Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 255 of 333
Found at i:83982841 original size:68 final size:63
Alignment explanation
Indices: 83982748--83982938 Score: 212
Period size: 61 Copynumber: 3.0 Consensus size: 63
83982738 ATTTTAATAT
*
83982748 ATTTAATATTAAATTTAAATTAATATTTATCTTATTAGTATTTTATTAATTTAATATTAAAGTGA
1 ATTTAATATTAAA-TTAAATTAATATTTATCTTATTAGTATTATATT-ATTTAATATTAAAGT-A
*
83982813 TT
63 -G
*
83982815 ATCTTAATATTAAATTAAATTAAATATTTATCTTA-TAGGTA-TATATCATATTAA-ATT-AA-T
1 AT-TTAATATTAAATTAAATT-AATATTTATCTTATTA-GTATTATATTAT-TTAATATTAAAGT
83982875 AG
62 AG
* *
83982877 ATTTAATATTAAATTTAATCTAATATTTATCTTGATAAGTATTATATTATTTAATATTAAAG
1 ATTTAATATTAAATTAAAT-TAATATTTATCTT-ATTAGTATTATATTATTTAATATTAAAG
83982939 AAATTAAGTT
Statistics
Matches: 107, Mismatches: 6, Indels: 24
0.78 0.04 0.18
Matches are distributed among these distances:
61 28 0.26
62 11 0.10
63 12 0.11
64 3 0.03
65 2 0.02
66 5 0.05
67 19 0.18
68 27 0.25
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (63 bp):
ATTTAATATTAAATTAAATTAATATTTATCTTATTAGTATTATATTATTTAATATTAAAGTAG
Found at i:83989874 original size:48 final size:49
Alignment explanation
Indices: 83989806--83989935 Score: 147
Period size: 48 Copynumber: 2.7 Consensus size: 49
83989796 ACATCAAAGT
* *
83989806 CGATGCC-ATGTCCTAAACAGGTCTTATACTGACTATCATATATCGAGGC
1 CGATGCCGA-GTCCCAAACAGGTCTTACACTGACTATCATATATCGAGGC
* * * * *
83989855 CGAT-CCGTGTCCCAGACAGGTTTTACACTTACTTTCATATATCGAGGC
1 CGATGCCGAGTCCCAAACAGGTCTTACACTGACTATCATATATCGAGGC
* **
83989903 TGATGTTGAGTCCCAAACAGGTCTTACACTGAC
1 CGATGCCGAGTCCCAAACAGGTCTTACACTGAC
83989936 ACACAACAAG
Statistics
Matches: 65, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
48 39 0.60
49 26 0.40
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.29
Consensus pattern (49 bp):
CGATGCCGAGTCCCAAACAGGTCTTACACTGACTATCATATATCGAGGC
Found at i:83990013 original size:48 final size:46
Alignment explanation
Indices: 83989953--83990070 Score: 139
Period size: 46 Copynumber: 2.5 Consensus size: 46
83989943 AAGCTGACGC
* * * *
83989953 CATGTCCTAGACAAGTCTTACACTGGCT-TGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CA-ATAT-GAGGCCGATG
*
83990001 CATGTCCCAGACATGTCTTACACTGGCTCTCAATATGTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCAATATGAGGCCGATG
* *
83990047 CATGTCTCAGATATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
83990071 AGCACACATA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
46 31 0.50
47 3 0.05
48 27 0.44
49 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCAATATGAGGCCGATG
Found at i:83992868 original size:18 final size:18
Alignment explanation
Indices: 83992845--83992880 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
83992835 TTCCCGGGTG
83992845 GTAGTCGATTATCAACTC
1 GTAGTCGATTATCAACTC
**
83992863 GTAGTCTTTTATCAACTC
1 GTAGTCGATTATCAACTC
83992881 CAACCGTCTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (18 bp):
GTAGTCGATTATCAACTC
Found at i:83997070 original size:40 final size:40
Alignment explanation
Indices: 83997010--83997193 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
83997000 TATTCGAATG
*
83997010 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
83997050 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * *
83997090 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
83997130 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
83997170 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
83997194 CTTGTGCGAG
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 120 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:83997143 original size:80 final size:80
Alignment explanation
Indices: 83997010--83997229 Score: 279
Period size: 80 Copynumber: 2.8 Consensus size: 80
83997000 TATTCGAATG
* * * *
83997010 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGC
* *
83997074 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
*
83997090 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAG-TCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGC
*
83997154 ATTTATGCTAGTGACC
65 ATTTATGCGAGTGACC
* * *
83997170 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAG
83997230 ATACTTGGGT
Statistics
Matches: 124, Mismatches: 13, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
78 14 0.11
79 20 0.16
80 90 0.73
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:84005476 original size:40 final size:40
Alignment explanation
Indices: 84005432--84005695 Score: 342
Period size: 40 Copynumber: 6.7 Consensus size: 40
84005422 GCTCCTCGTT
* * * *
84005432 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGTA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
84005472 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
84005512 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
84005552 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
84005592 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * *
84005631 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TTAGTAAC-TCGCA
*
84005672 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
84005696 CAGCATTCAA
Statistics
Matches: 205, Mismatches: 13, Indels: 13
0.89 0.06 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 145 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:84006791 original size:13 final size:13
Alignment explanation
Indices: 84006773--84006799 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
84006763 AGGATGAGCA
84006773 TTTTTTTTCTTTC
1 TTTTTTTTCTTTC
84006786 TTTTTTTTCTTTC
1 TTTTTTTTCTTTC
84006799 T
1 T
84006800 AGTTTCGGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTTTTCTTTC
Found at i:84013502 original size:40 final size:40
Alignment explanation
Indices: 84013458--84013721 Score: 342
Period size: 40 Copynumber: 6.7 Consensus size: 40
84013448 GCTCCTCGTT
* * * *
84013458 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGTA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
84013498 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
84013538 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
84013578 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
84013618 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * *
84013657 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TTAGTAAC-TCGCA
*
84013698 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
84013722 CAGCATTCAA
Statistics
Matches: 205, Mismatches: 13, Indels: 13
0.89 0.06 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 145 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:84014818 original size:14 final size:14
Alignment explanation
Indices: 84014799--84014826 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
84014789 AGGATGAGCA
84014799 TTTTTTTTCTTTCT
1 TTTTTTTTCTTTCT
84014813 TTTTTTTTCTTTCT
1 TTTTTTTTCTTTCT
84014827 AGTTTCGGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (14 bp):
TTTTTTTTCTTTCT
Found at i:84020592 original size:20 final size:21
Alignment explanation
Indices: 84020567--84020606 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
84020557 CCCTTGAAAT
84020567 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
84020587 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
84020607 TCATTATAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.20, C:0.30, G:0.40, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:84021955 original size:47 final size:46
Alignment explanation
Indices: 84021743--84021966 Score: 186
Period size: 47 Copynumber: 4.8 Consensus size: 46
84021733 CATAAGGTGT
* * * *
84021743 AATGCCGATGCCATGTCCCAGACATGGTCTTTCACTGGCTCATCCATC
1 AATGTCGATGCCATGTCCCAGACATGGTCTTACACTGTCACAT-C-TC
* *
84021791 AA-GTCGATGCCATGTCCCATACATGGTCTTACACTAGCTCTCACATATC
1 AATGTCGATGCCATGTCCCAGACATGGTCTTACACT-G---TCACATCTC
* * * *
84021840 CATGTCGATACCATGTCCTAGACATGGTCTTACACTGACACATCTC
1 AATGTCGATGCCATGTCCCAGACATGGTCTTACACTGTCACATCTC
* * * *
84021886 -GTAGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGTTCTCGTCTC
1 AAT-GTCGATGCCATGTCCCAGACATGGTCTTACACT-G-TCACATCTC
* * *
84021932 AATGTTGATGCCATGTCCTAGACATGGCCTTACAC
1 AATGTCGATGCCATGTCCCAGACATGGTCTTACAC
84021967 CGACTCTCAT
Statistics
Matches: 141, Mismatches: 24, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
44 10 0.07
45 15 0.11
46 23 0.16
47 44 0.31
48 11 0.08
49 4 0.03
50 30 0.21
51 4 0.03
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (46 bp):
AATGTCGATGCCATGTCCCAGACATGGTCTTACACTGTCACATCTC
Found at i:84022001 original size:94 final size:92
Alignment explanation
Indices: 84021795--84022015 Score: 237
Period size: 94 Copynumber: 2.3 Consensus size: 92
84021785 TCCATCAAGT
* * * * * *
84021795 CGATGCCATGTCCCATACATGGTCTTACACTAGCTCTCACATATCCATGTCGATACCATGTCCTA
1 CGATG-CATCTCCCAGACAT-GTCTTACACTAG-T-TCTCGTCTCAATGTCGATACCATGTCCTA
* *
84021860 GACATGGTCTTACACTGACACATCTCGTAGC
62 GACATGGCCTTACACCGACACATCTCGTAGC
* * *
84021891 CGATGCATGTCCCAGACATGTCTTACACTAGTTCTCGTCTCAATGTTGATGCCATGTCCTAGACA
1 CGATGCATCTCCCAGACATGTCTTACACTAGTTCTCGTCTCAATGTCGATACCATGTCCTAGACA
* * *
84021956 TGGCCTTACACCGACTC-TCATAATGTGGC
66 TGGCCTTACACCGACACATC-T--CGTAGC
*
84021985 CGATGCATCTCTCAGACATGTCTTACACTAG
1 CGATGCATCTCCCAGACATGTCTTACACTAG
84022016 CGCACAAATG
Statistics
Matches: 108, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
91 2 0.02
92 42 0.39
93 1 0.01
94 45 0.42
95 13 0.12
96 5 0.05
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (92 bp):
CGATGCATCTCCCAGACATGTCTTACACTAGTTCTCGTCTCAATGTCGATACCATGTCCTAGACA
TGGCCTTACACCGACACATCTCGTAGC
Found at i:84024128 original size:20 final size:20
Alignment explanation
Indices: 84024103--84024143 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
84024093 ATCTTCCGTT
84024103 GAACCATTTAGAATACTACA
1 GAACCATTTAGAATACTACA
84024123 GAACCATTTAGAATACTACA
1 GAACCATTTAGAATACTACA
84024143 G
1 G
84024144 GATATTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.20, G:0.12, T:0.24
Consensus pattern (20 bp):
GAACCATTTAGAATACTACA
Found at i:84024327 original size:49 final size:49
Alignment explanation
Indices: 84024186--84024354 Score: 196
Period size: 49 Copynumber: 3.4 Consensus size: 49
84024176 GTTGACGCTA
* *
84024186 TGTCCCAGACAGGCCTTACACTGACTTTCATATATCGAGGCCGATACTG
1 TGTCCCAGACAGGCCTTACACTGACTTTCATATATCGAGGTCGATGCTG
* *
84024235 TGTCCCAGATAGGCCTTACACTGACTTTCATATATCGAGGTCGATGTTG
1 TGTCCCAGACAGGCCTTACACTGACTTTCATATATCGAGGTCGATGCTG
* * * * * **
84024284 TGTCCCAAACAGGTCTTACACTGGCTCTCATCTATCG-GTGTCGATGCCA
1 TGTCCCAGACAGGCCTTACACTGACTTTCATATATCGAG-GTCGATGCTG
* * *
84024333 TGTCCTAGATAGGTCTTACACT
1 TGTCCCAGACAGGCCTTACACT
84024355 AGCTTGTATA
Statistics
Matches: 103, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
48 1 0.01
49 102 0.99
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (49 bp):
TGTCCCAGACAGGCCTTACACTGACTTTCATATATCGAGGTCGATGCTG
Found at i:84024433 original size:46 final size:46
Alignment explanation
Indices: 84024325--84024777 Score: 321
Period size: 46 Copynumber: 9.7 Consensus size: 46
84024315 CTATCGGTGT
* * * * *
84024325 CGATGCCATGTCCTAGATAGGTCTTACACTAGCTTGTATATCTCGAA-AC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTT-T-CATCTC-AAGGC
* *
84024374 CGATGCATGTCCCAGACATGTCTTACACTAGCTTTCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTTCATCTCAAGGC
* *
84024420 CGATGCATGTCCCAGACATGTCTTACACTAG-TTGGTATATCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTT--T-CATCTCAAGGC
* * * * * * *
84024468 CGATACATGTCCTAGACATGTCTTACACTGGCTCTTAATAT-ATGGA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-TTCATCTCAAGGC
* * * * * * *
84024514 CGGTGCATGTCCTAGACAGGTCTTACACT-G-ATACA-CAACAA-GT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTTCATC-TCAAGGC
* * * *
84024557 TGACGCCATGTCCCAGACAAGTCTTACACTAGCTTGTATATCTCAAGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTT-T-CATCTCAAGGC
* * * * *
84024606 CGATGCATGTCCCAGACATGTCTTACACTACCTCTCGTCTCAAAGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTTCATCTCAAGGC
* *
84024652 CGATGCATGTCCCAGACATGTCTTACACTGGCTAGTAT-ATCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT--T-TCATCTCAAGGC
* * * * * ** *
84024700 CTATGCACGTCCCAGACATGTCTTACACTGGCTCTCAATAT-GTGGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTTC-ATCTCAAGGC
84024746 CGATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
84024778 ACACATATCA
Statistics
Matches: 321, Mismatches: 63, Indels: 43
0.75 0.15 0.10
Matches are distributed among these distances:
43 5 0.02
44 23 0.07
45 7 0.02
46 135 0.42
47 9 0.03
48 129 0.40
49 12 0.04
50 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTTCATCTCAAGGC
Found at i:84024448 original size:94 final size:95
Alignment explanation
Indices: 84024325--84024777 Score: 339
Period size: 94 Copynumber: 4.8 Consensus size: 95
84024315 CTATCGGTGT
* * * *
84024325 CGATGCCATGTCCTAGATAGGTCTTACACTAGCTTGTATATCTCGAAACCGATGCATGTCCCAGA
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAAATCGATGCATGTCCCAGA
* *
84024390 CATGTCTTACACTAGCT-T-TCGTCTCAATGC
65 CATGTCTTACACTAGCTATAT-ATCTCAAGGC
*** * *
84024420 CGATGCATGTCCCAGACATGTCTTACACTAG-TTGGTATATCTCGAGGCCGATACATGTCCTAGA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTT-GTATATCTCGAAATCGATGCATGTCCCAGA
* * * * *
84024484 CATGTCTTACACTGGCTCT-TAATAT-ATGGA
65 CATGTCTTACACTAGCTATAT-ATCTCAAGGC
* * * * * * *
84024514 CGGTGCATGTCCTAGACAGGTCTT--AC-A-C-TG-ATA-CACAACAAGTTGACGCCATGTCCCA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGA-AA-TCGATG-CATGTCCCA
* *
84024572 GACAAGTCTTACACTAGCTTGTATATCTCAAGGC
63 GACATGTCTTACACTAGC-TATATATCTCAAGGC
* * **
84024606 CGATGCATGTCCCAGACATGTCTTACACTA-CCTCT-CGTCTC-AAAGTCGATGCATGTCCCAGA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAAA-TCGATGCATGTCCCAGA
* *
84024668 CATGTCTTACACTGGCTAGTATATCTCGAGGC
65 CATGTCTTACACTAGCTA-TATATCTCAAGGC
* * * ** * *
84024700 CTATGCACGTCCCAGACATGTCTTACACTGGCTCTCAATATGT-G--GTCGATGCATGTCCCAGA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-TGTATATCTCGAAATCGATGCATGTCCCAGA
84024762 CATGTCTTACACTAGC
65 CATGTCTTACACTAGC
84024778 ACACATATCA
Statistics
Matches: 283, Mismatches: 55, Indels: 41
0.75 0.15 0.11
Matches are distributed among these distances:
87 3 0.01
88 3 0.01
89 3 0.01
90 25 0.09
91 6 0.02
92 27 0.10
93 3 0.01
94 186 0.66
95 19 0.07
96 4 0.01
97 4 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.28
Consensus pattern (95 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAAATCGATGCATGTCCCAGAC
ATGTCTTACACTAGCTATATATCTCAAGGC
Found at i:84024600 original size:232 final size:232
Alignment explanation
Indices: 84024329--84024774 Score: 687
Period size: 232 Copynumber: 1.9 Consensus size: 232
84024319 CGGTGTCGAT
* * *
84024329 GCCATGTCCTAGATAGGTCTTACACTAGCTTGTATATCTCGAA-ACCGATGCATGTCCCAGACAT
1 GCCATGTCCCAGACAAGTCTTACACTAGCTTGTATATCTC-AAGACCGATGCATGTCCCAGACAT
* * * * *
84024393 GTCTTACACTAGCTTTCGTCTCAATGCCGATGCATGTCCCAGACATGTCTTACACTAGTTGGTAT
65 GTCTTACACTACCTCTCGTCTCAAAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTAGTAT
* * * *
84024458 ATCTCGAGGCCGATACATGTCCTAGACATGTCTTACACTGGCTCTTAATATATGGACGGTGCATG
130 ATCTCGAGGCCGATACACGTCCCAGACATGTCTTACACTGGCTCTCAATATATGGACGATGCATG
*
84024523 TCCTAGACAGGTCTTACACTGATACACAACAAGTTGAC
195 TCCCAGACAGGTCTTACACTGATACACAACAAGTTGAC
*
84024561 GCCATGTCCCAGACAAGTCTTACACTAGCTTGTATATCTCAAGGCCGATGCATGTCCCAGACATG
1 GCCATGTCCCAGACAAGTCTTACACTAGCTTGTATATCTCAAGACCGATGCATGTCCCAGACATG
* *
84024626 TCTTACACTACCTCTCGTCTCAAAGTCGATGCATGTCCCAGACATGTCTTACACTGGCTAGTATA
66 TCTTACACTACCTCTCGTCTCAAAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTAGTATA
* * * *
84024691 TCTCGAGGCCTATGCACGTCCCAGACATGTCTTACACTGGCTCTCAATATGTGGTCGATGCATGT
131 TCTCGAGGCCGATACACGTCCCAGACATGTCTTACACTGGCTCTCAATATATGGACGATGCATGT
*
84024756 CCCAGACATGTCTTACACT
196 CCCAGACAGGTCTTACACT
84024775 AGCACACATA
Statistics
Matches: 192, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
231 2 0.01
232 190 0.99
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (232 bp):
GCCATGTCCCAGACAAGTCTTACACTAGCTTGTATATCTCAAGACCGATGCATGTCCCAGACATG
TCTTACACTACCTCTCGTCTCAAAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTAGTATA
TCTCGAGGCCGATACACGTCCCAGACATGTCTTACACTGGCTCTCAATATATGGACGATGCATGT
CCCAGACAGGTCTTACACTGATACACAACAAGTTGAC
Found at i:84026676 original size:17 final size:18
Alignment explanation
Indices: 84026654--84026688 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
84026644 AATCTGGGCT
84026654 TGTGGG-CCACACAGGCA
1 TGTGGGCCCACACAGGCA
84026671 TGTGGGCCCACACAGGCA
1 TGTGGGCCCACACAGGCA
84026689 AACTATATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.23, C:0.31, G:0.34, T:0.11
Consensus pattern (18 bp):
TGTGGGCCCACACAGGCA
Found at i:84028668 original size:11 final size:11
Alignment explanation
Indices: 84028652--84028703 Score: 50
Period size: 11 Copynumber: 4.4 Consensus size: 11
84028642 ATAGTATTTT
84028652 TATTAATTTAA
1 TATTAATTTAA
**
84028663 TATTAAAGTAA
1 TATTAATTTAA
84028674 TTATCTTAATATTAA
1 -TA--TTAAT-TTAA
84028689 TATTAATTTAA
1 TATTAATTTAA
84028700 TATT
1 TATT
84028704 TATCTTATAG
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
11 17 0.52
12 7 0.21
14 6 0.18
15 3 0.09
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (11 bp):
TATTAATTTAA
Found at i:84031207 original size:17 final size:18
Alignment explanation
Indices: 84031185--84031230 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 18
84031175 TATCAAGATA
84031185 AATATTAGACTAA-A-TTT
1 AATATTAGAC-AACACTTT
84031202 AATATTAAGACAATCACTTT
1 AATATT-AGACAA-CACTTT
84031222 AATATTAGA
1 AATATTAGA
84031231 TTTATTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 8 0.32
18 4 0.16
19 4 0.16
20 9 0.36
ACGTcount: A:0.48, C:0.09, G:0.07, T:0.37
Consensus pattern (18 bp):
AATATTAGACAACACTTT
Found at i:84033313 original size:44 final size:42
Alignment explanation
Indices: 84033255--84033342 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 42
84033245 AACTCATAGA
*
84033255 CGATGCCAATGTCCCAGACATGGTCGTAAACGTAAATCACAAAT
1 CGATGCCAACGTCCCAGACATGGTCGTAAACG--AATCACAAAT
* * * *
84033299 CGATGTCAACGTCCCAGACGTGGTCTTAAACGAATCACATAT
1 CGATGCCAACGTCCCAGACATGGTCGTAAACGAATCACAAAT
84033341 CG
1 CG
84033343 GAATCTTATG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 11 0.28
44 28 0.72
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (42 bp):
CGATGCCAACGTCCCAGACATGGTCGTAAACGAATCACAAAT
Found at i:84034464 original size:13 final size:13
Alignment explanation
Indices: 84034446--84034470 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
84034436 TCAAACGATA
84034446 AAATTTTCACACG
1 AAATTTTCACACG
84034459 AAATTTTCACAC
1 AAATTTTCACAC
84034471 ATATAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:84035191 original size:12 final size:13
Alignment explanation
Indices: 84035174--84035207 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
84035164 GCAGAATCAT
84035174 AATCAAAACCAA-
1 AATCAAAACCAAC
84035186 AATCAAAACCAAC
1 AATCAAAACCAAC
84035199 AA-CAAAACC
1 AATCAAAACC
84035208 CAAAGAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 19 0.90
13 2 0.10
ACGTcount: A:0.65, C:0.29, G:0.00, T:0.06
Consensus pattern (13 bp):
AATCAAAACCAAC
Found at i:84051411 original size:17 final size:16
Alignment explanation
Indices: 84051389--84051426 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
84051379 TCTTTTTAAC
84051389 AAAATTTAACTGAAATT
1 AAAATTTAACT-AAATT
84051406 AAAATTTAACTAAATT
1 AAAATTTAACTAAATT
*
84051422 TAAAT
1 AAAAT
84051427 CAATTACTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.37
Consensus pattern (16 bp):
AAAATTTAACTAAATT
Found at i:84063550 original size:39 final size:39
Alignment explanation
Indices: 84063496--84063575 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
84063486 ACAAGGGGAA
*
84063496 ACAAAGATTTTTGAGATTTAGAGTCAAAGTTGATGGTTG
1 ACAAAGATTTTTGAGATATAGAGTCAAAGTTGATGGTTG
84063535 ACAAAGATTTTTGAGATATAGAGTCAAAGTTGATGGTTG
1 ACAAAGATTTTTGAGATATAGAGTCAAAGTTGATGGTTG
84063574 AC
1 AC
84063576 TTGCTTTGAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.35, C:0.06, G:0.25, T:0.34
Consensus pattern (39 bp):
ACAAAGATTTTTGAGATATAGAGTCAAAGTTGATGGTTG
Found at i:84065313 original size:21 final size:21
Alignment explanation
Indices: 84065289--84065333 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
84065279 AGAATTTATT
*
84065289 CACAGCATCAAATACGAAGAA
1 CACAACATCAAATACGAAGAA
84065310 CACAACATCAAATACGAAGAA
1 CACAACATCAAATACGAAGAA
84065331 CAC
1 CAC
84065334 TGATAGAGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.53, C:0.27, G:0.11, T:0.09
Consensus pattern (21 bp):
CACAACATCAAATACGAAGAA
Found at i:84067801 original size:14 final size:15
Alignment explanation
Indices: 84067777--84067806 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
84067767 GGATATCAAA
84067777 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
84067792 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
84067806 A
1 A
84067807 AGTTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:84069477 original size:13 final size:13
Alignment explanation
Indices: 84069459--84069483 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
84069449 ATGGAAACAT
84069459 CAGTGAACCACGG
1 CAGTGAACCACGG
84069472 CAGTGAACCACG
1 CAGTGAACCACG
84069484 CGGCACATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.32, G:0.28, T:0.08
Consensus pattern (13 bp):
CAGTGAACCACGG
Found at i:84077257 original size:15 final size:17
Alignment explanation
Indices: 84077227--84077259 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
84077217 GAAAACATCT
84077227 CAAAAGCATAAAGAAAA
1 CAAAAGCATAAAGAAAA
84077244 CAAAA-CAT-AAGAAAA
1 CAAAAGCATAAAGAAAA
84077259 C
1 C
84077260 CCAAAACTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 3 0.19
17 5 0.31
ACGTcount: A:0.70, C:0.15, G:0.09, T:0.06
Consensus pattern (17 bp):
CAAAAGCATAAAGAAAA
Found at i:84094652 original size:18 final size:18
Alignment explanation
Indices: 84094604--84094660 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
84094594 GCTAAGAGAG
*
84094604 TTGAGGGAGGAGAGAATGA
1 TTGAGGGATGAG-GAATGA
**
84094623 -TGAATGAGTGAGGAATGA
1 TTGAGGGA-TGAGGAATGA
*
84094641 TTGAGGGATGAGGGATGA
1 TTGAGGGATGAGGAATGA
84094659 TT
1 TT
84094661 AGAAAAGTGA
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
18 22 0.73
19 8 0.27
ACGTcount: A:0.33, C:0.00, G:0.44, T:0.23
Consensus pattern (18 bp):
TTGAGGGATGAGGAATGA
Found at i:84103172 original size:17 final size:18
Alignment explanation
Indices: 84103140--84103173 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
84103130 TTTGAGTAAT
84103140 TAAGAATATCTTTAAAAC
1 TAAGAATATCTTTAAAAC
*
84103158 TAAGGATAT-TTTAAAA
1 TAAGAATATCTTTAAAA
84103174 GACATTAGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.50, C:0.06, G:0.09, T:0.35
Consensus pattern (18 bp):
TAAGAATATCTTTAAAAC
Found at i:84104038 original size:29 final size:30
Alignment explanation
Indices: 84103979--84104038 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
84103969 ATTGAGCATG
**
84103979 AGAGAATAGATAAAATCAAAACTCCGGTTA
1 AGAGAATAGATAAAATCAAAACTCCAATTA
84104009 AGAGAA-AGATAAAATCAAAACTCCAATTA
1 AGAGAATAGATAAAATCAAAACTCCAATTA
84104038 A
1 A
84104039 AAGAGAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 22 0.79
30 6 0.21
ACGTcount: A:0.55, C:0.13, G:0.13, T:0.18
Consensus pattern (30 bp):
AGAGAATAGATAAAATCAAAACTCCAATTA
Found at i:84106242 original size:19 final size:19
Alignment explanation
Indices: 84106218--84106255 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
84106208 CCATATCATA
84106218 GGACATACACACAAAATGG
1 GGACATACACACAAAATGG
84106237 GGACATACACACAAAATGG
1 GGACATACACACAAAATGG
84106256 CTAAGTCCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.21, G:0.21, T:0.11
Consensus pattern (19 bp):
GGACATACACACAAAATGG
Found at i:84106962 original size:47 final size:47
Alignment explanation
Indices: 84106910--84107031 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
84106900 CATGCCTTGG
* * *
84106910 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCTTGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
84106957 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
84107004 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
84107032 TTGCCAATGC
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:84112481 original size:20 final size:20
Alignment explanation
Indices: 84112439--84112481 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
84112429 AGATTTATGG
**
84112439 TATGATATGATAAGTATTGT
1 TATGATATGATAAACATTGT
* *
84112459 TATGATTTGATAAACATTTT
1 TATGATATGATAAACATTGT
84112479 TAT
1 TAT
84112482 AATCTCATGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.35, C:0.02, G:0.14, T:0.49
Consensus pattern (20 bp):
TATGATATGATAAACATTGT
Found at i:84115156 original size:25 final size:26
Alignment explanation
Indices: 84115089--84115160 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
84115079 TCCCATTCAT
*
84115089 ATTTTACCCCTAGCAAAATTTTGACG
1 ATTTTACCCCTAGTAAAATTTTGACG
* *
84115115 ATTTTACCCCTGGTAAACTTTTGACG
1 ATTTTACCCCTAGTAAAATTTTGACG
*
84115141 ATTTT-TCCCTAGTAAAATTT
1 ATTTTACCCCTAGTAAAATTT
84115161 CGAGAAAATA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
25 12 0.30
26 28 0.70
ACGTcount: A:0.28, C:0.21, G:0.11, T:0.40
Consensus pattern (26 bp):
ATTTTACCCCTAGTAAAATTTTGACG
Found at i:84115324 original size:6 final size:6
Alignment explanation
Indices: 84115310--84115343 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
84115300 CAAATGAATT
*
84115310 ATTTTC ATTTCC ATTTCC ATTTCC ATTTCC ATTT
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTT
84115344 TTAGAAACCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.18, C:0.26, G:0.00, T:0.56
Consensus pattern (6 bp):
ATTTCC
Found at i:84130432 original size:46 final size:45
Alignment explanation
Indices: 84130267--84130439 Score: 154
Period size: 46 Copynumber: 3.8 Consensus size: 45
84130257 GTAACCCGCC
* * ** *
84130267 CCTAAGTGAAATCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCTAAGTGAACTCAGACTCAACTCAACGAGTTCGAACATTCGCAT
* * * *
84130312 CCATAAATGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT
1 CC-TAAGTGAACTCAGACTCAACTCAACGAGTTC-GA--AC-A-TTCGCAT
* *
84130362 -CTCA-CGAACTCAGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCTAAGTGAACTCAGACTCAACTCAACGAGTTCGAACATTCGCAT
*
84130405 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CC-TAAGTGAACTCAGACTCAACTCAACGAGTTCG
84130440 GATGCTCAAC
Statistics
Matches: 102, Mismatches: 16, Indels: 19
0.74 0.12 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 55 0.54
47 26 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.21
Consensus pattern (45 bp):
CCTAAGTGAACTCAGACTCAACTCAACGAGTTCGAACATTCGCAT
Found at i:84149514 original size:13 final size:13
Alignment explanation
Indices: 84149496--84149520 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
84149486 GTGTTTGGGC
84149496 CCACACGGGCATT
1 CCACACGGGCATT
84149509 CCACACGGGCAT
1 CCACACGGGCAT
84149521 GTGTGTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.40, G:0.24, T:0.12
Consensus pattern (13 bp):
CCACACGGGCATT
Found at i:84153133 original size:19 final size:19
Alignment explanation
Indices: 84153096--84153131 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
84153086 ATATGTGATG
*
84153096 TTAATAAATAATTTAAAAT
1 TTAAAAAATAATTTAAAAT
84153115 TTAAAAAAT-ATTTAAAA
1 TTAAAAAATAATTTAAAA
84153132 ATAAGAGCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
TTAAAAAATAATTTAAAAT
Found at i:84154481 original size:154 final size:154
Alignment explanation
Indices: 84154196--84154491 Score: 466
Period size: 154 Copynumber: 1.9 Consensus size: 154
84154186 GGAGACTAAA
* * * ** *
84154196 GTATATTGCTTAAGGGAGTAAAAGTGGGAATAAGATCCCTTTTGTATTGTATGTTAGGTATATAT
1 GTATATTGCTAAAGGGAGTAAAAGTGGGAAGAAAATCAATTTTGTATTGTATGTTAGGTATACAT
* * *
84154261 AGGGAGAAAGTCTCCTTGCTTGTAATGTCACGTCATCAACAACACGAGTGGTGGCCTGCTCGTGT
66 AGGGAGAAAGTCTCCTTGCTTGTAATGTCACGTCATCAACAACACGAGCGATGGCCTGCTCATGT
*
84154326 GGTCAGTCAAGTAGCAAGTCTAGG
131 GGCCAGTCAAGTAGCAAGTCTAGG
*
84154350 GTATATTGCTAAAGGGAGTAAAAGTGGGAAGAAAATCAATTTTGTATTGTATGTTGGGTATACAT
1 GTATATTGCTAAAGGGAGTAAAAGTGGGAAGAAAATCAATTTTGTATTGTATGTTAGGTATACAT
* * *
84154415 AGGGAGAAGGTCTCCTTGCTTGTAATGTTACGTCATCAACAGCACGAGCGATGGCCTGCTCATGT
66 AGGGAGAAAGTCTCCTTGCTTGTAATGTCACGTCATCAACAACACGAGCGATGGCCTGCTCATGT
84154480 GGCCAGTCAAGT
131 GGCCAGTCAAGT
84154492 GGCAGGCCTG
Statistics
Matches: 128, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
154 128 1.00
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (154 bp):
GTATATTGCTAAAGGGAGTAAAAGTGGGAAGAAAATCAATTTTGTATTGTATGTTAGGTATACAT
AGGGAGAAAGTCTCCTTGCTTGTAATGTCACGTCATCAACAACACGAGCGATGGCCTGCTCATGT
GGCCAGTCAAGTAGCAAGTCTAGG
Found at i:84156216 original size:22 final size:24
Alignment explanation
Indices: 84156188--84156236 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
84156178 GAGTCATTTA
*
84156188 AAAAGTAAAG-ATTCAAT-CAAAC
1 AAAAGTAAAGAATTAAATCCAAAC
*
84156210 AAAAGTAATGAATTAAATCCAAAC
1 AAAAGTAAAGAATTAAATCCAAAC
84156234 AAA
1 AAA
84156237 TTGATAAGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 9 0.39
23 6 0.26
24 8 0.35
ACGTcount: A:0.61, C:0.12, G:0.08, T:0.18
Consensus pattern (24 bp):
AAAAGTAAAGAATTAAATCCAAAC
Found at i:84160346 original size:40 final size:40
Alignment explanation
Indices: 84160291--84160372 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
84160281 CAATGCTTGC
*
84160291 TTTGTGGGATGAATTATTAAAGGTTGCATCGCAGCTGAGT
1 TTTGTGGGATGAATTATTAAAGGTTGCACCGCAGCTGAGT
84160331 TTTGTGGGATGAATTATTAAAGGTTGCACCGCAGCTGAGT
1 TTTGTGGGATGAATTATTAAAGGTTGCACCGCAGCTGAGT
84160371 TT
1 TT
84160373 CAGTGATCTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.24, C:0.11, G:0.29, T:0.35
Consensus pattern (40 bp):
TTTGTGGGATGAATTATTAAAGGTTGCACCGCAGCTGAGT
Found at i:84163088 original size:20 final size:20
Alignment explanation
Indices: 84163063--84163106 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
84163053 ATCCATTTGC
84163063 AAACAATAGCTCATCCATAT
1 AAACAATAGCTCATCCATAT
**
84163083 AAACAATATTTCATCCATAT
1 AAACAATAGCTCATCCATAT
84163103 AAAC
1 AAAC
84163107 TGTAACAGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.48, C:0.23, G:0.02, T:0.27
Consensus pattern (20 bp):
AAACAATAGCTCATCCATAT
Found at i:84167669 original size:40 final size:40
Alignment explanation
Indices: 84167591--84167813 Score: 265
Period size: 40 Copynumber: 5.5 Consensus size: 40
84167581 ACCCAAGTAT
* * *
84167591 CTTCGAGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
84167630 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
84167670 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
84167710 CTTC-GAACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * * *
84167752 CTTCGAGACTTAGCCCAGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
84167792 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
84167814 CATTCGAATA
Statistics
Matches: 157, Mismatches: 19, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
38 1 0.01
39 31 0.20
40 92 0.59
41 1 0.01
42 14 0.09
43 18 0.11
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:84167773 original size:82 final size:80
Alignment explanation
Indices: 84167591--84167813 Score: 274
Period size: 82 Copynumber: 2.8 Consensus size: 80
84167581 ACCCAAGTAT
* * *
84167591 CTTCGAGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGAGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
**
84167654 TCACTAGCATGAATGC
65 TCACTAGCACAAATGC
* * *
84167670 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC-GAACTTAGCCCGGGTATAG-
1 CTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
84167733 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
* * *
84167752 CTTCGAGACTTAGCCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
84167814 CATTCGAATA
Statistics
Matches: 123, Mismatches: 14, Indels: 10
0.84 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 31 0.25
80 27 0.22
81 1 0.01
82 48 0.39
83 15 0.12
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:84170314 original size:46 final size:45
Alignment explanation
Indices: 84170247--84170417 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 45
84170237 ACCCGCCCAT
84170247 AAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCAC
1 AAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATT-GCATCCAC
* * *
84170293 AAGTGAACTCAGACTCAACTCAACGAGCTCGGATGGCTAGTTACAT-CTC
1 AAGTGAACTCGGACTCAACTCAACGAGCTC-G--GGC-A-TTGCATCCAC
* *
84170342 ---TCGAACTCGGACTCAACTCAACGAG-TCCGGACATTTGCATCCAT
1 AAGT-GAACTCGGACTCAACTCAACGAGCT-CGGGCA-TTGCATCCAC
*
84170386 AAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 AAGTGAACTCGGACTCAACTCAACGAGCTCGG
84170418 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 9, Indels: 24
0.76 0.07 0.18
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
46 58 0.56
47 26 0.25
49 5 0.05
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.20
Consensus pattern (45 bp):
AAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTGCATCCAC
Found at i:84170410 original size:93 final size:93
Alignment explanation
Indices: 84170251--84170420 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
84170241 GCCCATAAGT
*
84170251 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCACAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCAGACTCAACTCAA
84170316 CGAGCTCGGATGGCTAGTTACATCTCTC
66 CGAGCTCGGATGGCTAGTTACATCTCTC
* * *
84170344 GAACTCGGACTCAACTCAACGAG-TCCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCT-CGGACATTCGCATCCACAAGTGAACTCAGACTCAACTCA
*
84170408 ACGAGTTCGGATG
65 ACGAGCTCGGATG
84170421 CTCAACCATC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGGCTAGTTACATCTCTC
Found at i:84172844 original size:30 final size:30
Alignment explanation
Indices: 84172800--84172868 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
84172790 CAAAGATAAC
*
84172800 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
* * *
84172829 GAGAAACCCAGAATAAAGAGATCCAGGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
84172859 AAGAAACCCA
1 AAGAAACCCA
84172869 AGATATGATA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 7 0.21
30 27 0.79
ACGTcount: A:0.57, C:0.17, G:0.17, T:0.09
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATA
Found at i:84172873 original size:15 final size:15
Alignment explanation
Indices: 84172811--84172873 Score: 65
Period size: 15 Copynumber: 4.2 Consensus size: 15
84172801 AGAAAACCGA
*
84172811 ATAAAGAAATCCAAG
1 ATAAAGAAACCCAAG
*
84172826 ATAGAGAAACCC-AG
1 ATAAAGAAACCCAAG
* * *
84172840 AATAAAGAGATCCAGG
1 -ATAAAGAAACCCAAG
84172856 ATAAAGAAACCCAAG
1 ATAAAGAAACCCAAG
84172871 ATA
1 ATA
84172874 TGATACTATG
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
14 2 0.05
15 34 0.92
16 1 0.03
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.11
Consensus pattern (15 bp):
ATAAAGAAACCCAAG
Found at i:84175866 original size:46 final size:45
Alignment explanation
Indices: 84175799--84175969 Score: 154
Period size: 46 Copynumber: 3.7 Consensus size: 45
84175789 ACCCGCCCAT
* *
84175799 AAGTGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCAC
1 AAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTT-GCATCCAC
* *
84175845 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGGCTAGTTACAT-CTC
1 AAGTGAACTCGGACTCAACTCAACGAGCTC-G--GGC--GTTGCATCCAC
* * *
84175894 ---TCGAACTCGGACTCAACTCAACGAG-TCCGGACATTTGCATCCAT
1 AAGT-GAACTCGGACTCAACTCAACGAGCT-CGGGC-GTTGCATCCAC
*
84175938 AAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 AAGTGAACTCGGACTCAACTCAACGAGCTCGG
84175970 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 9, Indels: 24
0.76 0.07 0.18
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
46 57 0.55
47 27 0.26
49 5 0.05
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (45 bp):
AAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTGCATCCAC
Found at i:84175962 original size:93 final size:93
Alignment explanation
Indices: 84175803--84175972 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
84175793 GCCCATAAGT
* * *
84175803 GAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCACAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
84175868 CGAGCTCGGATGGCTAGTTACATCTCTC
66 CGAGCTCGGATGGCTAGTTACATCTCTC
* * *
84175896 GAACTCGGACTCAACTCAACGAG-TCCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCT-CGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
*
84175960 ACGAGTTCGGATG
65 ACGAGCTCGGATG
84175973 CTCAACCATC
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
92 1 0.01
93 68 0.99
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGGCTAGTTACATCTCTC
Found at i:84175989 original size:46 final size:46
Alignment explanation
Indices: 84175846--84175989 Score: 113
Period size: 46 Copynumber: 3.1 Consensus size: 46
84175836 CGCATCCACA
*
84175846 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGGCT-AGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGAT-GCTCA---ACCATC-CT
* * * * *
84175895 --CGAACTCGGACTCAACTCAACGAGTCCGGACAT-TTGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCCT
84175939 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
84175985 AGTGA
1 AGTGA
84175990 CATGTCACTT
Statistics
Matches: 74, Mismatches: 11, Indels: 23
0.69 0.10 0.21
Matches are distributed among these distances:
44 8 0.11
45 1 0.01
46 32 0.43
47 30 0.41
49 3 0.04
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:84188415 original size:28 final size:27
Alignment explanation
Indices: 84188358--84188509 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
84188348 TAAATTGTGC
* *
84188358 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
84188385 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
84188413 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
84188440 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
84188468 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
84188495 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
84188510 GACTTAATAA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:84188423 original size:55 final size:55
Alignment explanation
Indices: 84188358--84188509 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
84188348 TAAATTGTGC
* *
84188358 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
84188413 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
84188468 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
84188510 GACTTAATAA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:84196408 original size:28 final size:28
Alignment explanation
Indices: 84196327--84196503 Score: 268
Period size: 28 Copynumber: 6.4 Consensus size: 28
84196317 GAGATTGGCG
*
84196327 CTAAGTGTGCGGGTTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGACTATGTAGCA
* *
84196355 CTAAGTGTGCGA-ATTGAATATGTAGCA
1 CTAAGTGTGCGAGTTTGACTATGTAGCA
84196382 CTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGACTATGTAGCA
84196410 CTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGACTATGTAGCA
* *
84196438 CTAAGTGTGCGAGTATGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGACTATGTAGCA
* *
84196466 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGACTATGTAGCA
*
84196493 CTGAGTGTGCG
1 CTAAGTGTGCG
84196504 GACTTAATAA
Statistics
Matches: 138, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
27 47 0.34
28 91 0.66
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGACTATGTAGCA
Found at i:84196411 original size:55 final size:55
Alignment explanation
Indices: 84196327--84196503 Score: 264
Period size: 55 Copynumber: 3.2 Consensus size: 55
84196317 GAGATTGGCG
*
84196327 CTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGTAGCA
1 CTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGTAGCA
* *
84196382 CTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGA-ATTGAATATGTAGCA
* * * * *
84196438 CTAAGTGTGCGAGTATGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGTAGCA
*
84196493 CTGAGTGTGCG
1 CTAAGTGTGCG
84196504 GACTTAATAA
Statistics
Matches: 112, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
55 61 0.54
56 51 0.46
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (55 bp):
CTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGTAGCA
Found at i:84196492 original size:83 final size:83
Alignment explanation
Indices: 84196327--84196503 Score: 284
Period size: 83 Copynumber: 2.1 Consensus size: 83
84196317 GAGATTGGCG
*
84196327 CTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGC
1 CTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGC
*
84196392 GAGTTTGACTATGTAGCA
66 GAGTTTGACTATATAGCA
* *
84196410 CTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGTAGCACTAAGTGTG
1 CTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAAT-TGAATATGTAGCACTAAGTGTG
*
84196475 CGAG-TTGATTATATAGCA
65 CGAGTTTGACTATATAGCA
*
84196493 CTGAGTGTGCG
1 CTAAGTGTGCG
84196504 GACTTAATAA
Statistics
Matches: 87, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
83 62 0.71
84 25 0.29
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (83 bp):
CTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGC
GAGTTTGACTATATAGCA
Found at i:84204031 original size:48 final size:47
Alignment explanation
Indices: 84203976--84204205 Score: 206
Period size: 48 Copynumber: 4.9 Consensus size: 47
84203966 AGGGTAAATT
* * * *
84203976 GCCGATGCCATGTCCTAGACATGGTCTTACATTGGCTCTCATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-AG
* * *
84204024 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTTTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-AG
* *
84204072 GCCGATACCATGT--CTG----GGTCTTACACTAGCTCTCATAAT-ATG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCA-G
* *
84204114 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCGT-ACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC-TCTCATATC-AG
* * * * *
84204162 GTCGATGTCACGTCTCAGACATGGTCTTACACTGGCTCTCATAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT
84204206 TGTGGCTGAC
Statistics
Matches: 148, Mismatches: 22, Indels: 24
0.76 0.11 0.12
Matches are distributed among these distances:
41 1 0.01
42 31 0.21
43 1 0.01
44 2 0.01
46 2 0.01
47 3 0.02
48 106 0.72
49 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAG
Found at i:84204118 original size:42 final size:41
Alignment explanation
Indices: 84204046--84204127 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 41
84204036 TCCCAGACAT
* *
84204046 GGTCTTACACTAGCTCTCGTTTCAATGCCGATACCATGTCTG
1 GGTCTTACACTAGCTCTCATAT-AATGCCGATACCATGTCTG
*
84204088 GGTCTTACACTAGCTCTCATA-ATATGGCCGATGCCATGTC
1 GGTCTTACACTAGCTCTCATATA-AT-GCCGATACCATGTC
84204128 CCAGACATGG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
40 1 0.03
41 2 0.06
42 32 0.91
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.32
Consensus pattern (41 bp):
GGTCTTACACTAGCTCTCATATAATGCCGATACCATGTCTG
Found at i:84204232 original size:48 final size:48
Alignment explanation
Indices: 84204180--84204289 Score: 211
Period size: 48 Copynumber: 2.3 Consensus size: 48
84204170 CACGTCTCAG
84204180 ACATGGTCTTACACTGGCTCTCATATTGTGGCTGACACCATGTTGCAA
1 ACATGGTCTTACACTGGCTCTCATATTGTGGCTGACACCATGTTGCAA
*
84204228 ACATGGTCCTACACTGGCTCTCATATTGTGGCTGACACCATGTTGCAA
1 ACATGGTCTTACACTGGCTCTCATATTGTGGCTGACACCATGTTGCAA
84204276 ACATGGTCTTACAC
1 ACATGGTCTTACAC
84204290 ATAATAACGA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (48 bp):
ACATGGTCTTACACTGGCTCTCATATTGTGGCTGACACCATGTTGCAA
Found at i:84204931 original size:70 final size:70
Alignment explanation
Indices: 84204818--84204957 Score: 280
Period size: 70 Copynumber: 2.0 Consensus size: 70
84204808 AATAGTCCCC
84204818 CCATTAGTTAGCTTATGCTACAAGGGTCCCAAAAGTACAAAAATTTTCAAGAAAAGTCATCAAAA
1 CCATTAGTTAGCTTATGCTACAAGGGTCCCAAAAGTACAAAAATTTTCAAGAAAAGTCATCAAAA
84204883 TCACT
66 TCACT
84204888 CCATTAGTTAGCTTATGCTACAAGGGTCCCAAAAGTACAAAAATTTTCAAGAAAAGTCATCAAAA
1 CCATTAGTTAGCTTATGCTACAAGGGTCCCAAAAGTACAAAAATTTTCAAGAAAAGTCATCAAAA
84204953 TCACT
66 TCACT
84204958 TACTTATGAG
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.26
Consensus pattern (70 bp):
CCATTAGTTAGCTTATGCTACAAGGGTCCCAAAAGTACAAAAATTTTCAAGAAAAGTCATCAAAA
TCACT
Found at i:84205632 original size:40 final size:40
Alignment explanation
Indices: 84205588--84205694 Score: 169
Period size: 40 Copynumber: 2.7 Consensus size: 40
84205578 GTACATAGTC
*
84205588 GAAGCTATCTCAAATCGCACACTAAGTGCCATATATAGCT
1 GAAGCTATGTCAAATCGCACACTAAGTGCCATATATAGCT
*
84205628 GAAGCTATGTCAAATCACACACTAAGTGCCATATATAGCT
1 GAAGCTATGTCAAATCGCACACTAAGTGCCATATATAGCT
* **
84205668 CAAGCTATGTCGTATCGCACACTAAGT
1 GAAGCTATGTCAAATCGCACACTAAGT
84205695 TTCACAAATA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (40 bp):
GAAGCTATGTCAAATCGCACACTAAGTGCCATATATAGCT
Found at i:84211246 original size:40 final size:40
Alignment explanation
Indices: 84211134--84211264 Score: 138
Period size: 40 Copynumber: 3.3 Consensus size: 40
84211124 TTGATATCTT
* * * * *
84211134 GCACACTAAGTGCCTTACATAGCTGAAGCTATCTCAAATC
1 GCACACTAAGTACCATATATAGCTGAAGCTATGTCGAATC
* * *
84211174 GTACACTAAGTGCCATATACAG-TCGAAGCTATGTCGAATC
1 GCACACTAAGTACCATATATAGCT-GAAGCTATGTCGAATC
* * *
84211214 ACACACTTAGTACCATATATAGCTGAAGCTATGTCGTATC
1 GCACACTAAGTACCATATATAGCTGAAGCTATGTCGAATC
*
84211254 GCACATTAAGT
1 GCACACTAAGT
84211265 GGCACAAATA
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (40 bp):
GCACACTAAGTACCATATATAGCTGAAGCTATGTCGAATC
Found at i:84217426 original size:28 final size:28
Alignment explanation
Indices: 84217364--84217436 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
84217354 TATAAAGGTG
84217364 AATTGGGCCTAGTGGGCCATAAGAATAT
1 AATTGGGCCTAGTGGGCCATAAGAATAT
* **
84217392 AACTGGGCC-AGATGGGCCATTTGAATA-
1 AATTGGGCCTAG-TGGGCCATAAGAATAT
84217419 AGATTGGGCCTAGTGGGC
1 A-ATTGGGCCTAGTGGGC
84217437 TATATGCATG
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
27 3 0.08
28 33 0.87
29 2 0.05
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.23
Consensus pattern (28 bp):
AATTGGGCCTAGTGGGCCATAAGAATAT
Found at i:84228908 original size:16 final size:15
Alignment explanation
Indices: 84228887--84228924 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
84228877 TCTCTTGCAT
*
84228887 TTTAGATTAACATGGA
1 TTTAGATTAAAAT-GA
84228903 TTTAGATTAAAATGA
1 TTTAGATTAAAATGA
84228918 TTT-GATT
1 TTTAGATT
84228925 TCATGTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 4 0.19
15 5 0.24
16 12 0.57
ACGTcount: A:0.37, C:0.03, G:0.16, T:0.45
Consensus pattern (15 bp):
TTTAGATTAAAATGA
Found at i:84231394 original size:5 final size:5
Alignment explanation
Indices: 84231384--84231417 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
84231374 TTTTAATAAC
84231384 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
84231418 TCAAGAGATC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:84233353 original size:28 final size:28
Alignment explanation
Indices: 84233296--84233448 Score: 211
Period size: 28 Copynumber: 5.5 Consensus size: 28
84233286 TAAATTGTGC
** *
84233296 AGCACTAAGTGTGC-AAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
84233323 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
84233351 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
84233379 AGCACTAAGTGTGTGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
* * *
84233407 AGCACTAGGTGTGCGAG-CTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
84233434 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
84233449 GACTTAATAT
Statistics
Matches: 113, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 35 0.31
28 78 0.69
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:84233445 original size:83 final size:83
Alignment explanation
Indices: 84233296--84233448 Score: 218
Period size: 83 Copynumber: 1.8 Consensus size: 83
84233286 TAAATTGTGC
* *
84233296 AGCACTAAGTGTGCAAATTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCAAATTGACTATGTAGCACTAAGTGTGCGAGTCTGATTATATAGCACTAAGT
84233361 GTGCGAGTTTGACTATGT
66 GTGCGAGTTTGACTATGT
* ** * * *
84233379 AGCACTAAGTGTGTGAGTTTGATTATGTAGCACTAGGTGTGCGAG-CTGATTATATAGCACTGAG
1 AGCACTAAGTGTG-CAAATTGACTATGTAGCACTAAGTGTGCGAGTCTGATTATATAGCACTAAG
84233443 TGTGCG
65 TGTGCG
84233449 GACTTAATAT
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
83 35 0.57
84 26 0.43
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (83 bp):
AGCACTAAGTGTGCAAATTGACTATGTAGCACTAAGTGTGCGAGTCTGATTATATAGCACTAAGT
GTGCGAGTTTGACTATGT
Found at i:84259232 original size:40 final size:40
Alignment explanation
Indices: 84259173--84259389 Score: 303
Period size: 40 Copynumber: 5.5 Consensus size: 40
84259163 AAACCAAGTA
* * * *
84259173 CCTTCGGGATTTA-ACCGGATATAGTTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* **
84259212 CCTTCGAGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
84259252 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
84259292 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
84259332 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
84259372 CCTTCAGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
84259390 ATTATCATCC
Statistics
Matches: 159, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 12 0.08
40 147 0.92
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:84267304 original size:40 final size:40
Alignment explanation
Indices: 84267248--84267371 Score: 196
Period size: 40 Copynumber: 3.1 Consensus size: 40
84267238 TGGGATTTAA
* *
84267248 CCGGATATAGTTACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
84267288 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
84267328 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
84267368 CCGG
1 CCGG
84267372 TTATCATCCG
Statistics
Matches: 79, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
39 1 0.01
40 78 0.99
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:84272012 original size:21 final size:21
Alignment explanation
Indices: 84271986--84272047 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
84271976 CCCAACCCAT
* * *
84271986 GCATATAATGTGTATATTATA
1 GCATATCATGTGCATATCATA
84272007 GCATATCATGTGCATATCATA
1 GCATATCATGTGCATATCATA
*
84272028 ACATATCATGTGCATATCAT
1 GCATATCATGTGCATATCAT
84272048 GTCCTATCAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (21 bp):
GCATATCATGTGCATATCATA
Found at i:84272055 original size:10 final size:11
Alignment explanation
Indices: 84271985--84272059 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
84271975 ACCCAACCCA
*
84271985 TGCATATAATG
1 TGCATATCATG
* *
84271996 TGTATATTAT-
1 TGCATATCATG
*
84272006 AGCATATCATG
1 TGCATATCATG
84272017 TGCATATCAT-
1 TGCATATCATG
**
84272027 AACATATCATG
1 TGCATATCATG
84272038 TGCATATCATG
1 TGCATATCATG
*
84272049 T-CCTATCATG
1 TGCATATCATG
84272059 T
1 T
84272060 ATAACAATAT
Statistics
Matches: 51, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
10 24 0.47
11 27 0.53
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (11 bp):
TGCATATCATG
Found at i:84272217 original size:54 final size:54
Alignment explanation
Indices: 84272159--84272265 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 54
84272149 TTTAACACCC
*
84272159 TAGGGGCAAAATGGTAATTT-TACCCCACAAGGTTATCTCGGTAACTCTACCCTA
1 TAGGGGCAAAATGGT-ATTTCTACCCCACAAGGGTATCTCGGTAACTCTACCCTA
* *** * * *
84272213 TAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCT
1 TAGGGGCAAAATGGTATTTCTACCCCACAAGGGTATCTCGGTAACTCTACCCT
84272266 GCAGGGGTAT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
53 4 0.09
54 40 0.91
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (54 bp):
TAGGGGCAAAATGGTATTTCTACCCCACAAGGGTATCTCGGTAACTCTACCCTA
Found at i:84272327 original size:21 final size:21
Alignment explanation
Indices: 84272301--84272341 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
84272291 GTACAGGGGT
*
84272301 ATTTTAGTAACTCTACCCTAC
1 ATTTTAATAACTCTACCCTAC
*
84272322 ATTTTAATAATTCTACCCTA
1 ATTTTAATAACTCTACCCTA
84272342 TAGGGGTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.02, T:0.41
Consensus pattern (21 bp):
ATTTTAATAACTCTACCCTAC
Found at i:84272360 original size:27 final size:27
Alignment explanation
Indices: 84272170--84272387 Score: 162
Period size: 27 Copynumber: 8.3 Consensus size: 27
84272160 AGGGGCAAAA
* * * * *
84272170 TGGTAATTTTACCCCACAAGGTTATCT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
84272197 CGGTAACTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
84272224 TGGTATTTCTACCCTACAAGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
84272251 CGGTAATTCTACCCTGCAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
** **
84272278 CAGTAATTCTACTGTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
84272305 TAGTAACTCTACCCTAC------ATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
** *
84272326 TAATAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* **
84272353 TGGTAATTTTA-CAAACCAGGGGTATTT
1 TGGTAATTCTACCCTA-CAGGGGTATTT
84272380 TGGTAATT
1 TGGTAATT
84272388 TTGTAAACTA
Statistics
Matches: 150, Mismatches: 34, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
21 18 0.12
26 2 0.01
27 130 0.87
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.38
Consensus pattern (27 bp):
TGGTAATTCTACCCTACAGGGGTATTT
Found at i:84272433 original size:81 final size:80
Alignment explanation
Indices: 84272345--84272794 Score: 551
Period size: 81 Copynumber: 5.6 Consensus size: 80
84272335 TACCCTATAG
* * ** *
84272345 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTGG
1 GGGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
84272410 TAATTTTACAAGGTGA
66 TAATTTTACAA-GTGA
** *
84272426 GGGTATTTTAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACAAGGGGTATTTTGG
1 GGGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
* ***
84272491 TAATTTCACAAACCA
66 TAATTTTACAAGTGA
* * * * * * *
84272506 GAGGTATTTTGGTAATTTTACAAACCAGGTGTGTTTTAGTAATTTTACAAACCAGGGGTATTTTA
1 G-GGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
*
84272571 GTAATTTTATAAGTGGA
65 GTAATTTTACAAGT-GA
* ** * *
84272588 GGGTATTTTAGTAATTTCAAAAATTAGGGGTATTTTGATAATTTCACAAACTAGGGGTATTTTGG
1 GGGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
84272653 TAATTTTACAAGTCGA
66 TAATTTTACAAGT-GA
* *
84272669 GGGTATTTTAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTGG
1 GGGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
* *
84272734 TAATTTCACAAACT-A
66 TAATTTTAC-AAGTGA
* * *
84272749 GGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTT
1 -GGGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTT
84272795 GCTAATCGAG
Statistics
Matches: 315, Mismatches: 50, Indels: 8
0.84 0.13 0.02
Matches are distributed among these distances:
80 3 0.01
81 307 0.97
82 5 0.02
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (80 bp):
GGGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
TAATTTTACAAGTGA
Found at i:84272808 original size:27 final size:27
Alignment explanation
Indices: 84272343--84272794 Score: 496
Period size: 27 Copynumber: 16.7 Consensus size: 27
84272333 TCTACCCTAT
84272343 AGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
** *
84272370 AGGGGTATTTTGGTAATTTTGTAAACT
1 AGGGGTATTTTGGTAATTTTACAAACC
* **
84272397 AAGGGTATTTTGGTAATTTTAC-AAGG
1 AGGGGTATTTTGGTAATTTTACAAACC
* * * **
84272423 TGAGGGTATTTTAGTAATTTCACAAATT
1 AG-GGGTATTTTGGTAATTTTACAAACC
*
84272451 AGGGGTATTTTGGTAATTTTACAAACA
1 AGGGGTATTTTGGTAATTTTACAAACC
*
84272478 AGGGGTATTTTGGTAATTTCACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
*
84272505 AGAGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
* * *
84272532 AGGTGTGTTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
* * **
84272559 AGGGGTATTTTAGTAATTTTA-TAAGT
1 AGGGGTATTTTGGTAATTTTACAAACC
* * * * **
84272585 GGAGGGTATTTTAGTAATTTCAAAAATT
1 AG-GGGTATTTTGGTAATTTTACAAACC
* * *
84272613 AGGGGTATTTTGATAATTTCACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACC
**
84272640 AGGGGTATTTTGGTAATTTTACAAGTC
1 AGGGGTATTTTGGTAATTTTACAAACC
* * *
84272667 -GAGGGTATTTTAGTAATTTCACAAATC
1 AG-GGGTATTTTGGTAATTTTACAAACC
* *
84272694 AGGGGTATTTTGGTAATTTCACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACC
* *
84272721 AGGGGTATTTTGGTAATTTCACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACC
84272748 AGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
*
84272775 AGGGGTATTTTAGTAATTTT
1 AGGGGTATTTTGGTAATTTT
84272795 GCTAATCGAG
Statistics
Matches: 364, Mismatches: 55, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
26 6 0.02
27 350 0.96
28 8 0.02
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACC
Found at i:84275476 original size:14 final size:14
Alignment explanation
Indices: 84275457--84275490 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
84275447 TCCTTGAGTT
84275457 TCTATAGGCACATC
1 TCTATAGGCACATC
84275471 TCTATAGGCACATC
1 TCTATAGGCACATC
84275485 TCTATA
1 TCTATA
84275491 CAGCTTATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (14 bp):
TCTATAGGCACATC
Found at i:84283767 original size:64 final size:64
Alignment explanation
Indices: 84283686--84283869 Score: 176
Period size: 67 Copynumber: 2.8 Consensus size: 64
84283676 AGACATTATG
* * *
84283686 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
** * * * * * *
84283750 ATGTAGCTAGGTCGCATGCATGGTTCCAGGTGAAGGACACCATGTAGACAATAGAGCTATGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
84283815 AA
63 AA
* * *
84283817 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
84283870 CGAACTATAT
Statistics
Matches: 94, Mismatches: 21, Indels: 11
0.75 0.17 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 24 0.26
66 20 0.21
67 31 0.33
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:84286545 original size:41 final size:41
Alignment explanation
Indices: 84286494--84286795 Score: 396
Period size: 41 Copynumber: 7.3 Consensus size: 41
84286484 TATTCGGGCT
*
84286494 TTATTTCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* *
84286535 TTATTGCCTAGCAGGCTTTGTGCCGGTGCATTATATTAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* *
84286576 TTATTGCCTAGCAGGCTTTGTGCTGATGTA--ATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* * *
84286615 TTATTGCCTAGCAGACTTTATATGCCGGTGTATTAAATCAGGC
1 TTATTGCCTAGCAGGC-TT-TGTGCCGGTGTATTATATCAGGC
84286658 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* * **
84286699 TTATTGCCTAGCAGACTTTATATGCCAATGTATTATATCAGGC
1 TTATTGCCTAGCAGGC-TT-TGTGCCGGTGTATTATATCAGGC
* *
84286742 TTATTGCCTAGTAGGCTTTGTGCTGGTGTATTATA-CTAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATC-AGGC
84286783 TT-TATGCCTAGCA
1 TTAT-TGCCTAGCA
84286796 AATTTTATGT
Statistics
Matches: 227, Mismatches: 26, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
39 23 0.10
40 4 0.02
41 137 0.60
42 6 0.03
43 57 0.25
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.37
Consensus pattern (41 bp):
TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
Found at i:84286724 original size:84 final size:84
Alignment explanation
Indices: 84286494--84286795 Score: 436
Period size: 84 Copynumber: 3.6 Consensus size: 84
84286484 TATTCGGGCT
* * *
84286494 TTATTTCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGC-TT-TGTG
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGACTTTATATG
* *
84286557 CCGGTGCATTATATTAGGC
66 CCGGTGTATTATATCAGGC
* *
84286576 TTATTGCCTAGCAGGCTTTGTGCTGATGTA--ATATCAGGCTTATTGCCTAGCAGACTTTATATG
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGACTTTATATG
*
84286639 CCGGTGTATTAAATCAGGC
66 CCGGTGTATTATATCAGGC
84286658 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGACTTTATATG
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGACTTTATATG
**
84286723 CCAATGTATTATATCAGGC
66 CCGGTGTATTATATCAGGC
* *
84286742 TTATTGCCTAGTAGGCTTTGTGCTGGTGTATTATA-CTAGGCTT-TATGCCTAGCA
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATC-AGGCTTAT-TGCCTAGCA
84286796 AATTTTATGT
Statistics
Matches: 199, Mismatches: 15, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
80 24 0.12
81 2 0.01
82 74 0.37
83 2 0.01
84 97 0.49
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.37
Consensus pattern (84 bp):
TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGACTTTATATG
CCGGTGTATTATATCAGGC
Found at i:84289320 original size:26 final size:26
Alignment explanation
Indices: 84289259--84289313 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
84289249 TGAAATGGTT
84289259 GGTATTTGGTTATGAGTTTAAGTGCA
1 GGTATTTGGTTATGAGTTTAAGTGCA
84289285 GGTATTTGGTTATGAGTTTAAGTGCA
1 GGTATTTGGTTATGAGTTTAAGTGCA
84289311 GGT
1 GGT
84289314 CATTGGTGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.22, C:0.04, G:0.33, T:0.42
Consensus pattern (26 bp):
GGTATTTGGTTATGAGTTTAAGTGCA
Found at i:84300882 original size:27 final size:27
Alignment explanation
Indices: 84300844--84300986 Score: 164
Period size: 27 Copynumber: 5.3 Consensus size: 27
84300834 CAAAATAGTC
* *
84300844 ATTTTAC-CCTACAGGGGTATTTCGGTA
1 ATTTTACACC-ACAAGGGTATTTCGATA
* *
84300871 ATTTTACACTACAAGGGTATTTCGTTA
1 ATTTTACACCACAAGGGTATTTCGATA
* * *
84300898 ATTTTACACCACAAAGGTATTTTGGTA
1 ATTTTACACCACAAGGGTATTTCGATA
*
84300925 ATTTTACACCATAAGGGTATTTCGATA
1 ATTTTACACCACAAGGGTATTTCGATA
**
84300952 ATTTTA-AAAATCAAGGGTATTTCGATA
1 ATTTTACACCA-CAAGGGTATTTCGATA
84300979 ATTTTACA
1 ATTTTACA
84300987 AATTGGGGGT
Statistics
Matches: 99, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
26 2 0.02
27 95 0.96
28 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.38
Consensus pattern (27 bp):
ATTTTACACCACAAGGGTATTTCGATA
Found at i:84300989 original size:27 final size:27
Alignment explanation
Indices: 84300858--84301021 Score: 138
Period size: 27 Copynumber: 6.1 Consensus size: 27
84300848 TACCCTACAG
* *
84300858 GGGTATTTCGGTAATTTTAC-ACTACAA
1 GGGTATTTCGATAATTTTACAAAT-CAA
* *
84300885 GGGTATTTCGTTAATTTTACACCA-CAA
1 GGGTATTTCGATAATTTTACA-AATCAA
* * * *
84300912 AGGTATTTTGGTAATTTTACACCAT-AA
1 GGGTATTTCGATAATTTTACA-AATCAA
*
84300939 GGGTATTTCGATAATTTTAAAAATCAA
1 GGGTATTTCGATAATTTTACAAATCAA
***
84300966 GGGTATTTCGATAATTTTACAAATTGG
1 GGGTATTTCGATAATTTTACAAATCAA
* *
84300993 GGGTATTT-TAGTAATTTTACAAATTAA
1 GGGTATTTCGA-TAATTTTACAAATCAA
84301020 GG
1 GG
84301022 TCTTAACATC
Statistics
Matches: 114, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
26 3 0.03
27 111 0.97
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAAATCAA
Found at i:84316781 original size:24 final size:24
Alignment explanation
Indices: 84316749--84316819 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
84316739 CTGTCAGGAG
*
84316749 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAA
84316773 AGGATTTAGGAGTTGATAAGGGAA
1 AGGATTTAGGAGTTGATAAGGGAA
**
84316797 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
84316820 GGAAATCTAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.37, C:0.01, G:0.38, T:0.24
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAA
Found at i:84316831 original size:48 final size:48
Alignment explanation
Indices: 84316749--84316842 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
84316739 CTGTCAGGAG
** * *
84316749 AGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGAT-AAGGGAA
1 AGGATTTAGGAGCAGATAAGGGA-AGGATCTAGGAGCTGATCAAGGGAA
84316797 AGGATTTAGGAGCAGATAAGGG-AGGAAATCTAGGAGCTGATCAAGG
1 AGGATTTAGGAGCAGATAAGGGAAGG--ATCTAGGAGCTGATCAAGG
84316843 AACAGGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 3 0.08
48 32 0.82
49 4 0.10
ACGTcount: A:0.36, C:0.04, G:0.37, T:0.22
Consensus pattern (48 bp):
AGGATTTAGGAGCAGATAAGGGAAGGATCTAGGAGCTGATCAAGGGAA
Found at i:84318276 original size:27 final size:27
Alignment explanation
Indices: 84318238--84318346 Score: 114
Period size: 27 Copynumber: 4.0 Consensus size: 27
84318228 AAGCGTCCTA
*
84318238 GTGGCTATGCCACAATTATCTGATCTG
1 GTGGCTCTGCCACAATTATCTGATCTG
*
84318265 GTGGCTCTGCCACATATT-TCTGTTCTG
1 GTGGCTCTGCCACA-ATTATCTGATCTG
* *
84318292 GTGGCTTTGCCACGATTATCTGTATCTG
1 GTGGCTCTGCCACAATTATCTG-ATCTG
* * * *
84318320 GTGACTCTGTCAC-ATTTTCTGTTCTG
1 GTGGCTCTGCCACAATTATCTGATCTG
84318346 G
1 G
84318347 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 8 0.12
27 44 0.64
28 17 0.25
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.39
Consensus pattern (27 bp):
GTGGCTCTGCCACAATTATCTGATCTG
Found at i:84318339 original size:54 final size:54
Alignment explanation
Indices: 84318238--84318346 Score: 166
Period size: 54 Copynumber: 2.0 Consensus size: 54
84318228 AAGCGTCCTA
*
84318238 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTTCTG
1 GTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATTTCTGTTCTG
* * *
84318292 GTGGCTTTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTTCTG
1 GTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATTTCTGTTCTG
84318346 G
1 G
84318347 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.39
Consensus pattern (54 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATTTCTGTTCTG
Found at i:84318368 original size:54 final size:55
Alignment explanation
Indices: 84318244--84318368 Score: 130
Period size: 54 Copynumber: 2.3 Consensus size: 55
84318234 CCTAGTGGCT
* * * ** *
84318244 ATGCCACAATTATCTG-ATCTGGTGGCTCTGCCACATATTTCTGTTCTGGTGGCT
1 ATGCCACGATAATCTGTATCTGGTGACTCTGCCACATATTTCTGTTCTGGCAGCC
* * *
84318298 TTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTTCTGGCAGCC
1 ATGCCACGATAATCTGTATCTGGTGACTCTGCCACATATTTCTGTTCTGGCAGCC
*
84318352 ATGCTAC-ATAATTCTGT
1 ATGCCACGATAA-TCTGT
84318369 GGCGTGTAGC
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
53 3 0.05
54 38 0.64
55 18 0.31
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.38
Consensus pattern (55 bp):
ATGCCACGATAATCTGTATCTGGTGACTCTGCCACATATTTCTGTTCTGGCAGCC
Found at i:84322936 original size:22 final size:24
Alignment explanation
Indices: 84322911--84322963 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 24
84322901 TACAAATTGA
84322911 TAAA-AAT-TGATAATGGGTTAGG
1 TAAATAATCTGATAATGGGTTAGG
*
84322933 TAAATATTCCATGATAATGGGTTAGG
1 TAAATAAT-C-TGATAATGGGTTAGG
84322959 TAAAT
1 TAAAT
84322964 GTTCCATGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 4 0.15
23 2 0.08
26 20 0.77
ACGTcount: A:0.40, C:0.04, G:0.23, T:0.34
Consensus pattern (24 bp):
TAAATAATCTGATAATGGGTTAGG
Found at i:84322948 original size:26 final size:26
Alignment explanation
Indices: 84322918--84322973 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
84322908 TGATAAAAAT
84322918 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
84322944 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
84322970 TGAT
1 TGAT
84322974 GGGCATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:84324570 original size:41 final size:41
Alignment explanation
Indices: 84324506--84324889 Score: 529
Period size: 41 Copynumber: 9.3 Consensus size: 41
84324496 ACATAAAATT
*
84324506 TGCTAGGC-ATAAAGCCT-AGTATAATACACCGGCACAGAGCC
1 TGCTAGGCAAT-AAGCCTGA-TATAATACACCGGCACAAAGCC
* * * *
84324547 TACTAGGCAATAAGCCTGATATAATACACTGAGATATAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCG-G-CACAAAGCC
84324590 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* * * * *
84324631 TACTAGGCAATAAACCTGATTTAATACATCGACACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* * *
84324672 TGCTAGGCAATAAGCCTGATTTAAAACACCGGAACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* *
84324713 TGCTAGGCAATAAGCCTGATTTAATACACCGGCACAAAGCG
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* * * *
84324754 TGCTAGGCAATAAGCTTGATTTAAAACACCGGCACAAAGCT
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
*
84324795 TGCTAGGCAATAAGCTTGATATAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
*
84324836 TGCTAGGCAATAAGCCTGATATAATACACCGACACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
84324877 TGCTAGGCAATAA
1 TGCTAGGCAATAA
84324890 AGCTCGAATA
Statistics
Matches: 308, Mismatches: 31, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
41 268 0.87
42 5 0.02
43 35 0.11
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.20
Consensus pattern (41 bp):
TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
Found at i:84328950 original size:20 final size:20
Alignment explanation
Indices: 84328921--84328958 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
84328911 GTTGATTCAT
* *
84328921 TTAATTTTCTAATCACGTTA
1 TTAATCTTCTAAACACGTTA
84328941 TTAATCTTCTAAACACGT
1 TTAATCTTCTAAACACGT
84328959 ACTTTTGTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.18, G:0.05, T:0.45
Consensus pattern (20 bp):
TTAATCTTCTAAACACGTTA
Found at i:84331467 original size:41 final size:41
Alignment explanation
Indices: 84331410--84331752 Score: 510
Period size: 41 Copynumber: 8.3 Consensus size: 41
84331400 ACATAAAATT
* *
84331410 TGCTAGGC-ATAAAGCCT-AGTATAATACACCGGCATAGAGCC
1 TGCTAGGCAAT-AAGCCTGA-TATAATACACCGGCACAAAGCC
*
84331451 TGCTAGGCAATAAGCCTGATATAATACACCGGCATATAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGC--ACAAAGCC
*
84331494 TGCTAGGCAATAAGCCTGATATAATACACCGACACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* * *
84331535 TGCTAGGCAAAAAGCATGATTTAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* * * *
84331576 TACTAGGTAATAAGCCTGATTTAAAACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* *
84331617 TGCTAGGCAATAAGCCTGATTTAAAACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
*
84331658 TACTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
84331699 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
84331740 TGCTAGGCAATAA
1 TGCTAGGCAATAA
84331753 AGCCCGAATA
Statistics
Matches: 280, Mismatches: 18, Indels: 8
0.92 0.06 0.03
Matches are distributed among these distances:
41 238 0.85
42 3 0.01
43 39 0.14
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.18
Consensus pattern (41 bp):
TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
Found at i:84333076 original size:26 final size:26
Alignment explanation
Indices: 84333047--84333124 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 26
84333037 TGTTACATAT
*
84333047 TTATTTAGCAGGCTTTGAGCCGGTGA
1 TTATTTAGCAGGCTTTGAGCTGGTGA
* *
84333073 TTATTTAGCAGGCTTTGAGTTGGTGT
1 TTATTTAGCAGGCTTTGAGCTGGTGA
84333099 TTATTTAGCAGGCTTTGAGCTGGTGA
1 TTATTTAGCAGGCTTTGAGCTGGTGA
84333125 ATATATAGGA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.18, C:0.12, G:0.31, T:0.40
Consensus pattern (26 bp):
TTATTTAGCAGGCTTTGAGCTGGTGA
Found at i:84333546 original size:26 final size:26
Alignment explanation
Indices: 84333510--84333563 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
84333500 ATGGGATGTT
84333510 AGTAAGGTCGTATTAAAATTTTGATA
1 AGTAAGGTCGTATTAAAATTTTGATA
84333536 AGTAAGGTCGTATTAAAATTTTGATA
1 AGTAAGGTCGTATTAAAATTTTGATA
84333562 AG
1 AG
84333564 AATTATGATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.04, G:0.20, T:0.37
Consensus pattern (26 bp):
AGTAAGGTCGTATTAAAATTTTGATA
Found at i:84336630 original size:12 final size:13
Alignment explanation
Indices: 84336604--84336634 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
84336594 TGCAAAATTA
84336604 AAGAAAAGAAAAG
1 AAGAAAAGAAAAG
84336617 AAGAAAAG-AAAG
1 AAGAAAAGAAAAG
84336629 AAGAAA
1 AAGAAA
84336635 GAACGCACGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.56
13 8 0.44
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (13 bp):
AAGAAAAGAAAAG
Found at i:84336865 original size:13 final size:13
Alignment explanation
Indices: 84336847--84336871 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
84336837 AATTGATATC
84336847 TGTGAAAATTTTG
1 TGTGAAAATTTTG
84336860 TGTGAAAATTTT
1 TGTGAAAATTTT
84336872 ATCGTTTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (13 bp):
TGTGAAAATTTTG
Found at i:84337808 original size:28 final size:28
Alignment explanation
Indices: 84337768--84337824 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
84337758 CGTACGAGGT
84337768 AAGTCTATATACAAATAAATGTGTTTGA
1 AAGTCTATATACAAATAAATGTGTTTGA
84337796 AAGTCTATATACAAATAAATGTGTTTGA
1 AAGTCTATATACAAATAAATGTGTTTGA
84337824 A
1 A
84337825 TTGATTTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.35
Consensus pattern (28 bp):
AAGTCTATATACAAATAAATGTGTTTGA
Found at i:84338089 original size:42 final size:41
Alignment explanation
Indices: 84337982--84338099 Score: 121
Period size: 44 Copynumber: 2.8 Consensus size: 41
84337972 AGGATTTTCG
* * **
84337982 ATATTTGATTTCGTGTAAGAACACATCTGGGACATTGGCAT
1 ATATTTGATTTCGTGTAAGACCATATCTGGGACATCAGCAT
* *
84338023 -TGATTTGAGATTTACGTGTAAGACCATGTCTGGGACATCAGTAT
1 AT-ATTT--GATTT-CGTGTAAGACCATATCTGGGACATCAGCAT
*
84338067 CATATTTGATTTCGTGTAAGACCCTATCTGGGA
1 -ATATTTGATTTCGTGTAAGACCATATCTGGGA
84338100 TAGTGGCATT
Statistics
Matches: 63, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
40 1 0.02
41 4 0.06
42 19 0.30
43 10 0.16
44 24 0.38
45 4 0.06
46 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (41 bp):
ATATTTGATTTCGTGTAAGACCATATCTGGGACATCAGCAT
Found at i:84338150 original size:43 final size:43
Alignment explanation
Indices: 84337981--84338153 Score: 154
Period size: 43 Copynumber: 4.0 Consensus size: 43
84337971 TAGGATTTTC
* *
84337981 GATATTTGATTTCGTGTAAGAACACATCTGGGACATTGGCATT
1 GATATTTGATTACGTGTAAGACCACATCTGGGACATTGGCATT
* ** ** *
84338024 GAT-TTGAGATTTACGTGTAAGACCATGTCTGGGACATCAGTA-T
1 GATATT-TGA-TTACGTGTAAGACCACATCTGGGACATTGGCATT
* * * *
84338067 CATATTTGATTTCGTGTAAGACC-CTATCTGGGATAGTGGCATT
1 GATATTTGATTACGTGTAAGACCAC-ATCTGGGACATTGGCATT
* * * *
84338110 GATAATTGATTACATGTAAGACCACGTCTGGGACGTTGGCATT
1 GATATTTGATTACGTGTAAGACCACATCTGGGACATTGGCATT
84338153 G
1 G
84338154 TACGAACTTT
Statistics
Matches: 98, Mismatches: 26, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
42 25 0.26
43 45 0.46
44 28 0.29
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.34
Consensus pattern (43 bp):
GATATTTGATTACGTGTAAGACCACATCTGGGACATTGGCATT
Found at i:84341125 original size:24 final size:24
Alignment explanation
Indices: 84341098--84341156 Score: 91
Period size: 25 Copynumber: 2.4 Consensus size: 24
84341088 GTAAGGAGGG
84341098 GATAAGGGAGAAGATTTAGGAGCT
1 GATAAGGGAGAAGATTTAGGAGCT
*
84341122 GATAAGGGGAGAAGTTTTAGGAGCT
1 GATAA-GGGAGAAGATTTAGGAGCT
*
84341147 GATTAGGGAG
1 GATAAGGGAG
84341157 GGCAGTGTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 10 0.31
25 22 0.69
ACGTcount: A:0.34, C:0.03, G:0.41, T:0.22
Consensus pattern (24 bp):
GATAAGGGAGAAGATTTAGGAGCT
Found at i:84342043 original size:16 final size:15
Alignment explanation
Indices: 84342017--84342047 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
84342007 ACTAGATCGG
84342017 TAAAAGCCGAAAAGC
1 TAAAAGCCGAAAAGC
84342032 TAAAATGCCGAAAAGC
1 TAAAA-GCCGAAAAGC
84342048 CAGTATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.52, C:0.19, G:0.19, T:0.10
Consensus pattern (15 bp):
TAAAAGCCGAAAAGC
Found at i:84342498 original size:27 final size:26
Alignment explanation
Indices: 84342466--84342571 Score: 131
Period size: 27 Copynumber: 3.9 Consensus size: 26
84342456 AGGAAGCGTC
*
84342466 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
84342493 CTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
84342520 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* *
84342548 CTGGTGACTCTGTCACATTATCTG
1 CTGGTGGCTCTGCCACATTATCTG
84342572 TTCTAGCAGC
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
26 2 0.03
27 50 0.72
28 17 0.25
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:84342570 original size:54 final size:54
Alignment explanation
Indices: 84342466--84342575 Score: 177
Period size: 54 Copynumber: 2.0 Consensus size: 54
84342456 AGGAAGCGTC
*
84342466 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGTCACATATATCTGTT
* *
84342520 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGTCACATATATCTGTT
84342574 CT
1 CT
84342576 AGCAGCTATG
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
54 33 0.63
55 19 0.37
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGTCACATATATCTGTT
Found at i:84348855 original size:24 final size:24
Alignment explanation
Indices: 84348828--84348886 Score: 91
Period size: 25 Copynumber: 2.4 Consensus size: 24
84348818 GTAAGGAGGG
84348828 GATAAGGGAGAAGATTTAGGAGCT
1 GATAAGGGAGAAGATTTAGGAGCT
*
84348852 GATAAGGGGAGAAGTTTTAGGAGCT
1 GATAA-GGGAGAAGATTTAGGAGCT
*
84348877 GATTAGGGAG
1 GATAAGGGAG
84348887 GGCAGTGTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 10 0.31
25 22 0.69
ACGTcount: A:0.34, C:0.03, G:0.41, T:0.22
Consensus pattern (24 bp):
GATAAGGGAGAAGATTTAGGAGCT
Found at i:84349869 original size:27 final size:26
Alignment explanation
Indices: 84349828--84349966 Score: 152
Period size: 27 Copynumber: 5.2 Consensus size: 26
84349818 AGGAAGCATC
*
84349828 CTGGTGGCTGTGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
84349855 CTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
84349882 CTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
84349909 CTGGTGGCTCTGCTACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
84349937 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
84349963 CTGG
1 CTGG
84349967 CAGCTATGCT
Statistics
Matches: 97, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
26 7 0.07
27 74 0.76
28 16 0.16
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:84349916 original size:54 final size:55
Alignment explanation
Indices: 84349828--84349966 Score: 169
Period size: 54 Copynumber: 2.6 Consensus size: 55
84349818 AGGAAGCATC
* * *
84349828 CTGGTGGCTGTGCCACA-ATTATCTGATCTAGTGGCTCTGCCAC-ATATATCTGT-T
1 CTGGTGGCTCTGCCACATA-TATCTGTTCTGGTGGCTCTGCCACGAT-TATCTGTAT
* *
84349882 CTGGTGGCTCTACCACATATATCTGTTCTGGTGGCTCTGCTACGATTATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTAT
* *
84349937 CTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 CTGGTGGCTCTGCCACATATATCTGTTCTGG
84349967 CAGCTATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
54 55 0.74
55 19 0.26
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (55 bp):
CTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTAT
Found at i:84349988 original size:54 final size:54
Alignment explanation
Indices: 84349869--84349988 Score: 136
Period size: 54 Copynumber: 2.2 Consensus size: 54
84349859 TGGCTCTGCC
* ** *
84349869 ACATATATCTGTTCTGGTGGCTCTACCACATATATCTGTTCTGGTGGCTCTGCT
1 ACATATATCTGTTCTGGTGACTCTACCACATATATCTGTTCTGGCAGCTATGCT
**
84349923 ACGAT-TATCTGTATCTGGTGACTCTGTCACAT-TATCTGTTCTGGCAGCTATGCT
1 AC-ATATATCTGT-TCTGGTGACTCTACCACATATATCTGTTCTGGCAGCTATGCT
* *
84349977 GCATATTTCTGT
1 ACATATATCTGT
84349989 GGCGTGTAGC
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
53 2 0.04
54 35 0.64
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.40
Consensus pattern (54 bp):
ACATATATCTGTTCTGGTGACTCTACCACATATATCTGTTCTGGCAGCTATGCT
Found at i:84352076 original size:11 final size:10
Alignment explanation
Indices: 84352055--84352087 Score: 50
Period size: 11 Copynumber: 3.3 Consensus size: 10
84352045 CCTGTAGTTG
84352055 AATTTTTCTA
1 AATTTTTCTA
84352065 AATTTTTCCTA
1 AATTTTT-CTA
84352076 AATTTTT-TA
1 AATTTTTCTA
84352085 AAT
1 AAT
84352088 GTTCCCAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 5 0.23
10 7 0.32
11 10 0.45
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (10 bp):
AATTTTTCTA
Found at i:84354701 original size:34 final size:34
Alignment explanation
Indices: 84354658--84354725 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
84354648 TAAACATATT
84354658 TACAAGCCATTTTAAAACAATTAATTCAAGTCAA
1 TACAAGCCATTTTAAAACAATTAATTCAAGTCAA
84354692 TACAAGCCATTTTAAAACAATTAATTCAAGTCAA
1 TACAAGCCATTTTAAAACAATTAATTCAAGTCAA
84354726 AACCGAGTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.47, C:0.18, G:0.06, T:0.29
Consensus pattern (34 bp):
TACAAGCCATTTTAAAACAATTAATTCAAGTCAA
Found at i:84356141 original size:49 final size:49
Alignment explanation
Indices: 84356043--84356141 Score: 112
Period size: 49 Copynumber: 2.0 Consensus size: 49
84356033 TATACCAGGC
* * * *
84356043 AACTCATAAGAGTCTATAACAGGAAGTTCACAAAGAACTTTTAATTAGGA
1 AACTCATAAGAGCCTAT-ACAGGAAGATCACAAAGAACATGTAATTAGGA
*
84356093 AACTCATGAAGAGCCTAT-CAGGAAGATCACAAAGAGCAATGTAA-TAGGA
1 AACTCAT-AAGAGCCTATACAGGAAGATCACAAAGAAC-ATGTAATTAGGA
84356142 CCTCCAATAG
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
49 22 0.52
50 11 0.26
51 9 0.21
ACGTcount: A:0.44, C:0.15, G:0.19, T:0.21
Consensus pattern (49 bp):
AACTCATAAGAGCCTATACAGGAAGATCACAAAGAACATGTAATTAGGA
Found at i:84360167 original size:41 final size:41
Alignment explanation
Indices: 84360117--84360253 Score: 193
Period size: 41 Copynumber: 3.3 Consensus size: 41
84360107 TGTAAACAGT
* **
84360117 GGCACGTATGTGTAATTCAGGGGTACCAAAGTACAAATAGG
1 GGCACATATGTGTAATTCAGGGGTACTGAAGTACAAATAGG
** * *
84360158 GGCATGTATGTGTAATTTAGGGGTACTGAAGTACAAACAGG
1 GGCACATATGTGTAATTCAGGGGTACTGAAGTACAAATAGG
* *
84360199 GGCACAAATGTGCAATTCAGGGGTACTGAAGTACAAATAGG
1 GGCACATATGTGTAATTCAGGGGTACTGAAGTACAAATAGG
84360240 GGCACATATGTGTA
1 GGCACATATGTGTA
84360254 GTTTATAGAA
Statistics
Matches: 83, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 83 1.00
ACGTcount: A:0.34, C:0.13, G:0.30, T:0.23
Consensus pattern (41 bp):
GGCACATATGTGTAATTCAGGGGTACTGAAGTACAAATAGG
Found at i:84365967 original size:40 final size:40
Alignment explanation
Indices: 84365923--84366108 Score: 281
Period size: 39 Copynumber: 4.7 Consensus size: 40
84365913 GCTACTTGCT
84365923 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
84365963 CAAATGCCTTC-GGACTTATCCCGGATATAGTAACTC-CA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
84366001 CAAATGCCTTCGGGACTTCGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
84366041 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
84366080 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
84366109 CATCCGAATA
Statistics
Matches: 131, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
38 14 0.11
39 78 0.60
40 38 0.29
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:84369723 original size:28 final size:28
Alignment explanation
Indices: 84369666--84369846 Score: 267
Period size: 28 Copynumber: 6.5 Consensus size: 28
84369656 TAAATTGTGC
*
84369666 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
84369693 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
84369721 AGCGCTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
84369749 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
84369777 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
84369805 AGCACTAGGTGTGCGAG-CTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
84369832 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
84369847 GACTTAATAT
Statistics
Matches: 142, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
27 37 0.26
28 105 0.74
ACGTcount: A:0.25, C:0.14, G:0.30, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:84377888 original size:28 final size:28
Alignment explanation
Indices: 84377831--84378011 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
84377821 TAAATTGTGC
*
84377831 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
84377858 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
84377886 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
84377914 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
84377942 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
84377970 AGCACTAGGTGTGCGAG-CTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
84377997 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
84378012 GACTTAATAT
Statistics
Matches: 144, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
27 37 0.26
28 107 0.74
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:84377947 original size:84 final size:83
Alignment explanation
Indices: 84377806--84378011 Score: 297
Period size: 84 Copynumber: 2.5 Consensus size: 83
84377796 GAGATTGGCG
* * * *
84377806 CTAAGTGTGCGGGTTTAAATTGTGCAGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTG
1 CTAAGTGTGCGAGTTT-GATTATGTAGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTG
84377871 CGAGTTTGACTATGTAGCA
65 CGAGTTTGACTATGTAGCA
*
84377890 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTG
1 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTG
*
84377955 CGAGTTTGATTATGTAGCA
65 CGAGTTTGACTATGTAGCA
* * * *
84377974 CTAGGTGTGCGAG-CTGATTATATAGCACTGAGTGTGCG
1 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCG
84378012 GACTTAATAT
Statistics
Matches: 111, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
83 43 0.39
84 68 0.61
ACGTcount: A:0.25, C:0.14, G:0.30, T:0.32
Consensus pattern (83 bp):
CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGC
GAGTTTGACTATGTAGCA
Found at i:84382942 original size:31 final size:31
Alignment explanation
Indices: 84382907--84382968 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
84382897 TTACGGTTCG
84382907 ATTGATTTTTAGTAAGGGAGTTTCATTTGTT
1 ATTGATTTTTAGTAAGGGAGTTTCATTTGTT
84382938 ATTGATTTTTAGTAAGGGAGTTTCATTTGTT
1 ATTGATTTTTAGTAAGGGAGTTTCATTTGTT
84382969 CATCGATTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.03, G:0.23, T:0.52
Consensus pattern (31 bp):
ATTGATTTTTAGTAAGGGAGTTTCATTTGTT
Done.