Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 258 of 333
Found at i:84975028 original size:31 final size:30
Alignment explanation
Indices: 84974993--84975086 Score: 84
Period size: 31 Copynumber: 3.0 Consensus size: 30
84974983 TTGCATGCAC
84974993 ATTCTGATTCTAATTCTGTTACCTGATACTG
1 ATTCTGATTCT-ATTCTGTTACCTGATACTG
* * *
84975024 ATTCTGATTCTGTTACCTAATT--CTGATTCTG
1 ATTCTGATTCTATT--CT-GTTACCTGATACTG
* *
84975055 GTTCTGATTCTGATTCTGTTACCTGACACTG
1 ATTCTGATTCT-ATTCTGTTACCTGATACTG
84975086 A
1 A
84975087 CACTAATTCT
Statistics
Matches: 48, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
29 2 0.04
30 4 0.08
31 36 0.75
32 4 0.08
33 2 0.04
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.45
Consensus pattern (30 bp):
ATTCTGATTCTATTCTGTTACCTGATACTG
Found at i:84975032 original size:6 final size:6
Alignment explanation
Indices: 84974993--84975072 Score: 74
Period size: 6 Copynumber: 13.0 Consensus size: 6
84974983 TTGCATGCAC
* * *
84974993 ATTCTG ATTCTA ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
*
84975043 ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
84975073 TTACCTGACA
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
5 4 0.07
6 48 0.80
7 5 0.08
8 3 0.05
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:84975054 original size:25 final size:25
Alignment explanation
Indices: 84974993--84975060 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
84974983 TTGCATGCAC
* *
84974993 ATTCTGATTCTAATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTTACCTA
*
84975018 ATACTGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTA
*
84975043 ATTCTGATTCTGGTTCTG
1 ATTCTGATTCTGATTCTG
84975061 ATTCTGATTC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACCTA
Found at i:84975097 original size:37 final size:37
Alignment explanation
Indices: 84975021--84975097 Score: 91
Period size: 37 Copynumber: 2.1 Consensus size: 37
84975011 TTACCTGATA
** ** **
84975021 CTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTT
1 CTGATTCTGATTCTGTTACCTAACACTGACACTAATT
*
84975058 CTGATTCTGATTCTGTTACCTGACACTGACACTAATT
1 CTGATTCTGATTCTGTTACCTAACACTGACACTAATT
84975095 CTG
1 CTG
84975098 TTACCTAATT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.43
Consensus pattern (37 bp):
CTGATTCTGATTCTGTTACCTAACACTGACACTAATT
Found at i:84975156 original size:12 final size:12
Alignment explanation
Indices: 84975111--84975176 Score: 62
Period size: 12 Copynumber: 5.4 Consensus size: 12
84975101 CCTAATTCTA
84975111 ATTCTGATTTTG
1 ATTCTGATTTTG
*
84975123 ATTTTGATTTTG
1 ATTCTGATTTTG
*
84975135 -TCACCTGATTTTG
1 AT--TCTGATTTTG
* *
84975148 ATTCTGATTCTA
1 ATTCTGATTTTG
*
84975160 ATTCTCATTTTG
1 ATTCTGATTTTG
84975172 ATTCT
1 ATTCT
84975177 AGTTCTGATA
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
11 1 0.02
12 32 0.76
13 8 0.19
14 1 0.02
ACGTcount: A:0.18, C:0.14, G:0.12, T:0.56
Consensus pattern (12 bp):
ATTCTGATTTTG
Found at i:84975158 original size:62 final size:62
Alignment explanation
Indices: 84974993--84975158 Score: 206
Period size: 62 Copynumber: 2.7 Consensus size: 62
84974983 TTGCATGCAC
* * *
84974993 ATTCTGATTCTAATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTGATTCTGATTCTGTTACCTAATTCTAATTCTG
* * * ** *
84975055 GTTCTGATTCTGATTCTGTTACCTGACACTGACACTAATTCTGTTACCTAATTCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTGATTCTGATTCTGTTACCTAATTCTAATTCTG
* * * **
84975117 ATTTTGATTTTGATTTTGTCACCTGATTTTGATTCTGATTCT
1 ATTCTGATTCTGATTCTGTCACCTGATACTGATTCTGATTCT
84975159 AATTCTCATT
Statistics
Matches: 86, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
62 86 1.00
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (62 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTGATTCTGATTCTGTTACCTAATTCTAATTCTG
Found at i:84982044 original size:40 final size:40
Alignment explanation
Indices: 84981987--84982202 Score: 296
Period size: 40 Copynumber: 5.4 Consensus size: 40
84981977 GATGATAACG
* * *
84981987 GGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
*
84982027 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
84982067 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
**
84982107 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
84982147 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
84982187 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
84982203 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 16 0.10
40 146 0.90
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:84984975 original size:28 final size:29
Alignment explanation
Indices: 84984865--84984979 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
84984855 GTGAGCATGA
* * *
84984865 ATATGAATGTGA-CTGGGCCTAACGGGCG
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
84984893 ATATAAATGTGATTTGGGCCTAATGGGTC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
84984922 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
84984951 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
84984979 A
1 A
84984980 GATACAGGTA
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 28 0.38
29 45 0.61
30 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:84984985 original size:57 final size:58
Alignment explanation
Indices: 84984878--84984988 Score: 152
Period size: 57 Copynumber: 1.9 Consensus size: 58
84984868 TGAATGTGAC
* * * *
84984878 TGGGCCTAACGGGCGATATAAATGTGATTTGGGCCTAATGGGTCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATT
* * *
84984936 TGGGCCTAATGGGCCATATGAATATGA-TTGGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGT
84984989 ATGTGAATTT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 23 0.50
58 23 0.50
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.28
Consensus pattern (58 bp):
TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATT
Found at i:84986453 original size:25 final size:25
Alignment explanation
Indices: 84986431--84986479 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
84986421 AGCGCTCACT
*
84986431 TGAGCCATATAACAGGATGCTCATG
1 TGAGCCATATAACAGGAAGCTCATG
*
84986456 TGAGCCATGTAACAGGAAGCTCAT
1 TGAGCCATATAACAGGAAGCTCAT
84986480 CCGGGTTGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.22
Consensus pattern (25 bp):
TGAGCCATATAACAGGAAGCTCATG
Found at i:84996859 original size:28 final size:28
Alignment explanation
Indices: 84996819--84996888 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
84996809 ATAGTAAGTC
*
84996819 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
84996847 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
*
84996875 TGCACACTTAGTGC
1 CGCACACTTAGTGC
84996889 CAATCTCATT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 37 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:85004652 original size:28 final size:28
Alignment explanation
Indices: 85004614--85004681 Score: 93
Period size: 28 Copynumber: 2.4 Consensus size: 28
85004604 AGTAAGTCCG
*
85004614 CACACTTAGTGCT-TAATAATCAAACTCA
1 CACACTTAGTGCTAT-ACAATCAAACTCA
* *
85004642 CACACTTAGTGCTATACAATTAAACTCG
1 CACACTTAGTGCTATACAATCAAACTCA
85004670 CACACTTAGTGC
1 CACACTTAGTGC
85004682 CAATCTCATT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 35 0.97
29 1 0.03
ACGTcount: A:0.35, C:0.26, G:0.10, T:0.28
Consensus pattern (28 bp):
CACACTTAGTGCTATACAATCAAACTCA
Found at i:85007585 original size:48 final size:47
Alignment explanation
Indices: 85007514--85007841 Score: 296
Period size: 48 Copynumber: 6.9 Consensus size: 47
85007504 ATACTAGGGT
* * * * *
85007514 TATGTGAGCCAATGTAAGACCATGTTTGAAACAAGACATTGGCCTCGA
1 TATGTGAGCCAGTGTAAGACCATGTTTG-GACATGGCATCGGCCTCGA
* * *
85007562 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGT
1 TATGTGAGCCAGTGTAAGACCATGTTTGG-ACATGGCATCGGCCTCGA
* * * * * * *
85007610 TATGAGAGCTATTGTAAGATCATGCCTCGGACATGGCATCGGCCTCAA
1 TATGTGAGCCAGTGTAAGACCATG-TTTGGACATGGCATCGGCCTCGA
* * * *
85007658 TATGTGAGCCAGTGTAAGACCATGTTTGGACATGGCATCAGCATTGT
1 TATGTGAGCCAGTGTAAGACCATGTTTGGACATGGCATCGGCCTCGA
* * * * * *
85007705 TATGAGAGCTACTGTAAGACCATGTCTAGGACATGGCATCAGCCTCAA
1 TATGTGAGCCAGTGTAAGACCATGT-TTGGACATGGCATCGGCCTCGA
* * * *
85007753 TATGTGAGCCAGTGTAAGACCATGTTTGGAAGATGGCATCGGCTTTGT
1 TATGTGAGCCAGTGTAAGACCATGTTTGG-ACATGGCATCGGCCTCGA
*** * *
85007801 TACCAGAGCTAGTGTAAGACCATGTTTGGGACATGGGATCG
1 TATGTGAGCCAGTGTAAGACCATGTTT-GGACATGGCATCG
85007842 ACATCTTACC
Statistics
Matches: 222, Mismatches: 53, Indels: 10
0.78 0.19 0.04
Matches are distributed among these distances:
47 41 0.18
48 176 0.79
49 5 0.02
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (47 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGACATGGCATCGGCCTCGA
Found at i:85007737 original size:95 final size:96
Alignment explanation
Indices: 85007554--85007841 Score: 434
Period size: 95 Copynumber: 3.0 Consensus size: 96
85007544 ACAAGACATT
*
85007554 GGCCTCGATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGC
1 GGCCTCAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGC
* * * *
85007619 TATTGTAAGATCATGCCTCGGACATGGCATC
66 TACTGTAAGACCATGTCTAGGACATGGCATC
*
85007650 GGCCTCAATATGTGAGCCAGTGTAAGACCATGTTTGG-ACATGGCATCAGCATTGTTATGAGAGC
1 GGCCTCAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGC
85007714 TACTGTAAGACCATGTCTAGGACATGGCATC
66 TACTGTAAGACCATGTCTAGGACATGGCATC
* * * **
85007745 AGCCTCAATATGTGAGCCAGTGTAAGACCATGTTTGGAAGATGGCATCGGCTTTGTTACCAGAGC
1 GGCCTCAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGC
* * * *
85007810 TAGTGTAAGACCATGTTTGGGACATGGGATC
66 TACTGTAAGACCATGTCTAGGACATGGCATC
85007841 G
1 G
85007842 ACATCTTACC
Statistics
Matches: 174, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
95 89 0.51
96 85 0.49
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (96 bp):
GGCCTCAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGC
TACTGTAAGACCATGTCTAGGACATGGCATC
Found at i:85010768 original size:42 final size:42
Alignment explanation
Indices: 85010656--85010820 Score: 134
Period size: 43 Copynumber: 3.9 Consensus size: 42
85010646 AGCATATACA
** ** * * *
85010656 ATGCCAACATCCCAGATGTGGTCTTACATGTAATCAAACATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAA-AGCG
* * * *
85010699 ATGCCATTGTCCCAGACAGGGTATTACACGAAATCAGATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCA-AAAGCG
* * *
85010741 ATGTCAATGTCCCAGACATCGTCTTACACGTAAAACAAAAGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAATCAAAAG-CG
* * *
85010785 ATGCCAACGTCCCAGACGTGGTCTTACACGATATCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCA
85010821 CATATCGAAA
Statistics
Matches: 95, Mismatches: 23, Indels: 8
0.75 0.18 0.06
Matches are distributed among these distances:
42 29 0.31
43 37 0.39
44 29 0.31
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAAAGCG
Found at i:85018780 original size:48 final size:48
Alignment explanation
Indices: 85018724--85019147 Score: 404
Period size: 48 Copynumber: 8.8 Consensus size: 48
85018714 ATGCTAGGGT
* *
85018724 TATGTGAGCTAGTGTAAGACCACGTTTGGAACATGGCATTGGCCTCAA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCAA
* * * ***
85018772 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTT
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCAA
* *
85018820 TATGAGAGCTAGTGTAAGACCATGTCTAGG-ACATGGCATCGGCCTCAA
1 TATGTGAGCTAGTGTAAGACCATGT-TTGGAACATGGCATCGGCCTCAA
* * * ***
85018868 TATGTGTGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGT
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCAA
* ** * *
85018916 TATGAGAGCTAGTGTAAGATTATGTCTGGGACATGGCATCGGCCTCAA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCAA
* * ***
85018964 TATGTGAGCCT-GTGTAAGACCATGTTTGGAACATGGCATTGGCATTGT
1 TATGTGAG-CTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCAA
* * * *
85019012 TATGAGAGCTACTGTAAGACCATGTCTGCG-ACATGGCATCAGCCTCAA
1 TATGTGAGCTAGTGTAAGACCATGTTTG-GAACATGGCATCGGCCTCAA
* * * * * * * ***
85019060 TATGTGAACCAGGGTAAGACTATGTTTGGAGCATGGCATCAGCTTTGT
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCAA
* * * *
85019108 TACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATC
85019148 AGGTATCCAT
Statistics
Matches: 295, Mismatches: 75, Indels: 12
0.77 0.20 0.03
Matches are distributed among these distances:
47 6 0.02
48 283 0.96
49 6 0.02
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (48 bp):
TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCAA
Found at i:85019149 original size:96 final size:96
Alignment explanation
Indices: 85018722--85019147 Score: 645
Period size: 96 Copynumber: 4.4 Consensus size: 96
85018712 TGATGCTAGG
* * * * *
85018722 GTTATGTGAGCTAGTGTAAGACCACGTTTGGAACATGGCATTGGCCTCAATATGTGAGCCAGTGT
1 GTTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGTGT
*
85018787 AAGACCATGTTTGGAACATGGCATCGACATT
66 AAGACCATGTTTGGAACATGGCATCGGCATT
* * *
85018818 TTTATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCAATATGTGTGCCAGTGT
1 GTTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGTGT
85018883 AAGACCATGTTTGGAACATGGCATCGGCATT
66 AAGACCATGTTTGGAACATGGCATCGGCATT
** *
85018914 GTTATGAGAGCTAGTGTAAGATTATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCTGTGT
1 GTTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGTGT
*
85018979 AAGACCATGTTTGGAACATGGCATTGGCATT
66 AAGACCATGTTTGGAACATGGCATCGGCATT
* * * * *
85019010 GTTATGAGAGCTACTGTAAGACCATGTCTGCGACATGGCATCAGCCTCAATATGTGAACCAGGGT
1 GTTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGTGT
* * * *
85019075 AAGACTATGTTTGGAGCATGGCATCAGCTTT
66 AAGACCATGTTTGGAACATGGCATCGGCATT
*
85019106 GTTACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
1 GTTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
85019148 AGGTATCCAT
Statistics
Matches: 298, Mismatches: 32, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
96 298 1.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (96 bp):
GTTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGTGT
AAGACCATGTTTGGAACATGGCATCGGCATT
Found at i:85021466 original size:27 final size:27
Alignment explanation
Indices: 85021436--85021613 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
85021426 ATATTGAGTC
* * *
85021436 CGCACACTCAGTGCTATATAATCGACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
85021463 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
85021490 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
85021518 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
85021545 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
85021572 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
85021599 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
85021614 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:85021575 original size:82 final size:81
Alignment explanation
Indices: 85021462--85021612 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
85021452 TATAATCGAC
* *
85021462 TCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
85021527 AGTGCCGCATGGTCAAT
65 AGTGCCGCATGGTCAAT
* **
85021544 TCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
1 TCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
85021608 AGTGC
65 AGTGC
85021613 TGTACAATTT
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.25
82 47 0.75
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCAAT
Found at i:85028665 original size:25 final size:24
Alignment explanation
Indices: 85028588--85028665 Score: 68
Period size: 25 Copynumber: 3.2 Consensus size: 24
85028578 GAGCTATTAC
* *
85028588 CAGGAAGCTCCAGATAGCCATTTAA
1 CAGGAAGCTCAAGATAGCC-TATAA
* * ** *
85028613 CAGGATGTTCAAGCGAGCC-ATAT
1 CAGGAAGCTCAAGATAGCCTATAA
85028636 CAGGAAGCTCAAGAATAGCCTATAA
1 CAGGAAGCTCAAG-ATAGCCTATAA
85028661 CAGGA
1 CAGGA
85028666 CACTCATAAG
Statistics
Matches: 39, Mismatches: 12, Indels: 4
0.71 0.22 0.07
Matches are distributed among these distances:
23 13 0.33
24 4 0.10
25 22 0.56
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (24 bp):
CAGGAAGCTCAAGATAGCCTATAA
Found at i:85040971 original size:30 final size:31
Alignment explanation
Indices: 85040910--85040972 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
85040900 CCTTTTCATA
*
85040910 TTTCATATTTCATAACACTGGGCCAAAGCCT
1 TTTCAAATTTCATAACACTGGGCCAAAGCCT
** *
85040941 TTTCAAATTTCATATTACT-GGCCTAAGCCT
1 TTTCAAATTTCATAACACTGGGCCAAAGCCT
85040971 TT
1 TT
85040973 ACTGTAAACG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 12 0.43
31 16 0.57
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCAAAGCCT
Found at i:85041218 original size:24 final size:24
Alignment explanation
Indices: 85041180--85041354 Score: 257
Period size: 24 Copynumber: 7.4 Consensus size: 24
85041170 CTAGAGGCCT
* *
85041180 AGCCTCTTTTAATAAATGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
*
85041205 AGCCCTTTTTATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
85041229 AGCCC-TTTAATAACTAGGGCGTA
1 AGCCCTTTTAATAACTGGGGCATA
*
85041252 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
85041276 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
85041300 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
85041323 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
85041346 AGCCCTTTT
1 AGCCCTTTT
85041355 CACTTCCTCC
Statistics
Matches: 138, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
23 65 0.47
24 69 0.50
25 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:85041240 original size:47 final size:47
Alignment explanation
Indices: 85041187--85041354 Score: 257
Period size: 47 Copynumber: 3.6 Consensus size: 47
85041177 CCTAGCCTCT
* * *
85041187 TTTAATAAATGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
* * *
85041234 TTTAATAACTAGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
85041281 TTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
85041328 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
85041355 CACTTCCTCC
Statistics
Matches: 109, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
46 22 0.20
47 67 0.61
48 20 0.18
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:85041248 original size:23 final size:23
Alignment explanation
Indices: 85041187--85041353 Score: 244
Period size: 23 Copynumber: 7.1 Consensus size: 23
85041177 CCTAGCCTCT
* *
85041187 TTTAATAAATGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
85041210 TTTTTATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
* *
85041234 TTTAATAACTAGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
85041257 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
85041281 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
85041305 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
85041328 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
85041351 TTT
1 TTT
85041354 TCACTTCCTC
Statistics
Matches: 132, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
23 68 0.52
24 64 0.48
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:85041428 original size:20 final size:20
Alignment explanation
Indices: 85041403--85041469 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
85041393 TTATGAATAC
85041403 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
85041423 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
85041443 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
85041463 ACCATGT
1 ATCATGT
85041470 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:85041434 original size:11 final size:11
Alignment explanation
Indices: 85041403--85041458 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
85041393 TTATGAATAC
85041403 ATCATGTGCAT
1 ATCATGTGCAT
*
85041414 ATCA--TACAT
1 ATCATGTGCAT
85041423 ATCATGTGCAT
1 ATCATGTGCAT
*
85041434 ATCA--TACAT
1 ATCATGTGCAT
*
85041443 GTCATGTGCAT
1 ATCATGTGCAT
85041454 ATCAT
1 ATCAT
85041459 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:85050041 original size:46 final size:46
Alignment explanation
Indices: 85049988--85050124 Score: 177
Period size: 46 Copynumber: 3.0 Consensus size: 46
85049978 TATATATACA
* * * *
85049988 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * * *
85050034 CATCTCATATACGTTTCGCATTAGCCATTCGGCTTTATCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
*
85050080 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTT-CCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGG-CTTTACCACATAT
85050125 ATACATGTTC
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
46 73 0.95
47 4 0.05
ACGTcount: A:0.25, C:0.30, G:0.09, T:0.36
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:85050171 original size:47 final size:47
Alignment explanation
Indices: 85050098--85050289 Score: 251
Period size: 47 Copynumber: 4.1 Consensus size: 47
85050088 ACACATTTCG
* * **
85050098 CATTAGCCATTCGGCCTT-TCCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT-CACACATACGCATGTTCACATTCATCA
* * * * * *
85050145 CATCGGCCCTTCGGTCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
85050192 CATTGGCCATTCGGCCTTATCGCACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
85050239 CATTGACCATTCGGCCTTATCACACATACGCATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
85050286 CATT
1 CATT
85050290 AAAATCCTAA
Statistics
Matches: 129, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
47 128 0.99
48 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:85054360 original size:40 final size:40
Alignment explanation
Indices: 85054328--85054758 Score: 639
Period size: 40 Copynumber: 10.8 Consensus size: 40
85054318 CCAGCATGAT
* * *
85054328 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** **
85054368 TGCTCTTCGGGGTTTAGCATGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* **
85054408 TGCTCTTCGGAACTTAGCCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
85054448 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
85054488 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* **
85054528 TGCTCTTCGGAACTTAGCCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
85054568 TGCTCTTCGCGACTTAGCCAGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
**
85054608 TGCTCTTCGGGGTTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
85054648 TGCTC-TCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
85054687 TGCTCTTCGGGACCTAGCCCGGGTACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
85054727 TGCTCTTCGGGACTTAGCCCGGGTATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
85054759 CTCAATTCTT
Statistics
Matches: 352, Mismatches: 38, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
39 37 0.11
40 315 0.89
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:85056299 original size:46 final size:46
Alignment explanation
Indices: 85056246--85056382 Score: 186
Period size: 46 Copynumber: 3.0 Consensus size: 46
85056236 TATATATACA
* * * *
85056246 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
85056292 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTATCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
*
85056338 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTT-CCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGG-CTTTACCACATAT
85056383 ATACATGTTC
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 75 0.95
47 4 0.05
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.36
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:85056416 original size:47 final size:47
Alignment explanation
Indices: 85056356--85056547 Score: 269
Period size: 47 Copynumber: 4.1 Consensus size: 47
85056346 ACACATTTCG
* **
85056356 CATTAGCCATTCGGCCTT-TCCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT-CACATATACGCATGTTCACATTCATCA
* * * *
85056403 CATCGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTGATCA
1 CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
* *
85056450 CATTGGCCATTCGGCCTTATCGCACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
* *
85056497 CATTGGCCATTCGGCCTTATCACACATACGCATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
85056544 CATT
1 CATT
85056548 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
47 131 0.99
48 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
Found at i:85059357 original size:31 final size:31
Alignment explanation
Indices: 85059316--85059379 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
85059306 CCTTTTCATA
*
85059316 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
85059347 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
85059378 TT
1 TT
85059380 GCTGTAAACA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:85059625 original size:24 final size:24
Alignment explanation
Indices: 85059573--85059738 Score: 221
Period size: 24 Copynumber: 7.0 Consensus size: 24
85059563 GCTTTATCAT
*
85059573 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * *
85059598 ATAACTAGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
85059622 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
** *
85059645 ATAACTGGGGTGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
85059669 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
85059693 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
85059716 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
85059739 TCAATTCCTC
Statistics
Matches: 125, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
23 42 0.34
24 72 0.58
25 11 0.09
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:85059649 original size:47 final size:48
Alignment explanation
Indices: 85059572--85059738 Score: 223
Period size: 47 Copynumber: 3.5 Consensus size: 48
85059562 TGCTTTATCA
* * *
85059572 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
**
85059621 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGTGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
85059668 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
85059715 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
85059739 TCAATTCCTC
Statistics
Matches: 106, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
47 68 0.64
48 25 0.24
49 13 0.12
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:85059673 original size:71 final size:71
Alignment explanation
Indices: 85059573--85059738 Score: 244
Period size: 71 Copynumber: 2.3 Consensus size: 71
85059563 GCTTTATCAT
* *
85059573 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTAGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
85059637 GCCCTTTA
64 GCCCTTTA
** * * *
85059645 ATAACTGGGGTGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
85059710 CCTTTA
66 CCTTTA
85059716 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
85059739 TCAATTCCTC
Statistics
Matches: 85, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
71 73 0.86
72 12 0.14
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:85059813 original size:20 final size:20
Alignment explanation
Indices: 85059788--85059854 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
85059778 TTATGAATAC
85059788 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
85059808 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
85059828 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
85059848 ACCATGT
1 ATCATGT
85059855 TTCTCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:85059819 original size:11 final size:11
Alignment explanation
Indices: 85059788--85059843 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
85059778 TTATGAATAC
85059788 ATCATGTGCAT
1 ATCATGTGCAT
*
85059799 ATCA--TACAT
1 ATCATGTGCAT
85059808 ATCATGTGCAT
1 ATCATGTGCAT
*
85059819 ATCA--TACAT
1 ATCATGTGCAT
*
85059828 GTCATGTGCAT
1 ATCATGTGCAT
85059839 ATCAT
1 ATCAT
85059844 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:85062724 original size:22 final size:22
Alignment explanation
Indices: 85062696--85062740 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
85062686 TCTAAAATTG
85062696 TTTTAGTGTAAGTTAATGATAC
1 TTTTAGTGTAAGTTAATGATAC
85062718 TTTTAGTGTAAGTTAATGATAC
1 TTTTAGTGTAAGTTAATGATAC
85062740 T
1 T
85062741 AAGTTTATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.04, G:0.18, T:0.47
Consensus pattern (22 bp):
TTTTAGTGTAAGTTAATGATAC
Found at i:85063243 original size:49 final size:48
Alignment explanation
Indices: 85063132--85063492 Score: 192
Period size: 49 Copynumber: 7.6 Consensus size: 48
85063122 GGGATAAGAT
* * * * *
85063132 GCTGACGCCATGTCCCAGACATGGTCTTACACTGGC-TAACACATCAAA
1 GCTGATGCCATGTCCCAGACA-GGTCTTACACTGACTTCATATATCAAA
*
85063180 G-TCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCAAG
1 GCT-GATGCCATGTCCCAGACAGGTCTTACACTGAC-TTCATATATCAAA
* * * * * * *
85063229 GCTGATGCCGTGTCCCAAATAGGTCTTACACTGGCTCTCATCTATCGAT
1 GCTGATGCCATGTCCCAGACAGGTCTTACACTGACT-TCATATATCAAA
* * * *
85063278 GTTGATGCCATGTCCCAGACAGGTCTTGCACTGAC-ACAGA-A-C-AA
1 GCTGATGCCATGTCCCAGACAGGTCTTACACTGACTTCATATATCAAA
** * * ***
85063322 GCTGACACCATGTCCCAGACCGGTCTTACACT-AGCTCTCATCTATCGGT
1 GCTGATGCCATGTCCCAGACAGGTCTTACACTGA-CT-TCATATATCAAA
* * *
85063371 G-TCAATGCCATGTCCACA-ACAGGTCTTACACTGAC-ACACA-A-C-AA
1 GCT-GATGCCATGTCC-CAGACAGGTCTTACACTGACTTCATATATCAAA
* * * * * * * * *
85063415 GCTGACGCCATGACCCAGATAGGTATTACACTAACTTGTATATCTCGAG
1 GCTGATGCCATGTCCCAGACAGGTCTTACACTGACTT-CATATATCAAA
** *
85063464 GCCAATG-CATGTCCCAGACAAGTCTTACA
1 GCTGATGCCATGTCCCAGACAGGTCTTACA
85063493 TTGGCTCTCA
Statistics
Matches: 232, Mismatches: 60, Indels: 42
0.69 0.18 0.13
Matches are distributed among these distances:
43 3 0.01
44 53 0.23
45 3 0.01
46 6 0.03
47 19 0.08
48 40 0.17
49 104 0.45
50 4 0.02
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.24
Consensus pattern (48 bp):
GCTGATGCCATGTCCCAGACAGGTCTTACACTGACTTCATATATCAAA
Found at i:85063362 original size:93 final size:93
Alignment explanation
Indices: 85063132--85063447 Score: 350
Period size: 93 Copynumber: 3.4 Consensus size: 93
85063122 GGGATAAGAT
* ** * *
85063132 GCTGACGCCATGTCCCAGACATGGTCTTACACTGGCTAACA-C-ATCAAAGTCGATGCCATGTCC
1 GCTGACGCCATGTCCCAGACA-GGTCTTACACTAGCTCTCATCTATCGATGTCGATGCCATGTCC
* *
85063195 CAGACAGGTCTTACACTGACTTTCATATATCAA
65 CAGACAGGTCTTACACTGAC--ACACA-A-CAA
* * * * * *
85063228 GGCTGATGCCGTGTCCCAAATAGGTCTTACACTGGCTCTCATCTATCGATGTTGATGCCATGTCC
1 -GCTGACGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATCTATCGATGTCGATGCCATGTCC
* *
85063293 CAGACAGGTCTTGCACTGACACAGAACAA
65 CAGACAGGTCTTACACTGACACACAACAA
* * * *
85063322 GCTGACACCATGTCCCAGACCGGTCTTACACTAGCTCTCATCTATCGGTGTCAATGCCATGTCCA
1 GCTGACGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATCTATCGATGTCGATGCCATGTCC-
85063387 CA-ACAGGTCTTACACTGACACACAACAA
65 CAGACAGGTCTTACACTGACACACAACAA
* * *
85063415 GCTGACGCCATGACCCAGATAGGTATTACACTA
1 GCTGACGCCATGTCCCAGACAGGTCTTACACTA
85063448 ACTTGTATAT
Statistics
Matches: 187, Mismatches: 29, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
93 106 0.57
94 5 0.03
95 1 0.01
96 20 0.11
97 18 0.10
98 37 0.20
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (93 bp):
GCTGACGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATCTATCGATGTCGATGCCATGTCCC
AGACAGGTCTTACACTGACACACAACAA
Found at i:85063470 original size:93 final size:93
Alignment explanation
Indices: 85063184--85063492 Score: 257
Period size: 93 Copynumber: 3.3 Consensus size: 93
85063174 ATCAAAGTCG
* * ** * * * *
85063184 ATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCAAGGCTGATGCCGTGTCCCAAAT
1 ATGCCATGTCCCAGACAGGTCTTACACTGAC--ACACA-A-CAA-GCTGACACCATGACCCAGAC
* ** * * ***
85063249 AGGTCTTACACTGGCTCTCATCTATCGATGTTG
61 AGGTATTACACTAACTCTCATATATCGGTGCCA
* * * * *
85063282 ATGCCATGTCCCAGACAGGTCTTGCACTGACACAGAACAAGCTGACACCATGTCCCAGACCGGTC
1 ATGCCATGTCCCAGACAGGTCTTACACTGACACACAACAAGCTGACACCATGACCCAGACAGGTA
* * *
85063347 TTACACTAGCTCTCATCTATCGGTGTCA
66 TTACACTAACTCTCATATATCGGTGCCA
* *
85063375 ATGCCATGTCCACA-ACAGGTCTTACACTGACACACAACAAGCTGACGCCATGACCCAGATAGGT
1 ATGCCATGTCC-CAGACAGGTCTTACACTGACACACAACAAGCTGACACCATGACCCAGACAGGT
* *
85063439 ATTACACTAACT-TGTATATCTCGAG-GCCA
65 ATTACACTAACTCT-CATATATCG-GTGCCA
*
85063468 ATG-CATGTCCCAGACAAGTCTTACA
1 ATGCCATGTCCCAGACAGGTCTTACA
85063493 TTGGCTCTCA
Statistics
Matches: 181, Mismatches: 26, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
91 2 0.01
92 19 0.10
93 120 0.66
94 6 0.03
95 1 0.01
96 3 0.02
98 30 0.17
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (93 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGACACACAACAAGCTGACACCATGACCCAGACAGGTA
TTACACTAACTCTCATATATCGGTGCCA
Found at i:85073921 original size:48 final size:44
Alignment explanation
Indices: 85073765--85073973 Score: 144
Period size: 42 Copynumber: 4.8 Consensus size: 44
85073755 GATGCCAATT
* * **
85073765 CCATATCCTAGATATGGTCTTACATGGGATCACATATC--GATG
1 CCATATCCCAGATATGGTCTTACACGAAATCACATATCGAGATG
* * * * ** *
85073807 CCAATAGCCCAGCTATGATCTTACATGATGTCTCATATC--GATG
1 CC-ATATCCCAGATATGGTCTTACACGAAATCACATATCGAGATG
* * *
85073850 CCAT-TGCCCAGACATGGTATTACACGAAATCACATATTGATGCCAATG
1 CCATAT-CCCAGATATGGTCTTACACGAAATCACATATCGA-G---ATG
* * *
85073898 CCATATCCCAGATATGGCCTTACATGAGATCACATATCGAG--G
1 CCATATCCCAGATATGGTCTTACACGAAATCACATATCGAGATG
* *
85073940 CCATATCCCAAATATGGTCTTACACGAAACCACA
1 CCATATCCCAGATATGGTCTTACACGAAATCACA
85073974 CATAACCCTA
Statistics
Matches: 129, Mismatches: 29, Indels: 18
0.73 0.16 0.10
Matches are distributed among these distances:
42 57 0.44
43 34 0.26
45 1 0.01
47 1 0.01
48 35 0.27
49 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (44 bp):
CCATATCCCAGATATGGTCTTACACGAAATCACATATCGAGATG
Found at i:85078506 original size:22 final size:22
Alignment explanation
Indices: 85078478--85078523 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
85078468 TCCAAGACTT
85078478 ATGTTGTCCTTAATTCTTTCCC
1 ATGTTGTCCTTAATTCTTTCCC
85078500 ATGTTGTCCTTAATTCTTTCCC
1 ATGTTGTCCTTAATTCTTTCCC
85078522 AT
1 AT
85078524 ACTTTACACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.15, C:0.26, G:0.09, T:0.50
Consensus pattern (22 bp):
ATGTTGTCCTTAATTCTTTCCC
Found at i:85082071 original size:14 final size:15
Alignment explanation
Indices: 85082052--85082081 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
85082042 GTTTATTATA
85082052 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
85082066 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
85082081 T
1 T
85082082 CTTAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:85084103 original size:43 final size:43
Alignment explanation
Indices: 85083971--85084106 Score: 118
Period size: 42 Copynumber: 3.2 Consensus size: 43
85083961 GGCTTTGAGC
*
85083971 CTAGCAGGCATAATGCCGGTGAAATGATTTCGGACTTAAAGGT
1 CTAGCAGGCATAATGCCGGTGAAATGATATCGGACTTAAAGGT
* * * ** * *** *
85084014 CTTGCAAGCTTTAA-GTTGGTG-AAT-ATTATCGGGCTCCGA-GC
1 CTAGCAGGC-ATAATGCCGGTGAAATGA-TATCGGACTTAAAGGT
*
85084055 CTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
1 CTAGCAGGCATAATGCCGGTGAAATGATATCGGACTTAAAGGT
85084098 CTAGCAGGC
1 CTAGCAGGC
85084107 TTATTGCCAG
Statistics
Matches: 66, Mismatches: 21, Indels: 12
0.67 0.21 0.12
Matches are distributed among these distances:
40 3 0.05
41 14 0.21
42 23 0.35
43 23 0.35
44 3 0.05
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (43 bp):
CTAGCAGGCATAATGCCGGTGAAATGATATCGGACTTAAAGGT
Found at i:85092448 original size:23 final size:23
Alignment explanation
Indices: 85092415--85092459 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
85092405 ATATGAGAGT
*
85092415 ATGAAATTTTTGGTGAATTAATA
1 ATGAAAATTTTGGTGAATTAATA
85092438 ATGAAAATTTTGGTGAATTAAT
1 ATGAAAATTTTGGTGAATTAAT
85092460 TTTAGCAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.18, T:0.42
Consensus pattern (23 bp):
ATGAAAATTTTGGTGAATTAATA
Found at i:85092828 original size:17 final size:17
Alignment explanation
Indices: 85092806--85092844 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
85092796 ATGATGATTT
85092806 TTGTACTTTTAGAACCC
1 TTGTACTTTTAGAACCC
85092823 TTGTACTTTTAGAACCC
1 TTGTACTTTTAGAACCC
85092840 TTGTA
1 TTGTA
85092845 GCATGAGCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.23, C:0.21, G:0.13, T:0.44
Consensus pattern (17 bp):
TTGTACTTTTAGAACCC
Found at i:85093581 original size:28 final size:28
Alignment explanation
Indices: 85093541--85093597 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
85093531 GCATCGACCA
85093541 CATTATAAGAGCCAGTGTAAGACTATGT
1 CATTATAAGAGCCAGTGTAAGACTATGT
85093569 CATTATAAGAGCCAGTGTAAGACTATGT
1 CATTATAAGAGCCAGTGTAAGACTATGT
85093597 C
1 C
85093598 TAGGACATGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (28 bp):
CATTATAAGAGCCAGTGTAAGACTATGT
Found at i:85093680 original size:46 final size:45
Alignment explanation
Indices: 85093578--85093802 Score: 197
Period size: 46 Copynumber: 4.8 Consensus size: 45
85093568 TCATTATAAG
*
85093578 AGCCAGTGTAAGACTATGTCTAGGACATGGCATCGGCATTGAGATG-A
1 AGCCAGTGTAAGAC-ATGTCTAGGACAT-GCATCGGC-TAGAGATGTA
* * * *
85093625 GAGCTAGTGTAAGACATGTCTGGGACATGTATCGGGCTCGAGATGTA
1 -AGCCAGTGTAAGACATGTCTAGGACATGCATC-GGCTAGAGATGTA
*
85093672 AGCCAGTGTAAGACATGTCTAGGATATGCATCGGCTAAGAGATGT-
1 AGCCAGTGTAAGACATGTCTAGGACATGCATCGGCT-AGAGATGTA
* * * *
85093717 A-TCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATGTGA
1 AGCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGC-TAGAGATGT-A
*
85093765 GAGCTAGTGTAAGACCATGTCCT-GGACATGGCATCGGC
1 -AGCCAGTGTAAGA-CATGT-CTAGGACAT-GCATCGGC
85093803 CTCGATTTCG
Statistics
Matches: 150, Mismatches: 16, Indels: 20
0.81 0.09 0.11
Matches are distributed among these distances:
44 10 0.07
45 17 0.11
46 61 0.41
47 16 0.11
48 13 0.09
49 1 0.01
50 30 0.20
51 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.24
Consensus pattern (45 bp):
AGCCAGTGTAAGACATGTCTAGGACATGCATCGGCTAGAGATGTA
Found at i:85093841 original size:49 final size:49
Alignment explanation
Indices: 85093581--85093849 Score: 190
Period size: 46 Copynumber: 5.7 Consensus size: 49
85093571 TTATAAGAGC
* * ** * * *
85093581 CAGTGTAAGACTATGTCTAGGACATGGCATCGGCATTGAGATGAGAGCT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATGTGAGAT
* * * * *
85093630 -AGTGTAAGA-CATGTCTGGGACAT-GTATCGGGCTC-GAGATGTAAG-C
1 CAGTGTAAGACCATGTCTGGGACATGGCATC-GGCACAGATATGTGAGAT
* * *
85093675 CAGTGTAAGA-CATGTCTAGGATAT-GCATCGGCTA-AGAGATGT---AT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACAGATATGTGAGAT
*
85093719 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATGTGAGAG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATGTGAGAT
* *
85093768 CTAGTGTAAGACCATGTCCT-GGACATGGCATCGGC-CTCGAT-T-TCGATATT
1 C-AGTGTAAGACCATGT-CTGGGACATGGCATCGGCAC-AGATATGT-GAGA-T
* *
85093818 CAGTGTAAAACCATGTCTGGGACATAGCATCG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCG
85093850 ACTTGATGGA
Statistics
Matches: 181, Mismatches: 22, Indels: 34
0.76 0.09 0.14
Matches are distributed among these distances:
44 10 0.06
45 16 0.09
46 59 0.33
47 15 0.08
48 12 0.07
49 33 0.18
50 34 0.19
51 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (49 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATGTGAGAT
Found at i:85096902 original size:42 final size:42
Alignment explanation
Indices: 85096788--85096992 Score: 187
Period size: 42 Copynumber: 4.7 Consensus size: 42
85096778 TAGTAAGATG
* * * *
85096788 TCAATGCCATATCCCAGATAAGGTCTTACATGGGATCACATA
1 TCAATGTCATATCCCAGATATGGTCTTACACGAGATCACATA
* * * * * *
85096830 TCGATGCCAATAACCCAGCTATGGTCTTACACGATATCTCATA
1 TCAATGTC-ATATCCCAGATATGGTCTTACACGAGATCACATA
* * *
85096873 TCGATGTCATATCCCAGACATGGTCTTACACGAAATCACATATTGA
1 TCAATGTCATATCCCAGATATGGTCTTACACGAGATCAC--A-T-A
* *
85096919 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGATCACATA
1 T--CAATGTCATATCCCAGATATGGTCTTACACGAGATCACATA
*
85096963 TCAAT-TCCATATCCCAGATATGTTCTTACA
1 TCAATGT-CATATCCCAGATATGGTCTTACA
85096993 TGAAACCACA
Statistics
Matches: 135, Mismatches: 20, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
41 1 0.01
42 59 0.44
43 34 0.25
44 3 0.02
45 2 0.01
46 3 0.02
48 33 0.24
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (42 bp):
TCAATGTCATATCCCAGATATGGTCTTACACGAGATCACATA
Found at i:85096975 original size:90 final size:85
Alignment explanation
Indices: 85096788--85097002 Score: 234
Period size: 90 Copynumber: 2.5 Consensus size: 85
85096778 TAGTAAGATG
* * ** *
85096788 TCAATGCCATATCCCAGATAAGGTCTTACATGGGATCACATATCGATGCCAATAACCCAGCTATG
1 TCAATTCCATATCCCAGATATGGTCTTACATGAAATCACATATCGATGCCAATAACCCAGATATG
* *
85096853 GTCTTACACGATATCTCATA
66 GTCTTACACGAGATCACATA
* * * *
85096873 TCGATGT-CATATCCCAGACATGGTCTTACACGAAATCACATATTGATGCCAATGTCATATCCCA
1 TCAAT-TCCATATCCCAGATATGGTCTTACATGAAATCACATATCGATGCCAA--T-A-A-CCCA
* *
85096937 GATATGGTCTTACATGGGATCACATA
60 GATATGGTCTTACACGAGATCACATA
* *
85096963 TCAATTCCATATCCCAGATATGTTCTTACATGAAACCACA
1 TCAATTCCATATCCCAGATATGGTCTTACATGAAATCACA
85097003 CATAACCCTA
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
85 43 0.41
87 1 0.01
88 1 0.01
89 2 0.02
90 58 0.55
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.28
Consensus pattern (85 bp):
TCAATTCCATATCCCAGATATGGTCTTACATGAAATCACATATCGATGCCAATAACCCAGATATG
GTCTTACACGAGATCACATA
Found at i:85100692 original size:11 final size:11
Alignment explanation
Indices: 85100686--85100711 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
85100676 TGAAATTTTC
85100686 TCAAAATTCTA
1 TCAAAATTCTA
85100697 TCAAAATTCTA
1 TCAAAATTCTA
85100708 TCAA
1 TCAA
85100712 TTTTATTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (11 bp):
TCAAAATTCTA
Found at i:85100968 original size:48 final size:47
Alignment explanation
Indices: 85100850--85100980 Score: 167
Period size: 48 Copynumber: 2.7 Consensus size: 47
85100840 AGTGATGATT
* * *
85100850 TTAAATTTTCAATACTATTCGATATTTTCTTAATTTATGCAAATTTAA
1 TTAAAATTTCAATACTATT-GATATTTTTTTCATTTATGCAAATTTAA
85100898 TT-AAATTTGCAATACTATTTGATATTTTTTTCATTTATGC-AATTATAA
1 TTAAAATTT-CAATACTA-TTGATATTTTTTTCATTTATGCAAATT-TAA
*
85100946 TTAAAATTTCAATACTACTTGATTTTTTTTTCATT
1 TTAAAATTTCAATACTA-TTGATATTTTTTTCATT
85100981 GCATTAATTA
Statistics
Matches: 74, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
47 9 0.12
48 57 0.77
49 8 0.11
ACGTcount: A:0.33, C:0.10, G:0.05, T:0.53
Consensus pattern (47 bp):
TTAAAATTTCAATACTATTGATATTTTTTTCATTTATGCAAATTTAA
Found at i:85102590 original size:18 final size:18
Alignment explanation
Indices: 85102567--85102609 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
85102557 AGCGAGGTGC
*
85102567 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
85102585 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
85102603 GTTTCCT
1 GTATCCT
85102610 TTTTCTAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.28, G:0.09, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:85106429 original size:172 final size:174
Alignment explanation
Indices: 85106127--85106439 Score: 495
Period size: 173 Copynumber: 1.8 Consensus size: 174
85106117 CGTGGGAGCT
* *
85106127 TTTTTCAGAACTTTTTGCCAACAGTGCATCCTACTTGAAGCATTTTCGACACTATTCGTTCAAAA
1 TTTTTCAGAACTTTTTGCCAACAGTGCATCCTACTTGAAACATTTTCGACAATATTCGTTCAAAA
* * *
85106192 ACGTCTACTCAGGCTCATTTTCTTGCGAACTACTATAGCAAAAGAGCGTCCATGTGGAAGCTTTT
66 ACGTCGACTCAGACTCATTTTCTTGCGAACTACTATAGCAAAAGAGCGTCCACGTGGAAGCTTTT
85106257 TTCAAAACTTTTAGGGTTTAGGGTTTAAGGTTTAACGCGAGACC
131 TTCAAAACTTTTAGGGTTTAGGGTTTAAGGTTTAACGCGAGACC
** ** * *
85106301 TTTTTCAGAAC-TTTTGCTGACAGTGCATCCTGTTTGAAACGTTTTCGACAATATTTGTTCAAAA
1 TTTTTCAGAACTTTTTGCCAACAGTGCATCCTACTTGAAACATTTTCGACAATATTCGTTCAAAA
* *
85106365 ACGTCGACTTAGACTCATTTT-TTGCGAACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTT
66 ACGTCGACTCAGACTCATTTTCTTGCGAACTACTATAGCAAAAGAGCGTCCACGTGGAAGCTTTT
85106429 TTCAAAACTTT
131 TTCAAAACTTT
85106440 AGCCGATAGT
Statistics
Matches: 126, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
172 52 0.41
173 63 0.50
174 11 0.09
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (174 bp):
TTTTTCAGAACTTTTTGCCAACAGTGCATCCTACTTGAAACATTTTCGACAATATTCGTTCAAAA
ACGTCGACTCAGACTCATTTTCTTGCGAACTACTATAGCAAAAGAGCGTCCACGTGGAAGCTTTT
TTCAAAACTTTTAGGGTTTAGGGTTTAAGGTTTAACGCGAGACC
Found at i:85106760 original size:126 final size:126
Alignment explanation
Indices: 85106301--85106752 Score: 590
Period size: 126 Copynumber: 3.6 Consensus size: 126
85106291 ACGCGAGACC
* * * * *
85106301 TTTTTCAGAACTTTTGCTGACAGTGCATCCTGTTTGAAACGTTTTCGACAATATTTGTTCAAAAA
1 TTTTTCAGAAATTTTGCTGACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAA
* *
85106366 CGTCGACTTAGACTCATTTTT-TGCGAACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCT
66 CGTCTACTCAGACTCATTTTTCTGCGAACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCT
* * * *
85106426 TTTTTCA-AAACTTTAGCCGATAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTTAGAA
1 TTTTTCAGAAA-TTTTGCTGACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAA
* * *
85106490 ACGT-TGACTCAGGCTCATGTTTCTGCGAACTACTATAGCAAAAGAGCGTCCACGTGGAAGCT
65 ACGTCT-ACTCAGACTCATTTTTCTGCGAACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCT
* * *
85106552 TTTTTCAGAACTTTTGCTGACAGTGCATCCTACTTGAAGCGTTTTCGACACTATCTGTTCAGAAA
1 TTTTTCAGAAATTTTGCTGACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAA
* * * * * * *
85106617 CATCTACTCAGATTTATTTTTCTACGAACTACTGTAGCAAAAAAAGCGTCCATGTGGGAG-T
66 CGTCTACTCAGACTCATTTTTCTGCGAACTACTGTAGC-AAAAGAGCGTCCACGTGGAAGCT
* *
85106678 TTTTTCCAGAAATTTT-CTGACATTGCATCCTGCATGAAGCGTTTTCGACACTATTTGTTCAGAA
1 TTTTT-CAGAAATTTTGCTGACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAA
*
85106742 ATGTCTACTCA
65 ACGTCTACTCA
85106753 AAATTATTCT
Statistics
Matches: 282, Mismatches: 38, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
124 2 0.01
125 69 0.24
126 181 0.64
127 30 0.11
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (126 bp):
TTTTTCAGAAATTTTGCTGACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAA
CGTCTACTCAGACTCATTTTTCTGCGAACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCT
Found at i:85107467 original size:23 final size:23
Alignment explanation
Indices: 85107430--85107496 Score: 116
Period size: 23 Copynumber: 2.8 Consensus size: 23
85107420 TATAAACCCT
85107430 AAAAACCCTAAAACCCTAAAATATA
1 AAAAACCCT--AACCCTAAAATATA
85107455 AAAAACCCTAACCCTAAAATATA
1 AAAAACCCTAACCCTAAAATATA
85107478 AAAAACCCTAACCCTAAAA
1 AAAAACCCTAACCCTAAAA
85107497 ACCCTAAAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
23 33 0.79
25 9 0.21
ACGTcount: A:0.58, C:0.27, G:0.00, T:0.15
Consensus pattern (23 bp):
AAAAACCCTAACCCTAAAATATA
Found at i:85111769 original size:15 final size:16
Alignment explanation
Indices: 85111749--85111786 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
85111739 CCTAAGTAAT
85111749 TATTATTTA-T-ATAG
1 TATTATTTATTCATAG
85111763 ATATTATTTATTCATAG
1 -TATTATTTATTCATAG
85111780 TATTATT
1 TATTATT
85111787 GCAATTAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 9 0.43
16 8 0.38
17 4 0.19
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (16 bp):
TATTATTTATTCATAG
Found at i:85113418 original size:33 final size:33
Alignment explanation
Indices: 85113376--85113443 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
85113366 CCCTTTATCT
*
85113376 CCAAACAAAAAATCATCTAAAAAAGTCCCTAAA
1 CCAAACAAAAAATCATCTAAAAAAATCCCTAAA
85113409 CCAAACAAAAAATCATCTAAAAAAATCCCTAAA
1 CCAAACAAAAAATCATCTAAAAAAATCCCTAAA
85113442 CC
1 CC
85113444 TAAATAGTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.57, C:0.26, G:0.01, T:0.15
Consensus pattern (33 bp):
CCAAACAAAAAATCATCTAAAAAAATCCCTAAA
Found at i:85122231 original size:31 final size:31
Alignment explanation
Indices: 85122175--85122240 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
85122165 AGAAAGTAAC
* * * *
85122175 AATTCTACTCTTTTTGATAGGTTGAT-GTTCA
1 AATTCAACTCTTTTTAAAAGATTGATGGTT-A
85122206 AATTCAACTCTTTTTAAAAGATTGATGGTTA
1 AATTCAACTCTTTTTAAAAGATTGATGGTTA
85122237 AATT
1 AATT
85122241 TAGTAAAAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 27 0.90
32 3 0.10
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.45
Consensus pattern (31 bp):
AATTCAACTCTTTTTAAAAGATTGATGGTTA
Found at i:85123818 original size:17 final size:16
Alignment explanation
Indices: 85123796--85123871 Score: 80
Period size: 17 Copynumber: 4.6 Consensus size: 16
85123786 CTATACATGT
85123796 GAACCCTCTTTGTATGC
1 GAACCC-CTTTGTATGC
*
85123813 GAACCCCCTTGTATGC
1 GAACCCCTTTGTATGC
* *
85123829 GAGCCCCTTTTGTACGC
1 GAACCCC-TTTGTATGC
* *
85123846 GAACACCCTTGGTATGT
1 GAAC-CCCTTTGTATGC
85123863 GAACCCCTT
1 GAACCCCTT
85123872 ATAGTGAGCT
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
16 20 0.41
17 26 0.53
18 3 0.06
ACGTcount: A:0.18, C:0.33, G:0.20, T:0.29
Consensus pattern (16 bp):
GAACCCCTTTGTATGC
Found at i:85123841 original size:33 final size:34
Alignment explanation
Indices: 85123799--85123871 Score: 94
Period size: 33 Copynumber: 2.1 Consensus size: 34
85123789 TACATGTGAA
* * *
85123799 CCCTCTTTGTATGCGAACCCCCTT-GTATGCGAGC
1 CCCT-TTTGTACGCGAACACCCTTGGTATGCGAAC
*
85123833 CCCTTTTGTACGCGAACACCCTTGGTATGTGAAC
1 CCCTTTTGTACGCGAACACCCTTGGTATGCGAAC
85123867 CCCTT
1 CCCTT
85123872 ATAGTGAGCT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 17 0.50
34 17 0.50
ACGTcount: A:0.16, C:0.34, G:0.19, T:0.30
Consensus pattern (34 bp):
CCCTTTTGTACGCGAACACCCTTGGTATGCGAAC
Found at i:85130462 original size:46 final size:46
Alignment explanation
Indices: 85130377--85130501 Score: 119
Period size: 46 Copynumber: 2.7 Consensus size: 46
85130367 CTCGCACACT
* * * * *
85130377 AAGTACCTATACCATGGCCCAAAGCCAATTCAAGGTAACT-TATCCA
1 AAGTA-CTATACCATGGCCCGAAGCCAAATCAAGATAACTCCACCCA
*
85130423 AAGTACTGATACCATGGCCCGAAGCCAAATC-AGTATAACTCGCACCCG
1 AAGTACT-ATACCATGGCCCGAAGCCAAATCAAG-ATAACTC-CACCCA
* *
85130471 AAGTGCTAATATCATGGCCCGAAGCCAAATC
1 AAGTACT-ATACCATGGCCCGAAGCCAAATC
85130502 CATGTATCTC
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
45 4 0.06
46 31 0.47
48 31 0.47
ACGTcount: A:0.35, C:0.29, G:0.17, T:0.19
Consensus pattern (46 bp):
AAGTACTATACCATGGCCCGAAGCCAAATCAAGATAACTCCACCCA
Found at i:85142491 original size:20 final size:21
Alignment explanation
Indices: 85142468--85142509 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
85142458 TATGTATGAG
*
85142468 TTTTGAA-GTTTCTTGATAGA
1 TTTTGAATGCTTCTTGATAGA
*
85142488 TTTTGAATGCTTGTTGATAGA
1 TTTTGAATGCTTCTTGATAGA
85142509 T
1 T
85142510 ATATAAGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.24, C:0.05, G:0.21, T:0.50
Consensus pattern (21 bp):
TTTTGAATGCTTCTTGATAGA
Found at i:85143159 original size:29 final size:28
Alignment explanation
Indices: 85143126--85143181 Score: 94
Period size: 29 Copynumber: 2.0 Consensus size: 28
85143116 GAGTTATACC
85143126 GATTTGGCTACGGGCCATGCATATCAGTT
1 GATTTGGCTACGGGCCATG-ATATCAGTT
*
85143155 GATTTGGCTTCGGGCCATGATATCAGT
1 GATTTGGCTACGGGCCATGATATCAGT
85143182 ACATTGAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 8 0.31
29 18 0.69
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.32
Consensus pattern (28 bp):
GATTTGGCTACGGGCCATGATATCAGTT
Found at i:85144185 original size:37 final size:37
Alignment explanation
Indices: 85143993--85144174 Score: 285
Period size: 37 Copynumber: 4.9 Consensus size: 37
85143983 GCTCAGATGA
** * *
85143993 AATCTCCACACAAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
85144030 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
85144067 AATCTCCATACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
85144104 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA-AT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
85144140 ATATTTCCACACGTAGTCATCGGGTCTTACTCGGA
1 A-ATCTCCACACGTAGTCATCGGGTCTTACCCGGA
85144175 ATATATTTCC
Statistics
Matches: 136, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
36 3 0.02
37 133 0.98
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:85144818 original size:50 final size:48
Alignment explanation
Indices: 85144321--85144811 Score: 838
Period size: 48 Copynumber: 10.1 Consensus size: 48
85144311 ACACATCGCC
*
85144321 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
85144369 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
85144417 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
85144465 TACATATTTCACATTAGCCATTCGGATTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
85144513 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
85144561 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
85144611 TATATATTTCACATTAGCCATTCGGCTTTACCACACATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
85144661 TATATATTTCACATTAGCCATTCGGCTTTACCATATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
85144709 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
*
85144759 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
85144807 TACAT
1 TACAT
85144812 CAATTTCCGC
Statistics
Matches: 426, Mismatches: 13, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
48 285 0.67
50 141 0.33
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:85148143 original size:30 final size:30
Alignment explanation
Indices: 85148108--85148168 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
85148098 AATTGGTATA
85148108 TTTGTGGAATTGAGCATATTAATGCATATT
1 TTTGTGGAATTGAGCATATTAATGCATATT
85148138 TTTGTGGAATTGAGCATATTAATGCATATT
1 TTTGTGGAATTGAGCATATTAATGCATATT
85148168 T
1 T
85148169 GTAAATGATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.44
Consensus pattern (30 bp):
TTTGTGGAATTGAGCATATTAATGCATATT
Found at i:85148576 original size:12 final size:12
Alignment explanation
Indices: 85148559--85148588 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
85148549 TATAGGTTTG
85148559 GCATGGCCTGGC
1 GCATGGCCTGGC
85148571 GCATGGCCTGGC
1 GCATGGCCTGGC
*
85148583 ACATGG
1 GCATGG
85148589 GCGTGTATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.13, C:0.30, G:0.40, T:0.17
Consensus pattern (12 bp):
GCATGGCCTGGC
Found at i:85148936 original size:16 final size:17
Alignment explanation
Indices: 85148912--85148949 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
85148902 AAATTGATTA
*
85148912 GTATTGATTGA-TAAAT
1 GTATGGATTGATTAAAT
85148928 GTATGGATTGATTAAAT
1 GTATGGATTGATTAAAT
85148945 GTATG
1 GTATG
85148950 TGAAAAGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.34, C:0.00, G:0.24, T:0.42
Consensus pattern (17 bp):
GTATGGATTGATTAAAT
Found at i:85151161 original size:49 final size:50
Alignment explanation
Indices: 85150853--85151173 Score: 198
Period size: 46 Copynumber: 6.7 Consensus size: 50
85150843 TTATGGGAGC
* * * *
85150853 CAGTGTAAGACCATGTCTGGGACATGGCATC-GAATTTGAGA--CGAGAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCA-TAGATATGTGAGAGT
** * * * *
85150900 CTAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCTCGAGATGT-A-AGC
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCAGCATAGATATGTGAGAGT
* * *
85150947 CAGTGTAAGA-CATGTCTAGGACAT-GCATCGGC-TACGAGATGT----GT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCATA-GATATGTGAGAGT
* * * * * ** *
85150991 AAGTGTAAGACCATGTCTCGGACATGGCATCGGCACATATA-AAG-GTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCATAGATATGTGAGAGT
85151039 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCATAGATATGTGAGAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCATAGATATGTGAGAGT
* * * * *
85151088 CTAGTGCAAGACCATGTCTAGGACATGGCGTCAGCCTCA-AT-T-TCGATAGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCAGCAT-AGATATGT-GAGAGT
*
85151138 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCAT
85151174 TATACCTTAT
Statistics
Matches: 222, Mismatches: 34, Indels: 34
0.77 0.12 0.12
Matches are distributed among these distances:
44 10 0.05
45 14 0.06
46 57 0.26
47 19 0.09
48 48 0.22
49 37 0.17
50 36 0.16
51 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (50 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCAGCATAGATATGTGAGAGT
Found at i:85151819 original size:37 final size:37
Alignment explanation
Indices: 85151771--85151852 Score: 155
Period size: 37 Copynumber: 2.2 Consensus size: 37
85151761 CTATGGTTTT
*
85151771 TTGGCTGAGAAATCATATTAAGTTAGATTTTGATTTA
1 TTGGTTGAGAAATCATATTAAGTTAGATTTTGATTTA
85151808 TTGGTTGAGAAATCATATTAAGTTAGATTTTGATTTA
1 TTGGTTGAGAAATCATATTAAGTTAGATTTTGATTTA
85151845 TTGGTTGA
1 TTGGTTGA
85151853 TGATAGATTG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.30, C:0.04, G:0.21, T:0.45
Consensus pattern (37 bp):
TTGGTTGAGAAATCATATTAAGTTAGATTTTGATTTA
Found at i:85163943 original size:24 final size:24
Alignment explanation
Indices: 85163855--85163944 Score: 98
Period size: 23 Copynumber: 3.9 Consensus size: 24
85163845 GAGCTGATGG
85163855 ACAGTAAGCT-TTATTGAGCTAAA
1 ACAGTAAGCTCTTATTGAGCTAAA
**
85163878 ATGGTAAGCTC-TATTGAGCTAAA
1 ACAGTAAGCTCTTATTGAGCTAAA
* * *
85163901 ACGGTAAGCTCTGA-CGAGCTAAAA
1 ACAGTAAGCTCTTATTGAGCT-AAA
85163925 ACAGTAAGCTCTTA-TGAGCT
1 ACAGTAAGCTCTTATTGAGCT
85163945 GATATATCGG
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
23 35 0.62
24 21 0.38
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.27
Consensus pattern (24 bp):
ACAGTAAGCTCTTATTGAGCTAAA
Found at i:85179998 original size:36 final size:36
Alignment explanation
Indices: 85179955--85180028 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
85179945 TTTAACTTGG
* *
85179955 GATAATTTTTTGTTTTTATTGAATAAAGTCTGACTT
1 GATAATTTTTTCTTTTTATTGAATAAAGCCTGACTT
85179991 GATAATTTTTTCTTTTTATTGAATAAAGCCTGACTT
1 GATAATTTTTTCTTTTTATTGAATAAAGCCTGACTT
85180027 GA
1 GA
85180029 GGTCAGTTGG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.28, C:0.08, G:0.14, T:0.50
Consensus pattern (36 bp):
GATAATTTTTTCTTTTTATTGAATAAAGCCTGACTT
Found at i:85181352 original size:38 final size:39
Alignment explanation
Indices: 85181261--85181354 Score: 118
Period size: 40 Copynumber: 2.4 Consensus size: 39
85181251 CGGTACCTTT
* * *
85181261 TGGTGTGTAGGGTTGGATGGGTTGATTATATCCCTATACT
1 TGGTGTGTAGGGTTGGATGGGTCGATTATATCCC-ACACA
* *
85181301 TGGTGTGTAGGGTTGGGTGGGTCGATTCTATCCC-CACA
1 TGGTGTGTAGGGTTGGATGGGTCGATTATATCCCACACA
*
85181339 TGGTGTGTTGGGTTGG
1 TGGTGTGTAGGGTTGG
85181355 TCGGAGATGG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
38 17 0.35
40 31 0.65
ACGTcount: A:0.13, C:0.12, G:0.38, T:0.37
Consensus pattern (39 bp):
TGGTGTGTAGGGTTGGATGGGTCGATTATATCCCACACA
Found at i:85195938 original size:40 final size:40
Alignment explanation
Indices: 85195883--85196159 Score: 455
Period size: 40 Copynumber: 6.9 Consensus size: 40
85195873 GCATGAGCAT
85195883 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
85195923 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
85195963 TTGATAAATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* *
85196003 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * *
85196043 TTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
85196083 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * * *
85196123 TTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
85196160 TTGCGGTTAT
Statistics
Matches: 221, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 221 1.00
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
Found at i:85199773 original size:27 final size:27
Alignment explanation
Indices: 85199743--85199920 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
85199733 ATATTGAGCC
* * * *
85199743 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
85199770 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
85199797 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
85199825 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
85199852 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
85199879 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
85199906 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
85199921 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:85199882 original size:82 final size:81
Alignment explanation
Indices: 85199764--85199919 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
85199754 TGCTATATAA
* *
85199764 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
85199829 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
85199846 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
85199910 CACTTAGTGC
65 CACTTAGTGC
85199920 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:85200485 original size:13 final size:13
Alignment explanation
Indices: 85200467--85200491 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85200457 TACTAAATTT
85200467 TCATGGATTCAAG
1 TCATGGATTCAAG
85200480 TCATGGATTCAA
1 TCATGGATTCAA
85200492 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:85207671 original size:27 final size:27
Alignment explanation
Indices: 85207608--85207783 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
85207598 ATATTGAGCC
* * * *
85207608 CGCACACTCAGTGCTATATAATC-ACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
85207634 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
85207661 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
85207689 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
85207716 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
85207743 CGCACACTTAGTGCAACATAGTC-AAT
1 CGCACACTTAGTGCTACATAGTCAAAT
85207769 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
85207784 GTACAATTTA
Statistics
Matches: 128, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
26 35 0.27
27 69 0.54
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:85207700 original size:55 final size:54
Alignment explanation
Indices: 85207608--85207783 Score: 196
Period size: 55 Copynumber: 3.3 Consensus size: 54
85207598 ATATTGAGCC
* * * * *
85207608 CGCACACTCAGTGCTATATAATC-ACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
85207661 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
85207716 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTC-AAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
85207769 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
85207784 GTACAATTTA
Statistics
Matches: 103, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
53 36 0.35
54 23 0.22
55 44 0.43
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:85207727 original size:82 final size:80
Alignment explanation
Indices: 85207633--85207782 Score: 221
Period size: 82 Copynumber: 1.9 Consensus size: 80
85207623 ATATAATCAC
* *
85207633 TCGCACACTTAGTGC-TACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACT
1 TCGCACACTTAGTGCAT-CATAATCAAATCGCACACTTAGTGCAACATAGTC-AA-TCGCACACT
85207697 TAGTGCCGCATGGTCAAT
63 TAGTGCCGCATGGTCAAT
* **
85207715 TCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAATCGCACACTTAG
1 TCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAATCGCACACTTAG
85207780 TGC
66 TGC
85207783 TGTACAATTT
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
80 15 0.24
81 2 0.03
82 44 0.71
83 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (80 bp):
TCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAATCGCACACTTAG
TGCCGCATGGTCAAT
Found at i:85208349 original size:13 final size:13
Alignment explanation
Indices: 85208331--85208355 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85208321 TACTAAATTT
85208331 TCATGGATTCAAG
1 TCATGGATTCAAG
85208344 TCATGGATTCAA
1 TCATGGATTCAA
85208356 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:85222900 original size:28 final size:28
Alignment explanation
Indices: 85222860--85222924 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
85222850 ATGTACTAGA
* *
85222860 ATACCACTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TGT
85222888 ATACCCCTATGTATGCAAAATGACCTGT
1 ATACCCCTATGTATGCAAAATGACCTGT
85222916 ATACCCCTA
1 ATACCCCTA
85222925 GGGTTAATTC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.35, C:0.26, G:0.09, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTGT
Found at i:85223091 original size:27 final size:28
Alignment explanation
Indices: 85223030--85223144 Score: 92
Period size: 27 Copynumber: 4.1 Consensus size: 28
85223020 AGGAAGCATC
* * * *
85223030 CTGGTGGCTATGCGACAAATTATATG-TT
1 CTGGTGGCTCTGCCACATA-TATCTGTTT
85223058 CTGGTGGCTCTGCCACATATATCT-TTT
1 CTGGTGGCTCTGCCACATATATCTGTTT
* * *
85223085 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCTCTGCCAC-ATATATCTGTTT
* * * *
85223114 CTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTCTGCCACATATATCTGTTT
85223141 CTGG
1 CTGG
85223145 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
27 33 0.46
28 24 0.33
29 15 0.21
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACATATATCTGTTT
Found at i:85223130 original size:29 final size:28
Alignment explanation
Indices: 85223030--85223130 Score: 105
Period size: 27 Copynumber: 3.6 Consensus size: 28
85223020 AGGAAGCATC
* * * *
85223030 CTGGTGGCTATGCGACAAATTATATGTT
1 CTGGTGGCTCTGCCACAAAATATCTGTT
* *
85223058 CTGGTGGCTCTGCCAC-ATATATCTTTT
1 CTGGTGGCTCTGCCACAAAATATCTGTT
*
85223085 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCTCTGCCACAAAATATCTGT-T
* *
85223114 CTGGTGACTCTGTCACA
1 CTGGTGGCTCTGCCACA
85223131 TTTTCTGTAT
Statistics
Matches: 59, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
27 22 0.37
28 22 0.37
29 15 0.25
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAAAATATCTGTT
Found at i:85223144 original size:56 final size:55
Alignment explanation
Indices: 85223030--85223144 Score: 126
Period size: 55 Copynumber: 2.1 Consensus size: 55
85223020 AGGAAGCATC
* * * *
85223030 CTGGTGGCTATGCGACAAATTATATGTTCTGGTGGCTCTGCCACATATATCTTTT
1 CTGGTGGCTATGCCACAAAATATATGTTCTGGTGACTCTGCCACATATATCTTAT
* * *
85223085 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATATGT-TCTGGTGACTCTGCCACATATATCT-TAT
85223141 CTGG
1 CTGG
85223145 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 26 0.52
56 23 0.46
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (55 bp):
CTGGTGGCTATGCCACAAAATATATGTTCTGGTGACTCTGCCACATATATCTTAT
Found at i:85228407 original size:79 final size:81
Alignment explanation
Indices: 85228267--85228451 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
85228257 TTGAATGATG
* *
85228267 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
85228331 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * * **
85228346 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCTGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
85228408 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
85228426 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
85228452 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:85228465 original size:40 final size:40
Alignment explanation
Indices: 85228268--85228451 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
85228258 TGAATGATGT
* * * *
85228268 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
85228308 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
85228348 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* * *
85228386 TCTGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
85228427 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
85228452 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:85228473 original size:79 final size:79
Alignment explanation
Indices: 85228320--85228484 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
85228310 GGACTAAGAT
* * **
85228320 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
* *
85228385 ATCTGGGTTAAGTC
66 ATCTCGGTTAAATC
* *
85228399 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
85228462 TATATC-CGGTTAAATT
63 TAAATCTCGGTTAAATC
85228478 CCGAAGG
1 CCGAAGG
85228485 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCTCGGTTAAATC
Found at i:85233951 original size:26 final size:27
Alignment explanation
Indices: 85233915--85233997 Score: 111
Period size: 26 Copynumber: 3.2 Consensus size: 27
85233905 TACTAGAATA
85233915 CCCTATGTATGCAAATTACCATTATAC
1 CCCTATGTATGCAAATTACCATTATAC
85233942 CCCTAT-TATGCAAATTACCA-T-TA-
1 CCCTATGTATGCAAATTACCATTATAC
* *
85233965 CCCTATGTATGCAAAATGACCTTTATAC
1 CCCTATGTATGC-AAATTACCATTATAC
85233993 CCCTA
1 CCCTA
85233998 GGGTTAATTC
Statistics
Matches: 49, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
23 6 0.12
24 7 0.14
25 8 0.16
26 15 0.31
27 8 0.16
28 5 0.10
ACGTcount: A:0.33, C:0.28, G:0.07, T:0.33
Consensus pattern (27 bp):
CCCTATGTATGCAAATTACCATTATAC
Found at i:85234179 original size:27 final size:28
Alignment explanation
Indices: 85234113--85234183 Score: 101
Period size: 27 Copynumber: 2.6 Consensus size: 28
85234103 CTGGTGGTTG
* *
85234113 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGGCAC
*
85234141 TGCCAC-ATATATCTGTT-TGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGGCAC
85234167 TGCCACAAAATATCTGT
1 TGCCACAAAATATCTGT
85234184 AGCTGGTGAC
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 14 0.37
27 18 0.47
28 6 0.16
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGGCAC
Found at i:85235303 original size:11 final size:10
Alignment explanation
Indices: 85235275--85235308 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
85235265 AGCCTGTAAG
85235275 TATTCTGAAT
1 TATTCTGAAT
*
85235285 TTTTCTGAAT
1 TATTCTGAAT
85235295 ATATTCTGAAT
1 -TATTCTGAAT
85235306 TAT
1 TAT
85235309 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:85239405 original size:8 final size:8
Alignment explanation
Indices: 85239392--85239423 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
85239382 CTAGATCGGC
85239392 AAAAGCCG
1 AAAAGCCG
85239400 AAAAGCCG
1 AAAAGCCG
*
85239408 AAATGCCG
1 AAAAGCCG
85239416 AAAAGCCG
1 AAAAGCCG
85239424 TTATTTTGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:85239711 original size:28 final size:28
Alignment explanation
Indices: 85239671--85239762 Score: 148
Period size: 28 Copynumber: 3.3 Consensus size: 28
85239661 TGTACTAGAT
*
85239671 TACCCCTATGTATGCAAAATTACCATAA
1 TACCCCTATGTATGCAAAATTACCATTA
*
85239699 TACCCCTATGTATGGAAAATTACCATTA
1 TACCCCTATGTATGCAAAATTACCATTA
* *
85239727 TACCCCTATGTATGCAAAATGACCTTTA
1 TACCCCTATGTATGCAAAATTACCATTA
85239755 TACCCCTA
1 TACCCCTA
85239763 GGGTTAATTC
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 59 1.00
ACGTcount: A:0.35, C:0.26, G:0.09, T:0.30
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATTACCATTA
Found at i:85239922 original size:27 final size:28
Alignment explanation
Indices: 85239868--85239957 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
85239858 AGGAAGCGTC
*
85239868 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* * *
85239896 CTGGTGGCCCTGCTAC-ATATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
85239923 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
85239952 CTGGTG
1 CTGGTG
85239958 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.33
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:85239976 original size:55 final size:56
Alignment explanation
Indices: 85239868--85239982 Score: 139
Period size: 55 Copynumber: 2.1 Consensus size: 56
85239858 AGGAAGCGTC
* *
85239868 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCTACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCTACATATATCTGTAT
* *
85239923 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTG-TCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCT-ACATATATCTGTAT
85239979 CTGG
1 CTGG
85239983 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
54 1 0.02
55 31 0.60
56 20 0.38
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCTACATATATCTGTAT
Found at i:85257911 original size:13 final size:13
Alignment explanation
Indices: 85257893--85257920 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
85257883 TTTGGGGTAA
85257893 ACGGCCATGGAAC
1 ACGGCCATGGAAC
85257906 ACGGCCATGGAAC
1 ACGGCCATGGAAC
85257919 AC
1 AC
85257921 ACCCGTGTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.32, G:0.29, T:0.07
Consensus pattern (13 bp):
ACGGCCATGGAAC
Found at i:85271004 original size:22 final size:19
Alignment explanation
Indices: 85270962--85271004 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 19
85270952 TTCATCACTC
*
85270962 AATTATTAATTTTTTATTT
1 AATTATTAATTTTTTAATT
85270981 AATTATTCAAATTTTTTAAATT
1 AATTATT--AATTTTTT-AATT
85271003 AA
1 AA
85271005 ATAATTTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 7 0.35
21 8 0.40
22 5 0.25
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (19 bp):
AATTATTAATTTTTTAATT
Found at i:85272310 original size:78 final size:77
Alignment explanation
Indices: 85272180--85272443 Score: 285
Period size: 78 Copynumber: 3.5 Consensus size: 77
85272170 AGCCCCAAAA
* * * * *
85272180 CCCCAAATTCTTTTCCCCAGATTAATTCCCCCTCTTCTCAAAATCCCTAAGTTTTTTTTCCCAAA
1 CCCCAATTTCTTTTCCCCAAATCAATT-CCCCTCTCCCCAAAATCCCTAAG-TTTTTTTCCCAAA
85272245 CCCCTTTCTTTTTT
64 CCCCTTTCTTTTTT
* * *
85272259 CCCCAATTTC-TTTCCCCAAATCAATTCTCCCTCTCCCCGAAATCCCTAAGTTTCTTTCCCAGAC
1 CCCCAATTTCTTTTCCCCAAATCAATTC-CCCTCTCCCCAAAATCCCTAAGTTTTTTTCCCAAAC
85272323 CCCTTTCTGTTTTT
65 CCCTTTCT-TTTTT
* ** *
85272337 -CCCAATTT-TTTT-CCCAAATCAATTCCCCT-ACCCCAAAATCCCTAA-TTTTTTT-AGAAATC
1 CCCCAATTTCTTTTCCCCAAATCAATTCCCCTCTCCCCAAAATCCCTAAGTTTTTTTCCCAAACC
*
85272396 CCGTT-TTTTTT
66 CCTTTCTTTTTT
** *
85272407 CCTGAATTTCTTTTCCCCAAATCAGTTCCCC-CTCCCC
1 CCCCAATTTCTTTTCCCCAAATCAATTCCCCTCTCCCC
85272444 GATATATGCG
Statistics
Matches: 158, Mismatches: 20, Indels: 20
0.80 0.10 0.10
Matches are distributed among these distances:
70 5 0.03
71 7 0.04
72 11 0.07
73 25 0.16
74 14 0.09
75 4 0.03
76 13 0.08
77 32 0.20
78 38 0.24
79 9 0.06
ACGTcount: A:0.20, C:0.37, G:0.04, T:0.39
Consensus pattern (77 bp):
CCCCAATTTCTTTTCCCCAAATCAATTCCCCTCTCCCCAAAATCCCTAAGTTTTTTTCCCAAACC
CCTTTCTTTTTT
Found at i:85273080 original size:12 final size:12
Alignment explanation
Indices: 85273063--85273088 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
85273053 ATAATTAAAA
85273063 TATTTTATTTGT
1 TATTTTATTTGT
85273075 TATTTTATTTGT
1 TATTTTATTTGT
85273087 TA
1 TA
85273089 AGGCAGAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.08, T:0.73
Consensus pattern (12 bp):
TATTTTATTTGT
Found at i:85279127 original size:42 final size:43
Alignment explanation
Indices: 85279015--85279129 Score: 133
Period size: 43 Copynumber: 2.7 Consensus size: 43
85279005 ACATTTTCCA
* * ** * * *
85279015 AAAAACGCCGCTAAAGAACATAATCTTTAACAGCACTTTTCCC
1 AAAAACGCCACTAAAGATCATGTTCTTTAGCAACACTTTTACC
85279058 AAAAACGCCACTAAAGATCATGTTCTTTAGCAACACTTTTACC
1 AAAAACGCCACTAAAGATCATGTTCTTTAGCAACACTTTTACC
** *
85279101 ACTAACGCC-CTAAAGGTCATGTTCTTTAG
1 AAAAACGCCACTAAAGATCATGTTCTTTAG
85279130 TGGCGTTTTT
Statistics
Matches: 62, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 19 0.31
43 43 0.69
ACGTcount: A:0.36, C:0.26, G:0.11, T:0.27
Consensus pattern (43 bp):
AAAAACGCCACTAAAGATCATGTTCTTTAGCAACACTTTTACC
Found at i:85279629 original size:19 final size:20
Alignment explanation
Indices: 85279593--85279632 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
85279583 GGTGGATTTT
85279593 TATTTTATTTAATATTAATA
1 TATTTTATTTAATATTAATA
85279613 TATTTATATTT-AT-TTAATA
1 TATTT-TATTTAATATTAATA
85279632 T
1 T
85279633 TAATATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
20 7 0.37
21 5 0.26
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TATTTTATTTAATATTAATA
Found at i:85279629 original size:25 final size:24
Alignment explanation
Indices: 85279591--85279639 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 24
85279581 GTGGTGGATT
85279591 TTTATTTTATTTAATATTAATATA
1 TTTATTTTATTTAATATTAATATA
85279615 TTTATATTTATTTAATATTAATATA
1 TTTAT-TTTATTTAATATTAATATA
85279640 AAATGTGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTATTTTATTTAATATTAATATA
Found at i:85288509 original size:27 final size:27
Alignment explanation
Indices: 85288479--85288656 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
85288469 ATATTGAGTC
* * * *
85288479 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
85288506 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
85288533 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
85288561 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
85288588 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
85288615 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
85288642 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
85288657 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:85288618 original size:82 final size:81
Alignment explanation
Indices: 85288500--85288655 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
85288490 TGCTATATAA
* *
85288500 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
85288565 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
85288582 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
85288646 CACTTAGTGC
65 CACTTAGTGC
85288656 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:85293722 original size:14 final size:13
Alignment explanation
Indices: 85293705--85293753 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
85293695 AAATTAAAAA
85293705 AAAAAGAATCAATC
1 AAAAA-AATCAATC
**
85293719 -AAAAAATCAAAA
1 AAAAAAATCAATC
85293731 AAAAAGAATCAATC
1 AAAAA-AATCAATC
85293745 AAAAAAATC
1 AAAAAAATC
85293754 GAAAAAAGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
12 6 0.21
13 12 0.41
14 11 0.38
ACGTcount: A:0.71, C:0.12, G:0.04, T:0.12
Consensus pattern (13 bp):
AAAAAAATCAATC
Found at i:85293751 original size:27 final size:27
Alignment explanation
Indices: 85293691--85293767 Score: 111
Period size: 26 Copynumber: 2.8 Consensus size: 27
85293681 TTGAGACCTT
*
85293691 AAAAAAATTAAAAAAAAAAGAATCAATC
1 AAAAAAA-TCAAAAAAAAAGAATCAATC
85293719 -AAAAAATCAAAAAAAAAGAATCAATC
1 AAAAAAATCAAAAAAAAAGAATCAATC
85293745 AAAAAAATCGAAAAAAGAAAGAA
1 AAAAAAATC-AAAAAA-AAAGAA
85293768 AAATGAGAGG
Statistics
Matches: 45, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
26 19 0.42
27 14 0.31
28 6 0.13
29 6 0.13
ACGTcount: A:0.75, C:0.08, G:0.06, T:0.10
Consensus pattern (27 bp):
AAAAAAATCAAAAAAAAAGAATCAATC
Found at i:85305971 original size:44 final size:44
Alignment explanation
Indices: 85305917--85306356 Score: 248
Period size: 44 Copynumber: 9.5 Consensus size: 44
85305907 GATTGAATAC
* * **
85305917 CTTATTTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTAGTAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTAGTAAGT
*
85305961 CTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATAGCTAA-T
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-TAG-TAAGT
* * * * * *
85306006 CTTATTTACCTGAAGATGCAGTGGAACAGATTGAAGCTATAAATAAATAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG---T-AGT--A-AG-T
* * * * * * **
85306058 ATTATCTCTCTGAAGTTGCAGTAGAGTAGA-T-CA-TAGCAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTAGTAAGT
* * *
85306099 CTTATCTCCCTGAAGTTGCAGTGAAGCAGTTGCAGTGAAGCAGGTTGAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCA---G-ACTGAAGTA-G-T-AAGT
* * * *
85306150 AGC-AAGTCTTATCCCTCTGAAGTTGCAATGGAGCAGACTGAAG-ATTGAAGAC
1 --CTTA-TC---TCCCT--GAAGTTGCAGTGGAGCAGACTGAAGTAGT-AAG-T
** *
85306202 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAATTAGTAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTAGTAAGT
* *
85306246 CTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGTTA-TGAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-TAGTAAGT
* *
85306290 CTTATCTCTCTGAAGTTGCAGTGGAGCAAACTGAAGATAGTGAA-T
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-TAGT-AAGT
*
85306335 CTTATCTCTCTGAAGTTGCAGT
1 CTTATCTCCCTGAAGTTGCAGT
85306357 AAAAGAGATC
Statistics
Matches: 304, Mismatches: 58, Indels: 67
0.71 0.14 0.16
Matches are distributed among these distances:
41 23 0.08
42 1 0.00
43 1 0.00
44 103 0.34
45 86 0.28
46 8 0.03
47 9 0.03
48 2 0.01
49 2 0.01
50 5 0.02
51 9 0.03
52 24 0.08
53 4 0.01
54 6 0.02
55 1 0.00
56 5 0.02
58 15 0.05
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTAGTAAGT
Found at i:85306131 original size:14 final size:14
Alignment explanation
Indices: 85306112--85306141 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
85306102 ATCTCCCTGA
85306112 AGTTGCAGTGAAGC
1 AGTTGCAGTGAAGC
85306126 AGTTGCAGTGAAGC
1 AGTTGCAGTGAAGC
85306140 AG
1 AG
85306142 GTTGAAGTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.13, G:0.37, T:0.20
Consensus pattern (14 bp):
AGTTGCAGTGAAGC
Found at i:85306277 original size:89 final size:88
Alignment explanation
Indices: 85306126--85306356 Score: 279
Period size: 89 Copynumber: 2.6 Consensus size: 88
85306116 GCAGTGAAGC
* * * *
85306126 AGTTGCAGTGAAGCAGGTTGAAGTAGCAAGTCTTATC-CCTCTGAAGTTGCAATGGAGCAGACTG
1 AGTTGCAGTGGAGCAGGTTGAAATAGTAAGTCTTATCTCC-CTGAAGTTGCAGTGGAGCAGACTG
85306190 AAGATTGAAGA-CCTTATCTCCCTGA
65 AAG-TT-AAGAGCCTTATCTCCCTGA
* *
85306215 AGTTGCAGTGGAGCAGGTTGAATTAGTAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGA
1 AGTTGCAGTGGAGCAGGTTGAAATAGTAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGA
* * *
85306280 AGTTATGAGTCTTATCTCTCTGA
66 AGTTAAGAGCCTTATCTCCCTGA
*** *
85306303 AGTTGCAGTGGAGCAAACTGAAGATAGTGAA-TCTTATCTCTCTGAAGTTGCAGT
1 AGTTGCAGTGGAGCAGGTTGAA-ATAGT-AAGTCTTATCTCCCTGAAGTTGCAGT
85306357 AAAAGAGATC
Statistics
Matches: 125, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
87 3 0.02
88 33 0.26
89 85 0.68
90 4 0.03
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (88 bp):
AGTTGCAGTGGAGCAGGTTGAAATAGTAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGA
AGTTAAGAGCCTTATCTCCCTGA
Found at i:85306465 original size:94 final size:91
Alignment explanation
Indices: 85306245--85306494 Score: 224
Period size: 94 Copynumber: 2.7 Consensus size: 91
85306235 AATTAGTAAG
* * * * * *
85306245 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGTTATGAGTCTTATCTCTCTGAAGTTGC-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCTATAAATCCTATC-CTCTGAAGTTGCA
*
85306309 --AGTGGAGCAAACTGAAGATAGTGAA
65 GTAGTGGAGCAAACTGAACATAGTGAA
* ** *
85306334 TCTTATCTCTCTGAAGTTGCAGTAAAAG-AGATCAAAGCTATAAATCCTATACCTCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGT-GGAGTAGATTAAAGCTATAAATCCTAT-CCTCTGAAGTTGC
* * *
85306398 AGTAGCTCGGATCAAACCT-ACCATGGTGAA
64 AGTAG-T-GGAGCAAA-CTGAACATAGTGAA
* * * *
85306428 TCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTAAAGCCACAAA-CCTTATCCCCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCTATAAATCC-TAT-CCTCTGAAGTTGC
85306492 AGT
64 AGT
85306495 GGGGTAAGTT
Statistics
Matches: 128, Mismatches: 23, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
89 49 0.38
90 3 0.02
92 2 0.02
93 5 0.04
94 67 0.52
95 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (91 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCTATAAATCCTATCCTCTGAAGTTGCAG
TAGTGGAGCAAACTGAACATAGTGAA
Found at i:85306596 original size:88 final size:88
Alignment explanation
Indices: 85306432--85306596 Score: 188
Period size: 88 Copynumber: 1.9 Consensus size: 88
85306422 GGTGAATCTT
* * * * *
85306432 ATCTCCCTGAAGTTGTAGTGGAGTAGATTAAAGCCACAAACCTTATCCCCCTGAAGTTGCAGTGG
1 ATCTCCCTGAAGTTGTAGTGGAGCAGACTAAAGACACAAACCTTATCCCCCTGAAGTTGCAATGA
* *
85306497 GGTAAGTTCAAGTTACAAGTCTA
66 AGTAAGATCAAGTTACAAGTCTA
* * * * * *
85306520 ATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGCAGATCTTATCTCCTTGAAGTTGCAATG
1 ATCTCCCTGAAGTTGTAGTGGAGCAGACTAAAGACA-CAAACCTTATCCCCCTGAAGTTGCAATG
*
85306585 AAG-CAGATCAAG
65 AAGTAAGATCAAG
85306597 CTTAAATCGC
Statistics
Matches: 62, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
88 38 0.61
89 24 0.39
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (88 bp):
ATCTCCCTGAAGTTGTAGTGGAGCAGACTAAAGACACAAACCTTATCCCCCTGAAGTTGCAATGA
AGTAAGATCAAGTTACAAGTCTA
Found at i:85309990 original size:13 final size:13
Alignment explanation
Indices: 85309973--85310007 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
85309963 CAAGACACAC
85309973 ACCCGTGTGTCCT
1 ACCCGTGTGTCCT
*
85309986 GCCCGTGTGTCCT
1 ACCCGTGTGTCCT
85309999 ACCCGTGTG
1 ACCCGTGTG
85310008 CTAATTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.06, C:0.37, G:0.29, T:0.29
Consensus pattern (13 bp):
ACCCGTGTGTCCT
Found at i:85328432 original size:25 final size:26
Alignment explanation
Indices: 85328381--85328432 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
85328371 AGTACATGTA
*
85328381 AATTTTGTTATTATATAAATAAATAT
1 AATTTTATTATTATATAAATAAATAT
*
85328407 AATTTTATTTTTATAT-AATAAATAT
1 AATTTTATTATTATATAAATAAATAT
85328432 A
1 A
85328433 TAAATTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (26 bp):
AATTTTATTATTATATAAATAAATAT
Found at i:85330841 original size:20 final size:21
Alignment explanation
Indices: 85330808--85330846 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
85330798 TTTAATTTCA
*
85330808 AAAAATTGAGTAATTAAATTG
1 AAAAATTGAATAATTAAATTG
85330829 AAAAATT-AATAATTAAAT
1 AAAAATTGAATAATTAAAT
85330847 ATCTAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (21 bp):
AAAAATTGAATAATTAAATTG
Found at i:85332090 original size:34 final size:34
Alignment explanation
Indices: 85332052--85332119 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
85332042 TAATTAGTGT
85332052 TTGATTGAAACAAATAAACAGAGTTTAACTAAAA
1 TTGATTGAAACAAATAAACAGAGTTTAACTAAAA
85332086 TTGATTGAAACAAATAAACAGAGTTTAACTAAAA
1 TTGATTGAAACAAATAAACAGAGTTTAACTAAAA
85332120 GATTATTTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.53, C:0.09, G:0.12, T:0.26
Consensus pattern (34 bp):
TTGATTGAAACAAATAAACAGAGTTTAACTAAAA
Found at i:85335248 original size:42 final size:42
Alignment explanation
Indices: 85335200--85335282 Score: 148
Period size: 42 Copynumber: 2.0 Consensus size: 42
85335190 CAGAAATTTA
*
85335200 GTCGCATAAAGAGTTTTTAACCTTTTCCACAAGGCAAATGAT
1 GTCGCATAAAGAGTTTTTAACCTTTTCCACAAGGAAAATGAT
*
85335242 GTCGCATAAGGAGTTTTTAACCTTTTCCACAAGGAAAATGA
1 GTCGCATAAAGAGTTTTTAACCTTTTCCACAAGGAAAATGA
85335283 GGTTTTCTCC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (42 bp):
GTCGCATAAAGAGTTTTTAACCTTTTCCACAAGGAAAATGAT
Found at i:85341621 original size:57 final size:57
Alignment explanation
Indices: 85341533--85341640 Score: 171
Period size: 57 Copynumber: 1.9 Consensus size: 57
85341523 TTGTTCCAAC
* * * *
85341533 GAACATTATTATCTCTTGCTATCTCATGGACAGTTTGAGTTAATGTTAAAAGCTGAG
1 GAACATGACTATCTCTTGCTATCTCATGGACAATTTGAATTAATGTTAAAAGCTGAG
*
85341590 GAACATGACTATCTCTTGCTATTTCATGGACAATTTGAATTAATGTTAAAA
1 GAACATGACTATCTCTTGCTATCTCATGGACAATTTGAATTAATGTTAAAA
85341641 TAGTGTATGT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 46 1.00
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (57 bp):
GAACATGACTATCTCTTGCTATCTCATGGACAATTTGAATTAATGTTAAAAGCTGAG
Done.