Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 257 of 333
Found at i:84754342 original size:18 final size:18
Alignment explanation
Indices: 84754319--84754357 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
84754309 ATGTTCTTTA
*
84754319 GCGGCGTTTGTGGGGAAT
1 GCGGCGATTGTGGGGAAT
84754337 GCGGCGATTGTGGGGAAT
1 GCGGCGATTGTGGGGAAT
84754355 GCG
1 GCG
84754358 CCGCTAAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.13, C:0.13, G:0.51, T:0.23
Consensus pattern (18 bp):
GCGGCGATTGTGGGGAAT
Found at i:84755892 original size:38 final size:38
Alignment explanation
Indices: 84755841--84755916 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
84755831 AACCGTGAAG
84755841 TGAATCTCGGATCTCTATCTGACACAATAAACAATGAC
1 TGAATCTCGGATCTCTATCTGACACAATAAACAATGAC
*
84755879 TGAATCTCGGATCTCTATCTGACACAATAGACAATGAC
1 TGAATCTCGGATCTCTATCTGACACAATAAACAATGAC
84755917 ACCCCGTGCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (38 bp):
TGAATCTCGGATCTCTATCTGACACAATAAACAATGAC
Found at i:84758211 original size:46 final size:46
Alignment explanation
Indices: 84758144--84758316 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
84758134 TGTAACCCGC
* *
84758144 CCATAAGCGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
84758190 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
84758240 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
84758283 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC
84758317 AGATGCTCAA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 59 0.55
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:84758265 original size:93 final size:93
Alignment explanation
Indices: 84758151--84758322 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
84758141 CGCCCATAAG
* * *
84758151 CGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
84758216 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCAGATGCCTAGTTACATCTCA
*
84758244 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
84758309 ACGAGTTCAGATGC
66 ACGAGTTCAGATGC
84758323 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCAGATGCCTAGTTACATCTCA
Found at i:84764507 original size:54 final size:54
Alignment explanation
Indices: 84764448--84764742 Score: 347
Period size: 54 Copynumber: 5.5 Consensus size: 54
84764438 TTAGTTTACC
* * **
84764448 AAATTACCAAAATACCATTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCATTGGTTTGTA
*
84764502 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCATTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCATTGGTTTGTA
* *
84764556 AAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCATTGGTTTGTA
* * * * *
84764610 AAATTATCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCATTGATTTGTG
1 AAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCATTGGTTTGTA
** * ** * *** * * **
84764664 AAATTACTGAAATACCCTCGACTTGTAAAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCATTGGTTTGTA
* *
84764718 AAATTACCAAAGTACCCTTGATTTA
1 AAATTACCAAAATACCCTTGGTTTA
84764743 CAGAATTATC
Statistics
Matches: 206, Mismatches: 35, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 206 1.00
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (54 bp):
AAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCATTGGTTTGTA
Found at i:84764690 original size:81 final size:81
Alignment explanation
Indices: 84764448--84764741 Score: 345
Period size: 81 Copynumber: 3.6 Consensus size: 81
84764438 TTAGTTTACC
* * * *
84764448 AAATTACCAAAATACCATTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCATTGGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTACCAAA
**
84764513 ATACCCTTGGTTTACA
66 ATACCCTTGGTTTGTA
* * *
84764529 AAATTACCAAAATACCATTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCATTGGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTACCAAA
84764594 ATACCCTTGGTTTGTA
66 ATACCCTTGGTTTGTA
* * * * * **
84764610 AAATTATCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCATTGATTTGTGAAATTACTGAA
1 AAATTACCAAAATACCATTGGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTACCAAA
* **
84764675 ATACCCTCGACTTGTA
66 ATACCCTTGGTTTGTA
*** * * ** *
84764691 AAATTATTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTTGATTT
1 AAATTACCAAAATACCATTGGTTTGTAAAATTACCAAAATACCCTTGATTT
84764742 ACAGAATTAT
Statistics
Matches: 185, Mismatches: 28, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 185 1.00
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (81 bp):
AAATTACCAAAATACCATTGGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTACCAAA
ATACCCTTGGTTTGTA
Found at i:84764750 original size:27 final size:27
Alignment explanation
Indices: 84764448--84764742 Score: 311
Period size: 27 Copynumber: 10.9 Consensus size: 27
84764438 TTAGTTTACC
*
84764448 AAATTACCAAAATACCATTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
* * *
84764475 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
*
84764502 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTATA
* *
84764529 AAATTACCAAAATACCATTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
*
84764556 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
*
84764583 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
* * *
84764610 AAATTATCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
* * * *
84764637 AAATTACCAAAATACCATTGATTTGTG
1 AAATTACCAAAATACCCTTGGTTTATA
** * ** *
84764664 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
*** * ** *
84764691 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
* *
84764718 AAATTACCAAAGTACCCTTGATTTA
1 AAATTACCAAAATACCCTTGGTTTA
84764743 CAGAATTATC
Statistics
Matches: 231, Mismatches: 37, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 231 1.00
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTATA
Found at i:84764803 original size:27 final size:27
Alignment explanation
Indices: 84764773--84765273 Score: 741
Period size: 27 Copynumber: 18.6 Consensus size: 27
84764763 CGATTTACAA
84764773 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
84764800 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
84764827 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
84764854 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
84764881 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
84764908 AATTATCGAAATACCCCTATAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
84764935 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
84764962 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
84764989 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
84765016 AATTATCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
84765043 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
84765070 AATTACCGGAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
84765097 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
84765124 AATTACTAAAATACCCCTGTATGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
84765151 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
84765178 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
84765205 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
84765232 AATTACTAAAATACCCCTGTAAGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
84765259 AATTATCGAGATACC
1 AATTACCGAAATACC
84765274 TTATTGGGTA
Statistics
Matches: 432, Mismatches: 42, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 432 1.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:84765971 original size:27 final size:27
Alignment explanation
Indices: 84765941--84766042 Score: 127
Period size: 27 Copynumber: 3.8 Consensus size: 27
84765931 ATTCTGTTAA
* *
84765941 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
84765968 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
84765995 GTGGCTCTGCCACAATATCTGTATT-TG
1 GTGGCTCTGCCACAATATCTGT-TTCTG
* *
84766022 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
84766043 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
26 8 0.12
27 50 0.75
28 9 0.13
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:84766217 original size:6 final size:6
Alignment explanation
Indices: 84766179--84766248 Score: 72
Period size: 6 Copynumber: 11.3 Consensus size: 6
84766169 TTGCATTCAC
* *
84766179 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
84766229 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
84766249 AATGTTTCTT
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
5 3 0.06
6 41 0.76
7 9 0.17
8 1 0.02
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:84768477 original size:18 final size:19
Alignment explanation
Indices: 84768454--84768490 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
84768444 CGAATGTACA
84768454 TTTCATATACA-CATATAT
1 TTTCATATACATCATATAT
*
84768472 TTTCATTTACATCATATAT
1 TTTCATATACATCATATAT
84768491 AATTTGCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.35, C:0.16, G:0.00, T:0.49
Consensus pattern (19 bp):
TTTCATATACATCATATAT
Found at i:84772600 original size:46 final size:46
Alignment explanation
Indices: 84772514--84772723 Score: 147
Period size: 46 Copynumber: 4.7 Consensus size: 46
84772504 ACATATTTGT
* *
84772514 GCCGATGCCATGTCCTAGACATGGTCTTACACT-GA-CACATCTCATA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGATTACATCTCATA
84772560 GCCGATGCATGTCCCAGACATGTCTTACACTGGATTACA--TC---
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGATTACATCTCATA
* * * *
84772601 -CCGATGCATGT-CCAGACATGTCTTACACTAGCTTTCATCTCAAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGATTACATCTCATA
* * * * * *
84772645 GTCAATGCCATGCCCCAGACATGGTTTTACACTGG-TT-C-TCATAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGATTACATC-TCA--TA
* *
84772693 GACGATGTATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
84772724 AGCGCACAAA
Statistics
Matches: 132, Mismatches: 18, Indels: 28
0.74 0.10 0.16
Matches are distributed among these distances:
39 23 0.17
40 11 0.08
41 2 0.02
44 12 0.09
45 21 0.16
46 26 0.20
47 22 0.17
48 15 0.11
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGATTACATCTCATA
Found at i:84772640 original size:85 final size:88
Alignment explanation
Indices: 84772515--84772679 Score: 207
Period size: 85 Copynumber: 1.9 Consensus size: 88
84772505 CATATTTGTG
* * *
84772515 CCGATGCCATGTCCTAGACATGGTCTTACACTGACACATCTCATAGCCGATG-CATGTCCCAGAC
1 CCGATGCCATGTCCTAGACATGGTCTTACACTGACACATCTCAAAGCCAATGCCATGCCCCAGAC
84772579 AT-GTCTTACACTGGATTACATC
66 ATGGTCTTACACTGGATTACATC
* *
84772601 CCGATG-CATGTCC-AGACAT-GTCTTACACT-AGCTTTCATCTCAAAGTCAATGCCATGCCCCA
1 CCGATGCCATGTCCTAGACATGGTCTTACACTGA-C--ACATCTCAAAGCCAATGCCATGCCCCA
*
84772662 GACATGGTTTTACACTGG
63 GACATGGTCTTACACTGG
84772680 TTCTCATAAT
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
82 1 0.01
83 11 0.16
84 6 0.09
85 20 0.29
86 19 0.28
87 11 0.16
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (88 bp):
CCGATGCCATGTCCTAGACATGGTCTTACACTGACACATCTCAAAGCCAATGCCATGCCCCAGAC
ATGGTCTTACACTGGATTACATC
Found at i:84776697 original size:68 final size:69
Alignment explanation
Indices: 84776632--84776783 Score: 188
Period size: 67 Copynumber: 2.2 Consensus size: 69
84776622 CATCATGTGT
* * *
84776632 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCACATGGGT-GATAC-TAT-AAGTACACC
1 ACAAGAGAGCTACGAGACA-TAT-ATGTAGCTAGGTCACATGCGTGGATACAGATGAAGGACACC
84776694 ATGTAG
64 ATGTAG
* * * *
84776700 ACAAGAGAGCTACG-G-GATATATGTAGCTAGGTCGCATGCGTGGTTCCAGATGAAGGACACCAT
1 ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCACATGCGTGGATACAGATGAAGGACACCAT
84776763 GTAG
66 GTAG
84776767 ACAAGAGAGCTACGAGA
1 ACAAGAGAGCTACGAGA
84776784 TAAACTGGCT
Statistics
Matches: 72, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
64 19 0.26
65 6 0.08
66 3 0.04
67 29 0.40
68 15 0.21
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.20
Consensus pattern (69 bp):
ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCACATGCGTGGATACAGATGAAGGACACCAT
GTAG
Found at i:84780039 original size:158 final size:158
Alignment explanation
Indices: 84779751--84780064 Score: 556
Period size: 158 Copynumber: 2.0 Consensus size: 158
84779741 TGTCTCTACT
* * *
84779751 CGTGTGGACAAAAATAGGCTACTTGCAAAGCCAAATTGCCACCCATTTTGGACCATCCCTACAAG
1 CGTGTAGACAAAAATAGGCTACTTACAAAGCCAAATTGCCACCCATTTTGGACAATCCCTACAAG
* *
84779816 CATGAAACAAAGCACATTTCATGACCCAAAGGCAGCCAAAATCATACTAAATCATGTACAAATTG
66 CATGAAACAAAGCACATTTCATGACCCAAAGGCAGCCAAAAACATACTAAATCATGCACAAATTG
84779881 ACCCATGATATCATCATTCATTCCCACC
131 ACCCATGATATCATCATTCATTCCCACC
*
84779909 CGTGTAGACAAAAATAGGCTATTTACAAAGCCAAATTGCCACCCATTTTGGACAATCCCTACAAG
1 CGTGTAGACAAAAATAGGCTACTTACAAAGCCAAATTGCCACCCATTTTGGACAATCCCTACAAG
**
84779974 CATGAAACAAAGCACATTTCATGATTCAAAGGCAGCCAAAAACATACTAAATCATGCACAAATTG
66 CATGAAACAAAGCACATTTCATGACCCAAAGGCAGCCAAAAACATACTAAATCATGCACAAATTG
84780039 ACCCATGATATCATCATTCATTCCCA
131 ACCCATGATATCATCATTCATTCCCA
84780065 TATAAAAATC
Statistics
Matches: 148, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
158 148 1.00
ACGTcount: A:0.38, C:0.26, G:0.13, T:0.23
Consensus pattern (158 bp):
CGTGTAGACAAAAATAGGCTACTTACAAAGCCAAATTGCCACCCATTTTGGACAATCCCTACAAG
CATGAAACAAAGCACATTTCATGACCCAAAGGCAGCCAAAAACATACTAAATCATGCACAAATTG
ACCCATGATATCATCATTCATTCCCACC
Found at i:84780950 original size:42 final size:42
Alignment explanation
Indices: 84780845--84780969 Score: 119
Period size: 43 Copynumber: 2.9 Consensus size: 42
84780835 AGAAAGCTCG
* * * *
84780845 TACGATGCCAAAGTCCCAGAC-GTGGTCTTACACGTAATAAAAT
1 TACGATGCC-ATGTCCCAGACAG-GGTCTTACATGAAATCAAAT
**
84780888 TTTGATGCCACTGTCCCAGACAGGGTCTTACATGAAATCAAA-
1 TACGATGCCA-TGTCCCAGACAGGGTCTTACATGAAATCAAAT
**
84780930 TACGATGCCGATGTCCCAGACATTGTCTTACATGTAAATC
1 TACGATGCC-ATGTCCCAGACAGGGTCTTACATG-AAATC
84780970 TCAAATCGAC
Statistics
Matches: 68, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
42 29 0.43
43 38 0.56
44 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.26
Consensus pattern (42 bp):
TACGATGCCATGTCCCAGACAGGGTCTTACATGAAATCAAAT
Found at i:84781000 original size:44 final size:42
Alignment explanation
Indices: 84780894--84781013 Score: 116
Period size: 44 Copynumber: 2.8 Consensus size: 42
84780884 AAATTTTGAT
* * ** *
84780894 GCCACTGTCCCAGACAGGGTCTTACATGAAATCAAATACGAT
1 GCCAATGTCCCAAACATTGTCTTACATGAAATCAAATACGAC
* *
84780936 GCCGATGTCCCAGACATTGTCTTACATGTAAATCTCAAAT-CGAC
1 GCCAATGTCCCAAACATTGTCTTACATG-AAA--TCAAATACGAC
* * *
84780980 GCCAATGTCCTAAACGTTGTCTTACACGAAATCA
1 GCCAATGTCCCAAACATTGTCTTACATGAAATCA
84781014 CATATCGGAC
Statistics
Matches: 65, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
41 3 0.05
42 24 0.37
43 6 0.09
44 26 0.40
45 6 0.09
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.25
Consensus pattern (42 bp):
GCCAATGTCCCAAACATTGTCTTACATGAAATCAAATACGAC
Found at i:84784216 original size:48 final size:49
Alignment explanation
Indices: 84784098--84784224 Score: 177
Period size: 49 Copynumber: 2.6 Consensus size: 49
84784088 GTTGTGTGTA
* * *
84784098 AGTGTAAGACCTGTCTGGGACGTGGCATCAACACCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAACC
*
84784147 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATATATGA-AACC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAGATGAGAACC
* *
84784195 AGTGTAAGACCTATCTGGGACACGGCATCG
1 AGTGTAAGACCTGTCTGGGACATGGCATCG
84784225 GCTTTAATGT
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
48 32 0.45
49 39 0.55
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.20
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAACC
Found at i:84791372 original size:46 final size:46
Alignment explanation
Indices: 84791290--84791407 Score: 130
Period size: 46 Copynumber: 2.5 Consensus size: 46
84791280 CATGAATGCC
* * *
84791290 AGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGACGAT-AGCT
1 AGTGTAAGACATGTCTAGGACATGCATAGGCATTGAGA-GATAAGCT
** *
84791336 AGTGTAAGACATGTCTAGGACATGCATAGGTTTTGAGATATACAAGCT
1 AGTGTAAGACATGTCTAGGACATGCATAGGCATTGAGAGAT--AAGCT
* *
84791384 AGTGTAAGACCTATCTAGGACATG
1 AGTGTAAGACATGTCTAGGACATG
84791408 GCGTCAGCTT
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
45 2 0.03
46 33 0.54
48 26 0.43
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.27
Consensus pattern (46 bp):
AGTGTAAGACATGTCTAGGACATGCATAGGCATTGAGAGATAAGCT
Found at i:84791498 original size:49 final size:44
Alignment explanation
Indices: 84791384--84791498 Score: 122
Period size: 44 Copynumber: 2.5 Consensus size: 44
84791374 TATACAAGCT
* * * *
84791384 AGTGTAAGACCTATCTAGGACATGGCGTCAGCTTGTTGTGTGTC
1 AGTGTAAGACCTATCTAGGACATGGCATCAGCTCGTTATGAGTC
** *
84791428 AGTGTAAGACCTGCCTGGGACATGGCATCAGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTATCTAGGACATGGCATCAG-CTCG-T-TATG--AGTC
84791477 AGTGTAAGACCTATCTAGGACA
1 AGTGTAAGACCTATCTAGGACA
84791499 CGACATTGAC
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
44 27 0.48
45 3 0.05
46 1 0.02
47 3 0.05
49 22 0.39
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (44 bp):
AGTGTAAGACCTATCTAGGACATGGCATCAGCTCGTTATGAGTC
Found at i:84817754 original size:27 final size:27
Alignment explanation
Indices: 84817701--84817763 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 27
84817691 ATAGGCGGTC
* * * * *
84817701 AACTATCCTGTGTTTATTTTTCTGACG
1 AACTACCCCGTGTTTATTGTCCCGACG
84817728 AACTACCCCGTGTTTATTGTCCCGACG
1 AACTACCCCGTGTTTATTGTCCCGACG
**
84817755 GGCTACCCC
1 AACTACCCC
84817764 TTATTTACTA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.17, C:0.30, G:0.17, T:0.35
Consensus pattern (27 bp):
AACTACCCCGTGTTTATTGTCCCGACG
Found at i:84819547 original size:46 final size:46
Alignment explanation
Indices: 84819482--84819705 Score: 215
Period size: 46 Copynumber: 4.8 Consensus size: 46
84819472 GGGCCATTTG
* * *
84819482 TGTGAGCTAATG-AAGGACATCTCTGGGACATGCATCGGCCAC-ATTA
1 TGTGAGCTAGTGTAA-GACATGTCTGGGACATGCATCGGCCACGA-GA
* *
84819528 TGTGAGCTAGTGTAAGACATATCTGGGACATGCATCGGCCTCGAGA
1 TGTGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGA
* * * *
84819574 TGTAAGCCAGTGTAAGACATGTCTGGGACATGCATTGGCTACGAGA
1 TGTGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGA
* * *
84819620 TGTG-TC-AGTGTAAGACCATGTCTGGGACATGGCATCGG-TACGGATA
1 TGTGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-GAGA
*
84819666 TGCGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
1 T--GTGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATC
84819706 AGCACCTTAC
Statistics
Matches: 153, Mismatches: 16, Indels: 14
0.84 0.09 0.08
Matches are distributed among these distances:
44 9 0.06
45 18 0.12
46 90 0.59
47 3 0.02
48 2 0.01
49 1 0.01
50 30 0.20
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
TGTGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGA
Found at i:84820589 original size:25 final size:25
Alignment explanation
Indices: 84820533--84820589 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
84820523 GTGTAGAGGA
* *
84820533 CACGGCCTGGTACACGGGCATGTAC
1 CACGGCCTAGTACACAGGCATGTAC
* * *
84820558 CATGGCCTAGTACACAGGCGTGTGC
1 CACGGCCTAGTACACAGGCATGTAC
84820583 CACGGCC
1 CACGGCC
84820590 GTGTGACATT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.19, C:0.33, G:0.32, T:0.16
Consensus pattern (25 bp):
CACGGCCTAGTACACAGGCATGTAC
Found at i:84827617 original size:20 final size:21
Alignment explanation
Indices: 84827594--84827635 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 21
84827584 GAAAAAAATC
84827594 AAATCCAA-ATTAA-AATACTG
1 AAATCCAAGA-TAAGAATACTG
*
84827614 AAATTCAAGATAAGAATACTG
1 AAATCCAAGATAAGAATACTG
84827635 A
1 A
84827636 TGTGGCATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.55, C:0.12, G:0.10, T:0.24
Consensus pattern (21 bp):
AAATCCAAGATAAGAATACTG
Found at i:84829365 original size:27 final size:26
Alignment explanation
Indices: 84829335--84829421 Score: 93
Period size: 27 Copynumber: 3.3 Consensus size: 26
84829325 AAATAATAAC
* *
84829335 TTTAAAAAAATTTAATATACAAAACAA
1 TTTAAAAAAA-ATAATATATAAAACAA
84829362 TTTAAAATAAAATAATATATAAAACAA
1 TTTAAAA-AAAATAATATATAAAACAA
* ** * *
84829389 TCTAAAATGACTAATTTATAAAACAA
1 TTTAAAAAAAATAATATATAAAACAA
84829415 TTTAAAA
1 TTTAAAA
84829422 TGGCGTATAA
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
26 21 0.41
27 27 0.53
28 3 0.06
ACGTcount: A:0.61, C:0.07, G:0.01, T:0.31
Consensus pattern (26 bp):
TTTAAAAAAAATAATATATAAAACAA
Found at i:84829410 original size:26 final size:26
Alignment explanation
Indices: 84829347--84829423 Score: 100
Period size: 26 Copynumber: 2.9 Consensus size: 26
84829337 TAAAAAAATT
* *
84829347 TAATATACAAAACAATTTAAAATAAAA
1 TAATATATAAAACAATTTAAAAT-GAA
* *
84829374 TAATATATAAAACAATCTAAAATGAC
1 TAATATATAAAACAATTTAAAATGAA
*
84829400 TAATTTATAAAACAATTTAAAATG
1 TAATATATAAAACAATTTAAAATG
84829424 GCGTATAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 23 0.52
27 21 0.48
ACGTcount: A:0.60, C:0.08, G:0.03, T:0.30
Consensus pattern (26 bp):
TAATATATAAAACAATTTAAAATGAA
Found at i:84829465 original size:26 final size:26
Alignment explanation
Indices: 84829430--84829486 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
84829420 AATGGCGTAT
* * *
84829430 AAAAGTTTAAACTAAATAATATGTAA
1 AAAATTTTAAAATAAATAATATATAA
*
84829456 AAAATTTTAAAATACATAATATATAA
1 AAAATTTTAAAATAAATAATATATAA
84829482 AAAAT
1 AAAAT
84829487 ATAAAACAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.32
Consensus pattern (26 bp):
AAAATTTTAAAATAAATAATATATAA
Found at i:84829649 original size:27 final size:28
Alignment explanation
Indices: 84829598--84829660 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 28
84829588 ATACACAAAG
*
84829598 ATTTAAAATAAATCACATATGAAAA-AA
1 ATTTAAAATAAATCACATATAAAAATAA
* * *
84829625 ATTTAAAATAAATGATATCTAAAAATAA
1 ATTTAAAATAAATCACATATAAAAATAA
84829653 A-TTAAAAT
1 ATTTAAAAT
84829661 GAATAATACA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 28 0.90
28 3 0.10
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (28 bp):
ATTTAAAATAAATCACATATAAAAATAA
Found at i:84829675 original size:27 final size:26
Alignment explanation
Indices: 84829574--84829668 Score: 68
Period size: 27 Copynumber: 3.6 Consensus size: 26
84829564 ATATAAAACT
* * * *
84829574 TTAAAATATATAATATAC-ACAAAGAT
1 TTAAAATAAATAATAT-CTAAAAAAAA
* *
84829600 TTAAAATAAATCACATAT-GAAAAAAAT
1 TTAAAATAAAT-A-ATATCTAAAAAAAA
*
84829627 TTAAAATAAATGATATCTAAAAATAAA
1 TTAAAATAAATAATATCTAAAAA-AAA
*
84829654 TTAAAATGAATAATA
1 TTAAAATAAATAATA
84829669 CATAAAATTT
Statistics
Matches: 56, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
25 4 0.07
26 15 0.27
27 33 0.59
28 4 0.07
ACGTcount: A:0.61, C:0.05, G:0.04, T:0.29
Consensus pattern (26 bp):
TTAAAATAAATAATATCTAAAAAAAA
Found at i:84830824 original size:21 final size:21
Alignment explanation
Indices: 84830800--84830861 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 21
84830790 TCGTAAATTA
84830800 TAAACTATAAACCTTAAACCC
1 TAAACTATAAACCTTAAACCC
* * *
84830821 TAAA-TATTAAACATTGAATCC
1 TAAACTA-TAAACCTTAAACCC
* *
84830842 TAAACCATAAAACCCTAAAC
1 TAAACTAT-AAACCTTAAAC
84830862 TATAGACAGT
Statistics
Matches: 30, Mismatches: 8, Indels: 5
0.70 0.19 0.12
Matches are distributed among these distances:
20 2 0.07
21 20 0.67
22 8 0.27
ACGTcount: A:0.50, C:0.24, G:0.02, T:0.24
Consensus pattern (21 bp):
TAAACTATAAACCTTAAACCC
Found at i:84830926 original size:21 final size:22
Alignment explanation
Indices: 84830902--84830995 Score: 68
Period size: 21 Copynumber: 4.4 Consensus size: 22
84830892 AATATAGATT
84830902 CCTAAATCATAAAACTATAAA-
1 CCTAAATCATAAAACTATAAAC
* * *
84830923 CCTAAATCACTAGACCT-TAAAT
1 CCTAAATCA-TAAAACTATAAAC
** * *
84830945 TATAAAACTTAAAACTATAAAC
1 CCTAAATCATAAAACTATAAAC
* * *
84830967 CTTAAATC-TTAAACCATAAAC
1 CCTAAATCATAAAACTATAAAC
84830988 CCTAAATC
1 CCTAAATC
84830996 CAAAACCATA
Statistics
Matches: 55, Mismatches: 15, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
21 36 0.65
22 19 0.35
ACGTcount: A:0.50, C:0.22, G:0.01, T:0.27
Consensus pattern (22 bp):
CCTAAATCATAAAACTATAAAC
Found at i:84830979 original size:14 final size:15
Alignment explanation
Indices: 84830911--84830986 Score: 70
Period size: 14 Copynumber: 5.3 Consensus size: 15
84830901 TCCTAAATCA
*
84830911 TAAAACTATAAACC-
1 TAAATCTATAAACCT
*
84830925 TAAATC-ACTAGACCT
1 TAAATCTA-TAAACCT
*
84830940 TAAAT-TATAAAACT
1 TAAATCTATAAACCT
*
84830954 TAAAACTATAAACCT
1 TAAATCTATAAACCT
*
84830969 TAAATCT-TAAACCA
1 TAAATCTATAAACCT
84830983 TAAA
1 TAAA
84830987 CCCTAAATCC
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
13 1 0.02
14 29 0.58
15 20 0.40
ACGTcount: A:0.53, C:0.18, G:0.01, T:0.28
Consensus pattern (15 bp):
TAAATCTATAAACCT
Found at i:84831001 original size:21 final size:21
Alignment explanation
Indices: 84830955--84831007 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
84830945 TATAAAACTT
* * *
84830955 AAAACTATAAACCTTAAATCT
1 AAAACCATAAACCCTAAATCC
*
84830976 TAAACCATAAACCCTAAATCC
1 AAAACCATAAACCCTAAATCC
84830997 AAAACCATAAA
1 AAAACCATAAA
84831008 ACCTTAGTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.55, C:0.25, G:0.00, T:0.21
Consensus pattern (21 bp):
AAAACCATAAACCCTAAATCC
Found at i:84831359 original size:3 final size:3
Alignment explanation
Indices: 84831351--84831382 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
84831341 ATTAATAGTA
84831351 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
84831383 AAGAGAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:84831753 original size:188 final size:187
Alignment explanation
Indices: 84831483--84831850 Score: 449
Period size: 188 Copynumber: 2.0 Consensus size: 187
84831473 TTGAAGCTAT
** *
84831483 GTTATTAGTGGCGCTTCTAAAAAACGTCACAAAACATCTATTAAGAGAATGTAAAACGGCGTCGT
1 GTTATTAGTGGCGCTTCTAAAAAACACCACAAAACATCTA-TAAGAGAATGTAAAACGGCATCGT
* * * ** *
84831548 TTACATCCCTCTTATTAGTGGCGCTTCTATAAACGCCGCAAAAGGTGTGATTTAC-TGACGTTTT
65 TTACATCCCTCTTATTAGTGGCGCTTCTATAAACACCACAAAAGATGTGAAATACAAG-CGTTTT
* * *
84831612 CACTAGAAAACGCCACAAACATCTATTAATAGATTG-TAAAACGGCGTCGTTAGTACCAA
129 CACTAG-AAACGCCACAAAAATCTATTAAAAGATTGCAAAAACGGCGTCGTTAGTACCAA
* *
84831671 GTTATTAGTGGCGCTTCTTAGAAAAACACCACAAAACATCTA-AAGAG-ATTTCAAAACGTCATC
1 GTTATTAGTGGCGCTTC-TA-AAAAACACCACAAAACATCTATAAGAGAATGT-AAAACGGCATC
* * * * *
84831734 GTTT-TATAGCCTTTTATTAGTGGCGCTTTTATAAACACCACAAAATATGTGAAATACAAGCGTT
63 GTTTACAT-CCCTCTTATTAGTGGCGCTTCTATAAACACCACAAAAGATGTGAAATACAAGCGTT
* *
84831798 TTCGCTAGAAACGCCACAAAAATCTATTAAAAGATTGCAAAAACTGCGTCGTT
127 TTCACTAGAAACGCCACAAAAATCTATTAAAAGATTGCAAAAACGGCGTCGTT
84831851 TGTAGCCTTT
Statistics
Matches: 153, Mismatches: 21, Indels: 12
0.82 0.11 0.06
Matches are distributed among these distances:
187 32 0.21
188 99 0.65
189 3 0.02
190 19 0.12
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.29
Consensus pattern (187 bp):
GTTATTAGTGGCGCTTCTAAAAAACACCACAAAACATCTATAAGAGAATGTAAAACGGCATCGTT
TACATCCCTCTTATTAGTGGCGCTTCTATAAACACCACAAAAGATGTGAAATACAAGCGTTTTCA
CTAGAAACGCCACAAAAATCTATTAAAAGATTGCAAAAACGGCGTCGTTAGTACCAA
Found at i:84834703 original size:24 final size:24
Alignment explanation
Indices: 84834676--84834722 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
84834666 ATTATTATTG
*
84834676 AAATATGCTCGTCCGTTTTATCAC
1 AAATATGATCGTCCGTTTTATCAC
*
84834700 AAATATTATCGTCCGTTTTATCA
1 AAATATGATCGTCCGTTTTATCA
84834723 TTTAAGTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.21, G:0.11, T:0.40
Consensus pattern (24 bp):
AAATATGATCGTCCGTTTTATCAC
Found at i:84834959 original size:15 final size:13
Alignment explanation
Indices: 84834941--84835043 Score: 52
Period size: 14 Copynumber: 7.8 Consensus size: 13
84834931 TCTTATTTTA
84834941 ATTAATATAATTTGG
1 ATTAAT-TAATTT-G
* *
84834956 ATTAATTTATTTA
1 ATTAATTAATTTG
*
84834969 ATT-ATT-ATTTA
1 ATTAATTAATTTG
84834980 ATTAATATAATTTGG
1 ATTAAT-TAATTT-G
* * *
84834995 ATTAATTTATGTA
1 ATTAATTAATTTG
* *
84835008 AAT-ATT-ATTTA
1 ATTAATTAATTTG
84835019 ATTAATATAATTTGG
1 ATTAAT-TAATTT-G
84835034 ATTAATTAAT
1 ATTAATTAAT
84835044 AATATAATTT
Statistics
Matches: 70, Mismatches: 10, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
11 14 0.20
12 10 0.14
13 7 0.10
14 21 0.30
15 18 0.26
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (13 bp):
ATTAATTAATTTG
Found at i:84834962 original size:19 final size:19
Alignment explanation
Indices: 84834938--84835062 Score: 112
Period size: 19 Copynumber: 6.3 Consensus size: 19
84834928 CAATCTTATT
84834938 TTAATTAATATAATTTGGA
1 TTAATTAATATAATTTGGA
* * *
84834957 TTAATTTATTTAATTAT-TA
1 TTAATTAATATAATT-TGGA
84834976 TTTAATTAATATAATTTGGA
1 -TTAATTAATATAATTTGGA
* *
84834996 TTAATTTATGTAAATATT--A
1 TTAATTAATAT-AAT-TTGGA
84835015 TTTAATTAATATAATTTGGA
1 -TTAATTAATATAATTTGGA
84835035 TTAATTAATAATATAATTTGGA
1 TTAA-T--TAATATAATTTGGA
84835057 TTAATT
1 TTAATT
84835063 TATTTAAATA
Statistics
Matches: 85, Mismatches: 10, Indels: 22
0.73 0.09 0.19
Matches are distributed among these distances:
18 2 0.02
19 33 0.39
20 29 0.34
21 3 0.04
22 18 0.21
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (19 bp):
TTAATTAATATAATTTGGA
Found at i:84834981 original size:39 final size:39
Alignment explanation
Indices: 84834937--84835040 Score: 190
Period size: 39 Copynumber: 2.7 Consensus size: 39
84834927 TCAATCTTAT
* *
84834937 TTTAATTAATATAATTTGGATTAATTTATTTAATTATTA
1 TTTAATTAATATAATTTGGATTAATTTATGTAAATATTA
84834976 TTTAATTAATATAATTTGGATTAATTTATGTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATGTAAATATTA
84835015 TTTAATTAATATAATTTGGATTAATT
1 TTTAATTAATATAATTTGGATTAATT
84835041 AATAATATAA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 63 1.00
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (39 bp):
TTTAATTAATATAATTTGGATTAATTTATGTAAATATTA
Found at i:84834982 original size:20 final size:20
Alignment explanation
Indices: 84834957--84835030 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 20
84834947 ATAATTTGGA
*
84834957 TTAATTTATTTAATTATTAT
1 TTAATTTATATAATTATTAT
* *
84834977 TTAATTAATATAATT-TGGA-
1 TTAATTTATATAATTAT-TAT
* *
84834996 TTAATTTATGTAAATATTAT
1 TTAATTTATATAATTATTAT
*
84835016 TTAATTAATATAATT
1 TTAATTTATATAATT
84835031 TGGATTAATT
Statistics
Matches: 41, Mismatches: 10, Indels: 6
0.72 0.18 0.11
Matches are distributed among these distances:
19 14 0.34
20 27 0.66
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (20 bp):
TTAATTTATATAATTATTAT
Found at i:84835031 original size:29 final size:28
Alignment explanation
Indices: 84834997--84835118 Score: 95
Period size: 29 Copynumber: 4.1 Consensus size: 28
84834987 TAATTTGGAT
84834997 TAATTTATGTAAATATTATTTAATTAATA
1 TAATTTAT-TAAATATTATTTAATTAATA
* * * *
84835026 TAATTTGGATTAATTAATAATATAATTTGGAT-
1 TAATTT--ATTAAAT-ATTATTTAA-TT-AATA
*
84835058 TAATTTATTTAAATATTATTAAATTAATA
1 TAATTTA-TTAAATATTATTTAATTAATA
*
84835087 TAACTTT-TATAAATATTATTTAATTAAAA
1 TAA-TTTAT-TAAATATTATTTAATTAATA
84835116 TAA
1 TAA
84835119 ATTTTTTTCC
Statistics
Matches: 73, Mismatches: 11, Indels: 18
0.72 0.11 0.18
Matches are distributed among these distances:
28 3 0.04
29 32 0.44
30 14 0.19
31 14 0.19
32 8 0.11
33 2 0.03
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.49
Consensus pattern (28 bp):
TAATTTATTAAATATTATTTAATTAATA
Found at i:84835058 original size:61 final size:62
Alignment explanation
Indices: 84834972--84835089 Score: 202
Period size: 61 Copynumber: 1.9 Consensus size: 62
84834962 TTATTTAATT
* *
84834972 ATTATTTAATTAATATAATTTGGATTAATTTATGTAAATATTATTTAATTAATATAATTTGG
1 ATTAATTAATTAATATAATTTGGATTAATTTATGTAAATATTATTAAATTAATATAATTTGG
*
84835034 ATTAATTAA-TAATATAATTTGGATTAATTTATTTAAATATTATTAAATTAATATAA
1 ATTAATTAATTAATATAATTTGGATTAATTTATGTAAATATTATTAAATTAATATAA
84835090 CTTTTATAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
61 45 0.85
62 8 0.15
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (62 bp):
ATTAATTAATTAATATAATTTGGATTAATTTATGTAAATATTATTAAATTAATATAATTTGG
Found at i:84835114 original size:15 final size:15
Alignment explanation
Indices: 84835060--84835114 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
84835050 ATTTGGATTA
*
84835060 ATTTATTTAAATATT
1 ATTTAATTAAATATT
* *
84835075 ATTAAATT-AATATA
1 ATTTAATTAAATATT
*
84835089 ACTTTTA-TAAATATT
1 A-TTTAATTAAATATT
84835104 ATTTAATTAAA
1 ATTTAATTAAA
84835115 ATAAATTTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
14 11 0.37
15 19 0.63
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (15 bp):
ATTTAATTAAATATT
Found at i:84835411 original size:9 final size:9
Alignment explanation
Indices: 84835397--84835631 Score: 293
Period size: 9 Copynumber: 26.7 Consensus size: 9
84835387 TATATACTTG
84835397 AACTTACAT
1 AACTTACAT
*
84835406 AACTTATAT
1 AACTTACAT
84835415 AACTTACAT
1 AACTTACAT
84835424 AACTTACAT
1 AACTTACAT
84835433 AACTTACAT
1 AACTTACAT
*
84835442 AACTCACAT
1 AACTTACAT
*
84835451 AACTCACAT
1 AACTTACAT
84835460 AACTTACAT
1 AACTTACAT
*
84835469 AACTTATAT
1 AACTTACAT
84835478 AACTTACAT
1 AACTTACAT
84835487 AACTTACAT
1 AACTTACAT
84835496 AACTTACAT
1 AACTTACAT
* *
84835505 AACTCATAT
1 AACTTACAT
84835514 AACTTACAT
1 AACTTACAT
84835523 AACTT--AT
1 AACTTACAT
*
84835530 -ATTTACAT
1 AACTTACAT
84835538 AACTTACAT
1 AACTTACAT
*
84835547 AACTCACAT
1 AACTTACAT
*
84835556 AACTTACAG
1 AACTTACAT
84835565 AACTTACAT
1 AACTTACAT
*
84835574 AATTTACAT
1 AACTTACAT
84835583 AACTTACAT
1 AACTTACAT
84835592 AA--TACAT
1 AACTTACAT
* *
84835599 AA-ATATAT
1 AACTTACAT
* *
84835607 ATCATATCAT
1 AACTTA-CAT
84835617 AACTTACAT
1 AACTTACAT
84835626 AACTTA
1 AACTTA
84835632 ATTAGAGTTA
Statistics
Matches: 197, Mismatches: 23, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
6 3 0.02
7 9 0.05
8 7 0.04
9 172 0.87
10 6 0.03
ACGTcount: A:0.45, C:0.20, G:0.00, T:0.34
Consensus pattern (9 bp):
AACTTACAT
Found at i:84840352 original size:49 final size:47
Alignment explanation
Indices: 84840131--84840489 Score: 540
Period size: 47 Copynumber: 7.6 Consensus size: 47
84840121 TCCTTCGGGA
* * * *
84840131 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGC
* *
84840178 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
84840225 CTCATCACATATAGACACTTTCACATTCATCACATCGGCTATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84840272 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84840319 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84840368 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84840415 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
84840464 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
84840490 CACAATTATC
Statistics
Matches: 285, Mismatches: 22, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
46 2 0.01
47 191 0.67
49 92 0.32
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:84840370 original size:96 final size:96
Alignment explanation
Indices: 84840131--84840489 Score: 555
Period size: 96 Copynumber: 3.8 Consensus size: 96
84840121 TCCTTCGGGA
* * * * * *
84840131 CTTATCACAT-T-TATACACTTTCACATCCATCACATTGGCCACTCAGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATAC
84840194 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
84840225 CTCATCAC--ATATAGACACTTTCACATTCATCACATCGGCTATTAAGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATAC
84840288 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
**
84840319 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATAC
*
84840384 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
84840415 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATAC
*
84840480 ACATTCACAT
66 ACTTTCACAT
84840490 CACAATTATC
Statistics
Matches: 243, Mismatches: 18, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
93 1 0.00
94 89 0.37
96 153 0.63
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:84843899 original size:29 final size:29
Alignment explanation
Indices: 84843866--84843929 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
84843856 CCAAATTAAA
84843866 CACCCCACTAAACCGA-CCACTAACTCCAT
1 CACCCCACTAAACC-ATCCACTAACTCCAT
* *
84843895 CACCCTACTAAACCATCCACTACCTCCAT
1 CACCCCACTAAACCATCCACTAACTCCAT
84843924 CACCCC
1 CACCCC
84843930 CACAACCTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
28 1 0.03
29 30 0.97
ACGTcount: A:0.31, C:0.52, G:0.02, T:0.16
Consensus pattern (29 bp):
CACCCCACTAAACCATCCACTAACTCCAT
Found at i:84843937 original size:18 final size:18
Alignment explanation
Indices: 84843911--84843983 Score: 67
Period size: 18 Copynumber: 4.0 Consensus size: 18
84843901 ACTAAACCAT
84843911 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
* * * *
84843929 CCACAACCTAC-TAAACCGT
1 CCACTACCTCCAT-CACC-C
* *
84843948 CCACTACCTCTATCACCG
1 CCACTACCTCCATCACCC
84843966 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
84843984 TACTTGTTAT
Statistics
Matches: 41, Mismatches: 11, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
17 1 0.02
18 28 0.68
19 11 0.27
20 1 0.02
ACGTcount: A:0.26, C:0.53, G:0.03, T:0.18
Consensus pattern (18 bp):
CCACTACCTCCATCACCC
Found at i:84843945 original size:37 final size:37
Alignment explanation
Indices: 84843898--84843974 Score: 118
Period size: 37 Copynumber: 2.1 Consensus size: 37
84843888 ACTCCATCAC
84843898 CCTACTAAACCATCCACTACCTCCATCACCCCCACAA
1 CCTACTAAACCATCCACTACCTCCATCACCCCCACAA
* * * *
84843935 CCTACTAAACCGTCCACTACCTCTATCACCGCCACTA
1 CCTACTAAACCATCCACTACCTCCATCACCCCCACAA
84843972 CCT
1 CCT
84843975 CCATCACCCT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.29, C:0.49, G:0.03, T:0.19
Consensus pattern (37 bp):
CCTACTAAACCATCCACTACCTCCATCACCCCCACAA
Found at i:84844420 original size:63 final size:62
Alignment explanation
Indices: 84844293--84844430 Score: 160
Period size: 62 Copynumber: 2.3 Consensus size: 62
84844283 TAACCCCTTT
* *
84844293 TTTA-TTTTTGTTATTTTACTGTTAAATTAATTAATTTGAGCTTTATTCTCATTATTTTTATA
1 TTTATTTTTTATTATTTTACTATTAAATTAATTAATTTGAGC-TTATTCTCATTATTTTTATA
* * * *
84844355 TTTGTTTTTTATTATTTT-CTATTAATTTAATTAATTTGAG-TTATGTTTCA-TATTATTATA
1 TTTATTTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTAT-TCTCATTATTTTTATA
84844415 -TTATTTATTTATTATT
1 TTTATTT-TTTATTATT
84844431 ATATATTTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
59 5 0.08
60 22 0.33
61 4 0.06
62 23 0.35
63 12 0.18
ACGTcount: A:0.26, C:0.04, G:0.06, T:0.64
Consensus pattern (62 bp):
TTTATTTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTATTCTCATTATTTTTATA
Found at i:84844429 original size:19 final size:18
Alignment explanation
Indices: 84844405--84844441 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
84844395 TTATGTTTCA
84844405 TATTATTATATTATTTATT
1 TATTATTATA-TATTTATT
84844424 TATTATTATATATTTATT
1 TATTATTATATATTTATT
84844442 ATGTAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTATTATATATTTATT
Found at i:84844453 original size:17 final size:14
Alignment explanation
Indices: 84844413--84844443 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
84844403 CATATTATTA
*
84844413 TATTATTTATTTAT
1 TATTATATATTTAT
84844427 TATTATATATTTAT
1 TATTATATATTTAT
84844441 TAT
1 TAT
84844444 GTAAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTATATATTTAT
Found at i:84844671 original size:21 final size:21
Alignment explanation
Indices: 84844638--84844688 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
84844628 TATTATCCCC
**
84844638 CATATTTAATGTTATCATCAA
1 CATATTTTTTGTTATCATCAA
* *
84844659 CATATTTTTTGTTATTATCAT
1 CATATTTTTTGTTATCATCAA
*
84844680 CATGTTTTT
1 CATATTTTT
84844689 AATATTATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.27, C:0.12, G:0.06, T:0.55
Consensus pattern (21 bp):
CATATTTTTTGTTATCATCAA
Found at i:84844773 original size:13 final size:12
Alignment explanation
Indices: 84844752--84844801 Score: 57
Period size: 13 Copynumber: 4.1 Consensus size: 12
84844742 ATTACTGTTG
84844752 TTTTATTAATTA
1 TTTTATTAATTA
84844764 TTTCTATTAATTA
1 TTT-TATTAATTA
*
84844777 CTATTATT-ATTA
1 -TTTTATTAATTA
*
84844789 TTTTATTATTTA
1 TTTTATTAATTA
84844801 T
1 T
84844802 ATATGGTTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
11 6 0.19
12 11 0.34
13 13 0.41
14 2 0.06
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (12 bp):
TTTTATTAATTA
Found at i:84845125 original size:126 final size:126
Alignment explanation
Indices: 84844900--84845143 Score: 425
Period size: 126 Copynumber: 1.9 Consensus size: 126
84844890 CATTGATCTT
** *
84844900 CTCTCAAATTTTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCATGCCCTA
1 CTCTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATGTAAAGAATTCGAAGAATCATGCCCTA
84844965 ACGTACTGGGTTTCGCTTTATTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
66 ACGTACTGGGTTTCGCTTTATTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
* *
84845026 CTCTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATGTAAAGAATTTGAAGAATCGTGCCCTA
1 CTCTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATGTAAAGAATTCGAAGAATCATGCCCTA
* *
84845091 ACGTACTGGGTTTCGCTTTCTTTGTTTGTTTTGAATATTCGAATATCCTCTTA
66 ACGTACTGGGTTTCGCTTTATTTGTTTGTCTTGAATATTCGAATATCCTCTTA
84845144 AGGCAAAAAT
Statistics
Matches: 111, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
126 111 1.00
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (126 bp):
CTCTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATGTAAAGAATTCGAAGAATCATGCCCTA
ACGTACTGGGTTTCGCTTTATTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
Found at i:84850994 original size:40 final size:40
Alignment explanation
Indices: 84850939--84851083 Score: 143
Period size: 39 Copynumber: 3.7 Consensus size: 40
84850929 ATTTGATGTG
*
84850939 TATCCGGGCTTAAAGACCCGCAGGTTATATGCTAGAATTA
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTAGAATTA
* *
84850979 TATCCGGGCTTAAAGACCTGCAGGCTATATGCTGGAATTA
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTAGAATTA
* ** * * *
84851019 TA-CTCGGACTT-AAGGTCCGCAAGCTATGTGCTGGAATTA
1 TATC-CGGGCTTAAAGACCCGCAGGCTATATGCTAGAATTA
* * **
84851058 TAACCGGACTT-AAGGTCCGCAGGCTA
1 TATCCGGGCTTAAAGACCCGCAGGCTA
84851084 CGGCCTGGAA
Statistics
Matches: 93, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 47 0.51
40 46 0.49
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTATATGCTAGAATTA
Found at i:84851092 original size:39 final size:39
Alignment explanation
Indices: 84851008--84851093 Score: 122
Period size: 39 Copynumber: 2.2 Consensus size: 39
84850998 GCAGGCTATA
*
84851008 TGCTGGAATTATACTCGGACTTAAGGTCCGCAAGCTATG
1 TGCTGGAATTATACTCGGACTTAAGGTCCGCAAGCTACG
*
84851047 TGCTGGAATTATAAC-CGGACTTAAGGTCCGCAGGCTACG
1 TGCTGGAATTAT-ACTCGGACTTAAGGTCCGCAAGCTACG
84851086 -GCCTGGAA
1 TG-CTGGAA
84851094 ATATGTCCGG
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
38 1 0.02
39 40 0.93
40 2 0.05
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
TGCTGGAATTATACTCGGACTTAAGGTCCGCAAGCTACG
Found at i:84854412 original size:64 final size:64
Alignment explanation
Indices: 84854336--84854505 Score: 164
Period size: 67 Copynumber: 2.6 Consensus size: 64
84854326 AGACATTATG
* *
84854336 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATATAGACAAAAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATATAGACAAAAGAGCTACGAGATAA
* * * * * * * *
84854400 ATGTAGCTAGGTCGCATGTGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATATAGACAAAAGAGCTACGAGAT
84854465 AA
63 AA
* * * *
84854467 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCAT
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCAT
84854506 GTGTACAAGA
Statistics
Matches: 83, Mismatches: 19, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
63 7 0.08
64 21 0.25
65 8 0.10
66 16 0.19
67 29 0.35
68 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATATAGACAAAAGAGCTACGAGATAA
Found at i:84858352 original size:45 final size:45
Alignment explanation
Indices: 84858301--84858398 Score: 160
Period size: 45 Copynumber: 2.2 Consensus size: 45
84858291 TACTGCTTAA
* *
84858301 GGAGACAAGATTCGTCGTCTTCGATCTATTTCACTGCAACTTCAG
1 GGAGACAAGATTCGCCGTCTTCGATCTATTCCACTGCAACTTCAG
*
84858346 GGAGACAAGATTCGCCGTCTTCGATCTATTCCATTGCAACTTCAG
1 GGAGACAAGATTCGCCGTCTTCGATCTATTCCACTGCAACTTCAG
*
84858391 TGAGACAA
1 GGAGACAA
84858399 AATCTAAAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (45 bp):
GGAGACAAGATTCGCCGTCTTCGATCTATTCCACTGCAACTTCAG
Found at i:84858367 original size:131 final size:131
Alignment explanation
Indices: 84857942--84858356 Score: 623
Period size: 131 Copynumber: 3.2 Consensus size: 131
84857932 AATCTGCTCT
* * *
84857942 TGCAACTTCAGGGAGACAAGATCTACAGTCCTCAGCCTACTCCACTACTGCTTAGGCAGATAGGA
1 TGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAGGAAGATAGGA
* * *
84858007 TGGTGGCCTAGATCTGCTCCACTACTGGTTAGGGAGACAAGATTCACCGTCTTCGATCTGTTCCA
66 TGGTGGCTTAAATCTGCTCCACTACTGGTTAGGGAGACAAGATTCGCCGTCTTCGATCTGTTCCA
84858072 C
131 C
* * *
84858073 TGCAACTTCAGGGAGACAAAATCTAAAATCTTCAGCCTACTCCACTACTTCTTAGGAAGATAGGA
1 TGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAGGAAGATAGGA
* *
84858138 TGGTGGCTTAAATCTGCTCCACTAGTGGTTAGGGAGACAAGATTCGCCGTCTTCAATCTGTTCCA
66 TGGTGGCTTAAATCTGCTCCACTACTGGTTAGGGAGACAAGATTCGCCGTCTTCGATCTGTTCCA
*
84858203 T
131 C
* * * **
84858204 TGTAACTTCAGGGAGACAAGCTCTGCAATCTTCAGCCTACTCCACTACTGCTTAGGGGGATAGGA
1 TGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAGGAAGATAGGA
* * * * * *
84858269 TGGTGGCTTAAATCCGCTCCACTACTGCTTAAGGAGACAAGATTCGTCGTCTTCGATCTATTTCA
66 TGGTGGCTTAAATCTGCTCCACTACTGGTTAGGGAGACAAGATTCGCCGTCTTCGATCTGTTCCA
84858334 C
131 C
84858335 TGCAACTTCAGGGAGACAAGAT
1 TGCAACTTCAGGGAGACAAGAT
84858357 TCGCCGTCTT
Statistics
Matches: 253, Mismatches: 31, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
131 253 1.00
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (131 bp):
TGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAGGAAGATAGGA
TGGTGGCTTAAATCTGCTCCACTACTGGTTAGGGAGACAAGATTCGCCGTCTTCGATCTGTTCCA
C
Found at i:84858380 original size:176 final size:176
Alignment explanation
Indices: 84858168--84858488 Score: 498
Period size: 176 Copynumber: 1.8 Consensus size: 176
84858158 ACTAGTGGTT
* * ** **
84858168 AGGGAGACAAGATTCGCCGTCTTCAATCTGTTCCATTGTAACTTCAGGGAGACAAGCTCTGCAAT
1 AGGGAGACAAGATTCGCCGTCTTCAATCTATTCCATTGCAACTTCAGGGAGACAAAATCTAAAAT
* * * *
84858233 CTTCAGCCTACTCCACTACTGCTTAGGGGGATAGGATGGTGGCTTAAATCCGCTCCACTACTGCT
66 CTTCAGCCTACTCCACTACTACTTAGGGAGATAGAATGGTGGCTTAAATACGCTCCACTACTGCT
84858298 TAAGGAGACAAGATTCGTCGTCTTCGATCTATTTCACTGCAACTTC
131 TAAGGAGACAAGATTCGTCGTCTTCGATCTATTTCACTGCAACTTC
* *
84858344 AGGGAGACAAGATTCGCCGTCTTCGATCTATTCCATTGCAACTTCAGTGAGACAAAATCTAAAAT
1 AGGGAGACAAGATTCGCCGTCTTCAATCTATTCCATTGCAACTTCAGGGAGACAAAATCTAAAAT
* * *
84858409 CTTTAGCCTACTCCACTACTACTTAGGGAGATAGAATGGTGGCTTAAATATGCTCCACTACTGGT
66 CTTCAGCCTACTCCACTACTACTTAGGGAGATAGAATGGTGGCTTAAATACGCTCCACTACTGCT
*
84858474 TAGGGAGACAAGATT
131 TAAGGAGACAAGATT
84858489 TTCCATCTTC
Statistics
Matches: 129, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
176 129 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.28
Consensus pattern (176 bp):
AGGGAGACAAGATTCGCCGTCTTCAATCTATTCCATTGCAACTTCAGGGAGACAAAATCTAAAAT
CTTCAGCCTACTCCACTACTACTTAGGGAGATAGAATGGTGGCTTAAATACGCTCCACTACTGCT
TAAGGAGACAAGATTCGTCGTCTTCGATCTATTTCACTGCAACTTC
Found at i:84858481 original size:131 final size:131
Alignment explanation
Indices: 84858344--84858660 Score: 436
Period size: 131 Copynumber: 2.4 Consensus size: 131
84858334 CTGCAACTTC
* *
84858344 AGGGAGACAAGATTCGCCGTCTTCGATCTATTCCATTGCAACTTCAGTGAGACAAAATCTAAAAT
1 AGGGAGACAAGATTCGCCGTCTTCGATCTATTCCACTGCAACTTCAGGGAGACAAAATCTAAAAT
* * *
84858409 CTTTAGCCTACTCCACTACTACTTAGGGAGATAGAATGGTGGCTTAAATATGCTCCACTACTGGT
66 CTTCAGCCTACTCCACTACTACTTAGGGAGATAGAATGGTGGCTTAAATACGCTCCACTACTGCT
84858474 T
131 T
** * * ** * * ** **
84858475 AGGGAGACAAGATTTTCCATCTTCGATCTGTTCTGCTGTAATTTCAGGGAGACAAGCTCTGCAAT
1 AGGGAGACAAGATTCGCCGTCTTCGATCTATTCCACTGCAACTTCAGGGAGACAAAATCTAAAAT
* * *
84858540 CTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCCGCTCCACTACTGCT
66 CTTCAGCCTACTCCACTACTACTTAGGGAGATAGAATGGTGGCTTAAATACGCTCCACTACTGCT
84858605 T
131 T
* *
84858606 AAGGAGACAAGATTCGCCGTCTTCGATCTATTTCACTGCAACTTCAGGGAGACAA
1 AGGGAGACAAGATTCGCCGTCTTCGATCTATTCCACTGCAACTTCAGGGAGACAA
84858661 GATTTGCTGT
Statistics
Matches: 156, Mismatches: 30, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
131 156 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.28
Consensus pattern (131 bp):
AGGGAGACAAGATTCGCCGTCTTCGATCTATTCCACTGCAACTTCAGGGAGACAAAATCTAAAAT
CTTCAGCCTACTCCACTACTACTTAGGGAGATAGAATGGTGGCTTAAATACGCTCCACTACTGCT
T
Found at i:84858500 original size:176 final size:176
Alignment explanation
Indices: 84858168--84858530 Score: 496
Period size: 176 Copynumber: 2.1 Consensus size: 176
84858158 ACTAGTGGTT
* * ** **
84858168 AGGGAGACAAGATTCGCCGTCTTCAATCTGTTCCATTGTAACTTCAGGGAGACAAGCTCTGCAAT
1 AGGGAGACAAGATTCGCCGTCTTCAATCTATTCCATTGCAACTTCAGGGAGACAAAATCTAAAAT
* * * *
84858233 CTTCAGCCTACTCCACTACTGCTTAGGGGGATAGGATGGTGGCTTAAATCCGCTCCACTACTGCT
66 CTTCAGCCTACTCCACTACTACTTAGGGAGATAGAATGGTGGCTTAAATACGCTCCACTACTGCT
* *
84858298 TAAGGAGACAAGATTCGTCGTCTTCGATCTATT-TCACTGCAACTTC
131 TAAGGAGACAAGATTCGTCATCTTCGATCTGTTCT-ACTGCAACTTC
* *
84858344 AGGGAGACAAGATTCGCCGTCTTCGATCTATTCCATTGCAACTTCAGTGAGACAAAATCTAAAAT
1 AGGGAGACAAGATTCGCCGTCTTCAATCTATTCCATTGCAACTTCAGGGAGACAAAATCTAAAAT
* * *
84858409 CTTTAGCCTACTCCACTACTACTTAGGGAGATAGAATGGTGGCTTAAATATGCTCCACTACTGGT
66 CTTCAGCCTACTCCACTACTACTTAGGGAGATAGAATGGTGGCTTAAATACGCTCCACTACTGCT
* * * * *
84858474 TAGGGAGACAAGATT-TTCCATCTTCGATCTGTTCTGCTGTAATTTC
131 TAAGGAGACAAGATTCGT-CATCTTCGATCTGTTCTACTGCAACTTC
84858520 AGGGAGACAAG
1 AGGGAGACAAG
84858531 CTCTGCAATC
Statistics
Matches: 163, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
175 1 0.01
176 161 0.99
177 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (176 bp):
AGGGAGACAAGATTCGCCGTCTTCAATCTATTCCATTGCAACTTCAGGGAGACAAAATCTAAAAT
CTTCAGCCTACTCCACTACTACTTAGGGAGATAGAATGGTGGCTTAAATACGCTCCACTACTGCT
TAAGGAGACAAGATTCGTCATCTTCGATCTGTTCTACTGCAACTTC
Found at i:84858591 original size:307 final size:307
Alignment explanation
Indices: 84858037--84858969 Score: 1463
Period size: 307 Copynumber: 3.0 Consensus size: 307
84858027 ACTACTGGTT
* * *
84858037 AGGGAGACAAGATTCACCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAAATCTAAAAT
1 AGGGAGACAAGATTCGCCGTCTTCGATCTATTCCACTGCAACTTCAGTGAGACAAAATCTAAAAT
* * * *
84858102 CTTCAGCCTACTCCACTACTTCTTAGGAAGATAGGATGGTGGCTTAAATCTGCTCCACTAGTGGT
66 CTTCAGCCTACTCCACTACTACTTAGGGAGATAGGATGGTGGCTTAAATATGCTCCACTACTGGT
* * * *
84858167 TAGGGAGACAAGATTCGCCGTCTTCAATCTGTTCCATTGTAACTTCAGGGAGACAAGCTCTGCAA
131 TAGGGAGACAAGATTCACCGTCTTCGATCTGTTCCACTGTAATTTCAGGGAGACAAGCTCTGCAA
*
84858232 TCTTCAGCCTACTCCACTACTGCTTAGGGGGATAGGATGGTGGCTTAAATCCGCTCCACTACTGC
196 TCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCCGCTCCACTACTGC
*
84858297 TTAAGGAGACAAGATTCGTCGTCTTCGATCTATTTCACTGCAACTTC
261 TTAAGGAGACAAGATTCGCCGTCTTCGATCTATTTCACTGCAACTTC
*
84858344 AGGGAGACAAGATTCGCCGTCTTCGATCTATTCCATTGCAACTTCAGTGAGACAAAATCTAAAAT
1 AGGGAGACAAGATTCGCCGTCTTCGATCTATTCCACTGCAACTTCAGTGAGACAAAATCTAAAAT
* *
84858409 CTTTAGCCTACTCCACTACTACTTAGGGAGATAGAATGGTGGCTTAAATATGCTCCACTACTGGT
66 CTTCAGCCTACTCCACTACTACTTAGGGAGATAGGATGGTGGCTTAAATATGCTCCACTACTGGT
** * **
84858474 TAGGGAGACAAGATTTTCCATCTTCGATCTGTTCTGCTGTAATTTCAGGGAGACAAGCTCTGCAA
131 TAGGGAGACAAGATTCACCGTCTTCGATCTGTTCCACTGTAATTTCAGGGAGACAAGCTCTGCAA
84858539 TCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCCGCTCCACTACTGC
196 TCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCCGCTCCACTACTGC
84858604 TTAAGGAGACAAGATTCGCCGTCTTCGATCTATTTCACTGCAACTTC
261 TTAAGGAGACAAGATTCGCCGTCTTCGATCTATTTCACTGCAACTTC
* * *
84858651 AGGGAGACAAGATTTGCTGTCTTCGATCTATTCCACTGCAACTTCAGTCAGACAAAATCTAAAAT
1 AGGGAGACAAGATTCGCCGTCTTCGATCTATTCCACTGCAACTTCAGTGAGACAAAATCTAAAAT
* * * * * *
84858716 CTTCAACCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCAT-AATACGCTTCACTACTGGA
66 CTTCAGCCTACTCCACTACTACTTAGGGAGATAGGATGGTGGCTTAAATATGCTCCACTACTGGT
* * * *
84858780 TAGGGAGACAAGATTCACCGTCTTCGATCTGCTCCACTGCAATTTCAGGGAGACAAGATCTACAA
131 TAGGGAGACAAGATTCACCGTCTTCGATCTGTTCCACTGTAATTTCAGGGAGACAAGCTCTGCAA
* * ** *
84858845 TCTTTAGTCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTATTGC
196 TCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCCGCTCCACTACTGC
* * * * *
84858910 TTAGGGAGACAAGATTTGCCGTCTTTGATCTGTTCCACTGCAACTTC
261 TTAAGGAGACAAGATTCGCCGTCTTCGATCTATTTCACTGCAACTTC
84858957 AGGGAGACAAGAT
1 AGGGAGACAAGAT
84858970 CTACAATCTT
Statistics
Matches: 575, Mismatches: 51, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
306 187 0.33
307 388 0.67
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (307 bp):
AGGGAGACAAGATTCGCCGTCTTCGATCTATTCCACTGCAACTTCAGTGAGACAAAATCTAAAAT
CTTCAGCCTACTCCACTACTACTTAGGGAGATAGGATGGTGGCTTAAATATGCTCCACTACTGGT
TAGGGAGACAAGATTCACCGTCTTCGATCTGTTCCACTGTAATTTCAGGGAGACAAGCTCTGCAA
TCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCCGCTCCACTACTGC
TTAAGGAGACAAGATTCGCCGTCTTCGATCTATTTCACTGCAACTTC
Found at i:84858657 original size:176 final size:175
Alignment explanation
Indices: 84858475--84858838 Score: 485
Period size: 176 Copynumber: 2.1 Consensus size: 175
84858465 ACTACTGGTT
* * ** * * * ** **
84858475 AGGGAGACAAGATTTTCCATCTTCGATCTGTTCTGCTGTAATTTCAGGGAGACAAGCTCTGCAAT
1 AGGGAGACAAGATTTGCCATCTTCGATCTATTCCACTGCAACTTCAGGCAGACAAAATCTAAAAT
* * * *
84858540 CTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCCGCTCCACTACTGCT
66 CTTCAACCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCAT-AATACGCTCCACTACTGCA
* * *
84858605 TAAGGAGACAAGATTCGCCGTCTTCGATCTATTTCACTGCAACTTC
130 TAAGGAGACAAGATTCACCGTCTTCGATCTACTCCACTGCAACTTC
** *
84858651 AGGGAGACAAGATTTGCTGTCTTCGATCTATTCCACTGCAACTTCAGTCAGACAAAATCTAAAAT
1 AGGGAGACAAGATTTGCCATCTTCGATCTATTCCACTGCAACTTCAGGCAGACAAAATCTAAAAT
* *
84858716 CTTCAACCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCATAATACGCTTCACTACTGGAT
66 CTTCAACCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCATAATACGCTCCACTACTGCAT
* * *
84858781 AGGGAGACAAGATTCACCGTCTTCGATCTGCTCCACTGCAATTTC
131 AAGGAGACAAGATTCACCGTCTTCGATCTACTCCACTGCAACTTC
84858826 AGGGAGACAAGAT
1 AGGGAGACAAGAT
84858839 CTACAATCTT
Statistics
Matches: 162, Mismatches: 26, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
175 68 0.42
176 94 0.58
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (175 bp):
AGGGAGACAAGATTTGCCATCTTCGATCTATTCCACTGCAACTTCAGGCAGACAAAATCTAAAAT
CTTCAACCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCATAATACGCTCCACTACTGCAT
AAGGAGACAAGATTCACCGTCTTCGATCTACTCCACTGCAACTTC
Found at i:84858659 original size:45 final size:45
Alignment explanation
Indices: 84858608--84858697 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
84858598 TACTGCTTAA
*
84858608 GGAGACAAGATTCGCCGTCTTCGATCTATTTCACTGCAACTTCAG
1 GGAGACAAGATTCGCCGTCTTCGATCTATTCCACTGCAACTTCAG
* *
84858653 GGAGACAAGATTTGCTGTCTTCGATCTATTCCACTGCAACTTCAG
1 GGAGACAAGATTCGCCGTCTTCGATCTATTCCACTGCAACTTCAG
84858698 TCAGACAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (45 bp):
GGAGACAAGATTCGCCGTCTTCGATCTATTCCACTGCAACTTCAG
Found at i:84858719 original size:45 final size:45
Alignment explanation
Indices: 84858625--84858719 Score: 109
Period size: 45 Copynumber: 2.1 Consensus size: 45
84858615 AGATTCGCCG
* * * * ****
84858625 TCTTCGATCTATTTCACTGCAACTTCAGGGAGACAAGATTTGCTG
1 TCTTCGATCTATTCCACTGCAACTTCAGGCAGACAAAATCTAAAA
*
84858670 TCTTCGATCTATTCCACTGCAACTTCAGTCAGACAAAATCTAAAA
1 TCTTCGATCTATTCCACTGCAACTTCAGGCAGACAAAATCTAAAA
84858715 TCTTC
1 TCTTC
84858720 AACCTACTCC
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (45 bp):
TCTTCGATCTATTCCACTGCAACTTCAGGCAGACAAAATCTAAAA
Found at i:84858935 original size:86 final size:86
Alignment explanation
Indices: 84858826--84859230 Score: 223
Period size: 86 Copynumber: 4.7 Consensus size: 86
84858816 CTGCAATTTC
* *
84858826 AGGGAGACAAGATCTACAATCTTTAGTCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTT
1 AGGGAGACAAGATCTACAGTCTTTAGTCTACTCCACTACTGCTTAGGGAGATAAGATGGTGGCTT
*
84858891 AAATCTACTCCACTATTGCTT
66 AAATCTACTCCACTACTGCTT
* * * ** * ** * * *
84858912 AGGGAGACAAGATTTGCCGTCTTT-GATCTGTTCCACTGCAACTTCAGGGAGACAAGAT-CT-AC
1 AGGGAGACAAGATCTACAGTCTTTAG-TCTACTCCACTACTGCTT-AGGGAGATAAGATGGTGGC
** *
84858974 AATCTTCAGCATACTCCACTACTGCTT
64 --T-TAAATC-TACTCCACTACTGCTT
* * * * * * * * * * * * * * *
84859001 AAGAAGATAGGATGGT---GGCTTAAATTTGCTCCACTTCTGGTTAGGGAGACAAGATTCGTCGT
1 AGGGAGACAAGAT-CTACAGTCTTTAGTCTACTCCACTACTGCTTAGGGAGATAAGA-TGGT-GG
** ** * **
84859063 CTTCGATCTGTTCCACTGCAACTTT
63 CTTAAATCTACTCCACTACTGC-TT
* ** *
84859088 AGGGAGACAAGATCTACAATCTTTAACCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTT
1 AGGGAGACAAGATCTACAGTCTTTAGTCTACTCCACTACTGCTTAGGGAGATAAGATGGTGGCTT
* *
84859153 AAATCTGCTCCACTACTGGTT
66 AAATCTACTCCACTACTGCTT
* *
84859174 AGGGAGACAAGATTTTTC-GTCTTT-GATCTACTCCACTACTGCTTAGGGAGATAAGAT
1 AGGGAGACAAGA-TCTACAGTCTTTAG-TCTACTCCACTACTGCTTAGGGAGATAAGAT
84859231 CTGTGAATTC
Statistics
Matches: 230, Mismatches: 71, Indels: 36
0.68 0.21 0.11
Matches are distributed among these distances:
85 2 0.01
86 104 0.45
87 62 0.27
88 8 0.03
89 52 0.23
90 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (86 bp):
AGGGAGACAAGATCTACAGTCTTTAGTCTACTCCACTACTGCTTAGGGAGATAAGATGGTGGCTT
AAATCTACTCCACTACTGCTT
Found at i:84859194 original size:131 final size:131
Alignment explanation
Indices: 84858651--84859202 Score: 784
Period size: 131 Copynumber: 4.2 Consensus size: 131
84858641 CTGCAACTTC
* * ** * *
84858651 AGGGAGACAAGATTTGCTGTCTTCGATCTATTCCACTGCAACTTCAGTCAGACAAAATCTAAAAT
1 AGGGAGACAAGATTTGCCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTACAAT
* *
84858716 CTTCAACCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCAT-AATAC-GCTTCACTACTGG
66 CTTCAACCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAAT-CTGCTCCACTACTGG
*
84858779 AT
130 TT
** * *
84858781 AGGGAGACAAGATTCACCGTCTTCGATCTGCTCCACTGCAATTTCAGGGAGACAAGATCTACAAT
1 AGGGAGACAAGATTTGCCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTACAAT
* ** * * *
84858846 CTTTAGTCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTATTGCT
66 CTTCAACCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGGT
84858911 T
131 T
*
84858912 AGGGAGACAAGATTTGCCGTCTTTGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTACAAT
1 AGGGAGACAAGATTTGCCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTACAAT
* * * * * *
84858977 CTTCAGCATACTCCACTACTGCTTAAGAAGATAGGATGGTGGCTTAAATTTGCTCCACTTCTGGT
66 CTTCAACCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGGT
84859042 T
131 T
* * *
84859043 AGGGAGACAAGATTCGTCGTCTTCGATCTGTTCCACTGCAACTTTAGGGAGACAAGATCTACAAT
1 AGGGAGACAAGATTTGCCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTACAAT
*
84859108 CTTTAACCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGGT
66 CTTCAACCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGGT
84859173 T
131 T
** *
84859174 AGGGAGACAAGATTTTTCGTCTTTGATCT
1 AGGGAGACAAGATTTGCCGTCTTCGATCT
84859203 ACTCCACTAC
Statistics
Matches: 372, Mismatches: 48, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
130 97 0.26
131 275 0.74
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (131 bp):
AGGGAGACAAGATTTGCCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTACAAT
CTTCAACCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGGT
T
Found at i:84859212 original size:44 final size:44
Alignment explanation
Indices: 84858770--84859230 Score: 192
Period size: 44 Copynumber: 10.5 Consensus size: 44
84858760 TAATACGCTT
** ** ** *
84858770 CACTACTGGATAGGGAGACAAGATTCACCGTCTTCGATCTGCTC
1 CACTACTGCTTAGGGAGACAAGATTCGTCGTCTTTAATCTACTC
* *** * *
84858814 CACTGCAATTTCAGGGAGACAAGA-TC-TACAATCTTTAGTCTACTC
1 CACTACTGCTT-AGGGAGACAAGATTCGT-C-GTCTTTAATCTACTC
* * * * *
84858859 CACTACTGCTTAGGGAGATAGGA-TGGT-GGCTTAAATCTACTC
1 CACTACTGCTTAGGGAGACAAGATTCGTCGTCTTTAATCTACTC
* * * * **
84858901 CACTATTGCTTAGGGAGACAAGATTTGCCGTCTTTGATCTGTTC
1 CACTACTGCTTAGGGAGACAAGATTCGTCGTCTTTAATCTACTC
* ** * * *
84858945 CACTGCAACTTCAGGGAGACAAGA-TC-TACAATC-TTCAGCATACTC
1 CACTACTGCTT-AGGGAGACAAGATTCGT-C-GTCTTTAATC-TACTC
* * * * * * * * *
84858990 CACTACTGCTTAAGAAGATAGGA-TGGT-GGCTTAAATTTGCTC
1 CACTACTGCTTAGGGAGACAAGATTCGTCGTCTTTAATCTACTC
* * ** **
84859032 CACTTCTGGTTAGGGAGACAAGATTCGTCGTCTTCGATCTGTTC
1 CACTACTGCTTAGGGAGACAAGATTCGTCGTCTTTAATCTACTC
* ** * *
84859076 CACTGCAACTTTAGGGAGACAAGA-TC-TACAATCTTTAACCTACTC
1 CACTACTGC-TTAGGGAGACAAGATTCGT-C-GTCTTTAATCTACTC
* * * * * *
84859121 CACTACTGCTTAGGGAGATAGGA-TGGT-GGCTTAAATCTGCTC
1 CACTACTGCTTAGGGAGACAAGATTCGTCGTCTTTAATCTACTC
* ** *
84859163 CACTACTGGTTAGGGAGACAAGATTTTTCGTCTTTGATCTACTC
1 CACTACTGCTTAGGGAGACAAGATTCGTCGTCTTTAATCTACTC
*
84859207 CACTACTGCTTAGGGAGATAAGAT
1 CACTACTGCTTAGGGAGACAAGAT
84859231 CTGTGAATTC
Statistics
Matches: 295, Mismatches: 102, Indels: 40
0.68 0.23 0.09
Matches are distributed among these distances:
42 83 0.28
43 10 0.03
44 116 0.39
45 86 0.29
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (44 bp):
CACTACTGCTTAGGGAGACAAGATTCGTCGTCTTTAATCTACTC
Found at i:84862230 original size:45 final size:45
Alignment explanation
Indices: 84862096--84862272 Score: 211
Period size: 45 Copynumber: 4.0 Consensus size: 45
84862086 ATTATCGTAC
*
84862096 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGA
1 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
*
84862141 GACACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
1 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
* * * *
84862186 GATATTATTCAGG-CTTTCGAGCCTAGCAGGCTATAATGCTGGTGA
1 GACACTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGA
** * *
84862231 -A-AGGATATCGGGCC-TCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 GACACTAT-TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
84862273 ATGAATTTGG
Statistics
Matches: 116, Mismatches: 13, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
42 10 0.09
43 17 0.15
44 10 0.09
45 79 0.68
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (45 bp):
GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
Found at i:84868815 original size:24 final size:25
Alignment explanation
Indices: 84868788--84868834 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
84868778 TTCACGATGC
*
84868788 AATGA-CATGAAATAAAAGTATAAT
1 AATGAGCATGAAACAAAAGTATAAT
*
84868812 AATGAGCATGGAACAAAAGTATA
1 AATGAGCATGAAACAAAAGTATA
84868835 TGAATACAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 5 0.25
25 15 0.75
ACGTcount: A:0.55, C:0.06, G:0.17, T:0.21
Consensus pattern (25 bp):
AATGAGCATGAAACAAAAGTATAAT
Found at i:84869142 original size:26 final size:26
Alignment explanation
Indices: 84869069--84869156 Score: 106
Period size: 26 Copynumber: 3.4 Consensus size: 26
84869059 ATAATAACTT
* *
84869069 TTTAAAA-AATTAATATACAAAACAA
1 TTTAAAATGATTAATATATAAAACAA
* *
84869094 TTTAAAATAAAATAATATATAAAACAA
1 TTTAAAAT-GATTAATATATAAAACAA
* *
84869121 TCTAAAATGATTAATTTATAAAACAA
1 TTTAAAATGATTAATATATAAAACAA
84869147 TTTAAAATGA
1 TTTAAAATGA
84869157 CGTATAAAAG
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
25 7 0.13
26 24 0.44
27 23 0.43
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.32
Consensus pattern (26 bp):
TTTAAAATGATTAATATATAAAACAA
Found at i:84869196 original size:25 final size:25
Alignment explanation
Indices: 84869168--84869216 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
84869158 GTATAAAAGT
* * *
84869168 TTAAACTAAATACTATGTAAAAAAA
1 TTAAAATAAATAATATATAAAAAAA
*
84869193 TTAAAATACATAATATATAAAAAA
1 TTAAAATAAATAATATATAAAAAA
84869217 TGTAAAACAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.63, C:0.06, G:0.02, T:0.29
Consensus pattern (25 bp):
TTAAAATAAATAATATATAAAAAAA
Found at i:84869385 original size:27 final size:27
Alignment explanation
Indices: 84869351--84869442 Score: 77
Period size: 27 Copynumber: 3.6 Consensus size: 27
84869341 TCACATATGG
84869351 AAAA-AATTTAAAATAAATGATATCTA
1 AAAATAATTTAAAATAAATGATATCTA
* *
84869377 AAAATAATTTAAAATGAATAATA-C-A
1 AAAATAATTTAAAATAAATGATATCTA
* * *
84869402 TAAAAT--TTTAAAGTAAATGATGTATA
1 -AAAATAATTTAAAATAAATGATATCTA
* *
84869428 AAAAGAGTTTAAAAT
1 AAAATAATTTAAAAT
84869443 GGTCATTATA
Statistics
Matches: 51, Mismatches: 9, Indels: 11
0.72 0.13 0.15
Matches are distributed among these distances:
24 12 0.24
25 5 0.10
26 11 0.22
27 23 0.45
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.32
Consensus pattern (27 bp):
AAAATAATTTAAAATAAATGATATCTA
Found at i:84878451 original size:45 final size:45
Alignment explanation
Indices: 84878346--84878565 Score: 322
Period size: 45 Copynumber: 5.0 Consensus size: 45
84878336 CCGAATTCAT
* * * * *
84878346 TCACCAGCATT-TCGCCTGCTAGGCTCGAA-GCCTG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATA
*
84878388 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
* *
84878433 TCACCGGTATTATCGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
*
84878478 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGTCCGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
84878523 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
84878566 CTGTACGATA
Statistics
Matches: 163, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
42 11 0.07
43 16 0.10
44 4 0.02
45 131 0.80
46 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
Found at i:84879132 original size:47 final size:47
Alignment explanation
Indices: 84879079--84879404 Score: 498
Period size: 47 Copynumber: 6.9 Consensus size: 47
84879069 ATTATTTTCT
* *
84879079 TTAACTAAGTAACTTATCAGGATATATTAAGAACAAATTTAACAAGC
1 TTAACTAAGTAACTTATCAGGAAATAGTAAGAACAAATTTAACAAGC
*
84879126 TTAACTAAGTAACTTATCCA-GAAATAGTAATAACAAATTTAACAAGC
1 TTAACTAAGTAACTTAT-CAGGAAATAGTAAGAACAAATTTAACAAGC
* *
84879173 TTAACTAAGTAACTTATCCGGAAATATTAAGAACAAATTTAACAAGC
1 TTAACTAAGTAACTTATCAGGAAATAGTAAGAACAAATTTAACAAGC
*
84879220 TTAACTAAGTAACTTATCCA-GAAATAGTAAGAACAAATTTAACACGC
1 TTAACTAAGTAACTTAT-CAGGAAATAGTAAGAACAAATTTAACAAGC
84879267 TTAACTAAGTAACTTATCCA-GAAATAGTAAGAACAAATTTAACAAGC
1 TTAACTAAGTAACTTAT-CAGGAAATAGTAAGAACAAATTTAACAAGC
* * * *
84879314 TTAACTTAGTAACTTATCCGGAAATATTAAGAATAAATTTAACAAGC
1 TTAACTAAGTAACTTATCAGGAAATAGTAAGAACAAATTTAACAAGC
84879361 TTAACTAAGTAACTTATTC-GGAAATAGTAAGAACAAATTTAACA
1 TTAACTAAGTAACTTA-TCAGGAAATAGTAAGAACAAATTTAACA
84879405 TCACTTCATC
Statistics
Matches: 257, Mismatches: 17, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
46 2 0.01
47 250 0.97
48 5 0.02
ACGTcount: A:0.47, C:0.14, G:0.10, T:0.28
Consensus pattern (47 bp):
TTAACTAAGTAACTTATCAGGAAATAGTAAGAACAAATTTAACAAGC
Found at i:84879333 original size:141 final size:140
Alignment explanation
Indices: 84879079--84879404 Score: 562
Period size: 141 Copynumber: 2.3 Consensus size: 140
84879069 ATTATTTTCT
* *
84879079 TTAACTAAGTAACTTATCAGGATATATTAAGAACAAATTTAACAAGCTTAACTAAGTAACTTATC
1 TTAACTAAGTAACTTATCA-GAAATAGTAAGAACAAATTTAACAAGCTTAACTAAGTAACTTATC
*
84879144 CAGAAATAGTAATAACAAATTTAACAAGCTTAACTAAGTAACTTATCCGGAAATATTAAGAACAA
65 CAGAAATAGTAAGAACAAATTTAACAAGCTTAACTAAGTAACTTATCCGGAAATATTAAGAACAA
84879209 ATTTAACAAGC
130 ATTTAACAAGC
*
84879220 TTAACTAAGTAACTTATCCAGAAATAGTAAGAACAAATTTAACACGCTTAACTAAGTAACTTATC
1 TTAACTAAGTAACTTAT-CAGAAATAGTAAGAACAAATTTAACAAGCTTAACTAAGTAACTTATC
* *
84879285 CAGAAATAGTAAGAACAAATTTAACAAGCTTAACTTAGTAACTTATCCGGAAATATTAAGAATAA
65 CAGAAATAGTAAGAACAAATTTAACAAGCTTAACTAAGTAACTTATCCGGAAATATTAAGAACAA
84879350 ATTTAACAAGC
130 ATTTAACAAGC
*
84879361 TTAACTAAGTAACTTATTCGGAAATAGTAAGAACAAATTTAACA
1 TTAACTAAGTAACTTA-TCAGAAATAGTAAGAACAAATTTAACA
84879405 TCACTTCATC
Statistics
Matches: 176, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
141 173 0.98
142 3 0.02
ACGTcount: A:0.47, C:0.14, G:0.10, T:0.28
Consensus pattern (140 bp):
TTAACTAAGTAACTTATCAGAAATAGTAAGAACAAATTTAACAAGCTTAACTAAGTAACTTATCC
AGAAATAGTAAGAACAAATTTAACAAGCTTAACTAAGTAACTTATCCGGAAATATTAAGAACAAA
TTTAACAAGC
Found at i:84883674 original size:44 final size:46
Alignment explanation
Indices: 84883600--84883718 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 46
84883590 ATGTTGATGC
*
84883600 CATGTCCC-GAACATGGTCTTACACTAGCTTA-A-CTCGTA-GCTGATG
1 CATGTCCCAG-ACAT-GTCTTACACTAGCTTACATCTCG-AGGCTGAAG
* * *
84883645 CATGTCCTAGACATGTCTTACTCTGGCTTACATCTCGAGGCTGAAG
1 CATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAGGCTGAAG
84883691 CATGTCCCAGACATGTCTTACACTAGCT
1 CATGTCCCAGACATGTCTTACACTAGCT
84883719 CTCGTCTCAC
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
44 14 0.22
45 13 0.21
46 36 0.57
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAGGCTGAAG
Found at i:84886556 original size:46 final size:46
Alignment explanation
Indices: 84886489--84886625 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
84886479 TATATATACA
* ** *
84886489 CATCTCATACATACCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* *
84886535 CATCTCATACACGTTTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* * *
84886581 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATAT
84886626 ATACGTGTTC
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.26, C:0.32, G:0.08, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:84886660 original size:47 final size:47
Alignment explanation
Indices: 84886599--84886887 Score: 398
Period size: 47 Copynumber: 6.1 Consensus size: 47
84886589 ACACATTTCG
* * *
84886599 CATTAGCCATTCGGCCTTACCACATATATACGTGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* *
84886646 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* * **
84886693 CATTGGCCATTCAGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* **
84886740 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
*
84886787 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ATATATACATGTTCACATTCATCA
* * *
84886838 CATTTGCCATTCGGCCTTATCTCATATATACATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
84886885 CAT
1 CAT
84886888 AAAACCCTAA
Statistics
Matches: 220, Mismatches: 18, Indels: 8
0.89 0.07 0.03
Matches are distributed among these distances:
47 178 0.81
49 2 0.01
51 40 0.18
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
Found at i:84888647 original size:39 final size:39
Alignment explanation
Indices: 84888530--84888791 Score: 320
Period size: 39 Copynumber: 6.6 Consensus size: 39
84888520 GCTCCTCGTT
* * *
84888530 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
84888570 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
84888610 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
84888649 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
84888688 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
84888727 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
84888768 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
84888792 CATCATTCAA
Statistics
Matches: 203, Mismatches: 12, Indels: 15
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 60 0.30
41 11 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:84893840 original size:40 final size:40
Alignment explanation
Indices: 84893796--84894126 Score: 511
Period size: 40 Copynumber: 8.3 Consensus size: 40
84893786 CGAGGTTTAA
* *
84893796 CCCGGATATATCACTAGCACGATTGCTCTTCGGGACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* *
84893836 CCCGGTTATATCACTAGCACGAATGCTCTTCGGCACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
84893876 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
*
84893916 CCCGGATATATCACTAGCACGAATGCTCTTCGAAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
*
84893956 CCCGGATATATCACTAGCACGAATGCTCTTCAGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* *
84893996 CCCGGATATATCACTAGAACGAATGCTCTCCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* * * * *
84894036 CCCGGACATATTACCAGCACGAATGCTCTTTGGGACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* *
84894076 CCCGGATATAACACCAGCACGAATGCTCTTC-GAGACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGA-ACTTAG
84894116 CCCGGATATAT
1 CCCGGATATAT
84894127 AACTCTCAAT
Statistics
Matches: 266, Mismatches: 24, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 1 0.00
40 265 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
Found at i:84894690 original size:14 final size:14
Alignment explanation
Indices: 84894671--84894697 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
84894661 CAGTAAATTT
84894671 TTTTTATTTTTTTA
1 TTTTTATTTTTTTA
84894685 TTTTTATTTTTTT
1 TTTTTATTTTTTT
84894698 GAAATAAGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (14 bp):
TTTTTATTTTTTTA
Found at i:84895686 original size:46 final size:45
Alignment explanation
Indices: 84895633--84895769 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 45
84895623 TATATATACA
* * * *
84895633 CATCTCATACATATCTCACATTAGCCATTTGGCTATACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCT-TACCACATATC
* *
84895679 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGC-TTACCACATATC
*
84895725 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGG-CTTACCACATAT
84895770 ATACATGTTC
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
46 78 0.98
47 2 0.03
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (45 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTACCACATATC
Found at i:84895804 original size:47 final size:47
Alignment explanation
Indices: 84895743--84896031 Score: 400
Period size: 47 Copynumber: 6.1 Consensus size: 47
84895733 ACACATTTCG
* *
84895743 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* *
84895790 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* *
84895837 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* **
84895884 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* *
84895931 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCATATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ATATATACATGTTCACATTCATCA
* **
84895982 CAATT-GCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 C-ATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
84896029 CAT
1 CAT
84896032 AAAATCCTAA
Statistics
Matches: 219, Mismatches: 18, Indels: 11
0.88 0.07 0.04
Matches are distributed among these distances:
46 2 0.01
47 176 0.80
49 2 0.01
51 36 0.16
52 3 0.01
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
Found at i:84896155 original size:67 final size:68
Alignment explanation
Indices: 84896073--84896210 Score: 269
Period size: 67 Copynumber: 2.0 Consensus size: 68
84896063 TATTCACATC
84896073 ACAATTATCCAAATATACTTCACATACCACATATACTTTCATGTATACACTTTGTCTTGGCTGGA
1 ACAATTATCCAAATATACTTCACATACCACATATACTTTCATGTATACACTTTGTCTTGGCTGGA
84896138 TCT
66 TCT
84896141 ACAA-TATCCAAATATACTTCACATACCACATATACTTTCATGTATACACTTTGTCTTGGCTGGA
1 ACAATTATCCAAATATACTTCACATACCACATATACTTTCATGTATACACTTTGTCTTGGCTGGA
84896205 TCT
66 TCT
84896208 ACA
1 ACA
84896211 TCTATCATTT
Statistics
Matches: 70, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
67 66 0.94
68 4 0.06
ACGTcount: A:0.32, C:0.24, G:0.09, T:0.36
Consensus pattern (68 bp):
ACAATTATCCAAATATACTTCACATACCACATATACTTTCATGTATACACTTTGTCTTGGCTGGA
TCT
Found at i:84908023 original size:17 final size:18
Alignment explanation
Indices: 84907981--84908023 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
84907971 ACCAAACATA
84907981 TACAAAATTTTTTGAAACT
1 TACAAAATTTTTT-AAACT
* *
84908000 TAAAAAATTTTTT-AAGT
1 TACAAAATTTTTTAAACT
84908017 TACAAAA
1 TACAAAA
84908024 GTCACACGCC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 9 0.43
19 12 0.57
ACGTcount: A:0.49, C:0.07, G:0.05, T:0.40
Consensus pattern (18 bp):
TACAAAATTTTTTAAACT
Found at i:84911565 original size:11 final size:10
Alignment explanation
Indices: 84911533--84911588 Score: 53
Period size: 11 Copynumber: 5.6 Consensus size: 10
84911523 CATGAGATTT
84911533 TGATAT-ACA
1 TGATATGACA
*
84911542 TGATTTGACA
1 TGATATGACA
84911552 TGATATGCACA
1 TGATATG-ACA
*
84911563 TGATATG-TA
1 TGATATGACA
*
84911572 TGAAATGCACA
1 TGATATG-ACA
84911583 TGATAT
1 TGATAT
84911589 ATTCATATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 12 0.32
10 9 0.24
11 16 0.43
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.34
Consensus pattern (10 bp):
TGATATGACA
Found at i:84911579 original size:20 final size:20
Alignment explanation
Indices: 84911551--84911588 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
84911541 ATGATTTGAC
*
84911551 ATGATATGCACATGATATGT
1 ATGAAATGCACATGATATGT
84911571 ATGAAATGCACATGATAT
1 ATGAAATGCACATGATAT
84911589 ATTCATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (20 bp):
ATGAAATGCACATGATATGT
Found at i:84918639 original size:11 final size:10
Alignment explanation
Indices: 84918607--84918662 Score: 53
Period size: 11 Copynumber: 5.6 Consensus size: 10
84918597 CATGAGATTT
84918607 TGATAT-ACA
1 TGATATGACA
*
84918616 TGATTTGACA
1 TGATATGACA
84918626 TGATATGCACA
1 TGATATG-ACA
*
84918637 TGATATG-TA
1 TGATATGACA
*
84918646 TGAAATGCACA
1 TGATATG-ACA
84918657 TGATAT
1 TGATAT
84918663 ATTCATTTAT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 12 0.32
10 9 0.24
11 16 0.43
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.34
Consensus pattern (10 bp):
TGATATGACA
Found at i:84918653 original size:20 final size:20
Alignment explanation
Indices: 84918625--84918662 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
84918615 ATGATTTGAC
*
84918625 ATGATATGCACATGATATGT
1 ATGAAATGCACATGATATGT
84918645 ATGAAATGCACATGATAT
1 ATGAAATGCACATGATAT
84918663 ATTCATTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (20 bp):
ATGAAATGCACATGATATGT
Found at i:84919868 original size:43 final size:43
Alignment explanation
Indices: 84919748--84919898 Score: 175
Period size: 43 Copynumber: 3.5 Consensus size: 43
84919738 TGTGTGATCG
* *
84919748 TGTAAGACCACGTCTGGGACGTTGCCATCGACT-TATGATTTACA
1 TGTAAGACCACGTCTGGGACG-TGACATCGA-TATTTGATTTACA
* * *
84919792 TGTAAGACCACGTCTGGGATGTCAGCATC-ATATTTGATTT-CG
1 TGTAAGACCACGTCTGGGACGTGA-CATCGATATTTGATTTACA
*
84919834 TGTAAGACCATGTCTGGGACAGTGACATCGATATTT-ATTTACA
1 TGTAAGACCACGTCTGGGAC-GTGACATCGATATTTGATTTACA
*
84919877 TGTAAGACCACGTATGGGACGT
1 TGTAAGACCACGTCTGGGACGT
84919899 AGGCATTGTA
Statistics
Matches: 91, Mismatches: 11, Indels: 12
0.80 0.10 0.11
Matches are distributed among these distances:
42 30 0.33
43 37 0.41
44 24 0.26
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTGACATCGATATTTGATTTACA
Found at i:84925100 original size:10 final size:10
Alignment explanation
Indices: 84925085--84925143 Score: 82
Period size: 10 Copynumber: 5.9 Consensus size: 10
84925075 TATTTTAGCT
84925085 TTTATCTTTA
1 TTTATCTTTA
*
84925095 TTTATCCTTA
1 TTTATCTTTA
*
84925105 ATTATCTTTA
1 TTTATCTTTA
*
84925115 ATTATCTTTA
1 TTTATCTTTA
*
84925125 TTTATCTGTA
1 TTTATCTTTA
84925135 TTTATCTTT
1 TTTATCTTT
84925144 TAGAATTTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 43 1.00
ACGTcount: A:0.22, C:0.12, G:0.02, T:0.64
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:84925120 original size:30 final size:30
Alignment explanation
Indices: 84925086--84925143 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
84925076 ATTTTAGCTT
84925086 TTATCTTTATTTATCCT-TAATTATCTTTAA
1 TTATCTTTATTTAT-CTGTAATTATCTTTAA
*
84925116 TTATCTTTATTTATCTGTATTTATCTTT
1 TTATCTTTATTTATCTGTAATTATCTTT
84925144 TAGAATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 2 0.08
30 24 0.92
ACGTcount: A:0.22, C:0.12, G:0.02, T:0.64
Consensus pattern (30 bp):
TTATCTTTATTTATCTGTAATTATCTTTAA
Found at i:84927284 original size:39 final size:38
Alignment explanation
Indices: 84927236--84927343 Score: 144
Period size: 39 Copynumber: 2.8 Consensus size: 38
84927226 GCTTAAAGAC
*
84927236 CCGCAGGCTATATGCTGGAATTATATCCAGACTTAAGGT
1 CCGCAGGCTATGTGCTGGAATTAT-TCCAGACTTAAGGT
**
84927275 CCGCAGGCTATGTGCTGGAATTATTACTGGACTTAAGGT
1 CCGCAGGCTATGTGCTGGAATTATT-CCAGACTTAAGGT
* *
84927314 CCGCAGGCTACGTGCTGGAAATATGTCCAG
1 CCGCAGGCTATGTGCTGGAATTAT-TCCAG
84927344 GCAAAAGTCC
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
38 1 0.02
39 58 0.97
40 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (38 bp):
CCGCAGGCTATGTGCTGGAATTATTCCAGACTTAAGGT
Found at i:84934360 original size:10 final size:10
Alignment explanation
Indices: 84934333--84934388 Score: 53
Period size: 10 Copynumber: 5.7 Consensus size: 10
84934323 CAACCCAATA
84934333 TTTATTT-AT
1 TTTATTTAAT
84934342 TTT-TCTTAAT
1 TTTAT-TTAAT
84934352 TTTATTTAAT
1 TTTATTTAAT
*
84934362 TTAATTTAAT
1 TTTATTTAAT
* * *
84934372 TTAATTTTAC
1 TTTATTTAAT
84934382 TTTATTT
1 TTTATTT
84934389 TATTATTTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
8 1 0.03
9 5 0.12
10 33 0.82
11 1 0.03
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTATTTAAT
Found at i:84934363 original size:5 final size:5
Alignment explanation
Indices: 84934347--84934378 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
84934337 TTTATTTTTC
*
84934347 TTAAT TTTAT TTAAT TTAAT TTAAT TTAAT TT
1 TTAAT TTAAT TTAAT TTAAT TTAAT TTAAT TT
84934379 TACTTTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (5 bp):
TTAAT
Found at i:84934365 original size:15 final size:15
Alignment explanation
Indices: 84934347--84934388 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
84934337 TTTATTTTTC
84934347 TTAATTTTATTTAAT
1 TTAATTTTATTTAAT
*
84934362 TTAATTTAATTTAAT
1 TTAATTTTATTTAAT
* *
84934377 TTTACTTTATTT
1 TTAATTTTATTT
84934389 TATTATTTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (15 bp):
TTAATTTTATTTAAT
Found at i:84936985 original size:49 final size:49
Alignment explanation
Indices: 84936925--84937428 Score: 748
Period size: 47 Copynumber: 10.6 Consensus size: 49
84936915 GATAATTGTG
* *
84936925 ATGTG-AA-TGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
84936972 ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
84937021 ATGTGCAAGTGTATATATATGTGATAAGGCCTAATGGCCGTTGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
84937070 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
84937119 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
84937166 ATGTGAAAGTG--TATATATGTGATAAGGCCAAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
84937213 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
84937262 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
84937309 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
84937356 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
84937403 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
84937429 TCCCGAAGGG
Statistics
Matches: 426, Mismatches: 25, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
47 234 0.55
48 3 0.01
49 189 0.44
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:84937245 original size:143 final size:143
Alignment explanation
Indices: 84936925--84937428 Score: 766
Period size: 143 Copynumber: 3.5 Consensus size: 143
84936915 GATAATTGTG
*
84936925 ATGTG-AA-TGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTG--TAT
* * *
84936988 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGCAAGTGTATATATATGTGATAAGGCCT
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
*
84937053 AATGGCCGTTGTGATGA
127 AATGGCCGATGTGATGA
*
84937070 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAA-GTGATGAATGTGAAAGTGTATA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCC-AACGTGATGAATGTGAAAGTGTATA
*
84937134 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAAT
65 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
84937199 AGCCGATGTGATGA
130 GGCCGATGTGATGA
* * *
84937213 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAT
* *
84937278 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
84937343 GCCGATGTGATGA
131 GCCGATGTGATGA
* * * * *
84937356 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAT
84937419 ATGTGATAAG
66 ATGTGATAAG
84937429 TCCCGAAGGG
Statistics
Matches: 335, Mismatches: 20, Indels: 12
0.91 0.05 0.03
Matches are distributed among these distances:
141 54 0.16
142 1 0.00
143 180 0.54
145 49 0.15
146 2 0.01
147 47 0.14
148 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
GCCGATGTGATGA
Found at i:84939712 original size:40 final size:40
Alignment explanation
Indices: 84939653--84939973 Score: 421
Period size: 40 Copynumber: 8.1 Consensus size: 40
84939643 AGGTCTCGAC
84939653 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
84939692 AATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * *
84939732 GATGTACCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
84939772 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
84939812 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTACTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
84939852 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * * * * *
84939892 AATATATCTGTGCTAA-ACCTCGAAGAGCATCCGTGCTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCATGCTAGT
* * * * *
84939932 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
84939972 GA
1 GA
84939974 CGTGTATTCG
Statistics
Matches: 245, Mismatches: 34, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
39 4 0.02
40 239 0.98
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:84942679 original size:49 final size:49
Alignment explanation
Indices: 84942609--84943112 Score: 757
Period size: 47 Copynumber: 10.6 Consensus size: 49
84942599 GATAATTGTG
* *
84942609 ATGTG-AA-TGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
84942656 ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
84942705 ATGTGCAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
84942754 ATGTGAAAGTGTATATATATGTGACAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
84942803 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
84942850 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
84942897 ATGTGAAAGTGTATATATATGTGATAAGGCGTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
84942946 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
84942993 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
84943040 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
84943087 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
84943113 TCCCGAAGGG
Statistics
Matches: 428, Mismatches: 23, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
47 234 0.55
48 3 0.01
49 191 0.45
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:84942911 original size:143 final size:143
Alignment explanation
Indices: 84942609--84943112 Score: 784
Period size: 143 Copynumber: 3.5 Consensus size: 143
84942599 GATAATTGTG
*
84942609 ATGTG-AA-TGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TAT
* * *
84942672 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGCAAGTGTATATATATGTGATAAGGCCT
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
84942737 AATGGCCGATGTGATGA
127 AATGGCCGATGTGATGA
* *
84942754 ATGTGAAAGTGTATATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
*
84942819 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
84942884 GCCGATGTGATGA
131 GCCGATGTGATGA
* *
84942897 ATGTGAAAGTGTATATATATGTGATAAGG-CGTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 ATGTGAAAGTGTATATATATGTGACAAGGCCG-AATGGCCAATGTGATGAATGTGAAAGTGTATA
* *
84942961 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAAT
65 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
84943026 GGCCGATGTGATGA
130 GGCCGATGTGATGA
* * * * *
84943040 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAA
1 ATGTGAAAGTGTATATATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
84943103 ATGTGATAAG
66 ATGTGATAAG
84943113 TCCCGAAGGG
Statistics
Matches: 336, Mismatches: 19, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
141 52 0.15
142 3 0.01
143 182 0.54
145 49 0.15
146 2 0.01
147 48 0.14
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
GCCGATGTGATGA
Found at i:84946766 original size:13 final size:13
Alignment explanation
Indices: 84946748--84946772 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
84946738 GTTTATTAAA
84946748 CTAATTAACTAAG
1 CTAATTAACTAAG
84946761 CTAATTAACTAA
1 CTAATTAACTAA
84946773 TTAAACTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.04, T:0.32
Consensus pattern (13 bp):
CTAATTAACTAAG
Found at i:84950164 original size:22 final size:22
Alignment explanation
Indices: 84950133--84950193 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 22
84950123 AATACGATTT
*
84950133 GCACAAAGCCATAATCAAAATA
1 GCACAGAGCCATAATCAAAATA
* *** *
84950155 GCACAGAGCCATAATTAGGTTG
1 GCACAGAGCCATAATCAAAATA
84950177 GCACAGAGCCATAATCA
1 GCACAGAGCCATAATCA
84950194 GATTAAGTAG
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.43, C:0.23, G:0.18, T:0.16
Consensus pattern (22 bp):
GCACAGAGCCATAATCAAAATA
Found at i:84951913 original size:25 final size:24
Alignment explanation
Indices: 84951867--84951917 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
84951857 CAAACTCTAT
84951867 TCAAACTCTCATGACCAATTCAACC
1 TCAAACTCTCATGACCAATTC-ACC
* *
84951892 TCAAAGTCTCA-GTCCAACTTCACC
1 TCAAACTCTCATGACCAA-TTCACC
84951916 TC
1 TC
84951918 CTACATAGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 10 0.43
25 13 0.57
ACGTcount: A:0.31, C:0.37, G:0.06, T:0.25
Consensus pattern (24 bp):
TCAAACTCTCATGACCAATTCACC
Found at i:84957379 original size:28 final size:28
Alignment explanation
Indices: 84957347--84957461 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 28
84957337 TACCTGTATC
* *
84957347 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
* *
84957375 TGGCCCATTAGGCCTAAATCACCTGT-ATA
1 TGGCCCATTAGGCC-CAATCACAT-TCATA
*
84957404 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* * *
84957433 TAGCCCATTAGGCCTAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
84957461 T
1 T
84957462 TCATGCTCAA
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
28 26 0.36
29 46 0.63
30 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:84957408 original size:57 final size:58
Alignment explanation
Indices: 84957338--84957448 Score: 170
Period size: 58 Copynumber: 1.9 Consensus size: 58
84957328 AAATTCACAT
* * *
84957338 ACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCTAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATAGCCCATTAGGCCTAAATC
* *
84957395 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATAGCCCATTAGGCCTA
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATAGCCCATTAGGCCTA
84957449 GTCACATTCA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 22 0.46
58 26 0.54
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATAGCCCATTAGGCCTAAATC
Found at i:84957695 original size:16 final size:15
Alignment explanation
Indices: 84957671--84957720 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 15
84957661 GTTGCCAAAC
84957671 TTTCGGCTTTTGGGCA
1 TTTCGGCTTTT-GGCA
* *
84957687 TTTCAGCTTTTCGACA
1 TTTCGGCTTTT-GGCA
*
84957703 TTTCGGCATTTGGCA
1 TTTCGGCTTTTGGCA
84957718 TTT
1 TTT
84957721 GCTGATTCAT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
15 6 0.21
16 22 0.79
ACGTcount: A:0.12, C:0.20, G:0.22, T:0.46
Consensus pattern (15 bp):
TTTCGGCTTTTGGCA
Found at i:84959585 original size:40 final size:40
Alignment explanation
Indices: 84959391--84959581 Score: 294
Period size: 40 Copynumber: 4.8 Consensus size: 40
84959381 ATAACCACAA
** *
84959391 GCACAAATGCCCACGGGTCTTAGCCCGGATATGTCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
84959431 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
84959471 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
84959511 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * *
84959551 GCACAATTGCCTTCGAGACTTAGCCCGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
84959582 AAATTCAAAT
Statistics
Matches: 142, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 1 0.01
40 137 0.96
41 4 0.03
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:84967015 original size:28 final size:29
Alignment explanation
Indices: 84966973--84967087 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
84966963 TACCTGTATC
* *
84966973 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
84967001 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
* *
84967030 TGGCCCATTGGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* * *
84967059 TGGCTCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
84967087 T
1 T
84967088 TCATGCTCAC
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 27 0.36
29 46 0.62
30 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:84967027 original size:57 final size:58
Alignment explanation
Indices: 84966964--84967074 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 58
84966954 AAATTCACAT
* *
84966964 ACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
** * * *
84967021 ACCTGTATATGGCCCATTGGGCCCAAATCACATTTATATGGCTCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCA
84967075 GTCACATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 21 0.46
58 25 0.54
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:84967325 original size:24 final size:24
Alignment explanation
Indices: 84967298--84967357 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
84967288 GTAGCCATAC
*
84967298 TTTCGACTTTTCAGCTTTTCGGCA
1 TTTCGACTTTTCAGCATTTCGGCA
* *
84967322 TTTCGACTTTTCGGCATTTCGGTA
1 TTTCGACTTTTCAGCATTTCGGCA
84967346 TTTC-AGCTTTTC
1 TTTCGA-CTTTTC
84967358 TTGATTCATA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
23 1 0.03
24 31 0.97
ACGTcount: A:0.12, C:0.23, G:0.17, T:0.48
Consensus pattern (24 bp):
TTTCGACTTTTCAGCATTTCGGCA
Found at i:84967349 original size:16 final size:16
Alignment explanation
Indices: 84967312--84967342 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
84967302 GACTTTTCAG
84967312 CTTTTCGGCATTTCGA
1 CTTTTCGGCATTTCGA
84967328 CTTTTCGGCATTTCG
1 CTTTTCGGCATTTCG
84967343 GTATTTCAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.10, C:0.26, G:0.19, T:0.45
Consensus pattern (16 bp):
CTTTTCGGCATTTCGA
Found at i:84973942 original size:27 final size:27
Alignment explanation
Indices: 84973912--84974009 Score: 99
Period size: 27 Copynumber: 3.6 Consensus size: 27
84973902 TTAGTTTACC
*
84973912 AAATTACCAAAATACCC-CTGATTTGTA
1 AAATTACCAAAATACCCTC-GACTTGTA
** *
84973939 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGACTTGTA
** * *
84973966 AAATTATTAAAATACCTTCGACTTCTA
1 AAATTACCAAAATACCCTCGACTTGTA
*
84973993 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
84974010 CTGATTTACA
Statistics
Matches: 57, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
27 56 0.98
28 1 0.02
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGACTTGTA
Found at i:84974062 original size:27 final size:27
Alignment explanation
Indices: 84973906--84974064 Score: 83
Period size: 27 Copynumber: 5.9 Consensus size: 27
84973896 AATATTTTAG
* *
84973906 TTTACCAAATTACCAAAATACCC-CTGA
1 TTTACAAAATTATCAAAATACCCTC-GA
** *
84973933 TTTGTAAAATTA-CTGAAATACCCTCGA
1 TTTACAAAATTATC-AAAATACCCTCGA
** ** * *
84973960 CCTGTAAAATTATTAAAATACCTTCGA
1 TTTACAAAATTATCAAAATACCCTCGA
* * *
84973987 CTT-CTAAAATTACCAAAGTACCC-CTGA
1 TTTAC-AAAATTATCAAAATACCCTC-GA
* ***
84974014 TTTACAGAATTATCATTTTACCCTCGA
1 TTTACAAAATTATCAAAATACCCTCGA
*
84974041 TTTACAAAATTATCGAAATACCCT
1 TTTACAAAATTATCAAAATACCCT
84974065 TGTAGGGAAG
Statistics
Matches: 99, Mismatches: 26, Indels: 14
0.71 0.19 0.10
Matches are distributed among these distances:
26 2 0.02
27 94 0.95
28 3 0.03
ACGTcount: A:0.38, C:0.23, G:0.07, T:0.32
Consensus pattern (27 bp):
TTTACAAAATTATCAAAATACCCTCGA
Found at i:84974078 original size:27 final size:27
Alignment explanation
Indices: 84974055--84974486 Score: 549
Period size: 27 Copynumber: 16.0 Consensus size: 27
84974045 CAAAATTATC
* *
84974055 GAAATACCCTTGTAGGGAAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * *
84974082 GAAATACCCATTGTAGGGTAGAAATACC
1 GAAATACCC-CTGTAGGGTAGAATTACT
*
84974110 GAAAAACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * * *
84974137 AAAATACACATGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
* * * *
84974164 GAAATACCCTTGTAGGATAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACT
84974191 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* *
84974218 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
* *
84974245 GAAATACCCTTGTAGGGTAGAAATACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* *
84974272 GAAATACCCCTGTACGATAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* *
84974299 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
* *
84974326 GAAATACCCTTGTAGGGTAGAAGTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
*
84974353 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
* * *
84974380 GAGATACCCTTGTAGGGTAGAAGTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
*
84974407 GAAGTACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
*
84974434 AAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * * *
84974461 GAGATACCCTTGTGGGGTAAAATTAC
1 GAAATACCCCTGTAGGGTAGAATTAC
84974487 CATTTTACGT
Statistics
Matches: 347, Mismatches: 57, Indels: 2
0.85 0.14 0.00
Matches are distributed among these distances:
27 324 0.93
28 23 0.07
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACT
Found at i:84974209 original size:81 final size:81
Alignment explanation
Indices: 84974056--84974487 Score: 621
Period size: 81 Copynumber: 5.3 Consensus size: 81
84974046 AAAATTATCG
* * * *
84974056 AAATACCCTTGTAGGGAAGAATTACTGAAATACCCATTGTAGGGTAGAAATACCGAAAAACCCCT
1 AAATACCCTTGTAGGGTAGAATTACCGAAATACCC-TTGTAGGGTAGAAATACTGAAATACCCCT
84974121 GTAGGGTAGAATTACTA
65 GTAGGGTAGAATTACTA
* * * *
84974138 AAATACACATGTAGGGTAGAATTACCGAAATACCCTTGTAGGATAGAAATACCGAAATACCCCTG
1 AAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTG
84974203 TAGGGTAGAATTACTA
66 TAGGGTAGAATTACTA
*
84974219 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTG
1 AAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTG
* *
84974284 TACGATAGAATTACTA
66 TAGGGTAGAATTACTA
* *
84974300 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAGTACTGAAATACCCCTG
1 AAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTG
**
84974365 TAGGGTAGAATTACCG
66 TAGGGTAGAATTACTA
* * * * * * *
84974381 AGATACCCTTGTAGGGTAGAAGTACTGAAGTACCCCTGTAGGGTAGAATTACTAAAATACCCCTG
1 AAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTG
*
84974446 TAGGGTAGAATTACTG
66 TAGGGTAGAATTACTA
* * *
84974462 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCTTGTAGGGTAGAATTACC
84974488 ATTTTACGTG
Statistics
Matches: 320, Mismatches: 30, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
81 289 0.90
82 31 0.10
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (81 bp):
AAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTG
TAGGGTAGAATTACTA
Found at i:84975027 original size:19 final size:19
Alignment explanation
Indices: 84975021--84975080 Score: 88
Period size: 19 Copynumber: 3.2 Consensus size: 19
84975011 TTACCTGATA
84975021 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
*
84975040 CTAATTCTGATTCTGGTT--
1 CTGATTCTGATTCT-GTTAC
84975058 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
84975077 CTGA
1 CTGA
84975081 CACTGACACT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
17 3 0.08
18 13 0.36
19 17 0.47
20 3 0.08
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.47
Consensus pattern (19 bp):
CTGATTCTGATTCTGTTAC
Done.