATGTTGTGAAC
AAATGAAATATATTAGTTATGTACTCATGAATTGAATATGGAATGAG
Found at i:83653929 original size:17 final size:17
Alignment explanation
Indices: 83653907--83653940 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
83653897 ATTAACATAC
83653907 TGCAAGACAATCAGATT
1 TGCAAGACAATCAGATT
83653924 TGCAAGACAATCAGATT
1 TGCAAGACAATCAGATT
83653941 AAACATAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.24
Consensus pattern (17 bp):
TGCAAGACAATCAGATT
Found at i:83663985 original size:27 final size:27
Alignment explanation
Indices: 83663955--83664011 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
83663945 TATACAATAA
83663955 GGAGTTTTCAATCATGGTACTTATTGT
1 GGAGTTTTCAATCATGGTACTTATTGT
83663982 GGAGTTTTCAATCATGGTACTTATTGT
1 GGAGTTTTCAATCATGGTACTTATTGT
83664009 GGA
1 GGA
83664012 CTGACTCCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.23, C:0.11, G:0.25, T:0.42
Consensus pattern (27 bp):
GGAGTTTTCAATCATGGTACTTATTGT
Found at i:83664935 original size:24 final size:24
Alignment explanation
Indices: 83664907--83664976 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 24
83664897 TTTTAACAAG
83664907 ATTTAATATTAAATTTAATCTAAT
1 ATTTAATATTAAATTTAATCTAAT
* * *
83664931 ATTTAATATTAGATTAAATTTAAT
1 ATTTAATATTAAATTTAATCTAAT
* *
83664955 ATTAAAATGATTAAGTTTAATC
1 ATT-TAAT-ATTAAATTTAATC
83664977 ATAGTTGAAC
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
24 24 0.67
25 3 0.08
26 9 0.25
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (24 bp):
ATTTAATATTAAATTTAATCTAAT
Found at i:83668236 original size:18 final size:18
Alignment explanation
Indices: 83668208--83668243 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
83668198 TAGAATGTTA
83668208 ATTTGGTATCGAT-TTTT
1 ATTTGGTATCGATATTTT
83668225 ATTTGAGTATCGATATTTT
1 ATTTG-GTATCGATATTTT
83668244 TTTTATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
18 8 0.47
19 4 0.24
ACGTcount: A:0.22, C:0.06, G:0.17, T:0.56
Consensus pattern (18 bp):
ATTTGGTATCGATATTTT
Found at i:83670280 original size:51 final size:51
Alignment explanation
Indices: 83670223--83670426 Score: 363
Period size: 51 Copynumber: 4.0 Consensus size: 51
83670213 CATTCACATA
83670223 ACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
1 ACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
83670274 ACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
1 ACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
* * *
83670325 ACAAAGTGACCTTCACATAGTACCACACTTGTGTCCAAAACTATTTTATTC
1 ACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
* *
83670376 ACAAAGTGGCCTTCACATAGTACCACGCTTGTGTCCAAAGCTATTTTATTC
1 ACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
83670427 CTAAGATTCA
Statistics
Matches: 147, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 147 1.00
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.30
Consensus pattern (51 bp):
ACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
Found at i:83672348 original size:26 final size:26
Alignment explanation
Indices: 83672319--83672426 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
83672309 TGATACAAAT
83672319 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
83672345 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
83672371 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
83672397 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
83672423 TGAT
1 TGAT
83672427 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:83682844 original size:22 final size:22
Alignment explanation
Indices: 83682819--83682863 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
83682809 TAAGATAAAA
*
83682819 TATTTAATTTTAAAAGATATTT
1 TATTTAATTCTAAAAGATATTT
* *
83682841 TATTTAATTCTAATATATATTT
1 TATTTAATTCTAAAAGATATTT
83682863 T
1 T
83682864 TAAAACTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (22 bp):
TATTTAATTCTAAAAGATATTT
Found at i:83682959 original size:18 final size:17
Alignment explanation
Indices: 83682927--83682961 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
83682917 TTCATATTAA
*
83682927 ATTTTTTATTTTAAAAT
1 ATTTTTTATTATAAAAT
83682944 ATTTTTTATATATAAAAT
1 ATTTTTTAT-TATAAAAT
83682962 TATAATAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTTTATTATAAAAT
Found at i:83683310 original size:17 final size:17
Alignment explanation
Indices: 83683288--83683321 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
83683278 ACTTTTAATT
83683288 TATATTATTCAAAATAA
1 TATATTATTCAAAATAA
83683305 TATATTATTCAAAATAA
1 TATATTATTCAAAATAA
83683322 AACACACATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (17 bp):
TATATTATTCAAAATAA
Found at i:83689472 original size:46 final size:46
Alignment explanation
Indices: 83689414--83689506 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
83689404 CTGCAATAAC
83689414 ATACATACAACGAGTCTATAGTCCATACAAGTATAGAAAACTATGG
1 ATACATACAACGAGTCTATAGTCCATACAAGTATAGAAAACTATGG
83689460 ATACATACAACGAGTCTATAGTCCATACAAGTATAGAAAACTATGG
1 ATACATACAACGAGTCTATAGTCCATACAAGTATAGAAAACTATGG
83689506 A
1 A
83689507 AGAAACACTG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.24
Consensus pattern (46 bp):
ATACATACAACGAGTCTATAGTCCATACAAGTATAGAAAACTATGG
Found at i:83693285 original size:24 final size:24
Alignment explanation
Indices: 83693228--83693300 Score: 83
Period size: 24 Copynumber: 3.0 Consensus size: 24
83693218 GGCTACTCAT
* * *
83693228 CTGGAAGAAACAGTTATGTGAGCA
1 CTGGAAGAAGCAGTCATGTCAGCA
*
83693252 CTGGAAGAAGCAGTCATGTCAGCG
1 CTGGAAGAAGCAGTCATGTCAGCA
* * *
83693276 CTGGAAGAAGTAGCCATGGCAGCA
1 CTGGAAGAAGCAGTCATGTCAGCA
83693300 C
1 C
83693301 AATTACCCTT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.33, C:0.19, G:0.32, T:0.16
Consensus pattern (24 bp):
CTGGAAGAAGCAGTCATGTCAGCA
Found at i:83702699 original size:43 final size:43
Alignment explanation
Indices: 83702652--83702764 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 43
83702642 TATAACAGCA
*
83702652 TTAGCTGAGTAAATGGCACTAAGTGTGAGATACAATTATAGCT
1 TTAGCTAAGTAAATGGCACTAAGTGTGAGATACAATTATAGCT
* ** * *
83702695 TTAGCTAATTATTTGGCACTAAGTGTGCGATACAATTCTAGC-
1 TTAGCTAAGTAAATGGCACTAAGTGTGAGATACAATTATAGCT
* * * *
83702737 TTCGACTAATTAATTAGCACTAAGTGTG
1 TTAG-CTAAGTAAATGGCACTAAGTGTG
83702765 TGAGTTCGTT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
42 3 0.05
43 57 0.95
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (43 bp):
TTAGCTAAGTAAATGGCACTAAGTGTGAGATACAATTATAGCT
Found at i:83703821 original size:139 final size:139
Alignment explanation
Indices: 83703571--83703850 Score: 479
Period size: 139 Copynumber: 2.0 Consensus size: 139
83703561 ATGTTTATAG
* * *
83703571 ATTTTTTGGAGATCTGCTCTGGTTAGAAGTCGATGGAGACGTCATCACACTATTCAGCTATTATT
1 ATTTTTTGGAGATCTGCTCTAGTTAGAAGTCGATGGAGACGTCATCACACTATCCAGCTATCATT
* *
83703636 TCGGTAATTAATGTTTTGGGATTTGGTTATGTGGCATGTATAGGCTAGAAGTATATGAATATGTT
66 TCGGTAATTAATATTTTGGGATTTGGTTATATGGCATGTATAGGCTAGAAGTATATGAATATGTT
83703701 TGGTGATGT
131 TGGTGATGT
* * * *
83703710 ATTTTTTGGAGATCTGCTCTAGTTGGAAGTTGATGGAGATGTCATCACACTATCCAGTTATCATT
1 ATTTTTTGGAGATCTGCTCTAGTTAGAAGTCGATGGAGACGTCATCACACTATCCAGCTATCATT
83703775 TCGGTAATTAATATTTTGGGATTTGGTTATATGGCATGTATAGGCTAGAAGTATATGAATATGTT
66 TCGGTAATTAATATTTTGGGATTTGGTTATATGGCATGTATAGGCTAGAAGTATATGAATATGTT
83703840 TGGTGATGT
131 TGGTGATGT
83703849 AT
1 AT
83703851 ATATCTAGCC
Statistics
Matches: 132, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
139 132 1.00
ACGTcount: A:0.25, C:0.10, G:0.25, T:0.40
Consensus pattern (139 bp):
ATTTTTTGGAGATCTGCTCTAGTTAGAAGTCGATGGAGACGTCATCACACTATCCAGCTATCATT
TCGGTAATTAATATTTTGGGATTTGGTTATATGGCATGTATAGGCTAGAAGTATATGAATATGTT
TGGTGATGT
Found at i:83705687 original size:23 final size:23
Alignment explanation
Indices: 83705658--83705741 Score: 141
Period size: 23 Copynumber: 3.7 Consensus size: 23
83705648 GAAATTAATT
* *
83705658 CCACACGGGTGTGTGCCCTATAC
1 CCACACGGGCGTGTGCCCTATTC
*
83705681 ACACACGGGCGTGTGCCCTATTC
1 CCACACGGGCGTGTGCCCTATTC
83705704 CCACACGGGCGTGTGCCCTATTC
1 CCACACGGGCGTGTGCCCTATTC
83705727 CCACACGGGCGTGTG
1 CCACACGGGCGTGTG
83705742 GAGTCTTAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 57 1.00
ACGTcount: A:0.15, C:0.36, G:0.29, T:0.20
Consensus pattern (23 bp):
CCACACGGGCGTGTGCCCTATTC
Found at i:83714737 original size:17 final size:17
Alignment explanation
Indices: 83714711--83714744 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
83714701 TAATTTACCC
*
83714711 TTCAATTTACATGCTTT
1 TTCAACTTACATGCTTT
83714728 TTCAACTTACATGCTTT
1 TTCAACTTACATGCTTT
83714745 AATCATCCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.21, G:0.06, T:0.50
Consensus pattern (17 bp):
TTCAACTTACATGCTTT
Found at i:83717629 original size:31 final size:31
Alignment explanation
Indices: 83717581--83717656 Score: 116
Period size: 31 Copynumber: 2.5 Consensus size: 31
83717571 TGCCCCAAGA
*
83717581 TACATGGGCGTGTGAGTCCACACGGCCCACG
1 TACATGGGCGTGTGAGTCCACACGGCCCACC
* * *
83717612 TACACGGGCATGTGAGTCCACACGGCCTACC
1 TACATGGGCGTGTGAGTCCACACGGCCCACC
83717643 TACATGGGCGTGTG
1 TACATGGGCGTGTG
83717657 TCCCTTTATG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.18
Consensus pattern (31 bp):
TACATGGGCGTGTGAGTCCACACGGCCCACC
Found at i:83733121 original size:25 final size:25
Alignment explanation
Indices: 83733087--83733155 Score: 102
Period size: 25 Copynumber: 2.8 Consensus size: 25
83733077 GGAAGTGCTA
*
83733087 AAAGGGCTCTGCCCCAGTTTACCAT
1 AAAGGGCTCTGCCCCAGTTTACCAG
* *
83733112 AAAGGACTCTGCCCCAGTTTATCAG
1 AAAGGGCTCTGCCCCAGTTTACCAG
*
83733137 AAAGGGCTTTGCCCCAGTT
1 AAAGGGCTCTGCCCCAGTT
83733156 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (25 bp):
AAAGGGCTCTGCCCCAGTTTACCAG
Found at i:83733168 original size:24 final size:24
Alignment explanation
Indices: 83733087--83733182 Score: 77
Period size: 25 Copynumber: 3.9 Consensus size: 24
83733077 GGAAGTGCTA
* * *
83733087 AAAGGGCTCTGCCCCAGTTTACCAT
1 AAAGGGCTATGCCCCAG-TTATCAG
* *
83733112 AAAGGACTCTGCCCCAGTTTATCAG
1 AAAGGGCTATGCCCCAG-TTATCAG
* *
83733137 AAAGGGCTTTGCCCCAGTTATTA-
1 AAAGGGCTATGCCCCAGTTATCAG
*
83733160 AAAGAGGCTAGGCCTCCAGTTAT
1 AAAG-GGCTATGCC-CCAGTTAT
83733183 ATGATAAAGC
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
23 4 0.07
24 12 0.20
25 45 0.74
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (24 bp):
AAAGGGCTATGCCCCAGTTATCAG
Found at i:83733474 original size:29 final size:28
Alignment explanation
Indices: 83733440--83733494 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
83733430 AGACTGAATT
* *
83733440 AGGGCTTAGGCCCATACTGCTACTGTTTA
1 AGGGCTAAGGCCCAGACTG-TACTGTTTA
83733469 AGGGCTAAGGCCCAGACTGTACTGTT
1 AGGGCTAAGGCCCAGACTGTACTGTT
83733495 ACTGAATAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (28 bp):
AGGGCTAAGGCCCAGACTGTACTGTTTA
Found at i:83733514 original size:33 final size:33
Alignment explanation
Indices: 83733432--83733522 Score: 93
Period size: 33 Copynumber: 2.8 Consensus size: 33
83733422 ATATGTCGAG
*
83733432 ACTGAATTAGGGCTTAGGCCCATACTGCTACTGTT
1 ACTGAA-TAGGGCTTAGGCCCAGACTG-TACTGTT
*
83733467 --T--A-AGGGCTAAGGCCCAGACTGTACTGTT
1 ACTGAATAGGGCTTAGGCCCAGACTGTACTGTT
* *
83733495 ACTGAATAGGGCTTTGGCCCAGATTGTA
1 ACTGAATAGGGCTTAGGCCCAGACTGTA
83733523 TTGACACTGT
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
28 7 0.15
29 17 0.37
30 1 0.02
31 1 0.02
32 1 0.02
33 19 0.41
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (33 bp):
ACTGAATAGGGCTTAGGCCCAGACTGTACTGTT
Found at i:83735628 original size:27 final size:27
Alignment explanation
Indices: 83735598--83735742 Score: 177
Period size: 27 Copynumber: 5.4 Consensus size: 27
83735588 ATTACCAAAG
* * *
83735598 TACCCCCGACTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
83735625 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
83735652 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
83735679 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
83735706 TACCCTCGATTGT-GA-AATTACCGTTT
1 TACCCTCGATT-TACAGAATTACCGTTT
*
83735732 TACCTTCGATT
1 TACCCTCGATT
83735743 GTGAAATTAC
Statistics
Matches: 107, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
26 20 0.19
27 86 0.80
28 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.11, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:83735645 original size:54 final size:53
Alignment explanation
Indices: 83735571--83735700 Score: 127
Period size: 54 Copynumber: 2.4 Consensus size: 53
83735561 ATTATTGAAA
*
83735571 TACCCTCGACTTGTAA-AATTACCAAAGTACCCCCGACTTACATAATTACCGTTT
1 TACCCTCGA-TT-TAAGAATTACCAAAGTACCCCCGACTTACAGAATTACCGTTT
**** * * * *
83735625 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTA-AGAATTACCAAAGTACCCCCGACTTACAGAATTACCGTTT
*
83735679 TACCCTTGATTTATAGAATTAC
1 TACCCTCGATTTA-AGAATTAC
83735701 TGTTTTACCC
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
52 2 0.03
53 3 0.05
54 58 0.92
ACGTcount: A:0.29, C:0.25, G:0.10, T:0.36
Consensus pattern (53 bp):
TACCCTCGATTTAAGAATTACCAAAGTACCCCCGACTTACAGAATTACCGTTT
Found at i:83735761 original size:26 final size:26
Alignment explanation
Indices: 83735706--83735859 Score: 94
Period size: 27 Copynumber: 5.8 Consensus size: 26
83735696 ATTACTGTTT
***
83735706 TACCCTCGATTGTGAAATTACCGTTT
1 TACCCTCGATTGTGAAATTACCGAAA
* *
83735732 TACCTTCGATTGTGAAATTACTGAAA
1 TACCCTCGATTGTGAAATTACCGAAA
* * * *
83735758 TACCC-CTATAGGGTAGAATTACCAAAA
1 TACCCTCGATTGTG-A-AATTACCGAAA
* * * *
83735785 TACCCCTAGTTTGTAAAATTACCAAAA
1 TA-CCCTCGATTGTGAAATTACCGAAA
* *
83735812 TACCACTGGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTGTGAAATTACCGAAA
* * *
83735839 TATCCTCAATTCGTAAAATTA
1 TACCCTCGATT-GTGAAATTA
83735860 TTAAAATACC
Statistics
Matches: 97, Mismatches: 25, Indels: 11
0.73 0.19 0.08
Matches are distributed among these distances:
25 5 0.05
26 32 0.33
27 54 0.56
28 4 0.04
29 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.32
Consensus pattern (26 bp):
TACCCTCGATTGTGAAATTACCGAAA
Found at i:83735804 original size:27 final size:27
Alignment explanation
Indices: 83735774--83735911 Score: 109
Period size: 27 Copynumber: 5.1 Consensus size: 27
83735764 TATAGGGTAG
*
83735774 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
* ** *
83735801 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
* * *
83735828 AATTACCGAAATA-TCCTCAATTCGTAA
1 AATTACCAAAATACCCCT-AATTTGTAA
** **
83735855 AATTATTAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAATTTGTAA
* *
83735882 AATTA-CAGAAATACCCTTAACTTTCTAA
1 AATTACCA-AAATACCCCTAA-TTTGTAA
83735910 AA
1 AA
83735912 ATTATAGAAA
Statistics
Matches: 86, Mismatches: 21, Indels: 7
0.75 0.18 0.06
Matches are distributed among these distances:
26 3 0.03
27 73 0.85
28 10 0.12
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:83735960 original size:27 final size:27
Alignment explanation
Indices: 83735853--83735960 Score: 94
Period size: 27 Copynumber: 3.9 Consensus size: 27
83735843 CTCAATTCGT
* * * *
83735853 AAAATTATTAAAATACCCCTAATTTAC
1 AAAATTACTGAAATACCCTTAGTTTAC
* *
83735880 AAAATTACAGAAATACCCTTAACTTT-C
1 AAAATTACTGAAATACCCTT-AGTTTAC
*
83735907 TAAAAATTA-TAGAAATACCATTAGTTTAC
1 --AAAATTACT-GAAATACCCTTAGTTTAC
*
83735936 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCCTTAGTTT
83735961 GTAGATTTAC
Statistics
Matches: 65, Mismatches: 10, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
27 38 0.58
28 9 0.14
29 18 0.28
ACGTcount: A:0.44, C:0.17, G:0.06, T:0.33
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTAGTTTAC
Found at i:83736923 original size:25 final size:25
Alignment explanation
Indices: 83736889--83736957 Score: 102
Period size: 25 Copynumber: 2.8 Consensus size: 25
83736879 GGAAGTGCTA
*
83736889 AAAGGGCTCTGCCCCAGTTTACCAT
1 AAAGGGCTCTGCCCCAGTTTACCAG
* *
83736914 AAAGGACTCTGCCCCAGTTTATCAG
1 AAAGGGCTCTGCCCCAGTTTACCAG
*
83736939 AAAGGGCTTTGCCCCAGTT
1 AAAGGGCTCTGCCCCAGTT
83736958 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (25 bp):
AAAGGGCTCTGCCCCAGTTTACCAG
Found at i:83736970 original size:24 final size:24
Alignment explanation
Indices: 83736889--83736984 Score: 77
Period size: 25 Copynumber: 3.9 Consensus size: 24
83736879 GGAAGTGCTA
* * *
83736889 AAAGGGCTCTGCCCCAGTTTACCAT
1 AAAGGGCTATGCCCCAG-TTATCAG
* *
83736914 AAAGGACTCTGCCCCAGTTTATCAG
1 AAAGGGCTATGCCCCAG-TTATCAG
* *
83736939 AAAGGGCTTTGCCCCAGTTATTA-
1 AAAGGGCTATGCCCCAGTTATCAG
*
83736962 AAAGAGGCTAGGCCTCCAGTTAT
1 AAAG-GGCTATGCC-CCAGTTAT
83736985 ATGATAAAGC
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
23 4 0.07
24 12 0.20
25 45 0.74
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (24 bp):
AAAGGGCTATGCCCCAGTTATCAG
Found at i:83737234 original size:31 final size:31
Alignment explanation
Indices: 83737184--83737258 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 31
83737174 AGTAAAGGAT
*
83737184 TCGA-CCAGTGATATGATTTATGAAAAGGCC
1 TCGACCCAGTGATATAATTTATGAAAAGGCC
* *
83737214 TCGACCCAGTGGTATAATTTATGAAAAGGCT
1 TCGACCCAGTGATATAATTTATGAAAAGGCC
*
83737245 TCGGCCCAGT-ATAT
1 TCGACCCAGTGATAT
83737259 GTCGAGACTG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 7 0.18
31 32 0.82
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28
Consensus pattern (31 bp):
TCGACCCAGTGATATAATTTATGAAAAGGCC
Found at i:83737307 original size:29 final size:28
Alignment explanation
Indices: 83737273--83737327 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
83737263 AGACTGAATT
* * *
83737273 AGGGCTTAGGCCCATACTGCTACTGTTTA
1 AGGGCTAAGACCCAGACTG-TACTGTTTA
83737302 AGGGCTAAGACCCAGACTGTACTGTT
1 AGGGCTAAGACCCAGACTGTACTGTT
83737328 ACTGAATAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 7 0.30
29 16 0.70
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (28 bp):
AGGGCTAAGACCCAGACTGTACTGTTTA
Found at i:83739448 original size:27 final size:27
Alignment explanation
Indices: 83739418--83739478 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
83739408 CGACTTGTAA
*
83739418 AATTACCAAAGTACCCCCGATTTACAT
1 AATTACCAAAGTACCCCCGATTTACAG
**** *
83739445 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCCCGATTTACAG
83739472 AATTACC
1 AATTACC
83739479 GTTTTACCCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.28, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCAAAGTACCCCCGATTTACAG
Found at i:83739476 original size:54 final size:54
Alignment explanation
Indices: 83739402--83739531 Score: 138
Period size: 54 Copynumber: 2.4 Consensus size: 54
83739392 ATTATTGAAA
*
83739402 TACCCTCGACTTGTA-A-AATTACCAAAGTACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGA-TT-TACAGAATTACCAAAGTACCCCCGATTTACAGAATTACCGTTT
**** * * *
83739456 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCAAAGTACCCCCGATTTACAGAATTACCGTTT
* *
83739510 TACCCTTGATTAACAGAATTAC
1 TACCCTCGATTTACAGAATTAC
83739532 TATTTTACCG
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
52 2 0.03
53 3 0.05
54 59 0.92
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCAAAGTACCCCCGATTTACAGAATTACCGTTT
Found at i:83739479 original size:27 final size:27
Alignment explanation
Indices: 83739429--83739573 Score: 177
Period size: 27 Copynumber: 5.4 Consensus size: 27
83739419 ATTACCAAAG
* *
83739429 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
83739456 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
83739483 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
83739510 TACCCTTGATTAACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
83739537 TACCGTCGATTGT-GA-AATTACCGTTT
1 TACCCTCGATT-TACAGAATTACCGTTT
83739563 TACCCTCGATT
1 TACCCTCGATT
83739574 GTGAAATTAC
Statistics
Matches: 102, Mismatches: 15, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
26 19 0.19
27 83 0.81
ACGTcount: A:0.26, C:0.23, G:0.11, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:83739592 original size:26 final size:26
Alignment explanation
Indices: 83739537--83739707 Score: 101
Period size: 27 Copynumber: 6.4 Consensus size: 26
83739527 ATTACTATTT
* ****
83739537 TACCGTCGATTGTGAAATTACCGTTT
1 TACCCTCGATTGTGAAATTACCAAAA
**
83739563 TACCCTCGATTGTGAAATTACTGAAA
1 TACCCTCGATTGTGAAATTACCAAAA
* * * *
83739589 TACCC-CTATAGGGTAGAATTACAAAAA
1 TACCCTCGATTGTG-A-AATTACCAAAA
* * *
83739616 TACCCCTAGTTTGTAAAATTACCAAAA
1 TA-CCCTCGATTGTGAAATTACCAAAA
* * *
83739643 TACCACTGGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTGTGAAATTACCAAAA
* * *
83739670 TATCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGA-TTGTGAAATTACCAAAA
*
83739697 TACCCTTGATT
1 TACCCTCGATT
83739708 TACAAAATTA
Statistics
Matches: 110, Mismatches: 29, Indels: 12
0.73 0.19 0.08
Matches are distributed among these distances:
25 5 0.05
26 33 0.30
27 66 0.60
28 4 0.04
29 2 0.02
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.32
Consensus pattern (26 bp):
TACCCTCGATTGTGAAATTACCAAAA
Found at i:83739708 original size:27 final size:27
Alignment explanation
Indices: 83739605--83739806 Score: 124
Period size: 27 Copynumber: 7.4 Consensus size: 27
83739595 TATAGGGTAG
* *
83739605 AATTACAAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
* *
83739632 AATTACCAAAATACCAC-TGGTTTGTGA
1 AATTACCAAAATACC-CTTGATTTGTAA
* * **
83739659 AATTACCGAAATATCCTCAATTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
**
83739686 AATTACCAAAATACCCTTGATTTACAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
83739713 AATTA-TAGAAATACCCTTGACTTTCTAAA
1 AATTACCA-AAATACCCTTGA-TTTGT-AA
* * * **
83739742 AATTA-TAGAAATACCATTGGTTTACAA
1 AATTACCA-AAATACCCTTGATTTGTAA
** * *
83739769 AATTACGGAAATACCCTTGGTTTGTAT
1 AATTACCAAAATACCCTTGATTTGTAA
*
83739796 ATTTACCAAAA
1 AATTACCAAAA
83739807 CACCATTGTA
Statistics
Matches: 137, Mismatches: 31, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
26 2 0.01
27 108 0.79
28 7 0.05
29 20 0.15
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:83739716 original size:54 final size:55
Alignment explanation
Indices: 83739605--83739786 Score: 165
Period size: 54 Copynumber: 3.3 Consensus size: 55
83739595 TATAGGGTAG
* * * ***
83739605 AATTACAAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCAC-TGGTTTGTGA
1 AATTACAGAAATACCCTTCAATTTGTAAAATTACCAAAATACC-CTTGGTTTACAA
* * *
83739659 AATTACCGAAATATCC-TCAATTTGTAAAATTACCAAAATACCCTTGATTTACAA
1 AATTACAGAAATACCCTTCAATTTGTAAAATTACCAAAATACCCTTGGTTTACAA
* * * * * *
83739713 AATTATAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAA
1 AATTACAGAAATACCCTTCAATTTGT-AAAATTACCA-AAATACCCTTGGTTTACAA
*
83739769 AATTACGGAAATACCCTT
1 AATTACAGAAATACCCTT
83739787 GGTTTGTATA
Statistics
Matches: 104, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
53 2 0.02
54 55 0.53
55 7 0.07
56 40 0.38
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (55 bp):
AATTACAGAAATACCCTTCAATTTGTAAAATTACCAAAATACCCTTGGTTTACAA
Found at i:83739883 original size:27 final size:27
Alignment explanation
Indices: 83739845--83739909 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
83739835 ACCCCTAATA
*
83739845 GGTAAAAAGACCATAA-AGCCACTGTAG
1 GGTAAAATGACCATAATA-CCACTGTAG
* * * *
83739872 GGTAAAGTGACCGTAATACCCCTGTAT
1 GGTAAAATGACCATAATACCACTGTAG
83739899 GGTAAAATGAC
1 GGTAAAATGAC
83739910 GAATATGCCC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCATAATACCACTGTAG
Found at i:83740755 original size:25 final size:25
Alignment explanation
Indices: 83740727--83740786 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
83740717 GCTAAAATGA
*
83740727 CTCTGCCCCAGTTTACCGAAAAGGG
1 CTCTGCCCCAGTTTACCAAAAAGGG
* *
83740752 CTCTACCCCAGTTTATCAAAAAGGG
1 CTCTGCCCCAGTTTACCAAAAAGGG
*
83740777 CTTTGCCCCA
1 CTCTGCCCCA
83740787 ATTATTAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.23
Consensus pattern (25 bp):
CTCTGCCCCAGTTTACCAAAAAGGG
Found at i:83740791 original size:24 final size:25
Alignment explanation
Indices: 83740727--83740796 Score: 61
Period size: 25 Copynumber: 2.8 Consensus size: 25
83740717 GCTAAAATGA
* * * *
83740727 CTCTGCCCCAGTTTACCGAAAAGGG
1 CTCTACCCCAGATTATCAAAAAGGG
*
83740752 CTCTACCCCAGTTTATCAAAAAGGG
1 CTCTACCCCAGATTATCAAAAAGGG
* * *
83740777 CTTTGCCCCA-ATTATTAAAA
1 CTCTACCCCAGATTATCAAAA
83740797 GAGGCTAGGC
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
24 8 0.21
25 30 0.79
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.26
Consensus pattern (25 bp):
CTCTACCCCAGATTATCAAAAAGGG
Found at i:83741060 original size:31 final size:31
Alignment explanation
Indices: 83741009--83741091 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
83740999 CGCTTACAGT
*
83741009 AAAGGCTTCGG-CTAGTGATATGATTCATGA
1 AAAGGCTTCGGCCCAGTGATATGATTCATGA
*
83741039 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTCATGA
83741070 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
83741092 TCGAGACTGA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
30 16 0.32
31 34 0.68
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTCATGA
Found at i:83749003 original size:23 final size:22
Alignment explanation
Indices: 83748971--83749017 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
83748961 ACCGGGCCAT
83748971 AAAAAAATTCATTCAAATTAAA
1 AAAAAAATTCATTCAAATTAAA
* *
83748993 AAAAAACATTCATTCATATTCAA
1 AAAAAA-ATTCATTCAAATTAAA
83749016 AA
1 AA
83749018 TGTCCCTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.60, C:0.13, G:0.00, T:0.28
Consensus pattern (22 bp):
AAAAAAATTCATTCAAATTAAA
Found at i:83750975 original size:48 final size:48
Alignment explanation
Indices: 83750869--83751226 Score: 360
Period size: 48 Copynumber: 7.4 Consensus size: 48
83750859 CATGTCCCGG
* * * * *
83750869 ACATGGTCTTACACTGGCTCTCATACATCGATGTCGATGCCATGTCCCAG
1 ACATGGTCTTACACTAGCTCTCATA-A-CAATGCCGATGCCATGTTCCAA
* * * * *
83750919 ACACGGTCTTACATTGGCTCACATAACAATGCCGATGCCATGTTCTAA
1 ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
* * *** * * *
83750967 ATATGGTCTTACACTGGCT-TGCATATTGAGGCCGATGCCATG-TCTTAG
1 ACATGGTCTTACACTAGCTCT-CATAACAATGCCGATGCCATGTTC-CAA
* * *
83751015 ACATAGTCTTACACTAGCTCTCATAACAATGTCGATGTCATGTTCCAA
1 ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
* * ** *** * * * *
83751063 ATATGGTCTTACACTGGCTAGCATATTGAGGCCGATGTCATGTCCCAG
1 ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
*
83751111 ACATGGTCTTACAGTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
1 ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
*
83751159 ACATGGTTTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
1 ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
83751207 ACATGGTCTTACACTAGCTC
1 ACATGGTCTTACACTAGCTC
83751227 ACACATAACC
Statistics
Matches: 249, Mismatches: 55, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
47 2 0.01
48 221 0.89
49 4 0.02
50 22 0.09
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.29
Consensus pattern (48 bp):
ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
Found at i:83751040 original size:96 final size:96
Alignment explanation
Indices: 83750871--83751226 Score: 444
Period size: 96 Copynumber: 3.7 Consensus size: 96
83750861 TGTCCCGGAC
* * * * *
83750871 ATGGTCTTACACTGGCTCTCATACATCGATGTCGATGCCATGTCCCAGACACGGTCTTACATTGG
1 ATGGTCTTACACTGGCTCTCAT--ATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
* *
83750936 CTCACATAACAATGCCGATGCCATGTTCTAAAT
64 CTCTCATAACAATGCCGATGCCATGTTCCAAAT
* ** *
83750969 ATGGTCTTACACTGGCT-TGCATATTGAGGCCGATGCCATGTCTTAGACATAGTCTTACACTAGC
1 ATGGTCTTACACTGGCTCT-CATATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
* *
83751033 TCTCATAACAATGTCGATGTCATGTTCCAAAT
65 TCTCATAACAATGCCGATGCCATGTTCCAAAT
** * * *
83751065 ATGGTCTTACACTGGCTAGCATATTGAGGCCGATGTCATGTCCCAGACATGGTCTTACAGTAGCT
1 ATGGTCTTACACTGGCTCTCATATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
*
83751130 CTCATAACAATGCCGATGCCATGTTCCAAAC
66 CTCATAACAATGCCGATGCCATGTTCCAAAT
* * * * * * *
83751161 ATGGTTTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCT
1 ATGGTCTTACACTGGCTCTCATATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
83751226 C
66 C
83751227 ACACATAACC
Statistics
Matches: 222, Mismatches: 34, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
96 201 0.91
97 1 0.00
98 20 0.09
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (96 bp):
ATGGTCTTACACTGGCTCTCATATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
CTCATAACAATGCCGATGCCATGTTCCAAAT
Found at i:83751120 original size:144 final size:144
Alignment explanation
Indices: 83750858--83751229 Score: 399
Period size: 144 Copynumber: 2.6 Consensus size: 144
83750848 AATGCCAATA
* * * * * * *
83750858 CCATGTCCCGGACATGGTCTTACACTGGCTCTCATACATCGATGTCGATGCCATGTCCCAGACAC
1 CCATGTTCCAGACATGGTCTTACACTAGCTCTCATA-A-CAATGTCGATGCCATGTTCCAAACAT
* * * * * *
83750923 GGTCTTACATTGGCTCACATAACAATGCCGATGCCATGTTCTAAATATGGTCTTACACTGGCT-T
64 GGTCTTACACTGGCTCACATAACAAGGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCT
***
83750987 GCATATTGAGGCCGATG
129 -CATAACAAGGCCGATG
* * * *
83751004 CCATG-TCTTAGACATAGTCTTACACTAGCTCTCATAACAATGTCGATGTCATGTTCCAAATATG
1 CCATGTTC-CAGACATGGTCTTACACTAGCTCTCATAACAATGTCGATGCCATGTTCCAAACATG
*** * * *
83751068 GTCTTACACTGGCT-AGCATATTGAGGCCGATGTCATGTCCCAGACATGGTCTTACAGTAGCTCT
65 GTCTTACACTGGCTCA-CATAACAAGGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCT
*
83751132 CATAACAATGCCGATG
129 CATAACAAGGCCGATG
* * *
83751148 CCATGTTCCAAACATGGTTTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAAACATGG
1 CCATGTTCCAGACATGGTCTTACACTAGCTCTCATAACAATGTCGATGCCATGTTCCAAACATGG
*
83751213 TCTTACACTAGCTCACA
66 TCTTACACTGGCTCACA
83751230 CATAACCCTA
Statistics
Matches: 186, Mismatches: 35, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
143 1 0.01
144 150 0.81
145 6 0.03
146 29 0.16
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.29
Consensus pattern (144 bp):
CCATGTTCCAGACATGGTCTTACACTAGCTCTCATAACAATGTCGATGCCATGTTCCAAACATGG
TCTTACACTGGCTCACATAACAAGGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCA
TAACAAGGCCGATG
Found at i:83752442 original size:24 final size:24
Alignment explanation
Indices: 83752415--83752462 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
83752405 ACCAAACAAA
83752415 TATCTTCCACTAACCTATTAATAG
1 TATCTTCCACTAACCTATTAATAG
83752439 TATCTTCCACTAACCTATTAATAG
1 TATCTTCCACTAACCTATTAATAG
83752463 GTTAACTTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.04, T:0.38
Consensus pattern (24 bp):
TATCTTCCACTAACCTATTAATAG
Found at i:83754733 original size:27 final size:27
Alignment explanation
Indices: 83754703--83754880 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
83754693 ATATTGAGTC
* * * *
83754703 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
83754730 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
83754757 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
83754785 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
83754812 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
83754839 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
83754866 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
83754881 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:83754842 original size:82 final size:81
Alignment explanation
Indices: 83754724--83754879 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
83754714 TGCTATATAA
* *
83754724 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
83754789 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
83754806 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
83754870 CACTTAGTGC
65 CACTTAGTGC
83754880 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:83761288 original size:27 final size:27
Alignment explanation
Indices: 83761258--83761433 Score: 102
Period size: 27 Copynumber: 6.5 Consensus size: 27
83761248 ATTGAGTCCG
* * *
83761258 CACACTCAGTGCTATATAATCAACTAA
1 CACACTTAGTGCTACATAATCAAATAA
* **
83761285 CACACTTAGTGCTACGTAATCAAATCG
1 CACACTTAGTGCTACATAATCAAATAA
* **
83761312 CACACTTAGTGCTACATAGTCAAACTCG
1 CACACTTAGTGCTACATAATCAAA-TAA
** ** * **
83761340 CACACTTAGTGCCGCATGGTCAATTCG
1 CACACTTAGTGCTACATAATCAAATAA
* ** **
83761367 CACACTTAGTGC-ATCATATTCATTTCG
1 CACACTTAGTGCTA-CATAATCAAATAA
* * **
83761394 CACACTTAGTGCAACATAGTCAAATCG
1 CACACTTAGTGCTACATAATCAAATAA
83761421 CACACTTAGTGCT
1 CACACTTAGTGCT
83761434 GTACAATTTA
Statistics
Matches: 126, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 102 0.81
28 24 0.19
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (27 bp):
CACACTTAGTGCTACATAATCAAATAA
Found at i:83761416 original size:54 final size:55
Alignment explanation
Indices: 83761256--83761433 Score: 191
Period size: 54 Copynumber: 3.3 Consensus size: 55
83761246 ATATTGAGTC
* * * ** * * *
83761256 CGCACACTCAGTGCTATATAATC-AACTAACACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
** * *
83761310 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
* **
83761365 CGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
83761419 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
83761434 GTACAATTTA
Statistics
Matches: 103, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
54 60 0.58
55 43 0.42
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:83763711 original size:21 final size:20
Alignment explanation
Indices: 83763674--83763713 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
83763664 CCTTAGAAAC
* *
83763674 AGGGCACACGTCTGTGTGGA
1 AGGGCACACGCCCGTGTGGA
83763694 AGGGCAACACGCCCGTGTGG
1 AGGGC-ACACGCCCGTGTGG
83763714 CCATTAGGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.20, C:0.25, G:0.40, T:0.15
Consensus pattern (20 bp):
AGGGCACACGCCCGTGTGGA
Found at i:83772587 original size:20 final size:21
Alignment explanation
Indices: 83772562--83772601 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
83772552 CTCTTGAAAC
83772562 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
83772582 AGGGCAACACGTCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
83772602 TCATTATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:83775182 original size:22 final size:23
Alignment explanation
Indices: 83775134--83775182 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 23
83775124 TTCCTTCTAG
* *
83775134 GGTTCACATAGACATACATATAG
1 GGTTCACATAGACAAACATATAA
* *
83775157 GGTTCACATATA-AAACATGTAA
1 GGTTCACATAGACAAACATATAA
83775179 GGTT
1 GGTT
83775183 TGCATAGTAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (23 bp):
GGTTCACATAGACAAACATATAA
Found at i:83779254 original size:38 final size:38
Alignment explanation
Indices: 83779202--83779530 Score: 235
Period size: 38 Copynumber: 7.9 Consensus size: 38
83779192 ATTGATTCAT
83779202 TAACGTGGTGCTAAGTGGATATACCACGGTTATACGTG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTATACGTG
* *
83779240 TAACGTGGTACTAAGTGGATATACCACGGTTAAACGTG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTATACGTG
* *
83779278 TAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATG
1 TAACGTGGTGCTAAGTGGATATACCACG---------GTT-ATACGTG
* * * *
83779326 TAACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGG-T---TATA-CG--T--G
* *
83779373 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTATACGTG
* * * *
83779411 TAACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGG-T---TATA-CG--T--G
* * *
83779458 TAACGCGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTATACGTG
* *
83779496 TAACATGGTGCTAAGTGGATATGCCACGGTTATAC
1 TAACGTGGTGCTAAGTGGATATACCACGGTTATAC
83779531 ATGTTAATCT
Statistics
Matches: 228, Mismatches: 35, Indels: 56
0.71 0.11 0.18
Matches are distributed among these distances:
38 121 0.53
39 1 0.00
40 3 0.01
42 6 0.03
43 7 0.03
45 2 0.01
46 2 0.01
47 55 0.24
48 31 0.14
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTATACGTG
Found at i:83779377 original size:133 final size:132
Alignment explanation
Indices: 83779240--83779489 Score: 401
Period size: 133 Copynumber: 1.9 Consensus size: 132
83779230 GTTATACGTG
*
83779240 TAACGTGGTACTAAGTGGATATACCACGGTTAAACGTGTAACGTGGTGCTAAGTGGATATACCAC
1 TAACGTGGTACTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATACCAC
* *
83779305 GATTACACATATTGATACATGTAACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGATT
66 GATTACACATATTGATACAT-TAACACGGTGCTAAGTGGATATACCACGGTTACATATATTGATT
83779370 CAT
130 CAT
* * *
83779373 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCAT
1 TAACGTGGTACTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATACCAC
* * * *
83779438 GGTTACATATATTGATTCATTAACGCGGTGCTAAGTGGATATACCACGGTTA
66 GATTACACATATTGATACATTAACACGGTGCTAAGTGGATATACCACGGTTA
83779490 AACATGTAAC
Statistics
Matches: 107, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
132 29 0.27
133 78 0.73
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (132 bp):
TAACGTGGTACTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATACCAC
GATTACACATATTGATACATTAACACGGTGCTAAGTGGATATACCACGGTTACATATATTGATTC
AT
Found at i:83779387 original size:171 final size:171
Alignment explanation
Indices: 83779102--83779442 Score: 610
Period size: 171 Copynumber: 2.0 Consensus size: 171
83779092 AAAAATGTGT
* * *
83779102 ACGTGTAACGTGGTGCTAAGTGGATATACCATGATTACACGTATTGATACATGTAACGTGGTGCT
1 ACGTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAACATGGTGCT
83779167 AAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGT
66 AAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGT
* *
83779232 TATACGTGTAACGTGGTACTAAGTGGATATACCACGGTTAA
131 TAAACATGTAACGTGGTACTAAGTGGATATACCACGGTTAA
83779273 ACGTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAACATGGTGCT
1 ACGTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAACATGGTGCT
83779338 AAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGT
66 AAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGT
* * *
83779403 TAAACATGTAACGTGGTGCTAAGTGGATATGCCATGGTTA
131 TAAACATGTAACGTGGTACTAAGTGGATATACCACGGTTA
83779443 CATATATTGA
Statistics
Matches: 162, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
171 162 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (171 bp):
ACGTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAACATGGTGCT
AAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGT
TAAACATGTAACGTGGTACTAAGTGGATATACCACGGTTAA
Found at i:83779427 original size:85 final size:85
Alignment explanation
Indices: 83779150--83779527 Score: 504
Period size: 85 Copynumber: 4.4 Consensus size: 85
83779140 ACGTATTGAT
83779150 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
*
83779215 AGTGGATATACCACGGTTAT
66 AGTGGATATACCACGGTTAA
* * * * *
83779235 ACGTGTAACGTGGTACTAAGTGGATATACCACGGTT--A-A-A-CG--T--GTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
*
83779291 AGTGGATATACCACGATTACACATATTGA
66 AGTGGATATACCACG-GT-----TA---A
*
83779320 TACATGTAACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCT
1 -ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCT
83779385 AAGTGGATATACCACGGTTAA
65 AAGTGGATATACCACGGTTAA
* *
83779406 ACATGTAACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATTCATTAACGCGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
83779471 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACGGTTAA
*
83779491 ACATGTAACATGGTGCTAAGTGGATATGCCACGGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
83779528 TACATGTTAA
Statistics
Matches: 255, Mismatches: 19, Indels: 38
0.82 0.06 0.12
Matches are distributed among these distances:
76 28 0.11
77 1 0.00
78 1 0.00
80 1 0.00
81 1 0.00
82 3 0.01
83 1 0.00
85 150 0.59
86 33 0.13
88 1 0.00
89 3 0.01
90 1 0.00
91 1 0.00
93 1 0.00
94 1 0.00
95 28 0.11
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
AGTGGATATACCACGGTTAA
Found at i:83782379 original size:42 final size:42
Alignment explanation
Indices: 83782307--83782491 Score: 149
Period size: 42 Copynumber: 4.3 Consensus size: 42
83782297 CATGTCCCTA
* * * *
83782307 ACATGGTCTTATATG-GGTCTCCATACCGATGCCATATCTCAG
1 ACATGGTCTTATACGAAGTCT-CATATCGATGCCATATCCCAG
* * *
83782349 ATATGGTCTTATACGAAGTCTCATGTCGATGCTGATGCCATGTCCCAA
1 ACATGGTCTTATACGAAGTCTCA--T--AT-C-GATGCCATATCCCAG
* * *
83782397 ACATGGTCTTATACG-GGACCTCATATCGATGCCATGTCCCAG
1 ACATGGTCTTATACGAAG-TCTCATATCGATGCCATATCCCAG
* * * *
83782439 ACATGATCTTACACGAAATCTCATATCAATGCCATATCCCAG
1 ACATGGTCTTATACGAAGTCTCATATCGATGCCATATCCCAG
*
83782481 ATATGGTCTTA
1 ACATGGTCTTA
83782492 CATGAAATCA
Statistics
Matches: 114, Mismatches: 20, Indels: 18
0.75 0.13 0.12
Matches are distributed among these distances:
42 72 0.63
43 5 0.04
44 3 0.03
46 2 0.02
47 2 0.02
48 30 0.26
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (42 bp):
ACATGGTCTTATACGAAGTCTCATATCGATGCCATATCCCAG
Found at i:83782449 original size:90 final size:90
Alignment explanation
Indices: 83782295--83782462 Score: 230
Period size: 90 Copynumber: 1.9 Consensus size: 90
83782285 AAATACCAAA
* * * * * *
83782295 GCCATGTCCCTAACATGGTCTTATATGGGTCTCCATACCGATGCCATATCTCAGATATGGTCTTA
1 GCCATGTCCCAAACATGGTCTTATACGGGCCTCCATACCGATGCCATATCCCAGACATGATCTTA
* *
83782360 TACGAAGTCTCATGTCGATGCTGAT
66 CACGAAATCTCATGTCGATGCTGAT
* *
83782385 GCCATGTCCCAAACATGGTCTTATACGGGACCT-CATATCGATGCCATGTCCCAGACATGATCTT
1 GCCATGTCCCAAACATGGTCTTATACGGG-CCTCCATACCGATGCCATATCCCAGACATGATCTT
83782449 ACACGAAATCTCAT
65 ACACGAAATCTCAT
83782463 ATCAATGCCA
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
90 65 0.97
91 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (90 bp):
GCCATGTCCCAAACATGGTCTTATACGGGCCTCCATACCGATGCCATATCCCAGACATGATCTTA
CACGAAATCTCATGTCGATGCTGAT
Found at i:83782492 original size:42 final size:44
Alignment explanation
Indices: 83782333--83782542 Score: 176
Period size: 42 Copynumber: 4.7 Consensus size: 44
83782323 GTCTCCATAC
* * *
83782333 CGATGCCATATCTCAGATATGGTCTTATACGAAGTCTCATGTCGATG
1 CGATGCCATATCCCAGATATGGTCTTACACGAAATCTCA--TC-ATG
* * * * ** *
83782380 CTGATGCCATGTCCCAAACATGGTCTTATACGGGACCTCAT-AT-
1 C-GATGCCATATCCCAGATATGGTCTTACACGAAATCTCATCATG
* * *
83782423 CGATGCCATGTCCCAGACATGATCTTACACGAAATCTCAT-AT-
1 CGATGCCATATCCCAGATATGGTCTTACACGAAATCTCATCATG
* * *
83782465 CAATGCCATATCCCAGATATGGTCTTACATGAAATCACATACCGATG
1 CGATGCCATATCCCAGATATGGTCTTACACGAAATCTCAT--C-ATG
83782512 CCGATGCCATATCCCAGATATGGTCTTACAC
1 -CGATGCCATATCCCAGATATGGTCTTACAC
83782543 TGGCACACAT
Statistics
Matches: 134, Mismatches: 22, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
42 69 0.51
43 1 0.01
44 2 0.01
46 3 0.02
47 1 0.01
48 58 0.43
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (44 bp):
CGATGCCATATCCCAGATATGGTCTTACACGAAATCTCATCATG
Found at i:83782552 original size:48 final size:48
Alignment explanation
Indices: 83782467--83782686 Score: 153
Period size: 48 Copynumber: 4.6 Consensus size: 48
83782457 TCTCATATCA
* * * *
83782467 ATGCCATATCCCAGATATGGTCTTACA-T-GAAATCACATACCGATGCCG
1 ATGCCATGTCCCAGATATGGTCTTACACTAG-CA-CACATACCAACGCCG
* * *
83782515 ATGCCATATCCCAGATATGGTCTTACACTGGCACACATATCAACGCCG
1 ATGCCATGTCCCAGATATGGTCTTACACTAGCACACATACCAACGCCG
** * * * * ***
83782563 ACT-CTTTGTCCCAAACATGGTCCTACACTAGC-CACATATCAACATTG
1 A-TGCCATGTCCCAGATATGGTCTTACACTAGCACACATACCAACGCCG
* * ** *
83782610 ATGCCATGTCCCAGATATGGTCTTACACTAGCTCTCAT-CTTGGATGCCG
1 ATGCCATGTCCCAGATATGGTCTTACACTAGCACACATAC--CAACGCCG
* *
83782659 ATGCCATGTCCCAAACATGGTCTTACAC
1 ATGCCATGTCCCAGATATGGTCTTACAC
83782687 GGGATCTCAT
Statistics
Matches: 136, Mismatches: 29, Indels: 13
0.76 0.16 0.07
Matches are distributed among these distances:
46 1 0.01
47 37 0.27
48 66 0.49
49 31 0.23
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGATATGGTCTTACACTAGCACACATACCAACGCCG
Found at i:83792088 original size:40 final size:40
Alignment explanation
Indices: 83792052--83792281 Score: 329
Period size: 40 Copynumber: 5.8 Consensus size: 40
83792042 GGATATAGCT
*
83792052 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
**
83792092 GTTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
* *
83792132 ACTCACACAAATGCCTTTGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
83792172 ACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
83792212 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
83792252 ACTAGCACAAATGCCTTCAGGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
83792282 CGTTATCATC
Statistics
Matches: 177, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 175 0.99
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:83792181 original size:80 final size:79
Alignment explanation
Indices: 83792026--83792281 Score: 324
Period size: 80 Copynumber: 3.2 Consensus size: 79
83792016 AAACCAAGTA
* * * *
83792026 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCACACAAATGCCTTCGGGACTTAGCCCGGAAT-TA
** *
83792089 GTAGTTCGCACAAATG
64 GTAACTCACACAAATG
*
83792105 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTTGGGACTTAGCCCGGAATTAG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAG
83792170 TAACTCACACAAATG
65 TAACTCACACAAATG
83792185 CCTTCGGGACTTAGCCCGGA-ATTAGTCACT-AGCACAAATGCCTTCGGGACTTAGCCCGGAATT
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCA-CACAAATGCCTTCGGGACTTAGCCCGGAATT
*
83792248 AGTCACT-AGCACAAATG
63 AGTAACTCA-CACAAATG
*
83792265 CCTTCAGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
83792282 CGTTATCATC
Statistics
Matches: 159, Mismatches: 12, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
79 16 0.10
80 141 0.89
81 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
AACTCACACAAATG
Found at i:83795274 original size:30 final size:30
Alignment explanation
Indices: 83795238--83795298 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
83795228 TTCCCGAGCC
83795238 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * *
83795268 TAGGGGCAAAATTGTAAATTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
83795298 T
1 T
83795299 GAGTTAAGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:83796170 original size:51 final size:51
Alignment explanation
Indices: 83796111--83796301 Score: 269
Period size: 51 Copynumber: 3.8 Consensus size: 51
83796101 CTAGGTTGCA
* * *
83796111 TGTGTAGTACTAAGTGCAAGCTACAATGCGTACCCGATAACTTTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTTGATCACG
* * * * * *
83796162 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-AGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTTGATCACG
*
83796212 TGTGTAGTACTAAGTGCAGGCTACTATGCGTAATC-GATAACTTTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGT-ACCAGATAACTTTGATCACG
83796263 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
83796302 GTTTGGCTAC
Statistics
Matches: 122, Mismatches: 15, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
50 43 0.35
51 79 0.65
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTTGATCACG
Found at i:83796225 original size:101 final size:101
Alignment explanation
Indices: 83796111--83796304 Score: 325
Period size: 101 Copynumber: 1.9 Consensus size: 101
83796101 CTAGGTTGCA
*
83796111 TGTGTAGTACTAAGTGCAAGCTACAATGCGTACCCGATAACTTTGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAAGCTACAATGCGTAACCGATAACTTTGATCACGTGTGTAGTACTAAG
* *
83796176 TGCAGGCTACTACGTGTATCAGATAGTTAGGTCACG
66 TGCAGGCTACTACGCGTACCAGATAGTTAGGTCACG
* * *
83796212 TGTGTAGTACTAAGTGCAGGCTACTATGCGTAATCGATAACTTTGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAAGCTACAATGCGTAACCGATAACTTTGATCACGTGTGTAGTACTAAG
*
83796277 TGCAGGCTACTATGCGTACCAGATAGTT
66 TGCAGGCTACTACGCGTACCAGATAGTT
83796305 TGGCTACATA
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
101 86 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (101 bp):
TGTGTAGTACTAAGTGCAAGCTACAATGCGTAACCGATAACTTTGATCACGTGTGTAGTACTAAG
TGCAGGCTACTACGCGTACCAGATAGTTAGGTCACG
Found at i:83800254 original size:46 final size:46
Alignment explanation
Indices: 83799939--83800254 Score: 232
Period size: 46 Copynumber: 6.7 Consensus size: 46
83799929 ATGTCAATGT
**
83799939 CATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAA-GTTGATGC
1 CATGTCCCAGACATGGTCTTACACTGGCTC--ATCTCAATGCCGATGC
* * *
83799986 CATGTCCCAGACATGGTCTTACACTGACT-ATCGTCATCGAGGCCGACGC
1 CATGTCCCAGACATGGTCTTACACTGGCTCATC-TCA---ATGCCGATGC
* * * * ** *
83800035 CATGTCCCAGATATGGCCTTACACTAGCTCTCATATATCTGTGTCGATGC
1 CATGTCCCAGACATGGTCTTACACT-G-GCTC--ATCTCAATGCCGATGC
* * * *
83800085 CATGTCCCAGACATGCTCTTACACTGACACATCTC-GTAGCCGATG-
1 CATGTCCCAGACATGGTCTTACACTGGCTCATCTCAAT-GCCGATGC
* * * * *
83800130 CATGTCCCAGACAT-TTATTACACTGGCTTACGTCTCGAGGCCGATG-
1 CATGTCCCAGACATGGTCTTACACTGGC-T-CATCTCAATGCCGATGC
* *
83800176 CATGTCCCAGACAT-ATCTTACACTAGCTCTCATCTCAATGCCGATGC
1 CATGTCCCAGACATGGTCTTACACT-G-GCTCATCTCAATGCCGATGC
*
83800223 CATGTCCCAGACACGGTCTTACACTGGCTCAT
1 CATGTCCCAGACATGGTCTTACACTGGCTCAT
83800255 AATAACCCAT
Statistics
Matches: 215, Mismatches: 36, Indels: 37
0.75 0.12 0.13
Matches are distributed among these distances:
44 13 0.06
45 19 0.09
46 62 0.29
47 44 0.20
48 13 0.06
49 29 0.13
50 29 0.13
51 2 0.01
53 2 0.01
54 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCATCTCAATGCCGATGC
Found at i:83804819 original size:43 final size:42
Alignment explanation
Indices: 83804771--83804873 Score: 163
Period size: 43 Copynumber: 2.4 Consensus size: 42
83804761 TTCAACGAAC
*
83804771 TCGCACACTTAGTGCCAATTAATT-CTTCGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAAATAATTAC-T-GAAGCTATAATTGTA
83804814 TCGCACACTTAGTGCCAAATAATTAGCTGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAAATAATTA-CTGAAGCTATAATTGTA
83804857 TCGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
83804874 TTACATTAAA
Statistics
Matches: 57, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
43 55 0.96
44 1 0.02
45 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (42 bp):
TCGCACACTTAGTGCCAAATAATTACTGAAGCTATAATTGTA
Found at i:83811077 original size:29 final size:29
Alignment explanation
Indices: 83811008--83811123 Score: 135
Period size: 29 Copynumber: 4.0 Consensus size: 29
83810998 TACCTATATC
* ** *
83811008 TGGCCCACCAGGCCC-AATCACAACTGTA
1 TGGCCCATCAGGCCCAAATCACATTTATA
* * * **
83811036 CGGTCCATTAGGCCCAAATTGCATTTATA
1 TGGCCCATCAGGCCCAAATCACATTTATA
83811065 TGGCCCATCAGGCCCAAATCACATTTATA
1 TGGCCCATCAGGCCCAAATCACATTTATA
*
83811094 TGGCCCATCAGGCCCAAATCACATTCATA
1 TGGCCCATCAGGCCCAAATCACATTTATA
83811123 T
1 T
83811124 TCATGCTTGC
Statistics
Matches: 72, Mismatches: 15, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
28 11 0.15
29 61 0.85
ACGTcount: A:0.29, C:0.32, G:0.16, T:0.23
Consensus pattern (29 bp):
TGGCCCATCAGGCCCAAATCACATTTATA
Found at i:83817038 original size:46 final size:47
Alignment explanation
Indices: 83816970--83817095 Score: 132
Period size: 46 Copynumber: 2.7 Consensus size: 47
83816960 ATCTCGTAGT
* * * * *
83816970 CGATG-CATGTGCCATATATGTCTTACACTGGC-TTACGTCCCAAGGC
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCACT-CGTCCCAAGGC
* * *
83817016 CGAT-TCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGC
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCACTCGTCCCAAGGC
*
83817062 CGATGCCATGTTCCAGACATGGTCTTACACTAGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAGC
83817096 TCTCATAATG
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
46 40 0.60
47 14 0.21
48 13 0.19
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGTCTTACACTAGCACTCGTCCCAAGGC
Found at i:83823964 original size:40 final size:40
Alignment explanation
Indices: 83823860--83824058 Score: 298
Period size: 40 Copynumber: 5.0 Consensus size: 40
83823850 GATGATAACG
* *
83823860 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
83823900 GGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
83823939 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
**
83823979 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
83824019 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
83824059 AGTTAAATCC
Statistics
Matches: 150, Mismatches: 6, Indels: 6
0.93 0.04 0.04
Matches are distributed among these distances:
39 39 0.26
40 110 0.73
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:83828183 original size:93 final size:93
Alignment explanation
Indices: 83828054--83828225 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
83828044 CTCCCATAAG
* * *
83828054 CGAATTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
83828119 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
83828147 CGAACTCGGACTCAACTTAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTC
83828211 AACGAGTTCGGATGC
65 AACGAGTTCGGATGC
83828226 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:83828220 original size:46 final size:46
Alignment explanation
Indices: 83828047--83828222 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
83828037 TGTAACCCTC
* * *
83828047 CCATAAGCGAATTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* * *
83828093 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
83828143 -C-TCA-CGAACTCGGACTCAACTTAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
83828186 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
83828223 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 14, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 58 0.55
47 27 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:83828241 original size:46 final size:44
Alignment explanation
Indices: 83828098--83828241 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 44
83828088 CGCATCCATA
*
83828098 AGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * * *
83828145 CA-CGAACTCGGACTCAACTTAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
83828191 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
83828237 AGTGA
1 AGTGA
83828242 CATGTCACTT
Statistics
Matches: 77, Mismatches: 12, Indels: 16
0.73 0.11 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 32 0.42
47 29 0.38
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:83833980 original size:40 final size:40
Alignment explanation
Indices: 83833924--83834138 Score: 285
Period size: 40 Copynumber: 5.4 Consensus size: 40
83833914 GATGATAACA
* * * *
83833924 GGGCTAAGTCCAGAAGGCATTTGAGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
83833964 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
*
83834004 GGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
**
83834044 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
83834084 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
83834124 -GGTTAAATCCCGAAG
1 GGGCTAAGTCCCGAAG
83834139 ATACTTGGTT
Statistics
Matches: 161, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 15 0.09
40 145 0.90
41 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:83835558 original size:17 final size:17
Alignment explanation
Indices: 83835519--83835559 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
83835509 ATATTACTTG
*
83835519 TGATTATGGAATTGAAT
1 TGATTATGGAATTAAAT
83835536 TGATTATGGAATATAAAT
1 TGATTATGGAAT-TAAAT
83835554 T-ATTAT
1 TGATTAT
83835560 TAACTGTTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.39, C:0.00, G:0.17, T:0.44
Consensus pattern (17 bp):
TGATTATGGAATTAAAT
Found at i:83835992 original size:24 final size:24
Alignment explanation
Indices: 83835965--83836017 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
83835955 ACAACCACTG
* *
83835965 CCTCCTACTTTACCACCTGTTATA
1 CCTCCTACTATACCACCTGTGATA
* *
83835989 CCTCCTACTATACCCCCTGTGATG
1 CCTCCTACTATACCACCTGTGATA
83836013 CCTCC
1 CCTCC
83836018 ACCTCCTCCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.17, C:0.43, G:0.08, T:0.32
Consensus pattern (24 bp):
CCTCCTACTATACCACCTGTGATA
Found at i:83840706 original size:10 final size:10
Alignment explanation
Indices: 83840691--83840715 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
83840681 GAACTCATAT
83840691 TAGCTTAATC
1 TAGCTTAATC
83840701 TAGCTTAATC
1 TAGCTTAATC
83840711 TAGCT
1 TAGCT
83840716 ATTCCGAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.40
Consensus pattern (10 bp):
TAGCTTAATC
Found at i:83844682 original size:33 final size:33
Alignment explanation
Indices: 83844640--83844707 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
83844630 TTTTGCAACT
83844640 TATGCAAAATAGTCCTTTTAGGTGTTTCCATGC
1 TATGCAAAATAGTCCTTTTAGGTGTTTCCATGC
83844673 TATGCAAAATAGTCCTTTTAGGTGTTTCCATGC
1 TATGCAAAATAGTCCTTTTAGGTGTTTCCATGC
83844706 TA
1 TA
83844708 ACACCTTTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.40
Consensus pattern (33 bp):
TATGCAAAATAGTCCTTTTAGGTGTTTCCATGC
Found at i:83846442 original size:18 final size:18
Alignment explanation
Indices: 83846419--83846471 Score: 106
Period size: 18 Copynumber: 2.9 Consensus size: 18
83846409 GAACTTGCAT
83846419 ACTGTTTACTATTACTGC
1 ACTGTTTACTATTACTGC
83846437 ACTGTTTACTATTACTGC
1 ACTGTTTACTATTACTGC
83846455 ACTGTTTACTATTACTG
1 ACTGTTTACTATTACTG
83846472 TAATGGGCCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.23, C:0.21, G:0.11, T:0.45
Consensus pattern (18 bp):
ACTGTTTACTATTACTGC
Found at i:83850327 original size:40 final size:40
Alignment explanation
Indices: 83850279--83850466 Score: 324
Period size: 40 Copynumber: 4.7 Consensus size: 40
83850269 GCTACTAGCT
83850279 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
83850319 CAATTGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
83850359 CAATTGCCTTCGGCACTTGGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
83850399 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
83850439 CAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
83850467 CAATCCGAAT
Statistics
Matches: 140, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 13 0.09
40 127 0.91
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:83850382 original size:80 final size:79
Alignment explanation
Indices: 83850246--83850466 Score: 320
Period size: 80 Copynumber: 2.8 Consensus size: 79
83850236 AAACCAAGTA
** * *
83850246 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTC-GGACTTAGCCCGGTTATA
*
83850309 GTAACTCGCACAATTG
64 GTAACTCGCACAAATG
* * *
83850325 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGCACTTGGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGG-ACTTAGCCCGGTTATAG
83850390 TAACTCGCACAAATG
65 TAACTCGCACAAATG
*
83850405 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGTTAT
83850467 CAATCCGAAT
Statistics
Matches: 127, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 28 0.22
80 99 0.78
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGTTATAGT
AACTCGCACAAATG
Found at i:83853437 original size:46 final size:45
Alignment explanation
Indices: 83853352--83853485 Score: 146
Period size: 46 Copynumber: 2.9 Consensus size: 45
83853342 CATTGGGTGG
* * *
83853352 TATGTGAGCCAGTGTAAGACATGTCTGGGACATGTATCAGCCACAT
1 TATGAGAGCAAGTGTAAGACATGTCTGGGACATGCATCAGCC-CAT
* * *
83853398 TATGAGAGCTAGTTTAAGACATGTCTGGGAAATGCATCAG--CAT
1 TATGAGAGCAAGTGTAAGACATGTCTGGGACATGCATCAGCCCAT
* *
83853441 TGAGACGAGAGCAAGTGTAAGACATGTCTAGGACATGCATCAGCC
1 T---ATGAGAGCAAGTGTAAGACATGTCTGGGACATGCATCAGCC
83853486 TCAAGATATA
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
43 4 0.05
46 69 0.95
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (45 bp):
TATGAGAGCAAGTGTAAGACATGTCTGGGACATGCATCAGCCCAT
Found at i:83853599 original size:49 final size:49
Alignment explanation
Indices: 83853537--83853657 Score: 172
Period size: 49 Copynumber: 2.5 Consensus size: 49
83853527 TGTTGCGTGT
*
83853537 CAGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGC
* * * * *
83853586 CAGTGTAAAACCTGTCTGGGACATGGCATTGGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
83853635 CAGTGTAAGACCTGTCTGGGACA
1 CAGTGTAAGACCTGTCTGGGACA
83853658 CAGCATCAAC
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
48 1 0.02
49 63 0.98
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
Found at i:83864644 original size:42 final size:41
Alignment explanation
Indices: 83864536--83864652 Score: 103
Period size: 43 Copynumber: 2.8 Consensus size: 41
83864526 ATCTGAGATA
* * *
83864536 TCGTGTAAGACCGTCTCTAGGACACAGGCCTCGATTGAGTTT
1 TCGTGTAAGACCATGTCTAGGACACAGGCATCGATTGAG-TT
* * *
83864578 TACGTATAAGACCATGTTTGGGACATC-GGCATCGTATCTGA-TT
1 T-CGTGTAAGACCATGTCTAGGACA-CAGGCATCG-AT-TGAGTT
* *
83864621 TCGTGTAAGACCCTGTCTAGGACAAAGGCATC
1 TCGTGTAAGACCATGTCTAGGACACAGGCATC
83864653 AATATTGAAT
Statistics
Matches: 59, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
42 26 0.44
43 27 0.46
44 3 0.05
45 3 0.05
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTAGGACACAGGCATCGATTGAGTT
Found at i:83870848 original size:46 final size:46
Alignment explanation
Indices: 83870796--83870924 Score: 156
Period size: 46 Copynumber: 2.8 Consensus size: 46
83870786 AGTGGCATGT
* * *
83870796 GAGCCAGTGTAAGATATGTCAGGGACATGCATCGGCCACATT-ATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTGACGA
* *
83870842 GAGCCAGTGCAAGACATGTCTGGGACATGTATCGG--CATTGAGACGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCCATT--GACGA
*
83870888 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC
83870925 TCGAGATATA
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
43 4 0.06
46 66 0.94
ACGTcount: A:0.28, C:0.20, G:0.31, T:0.21
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTGACGA
Found at i:83874675 original size:18 final size:19
Alignment explanation
Indices: 83874631--83874668 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
83874621 CAAAAATAAA
83874631 TAAATATTTGTATTATATT
1 TAAATATTTGTATTATATT
*
83874650 TAAATATTT-TATTTTATT
1 TAAATATTTGTATTATATT
83874668 T
1 T
83874669 TCATATTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (19 bp):
TAAATATTTGTATTATATT
Found at i:83874797 original size:50 final size:50
Alignment explanation
Indices: 83874743--83874852 Score: 184
Period size: 50 Copynumber: 2.2 Consensus size: 50
83874733 ACTTCAAATT
*
83874743 TCAATAATTGAGCTTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGC
1 TCAATTATTGAGCTTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGC
* * *
83874793 TCAATTATTGTGGTTTTCTTGTTGGCACCTCAAATTTCAATAAGAAAAGC
1 TCAATTATTGAGCTTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGC
83874843 TCAATTATTG
1 TCAATTATTG
83874853 TGGTGACCCA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 56 1.00
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (50 bp):
TCAATTATTGAGCTTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGC
Found at i:83874853 original size:50 final size:50
Alignment explanation
Indices: 83874756--83874856 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
83874746 ATAATTGAGC
83874756 TTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGCTCAATTATTGTGG
1 TTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGCTCAATTATTGTGG
*
83874806 TTTTCTTGTTGGCACCTCAAATTTCAATAAGAAAAGCTCAATTATTGTGG
1 TTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGCTCAATTATTGTGG
83874856 T
1 T
83874857 GACCCAACTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.39
Consensus pattern (50 bp):
TTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGCTCAATTATTGTGG
Found at i:83887418 original size:48 final size:48
Alignment explanation
Indices: 83887365--83887465 Score: 175
Period size: 48 Copynumber: 2.1 Consensus size: 48
83887355 TTTATATGAA
83887365 TTGAAATAATTTGAACATATGTGGTAAATTTGACTGAGTGAATAGTAG
1 TTGAAATAATTTGAACATATGTGGTAAATTTGACTGAGTGAATAGTAG
* * *
83887413 TTGAAATAATTTTAATATATGTGGTAAATTTGACTGGGTGAATAGTAG
1 TTGAAATAATTTGAACATATGTGGTAAATTTGACTGAGTGAATAGTAG
83887461 TTGAA
1 TTGAA
83887466 GTAGGGTTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.37, C:0.03, G:0.23, T:0.38
Consensus pattern (48 bp):
TTGAAATAATTTGAACATATGTGGTAAATTTGACTGAGTGAATAGTAG
Found at i:83887721 original size:24 final size:25
Alignment explanation
Indices: 83887693--83887745 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 25
83887683 AATATGAGAA
83887693 AGTATGTGATATTTTCATGAG-GGG
1 AGTATGTGATATTTTCATGAGAGGG
83887717 AGTATGTGATATTTTCATGAGAGGG
1 AGTATGTGATATTTTCATGAGAGGG
83887742 AGTA
1 AGTA
83887746 AATACGCGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 21 0.75
25 7 0.25
ACGTcount: A:0.28, C:0.04, G:0.32, T:0.36
Consensus pattern (25 bp):
AGTATGTGATATTTTCATGAGAGGG
Found at i:83892643 original size:29 final size:28
Alignment explanation
Indices: 83892573--83892644 Score: 83
Period size: 28 Copynumber: 2.5 Consensus size: 28
83892563 AGATCTTTTT
*
83892573 TGGTCA-TCTAACCATGAAAAGTTATAAA
1 TGGTCACTCT-ACTATGAAAAGTTATAAA
* * *
83892601 TAGTCACCCAACTATGAAAAGTTATAAAA
1 TGGTCACTCTACTATGAAAAGTTAT-AAA
83892630 TGGTCACTCTACTAT
1 TGGTCACTCTACTAT
83892645 TCATTTTTGT
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
28 19 0.54
29 16 0.46
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.29
Consensus pattern (28 bp):
TGGTCACTCTACTATGAAAAGTTATAAA
Found at i:83894237 original size:7 final size:8
Alignment explanation
Indices: 83894217--83894250 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
83894207 CTCACATTAA
83894217 TAAAAAAT
1 TAAAAAAT
83894225 TAAAAAAT
1 TAAAAAAT
83894233 TAAAAAAT
1 TAAAAAAT
83894241 T-AAAAAT
1 TAAAAAAT
83894248 TAA
1 TAA
83894251 GATAAAATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 7 0.28
8 18 0.72
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (8 bp):
TAAAAAAT
Found at i:83894238 original size:16 final size:15
Alignment explanation
Indices: 83894217--83894250 Score: 59
Period size: 15 Copynumber: 2.2 Consensus size: 15
83894207 CTCACATTAA
83894217 TAAAAAATTAAAAAAT
1 TAAAAAATT-AAAAAT
83894233 TAAAAAATTAAAAAT
1 TAAAAAATTAAAAAT
83894248 TAA
1 TAA
83894251 GATAAAATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAAATTAAAAAT
Found at i:83894387 original size:20 final size:19
Alignment explanation
Indices: 83894359--83894398 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
83894349 AACGATAATA
83894359 AATTATAAAAATTATAAAT
1 AATTATAAAAATTATAAAT
*
83894378 AATTATTAAAAATTCTAAAT
1 AATTA-TAAAAATTATAAAT
83894398 A
1 A
83894399 TATATAATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (19 bp):
AATTATAAAAATTATAAAT
Found at i:83897571 original size:5 final size:5
Alignment explanation
Indices: 83897528--83897565 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
83897518 TTTAAGTAAT
83897528 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATA
83897566 ATATAACTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:83897593 original size:16 final size:19
Alignment explanation
Indices: 83897545--83897586 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
83897535 ATAATATAAT
* *
83897545 ATAATATAA-TATAATATA
1 ATAATATAACTAAAACATA
83897563 ATAATATAACTAAAACATA
1 ATAATATAACTAAAACATA
83897582 A-AATA
1 ATAATA
83897587 AACAAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (19 bp):
ATAATATAACTAAAACATA
Found at i:83903943 original size:30 final size:29
Alignment explanation
Indices: 83903895--83903955 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
83903885 CAAGTAGCCG
83903895 AAGCTAGTTAAATAGCACACTTAGTGCCA
1 AAGCTAGTTAAATAGCACACTTAGTGCCA
*
83903924 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAG-TTAAATAGCACACTTAGTGCCA
83903954 AA
1 AA
83903956 ACTTCATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.23
30 23 0.77
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (29 bp):
AAGCTAGTTAAATAGCACACTTAGTGCCA
Found at i:83909489 original size:27 final size:27
Alignment explanation
Indices: 83909459--83909636 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
83909449 ATATCGAGTC
* * * *
83909459 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
83909486 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
83909513 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
83909541 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
83909568 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
83909595 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
83909622 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
83909637 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:83909598 original size:82 final size:81
Alignment explanation
Indices: 83909480--83909635 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
83909470 TGCTATATAA
* *
83909480 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
83909545 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
83909562 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
83909626 CACTTAGTGC
65 CACTTAGTGC
83909636 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:83914277 original size:18 final size:18
Alignment explanation
Indices: 83914236--83914277 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
83914226 ATAATATAAT
* *
83914236 ATAATATAATATAATATA
1 ATAATATAATAAAACATA
83914254 ATAATATAACTAAAACATA
1 ATAATATAA-TAAAACATA
83914273 A-AATA
1 ATAATA
83914278 AAGAAAGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (18 bp):
ATAATATAATAAAACATA
Found at i:83914279 original size:5 final size:5
Alignment explanation
Indices: 83914224--83914256 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
83914214 TTTAAATAAT
83914224 ATATA ATATA ATATA ATATA ATATA ATATA ATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATA
83914257 ATATAACTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:83914343 original size:13 final size:14
Alignment explanation
Indices: 83914320--83914370 Score: 63
Period size: 14 Copynumber: 3.8 Consensus size: 14
83914310 ACAGAAGGTT
*
83914320 GAAACGAAAAAGGGA
1 GAAA-GAAAAAGGAA
83914335 GAAAGAAAAAGGAA
1 GAAAGAAAAAGGAA
83914349 GAAAG-AAAA--AA
1 GAAAGAAAAAGGAA
83914360 GAAAGAAAAAG
1 GAAAGAAAAAG
83914371 AAAGGGGAGA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
11 7 0.21
12 4 0.12
13 4 0.12
14 14 0.42
15 4 0.12
ACGTcount: A:0.71, C:0.02, G:0.27, T:0.00
Consensus pattern (14 bp):
GAAAGAAAAAGGAA
Found at i:83915086 original size:16 final size:17
Alignment explanation
Indices: 83915048--83915086 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
83915038 TAAGTAAATA
83915048 ATATT-ATATTATAATT
1 ATATTAATATTATAATT
83915064 ATATTAATATTATAA-T
1 ATATTAATATTATAATT
83915080 ATATTAA
1 ATATTAA
83915087 ATGAATAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATATTAATATTATAATT
Found at i:83925151 original size:77 final size:77
Alignment explanation
Indices: 83925024--83925175 Score: 205
Period size: 77 Copynumber: 2.0 Consensus size: 77
83925014 AGTGCAATGC
* * * * * *
83925024 GGTAATCCGCTATATCGATAGGTTGCAATAAAATTGCCTGTTTAGTCAAAGGTACGTAGCGTAGC
1 GGTAATCCGCTATACCGATAGGTTGCAATAAAACTACCAGTTCAGTCAAAGGTACGTAGCGTAAC
*
83925089 TAATGTACATGT
66 TAACGTACATGT
* * * *
83925101 GGTAATCCGTTATACCGATATGTTGTAGTAAAACTACCAGTTCAGTCAAAGGTACGTAGCGTAAC
1 GGTAATCCGCTATACCGATAGGTTGCAATAAAACTACCAGTTCAGTCAAAGGTACGTAGCGTAAC
83925166 TAACGTACAT
66 TAACGTACAT
83925176 ACGGTACAGT
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
77 64 1.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.30
Consensus pattern (77 bp):
GGTAATCCGCTATACCGATAGGTTGCAATAAAACTACCAGTTCAGTCAAAGGTACGTAGCGTAAC
TAACGTACATGT
Found at i:83925336 original size:92 final size:92
Alignment explanation
Indices: 83925101--83925483 Score: 525
Period size: 92 Copynumber: 4.2 Consensus size: 92
83925091 ATGTACATGT
* * * * *
83925101 GGTAATCCGTTATACCGATATGTTGTAGTAAAACTACCAGTTCAGTCAAAGGTACGTAGCGTAAC
1 GGTAATCCGCTATACCGATAGGTTGCAGTAAAACTGCCAGTTCAGTCAAAGGTACGTAGCGTAGC
*
83925166 TAACGTACATACGGTACAGTGCAGTGC
66 TAACGTACATACGGTACAGTGCAATGC
* * * * * * * *
83925193 -TTAATTCGTTATACCGATAGCTTACAGTAAAATTGCTAGTTCAGTCAAAGGTATGTAGCGTAGC
1 GGTAATCCGCTATACCGATAGGTTGCAGTAAAACTGCCAGTTCAGTCAAAGGTACGTAGCGTAGC
*
83925257 TAACGTACATGCGGTACAGTGCAATGC
66 TAACGTACATACGGTACAGTGCAATGC
* * *
83925284 GGTAATCCGCTATATCGATAGGTTGCAGTAAAATTGCCAGTTCAGTCAAAGGTACGTAGTGTAGC
1 GGTAATCCGCTATACCGATAGGTTGCAGTAAAACTGCCAGTTCAGTCAAAGGTACGTAGCGTAGC
* **
83925349 TAACGAACATACGACACAGTGCAATGC
66 TAACGTACATACGGTACAGTGCAATGC
*
83925376 GGTAATCCGCTATACCGATAGGTTGCAGTAAAACTGCCAGTTCAGTCAAAGGTATGTAGCGTAGC
1 GGTAATCCGCTATACCGATAGGTTGCAGTAAAACTGCCAGTTCAGTCAAAGGTACGTAGCGTAGC
* *
83925441 TAACGTACATATGGTACAGTCCAATGC
66 TAACGTACATACGGTACAGTGCAATGC
* *
83925468 AGTAATTCGCTATACC
1 GGTAATCCGCTATACC
83925484 AATATCGATA
Statistics
Matches: 253, Mismatches: 37, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
91 78 0.31
92 175 0.69
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (92 bp):
GGTAATCCGCTATACCGATAGGTTGCAGTAAAACTGCCAGTTCAGTCAAAGGTACGTAGCGTAGC
TAACGTACATACGGTACAGTGCAATGC
Found at i:83926014 original size:21 final size:20
Alignment explanation
Indices: 83925947--83926024 Score: 66
Period size: 21 Copynumber: 3.7 Consensus size: 20
83925937 GTCCAAACGC
*
83925947 CCGTGTGAAGGGTAGCACACGG
1 CCGTGTGAAGAG--GCACACGG
* *
83925969 CCGTGTGACAGAGGCACATGC
1 CCGTGTGA-AGAGGCACACGG
*
83925990 CCGTGTGAAGTAGGGACACGG
1 CCGTGTGAAG-AGGCACACGG
* *
83926011 CCGTATGAACAGGC
1 CCGTGTGAAGAGGC
83926025 CGTGTAACTC
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
20 5 0.11
21 29 0.64
22 8 0.18
23 3 0.07
ACGTcount: A:0.24, C:0.24, G:0.37, T:0.14
Consensus pattern (20 bp):
CCGTGTGAAGAGGCACACGG
Found at i:83926833 original size:26 final size:26
Alignment explanation
Indices: 83926790--83926839 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
83926780 TAAAATGAAA
* * * *
83926790 TAAAAATAAGTAGTAGAATAAAAACT
1 TAAAAAGAAGAAGAAGAAGAAAAACT
83926816 TAAAAAGAAGAAGAAGAAGAAAAA
1 TAAAAAGAAGAAGAAGAAGAAAAA
83926840 AATTCATCCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.68, C:0.02, G:0.16, T:0.14
Consensus pattern (26 bp):
TAAAAAGAAGAAGAAGAAGAAAAACT
Found at i:83931446 original size:21 final size:19
Alignment explanation
Indices: 83931409--83931451 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
83931399 TAGAAAATGA
83931409 TTTTTAAAAAATGAATTTAT
1 TTTTTAAAAAATGAATTT-T
* *
83931429 TTTTTAGAAAATTTAATTTT
1 TTTTTA-AAAAATGAATTTT
83931449 TTT
1 TTT
83931452 AGTGTTTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (19 bp):
TTTTTAAAAAATGAATTTT
Found at i:83942319 original size:15 final size:15
Alignment explanation
Indices: 83942301--83942330 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
83942291 ACTAGAAGTG
83942301 CTCTCAACAGAAACC
1 CTCTCAACAGAAACC
*
83942316 CTCTTAACAGAAACC
1 CTCTCAACAGAAACC
83942331 TTTAAGTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.37, G:0.07, T:0.17
Consensus pattern (15 bp):
CTCTCAACAGAAACC
Found at i:83949020 original size:26 final size:26
Alignment explanation
Indices: 83948962--83949045 Score: 131
Period size: 26 Copynumber: 3.3 Consensus size: 26
83948952 CTGGAGGCCT
83948962 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
83948986 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
83949012 AGCCCTTTTCAATAAACTGGGGCAT-
1 AGCCCTTTTCAATAAACTGGGGCATA
83949037 AGCCCTTTT
1 AGCCCTTTT
83949046 GCACTTCCTC
Statistics
Matches: 57, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
23 5 0.09
24 7 0.12
25 19 0.33
26 26 0.46
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:83949120 original size:20 final size:20
Alignment explanation
Indices: 83949095--83949169 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
83949085 TTATGATTAC
*
83949095 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
*
83949115 ATCATGTCCATATCATACAT
1 ATCATGTGCATATCATACAT
83949135 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
83949155 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
83949170 TCTCACATAT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
18 8 0.16
20 41 0.80
21 2 0.04
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:83949126 original size:11 final size:11
Alignment explanation
Indices: 83949110--83949162 Score: 51
Period size: 11 Copynumber: 5.2 Consensus size: 11
83949100 GTGCATTTCA
83949110 TACATATCATG
1 TACATATCATG
*
83949121 TCCATATCA--
1 TACATATCATG
83949130 TACATATCATG
1 TACATATCATG
* *
83949141 TGCATATCATA
1 TACATATCATG
83949152 T-CA-ATCATG
1 TACATATCATG
83949161 TA
1 TA
83949163 TATCATATCT
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
9 14 0.41
10 2 0.06
11 18 0.53
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.36
Consensus pattern (11 bp):
TACATATCATG
Found at i:83949167 original size:9 final size:10
Alignment explanation
Indices: 83949112--83949168 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
83949102 GCATTTCATA
83949112 CATATCATGT
1 CATATCATGT
*
83949122 CCATATCAT-A
1 -CATATCATGT
83949132 CATATCATGT
1 CATATCATGT
*
83949142 GCATATCATAT
1 -CATATCATGT
83949153 CA-ATCATGT
1 CATATCATGT
83949162 -ATATCAT
1 CATATCAT
83949169 ATCTCACATA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.35, C:0.21, G:0.07, T:0.37
Consensus pattern (10 bp):
CATATCATGT
Found at i:83962972 original size:13 final size:13
Alignment explanation
Indices: 83962954--83963006 Score: 97
Period size: 13 Copynumber: 4.1 Consensus size: 13
83962944 GAAGTAATTG
83962954 CACACGGGCGTGT
1 CACACGGGCGTGT
83962967 CACACGGGCGTGT
1 CACACGGGCGTGT
*
83962980 CACATGGGCGTGT
1 CACACGGGCGTGT
83962993 CACACGGGCGTGT
1 CACACGGGCGTGT
83963006 C
1 C
83963007 TTTGCCGAGC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 38 1.00
ACGTcount: A:0.15, C:0.30, G:0.38, T:0.17
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:83980343 original size:49 final size:49
Alignment explanation
Indices: 83980212--83980904 Score: 1061
Period size: 49 Copynumber: 14.6 Consensus size: 49
83980202 TATTTGAATA
*
83980212 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
83980259 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
83980306 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
83980355 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
83980404 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
83980451 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
83980500 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
83980549 AATGTGAAA--G------TATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
83980590 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
83980639 AATGTGAAAGTGTAAATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
83980688 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
83980737 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
83980784 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
83980831 AATGTGAAAGTG--TATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
83980878 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
83980905 TCCCGAAGGG
Statistics
Matches: 612, Mismatches: 20, Indels: 28
0.93 0.03 0.04
Matches are distributed among these distances:
41 40 0.07
43 1 0.00
47 248 0.41
48 1 0.00
49 322 0.53
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:83980387 original size:145 final size:145
Alignment explanation
Indices: 83980212--83980904 Score: 1153
Period size: 145 Copynumber: 4.9 Consensus size: 145
83980202 TATTTGAATA
*
83980212 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
83980275 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGA
83980340 ATGGCCAATGTGATG
131 ATGGCCAATGTGATG
83980355 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
83980420 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGA
83980485 ATGGCCAATGTGATG
131 ATGGCCAATGTGATG
83980500 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--G----
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
83980559 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGA
83980624 ATGGCCAATGTGATG
131 ATGGCCAATGTGATG
* *
83980639 AATGTGAAAGTGTAAATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
* *
83980704 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
64 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
83980767 TAATGGCCGATGTGATG
129 GAATGGCCAATGTGATG
83980784 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * *
83980847 TATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
83980905 TCCCGAAGGG
Statistics
Matches: 523, Mismatches: 15, Indels: 26
0.93 0.03 0.05
Matches are distributed among these distances:
139 134 0.26
141 52 0.10
142 1 0.00
143 60 0.11
145 233 0.45
147 43 0.08
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (145 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGA
ATGGCCAATGTGATG
Found at i:83980547 original size:22 final size:22
Alignment explanation
Indices: 83980519--83980588 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
83980509 GTGTATATAT
83980519 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* * *
83980541 ATGTGATGAATG--TGAA-AG--T
1 ATGTGAT-AAGGCCT-AATGGCCG
83980560 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
83980582 ATGTGAT
1 ATGTGAT
83980589 GAATGTGAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 14
0.64 0.11 0.25
Matches are distributed among these distances:
18 3 0.09
19 9 0.26
20 2 0.06
21 2 0.06
22 16 0.46
23 3 0.09
ACGTcount: A:0.30, C:0.11, G:0.31, T:0.27
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:83981161 original size:37 final size:37
Alignment explanation
Indices: 83981023--83981160 Score: 231
Period size: 37 Copynumber: 3.7 Consensus size: 37
83981013 CCGAGCTCTA
*
83981023 AAGACCCGATGATTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
83981060 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
83981097 AAGACCTGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
83981134 AAGACCCGATAACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
83981161 TCGTCTGAGC
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 95 1.00
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Done.