Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 261 of 333
Found at i:86161962 original size:59 final size:59
Alignment explanation
Indices: 86161886--86162005 Score: 222
Period size: 59 Copynumber: 2.0 Consensus size: 59
86161876 ATAAATCGCA
86161886 AACCCAACTTCTATTTATGGCTAAATTGAGAAATGCTATATCCACAACAATACTTTCTC
1 AACCCAACTTCTATTTATGGCTAAATTGAGAAATGCTATATCCACAACAATACTTTCTC
* *
86161945 AACCCAACTTCTCTTTATGGCTAAATTGAGTAATGCTATATCCACAACAATACTTTCTC
1 AACCCAACTTCTATTTATGGCTAAATTGAGAAATGCTATATCCACAACAATACTTTCTC
86162004 AA
1 AA
86162006 AGACTTATTC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.33
Consensus pattern (59 bp):
AACCCAACTTCTATTTATGGCTAAATTGAGAAATGCTATATCCACAACAATACTTTCTC
Found at i:86167250 original size:43 final size:43
Alignment explanation
Indices: 86167189--86167306 Score: 166
Period size: 43 Copynumber: 2.7 Consensus size: 43
86167179 ATACAATGTC
* * * *
86167189 ATATCCCAAATATGGTCTTACATGTTATCTCATATCGATGCCA
1 ATATCCCAGACATGGTCTTACATGTAATCTCATAACGATGCCA
*
86167232 ATATCCCAGACATGGTCTTACATGAAATCAT-ATAACGATGCCA
1 ATATCCCAGACATGGTCTTACATGTAATC-TCATAACGATGCCA
*
86167275 ATGTCCCAGACATGGTCTTACATGTAATCTCA
1 ATATCCCAGACATGGTCTTACATGTAATCTCA
86167307 CCTCGGTAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
42 1 0.02
43 64 0.97
44 1 0.02
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.31
Consensus pattern (43 bp):
ATATCCCAGACATGGTCTTACATGTAATCTCATAACGATGCCA
Found at i:86169183 original size:61 final size:61
Alignment explanation
Indices: 86169088--86169205 Score: 236
Period size: 61 Copynumber: 1.9 Consensus size: 61
86169078 TAATTTAAGC
86169088 AAACATTGAGTTTCACATTTAAGTCTCTTCACATTCAACCTTAATACACACACCTAGCAGT
1 AAACATTGAGTTTCACATTTAAGTCTCTTCACATTCAACCTTAATACACACACCTAGCAGT
86169149 AAACATTGAGTTTCACATTTAAGTCTCTTCACATTCAACCTTAATACACACACCTAG
1 AAACATTGAGTTTCACATTTAAGTCTCTTCACATTCAACCTTAATACACACACCTAG
86169206 GCACATGCTA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.35, C:0.26, G:0.08, T:0.31
Consensus pattern (61 bp):
AAACATTGAGTTTCACATTTAAGTCTCTTCACATTCAACCTTAATACACACACCTAGCAGT
Found at i:86171419 original size:36 final size:36
Alignment explanation
Indices: 86171371--86171442 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
86171361 GTGAGAACAC
*
86171371 AATAGCTGATGGCTTTTTATAGCCATTCCATCCTTT
1 AATAGCTAATGGCTTTTTATAGCCATTCCATCCTTT
86171407 AATAGCTAATGGCTTTTTATAGCCATTCCATCCTTT
1 AATAGCTAATGGCTTTTTATAGCCATTCCATCCTTT
86171443 CTCTCTTTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.24, C:0.22, G:0.12, T:0.42
Consensus pattern (36 bp):
AATAGCTAATGGCTTTTTATAGCCATTCCATCCTTT
Found at i:86174922 original size:17 final size:17
Alignment explanation
Indices: 86174896--86174929 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
86174886 AATTTTTTTA
*
86174896 ATATTTGAAAAAAAATT
1 ATATTCGAAAAAAAATT
*
86174913 ATATTCGAAAATAAATT
1 ATATTCGAAAAAAAATT
86174930 TTAAAAAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.35
Consensus pattern (17 bp):
ATATTCGAAAAAAAATT
Found at i:86175449 original size:171 final size:171
Alignment explanation
Indices: 86175159--86175501 Score: 616
Period size: 171 Copynumber: 2.0 Consensus size: 171
86175149 TTAACTCAAA
86175159 TTTTTGTGTGTTTCAGCGCATTTTGATTAATATTGGTTTACATAATTGTATCATATTTGTTGATA
1 TTTTTGTGTGTTTCAGCGCATTTTGATTAATATTGGTTTACATAATTGTATCATATTTGTTGATA
*
86175224 CGTGATTTTGATATTTTAAATTAATTTTTAATAATTTATGTCTTAAAAATTTTTATTTTATTTTT
66 CGTGATTTTAATATTTTAAATTAATTTTTAATAATTTATGTCTTAAAAATTTTTATTTTATTTTT
86175289 AATAATTTTAAAAATAAAATATAATAAATAAATTAAATTAT
131 AATAATTTTAAAAATAAAATATAATAAATAAATTAAATTAT
*
86175330 TTTTATGTGTGTTTCAGCGCATTTTGATTAATA-TGGTTTACATAATTGTATCATATTTGTTTAT
1 TTTT-TGTGTGTTTCAGCGCATTTTGATTAATATTGGTTTACATAATTGTATCATATTTGTTGAT
* * * *
86175394 GCGTGATTTTAATATTTTAAATTAATTTTTAATAATTTGTTTCTTAAATATTTTTATTTTATTTT
65 ACGTGATTTTAATATTTTAAATTAATTTTTAATAATTTATGTCTTAAAAATTTTTATTTTATTTT
86175459 TAATAATTTTAAAAATAAAATATAATAAATAAATTAAATTAT
130 TAATAATTTTAAAAATAAAATATAATAAATAAATTAAATTAT
86175501 T
1 T
86175502 GATAAATATA
Statistics
Matches: 165, Mismatches: 6, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
171 137 0.83
172 28 0.17
ACGTcount: A:0.35, C:0.04, G:0.08, T:0.52
Consensus pattern (171 bp):
TTTTTGTGTGTTTCAGCGCATTTTGATTAATATTGGTTTACATAATTGTATCATATTTGTTGATA
CGTGATTTTAATATTTTAAATTAATTTTTAATAATTTATGTCTTAAAAATTTTTATTTTATTTTT
AATAATTTTAAAAATAAAATATAATAAATAAATTAAATTAT
Found at i:86176851 original size:24 final size:25
Alignment explanation
Indices: 86176823--86176871 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
86176813 CTTTTTTTAT
*
86176823 TAAATAAAAAAC-TTTAAAATATAA
1 TAAATAAAAAACATTTAAAACATAA
* *
86176847 TAAATCAAATACATTTAAAACATAA
1 TAAATAAAAAACATTTAAAACATAA
86176872 AAACAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (25 bp):
TAAATAAAAAACATTTAAAACATAA
Found at i:86176864 original size:25 final size:23
Alignment explanation
Indices: 86176835--86176899 Score: 66
Period size: 25 Copynumber: 2.9 Consensus size: 23
86176825 AATAAAAAAC
*
86176835 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAA-CAAATACA
86176860 TTTAAAACATAAAAACAAAT--A
1 TTTAAAACATAAAAACAAATACA
*
86176881 -TTAAAACA-AAAAATAAATA
1 TTTAAAACATAAAAACAAATA
86176900 AAAAATGGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 9 0.24
20 8 0.22
21 1 0.03
23 5 0.14
24 3 0.08
25 11 0.30
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (23 bp):
TTTAAAACATAAAAACAAATACA
Found at i:86176898 original size:19 final size:20
Alignment explanation
Indices: 86176861--86176899 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
86176851 TCAAATACAT
86176861 TTAAAACATAAAAACAAATA
1 TTAAAACATAAAAACAAATA
*
86176881 TTAAAACA-AAAAATAAATA
1 TTAAAACATAAAAACAAATA
86176900 AAAAATGGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.21
Consensus pattern (20 bp):
TTAAAACATAAAAACAAATA
Found at i:86177135 original size:17 final size:17
Alignment explanation
Indices: 86177090--86177137 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
86177080 TACTAAAGTT
*
86177090 ATTTAAAATTAAAAATA
1 ATTTAATATTAAAAATA
*** *
86177107 AAAAAATTTTAAAAATA
1 ATTTAATATTAAAAATA
86177124 ATTTAATATTAAAA
1 ATTTAATATTAAAA
86177138 TCGGGCGGGG
Statistics
Matches: 22, Mismatches: 9, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
ATTTAATATTAAAAATA
Found at i:86179874 original size:30 final size:29
Alignment explanation
Indices: 86179840--86179903 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 29
86179830 GCTTTCTTTC
86179840 TTTCCTCTTTTTTT-TTTCCAAAATACAACT
1 TTTCCT-TTTTTTTCTTT-CAAAATACAACT
86179870 TTTCCTTTTTTTTCCTTTCAAAATACAACT
1 TTTCCTTTTTTTT-CTTTCAAAATACAACT
86179900 TTTC
1 TTTC
86179904 ATTAATTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
29 7 0.22
30 22 0.69
31 3 0.09
ACGTcount: A:0.22, C:0.23, G:0.00, T:0.55
Consensus pattern (29 bp):
TTTCCTTTTTTTTCTTTCAAAATACAACT
Found at i:86182005 original size:46 final size:46
Alignment explanation
Indices: 86181955--86182127 Score: 194
Period size: 46 Copynumber: 3.7 Consensus size: 46
86181945 TGGTTGAGCA
*
86181955 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAATG
* *
86182001 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAA-T--G
*
86182046 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAATG
* * *
86182094 -CCTGAGCTCATTGAGTTGAGCCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
86182128 GGGCCAGGTT
Statistics
Matches: 109, Mismatches: 8, Indels: 20
0.80 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 58 0.53
47 30 0.28
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAATG
Found at i:86182111 original size:93 final size:93
Alignment explanation
Indices: 86181952--86182123 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
86181942 GGATGGTTGA
* * *
86181952 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAACGTCCGAACTCATTGAGT
*
86182017 TGAGTCCGAGTTCATGAGATGTAACTAG
66 TGAGCCCGAGTTCATGAGATGTAACTAG
*
86182045 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAACG-CCTGAGCTCATTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAACGTCC-GAACTCATTGAG
86182109 TTGAGCCCGAGTTCA
65 TTGAGCCCGAGTTCA
86182124 CTTAGGGCCA
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAACGTCCGAACTCATTGAGT
TGAGCCCGAGTTCATGAGATGTAACTAG
Found at i:86183025 original size:21 final size:20
Alignment explanation
Indices: 86182992--86183035 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
86182982 CTGTTCTGAA
*
86182992 TTTAAAAATTAATAATAAAT
1 TTTAAAAAGTAATAATAAAT
* *
86183012 TTTACAAAAGTAATTATAAGT
1 TTTA-AAAAGTAATAATAAAT
86183033 TTT
1 TTT
86183036 TATTTATATG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (20 bp):
TTTAAAAAGTAATAATAAAT
Found at i:86189467 original size:46 final size:45
Alignment explanation
Indices: 86189417--86189588 Score: 179
Period size: 46 Copynumber: 3.8 Consensus size: 45
86189407 TGGTTGAGCA
86189417 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
86189463 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAATAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAT--G
* * *
86189507 CATCCGGACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
86189555 CCCGAGCTCGTTGAGTTGCGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
86189589 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
44 1 0.01
45 2 0.02
46 86 0.82
47 2 0.02
48 1 0.01
49 4 0.04
50 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:86189571 original size:92 final size:92
Alignment explanation
Indices: 86189414--86189583 Score: 268
Period size: 92 Copynumber: 1.8 Consensus size: 92
86189404 GGATGGTTGA
* *
86189414 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
86189479 TGAGTCCGAGTTCGTGAGATGTAATAG
66 TGAGTCCGAGTTCGTGAGATGTAATAG
* * * *
86189506 GCATCCGGACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
* *
86189571 TGCGTCTGAGTTC
66 TGAGTCCGAGTTC
86189584 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
92 70 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAATAG
Found at i:86191892 original size:111 final size:111
Alignment explanation
Indices: 86191698--86191918 Score: 343
Period size: 111 Copynumber: 2.0 Consensus size: 111
86191688 GGTAAATTTC
**
86191698 TTTTTGAATAATTACTCCCATTAATAAAAGTCATTTTGAATTTAAGGCCAAAATAAAAAGATGGA
1 TTTTTGAATAATTACTCCCATTAATAAAAGTCATTTCAAATTTAAGGCCAAAATAAAAAGATGGA
*
86191763 CATATAATTGACATTCATTTTTACTTCAAGAAAAATGGTCACATAG
66 CATACAATTGACATTCATTTTTACTTCAAGAAAAATGGTCACATAG
* * * * * *
86191809 TTTTTGAATAATTGCTCCCCTTAATAAAAGTTATTTCAAATTTGAGGCCAAAATAAAAAGTTTGA
1 TTTTTGAATAATTACTCCCATTAATAAAAGTCATTTCAAATTTAAGGCCAAAATAAAAAGATGGA
* *
86191874 CATACAATTGACATTCATTTTTACTTTAAGGAAAATGGTCACATA
66 CATACAATTGACATTCATTTTTACTTCAAGAAAAATGGTCACATA
86191919 ATTTGCATAA
Statistics
Matches: 99, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
111 99 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (111 bp):
TTTTTGAATAATTACTCCCATTAATAAAAGTCATTTCAAATTTAAGGCCAAAATAAAAAGATGGA
CATACAATTGACATTCATTTTTACTTCAAGAAAAATGGTCACATAG
Found at i:86198118 original size:13 final size:13
Alignment explanation
Indices: 86198100--86198126 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
86198090 AGAGTAATCA
86198100 CACACGGGCGTGT
1 CACACGGGCGTGT
86198113 CACACGGGCGTGT
1 CACACGGGCGTGT
86198126 C
1 C
86198127 CTTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:86200990 original size:29 final size:29
Alignment explanation
Indices: 86200958--86201021 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
86200948 CCAAATTAAA
86200958 CACCCCACTAAACCGA-CCACTAAATCCAT
1 CACCCCACTAAACC-ATCCACTAAATCCAT
* **
86200987 CACCCTACTAAACCATCCACTACTTCCAT
1 CACCCCACTAAACCATCCACTAAATCCAT
86201016 CACCCC
1 CACCCC
86201022 TACACCCTAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 1 0.03
29 29 0.97
ACGTcount: A:0.33, C:0.48, G:0.02, T:0.17
Consensus pattern (29 bp):
CACCCCACTAAACCATCCACTAAATCCAT
Found at i:86201034 original size:37 final size:37
Alignment explanation
Indices: 86200987--86201058 Score: 135
Period size: 37 Copynumber: 1.9 Consensus size: 37
86200977 CTAAATCCAT
*
86200987 CACCCTACTAAACCATCCACTACTTCCATCACCCCTA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCTA
86201024 CACCCTACTAAACCATCCACTACCTCCATCACCCC
1 CACCCTACTAAACCATCCACTACCTCCATCACCCC
86201059 CACTAACTCC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.29, C:0.51, G:0.00, T:0.19
Consensus pattern (37 bp):
CACCCTACTAAACCATCCACTACCTCCATCACCCCTA
Found at i:86201063 original size:18 final size:18
Alignment explanation
Indices: 86201040--86201075 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
86201030 ACTAAACCAT
*
86201040 CCACTACCTCCATCACCC
1 CCACTAACTCCATCACCC
86201058 CCACTAACTCCATCACCC
1 CCACTAACTCCATCACCC
86201076 TACTTGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.58, G:0.00, T:0.17
Consensus pattern (18 bp):
CCACTAACTCCATCACCC
Found at i:86201476 original size:60 final size:61
Alignment explanation
Indices: 86201342--86201480 Score: 158
Period size: 60 Copynumber: 2.2 Consensus size: 61
86201332 TTTAACCCCT
* * *
86201342 TTTTTATTTTTTTATTTTACTGTTAAATTAATTAATTTGAGCTTTATTCTCATTATTTTTATA
1 TTTTTA-TTTATTATTTTACTATTAAATTAATTAATTTGAGC-TTATTCTCATTATTATTATA
* * *
86201405 TTTGTTTTTTATTATTTT-CTATTAATTTAATTAATTTGAG-TTATGTTTCA-TATTATTATA
1 TTT-TTATTTATTATTTTACTATTAAATTAATTAATTTGAGCTTAT-TCTCATTATTATTATA
86201465 TTATTTATTTATTATT
1 TT-TTTATTTATTATT
86201481 ATATATTTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
60 26 0.39
61 5 0.08
62 20 0.30
63 13 0.20
64 2 0.03
ACGTcount: A:0.26, C:0.04, G:0.05, T:0.65
Consensus pattern (61 bp):
TTTTTATTTATTATTTTACTATTAAATTAATTAATTTGAGCTTATTCTCATTATTATTATA
Found at i:86201479 original size:19 final size:18
Alignment explanation
Indices: 86201455--86201491 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
86201445 TTATGTTTCA
86201455 TATTATTATATTATTTATT
1 TATTATTATA-TATTTATT
86201474 TATTATTATATATTTATT
1 TATTATTATATATTTATT
86201492 ATGTAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTATTATATATTTATT
Found at i:86201480 original size:63 final size:61
Alignment explanation
Indices: 86201344--86201482 Score: 151
Period size: 62 Copynumber: 2.2 Consensus size: 61
86201334 TAACCCCTTT
*
86201344 TTTATTTTT-TTATTTTACTGTTAAATTAATTAATTTGAGCTTTATTCTCATTATTTTTATA
1 TTTATTTTTATTATTTTACTATTAAATTAATTAATTTGAGC-TTATTCTCATTATTTTTATA
* * *
86201405 TTTGTTTTTTATTATTTT-CTATTAATTTAATTAATTTGAG-TTATGTTTCA-TATTATTATATT
1 TTT-ATTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTAT-TCTCATTATT-TT-TA-T
86201467 A
61 A
86201468 TTTATTTATTATTAT
1 TTTATTT-TTATTAT
86201483 ATATTTATTA
Statistics
Matches: 66, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
60 8 0.12
61 9 0.14
62 30 0.45
63 19 0.29
ACGTcount: A:0.27, C:0.04, G:0.05, T:0.64
Consensus pattern (61 bp):
TTTATTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTATTCTCATTATTTTTATA
Found at i:86201503 original size:17 final size:14
Alignment explanation
Indices: 86201463--86201493 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
86201453 CATATTATTA
*
86201463 TATTATTTATTTAT
1 TATTATATATTTAT
86201477 TATTATATATTTAT
1 TATTATATATTTAT
86201491 TAT
1 TAT
86201494 GTAAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTATATATTTAT
Found at i:86201817 original size:13 final size:12
Alignment explanation
Indices: 86201796--86201836 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
86201786 ATTACTGTTG
86201796 TTTTATTAATTA
1 TTTTATTAATTA
86201808 TTTCTATTAATTA
1 TTT-TATTAATTA
*
86201821 TTATTATTTATTA
1 TT-TTATTAATTA
86201834 TTT
1 TTT
86201837 ATATATGGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
12 4 0.15
13 21 0.81
14 1 0.04
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTTATTAATTA
Found at i:86205593 original size:21 final size:21
Alignment explanation
Indices: 86205569--86205612 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
86205559 AGGGATCAAT
*
86205569 TGCTGGAGTCCCAGAAAAACA
1 TGCTGGAGTCACAGAAAAACA
*
86205590 TGCTGGAGTCACAGAACAACA
1 TGCTGGAGTCACAGAAAAACA
86205611 TG
1 TG
86205613 ATGAGCCAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.16
Consensus pattern (21 bp):
TGCTGGAGTCACAGAAAAACA
Found at i:86210256 original size:27 final size:27
Alignment explanation
Indices: 86210218--86210365 Score: 154
Period size: 27 Copynumber: 5.4 Consensus size: 27
86210208 CGATCGACGG
* *
86210218 ACTAAGTGTGCGAAATGAATATG-ATGC
1 ACTAAGTGTGCGAATTGACTATGTA-GC
* **
86210245 ACTAAGTGTGCGAATTGACCATGCGGC
1 ACTAAGTGTGCGAATTGACTATGTAGC
*
86210272 ACTAAGTGTGCGAGTCTGACTATGTAGC
1 ACTAAGTGTGCGAAT-TGACTATGTAGC
* * *
86210300 ACTAAGTGTGCGATTTGATTACGTAGC
1 ACTAAGTGTGCGAATTGACTATGTAGC
* * *
86210327 ACTAAGTGTGCGAGTTGATTATATAGC
1 ACTAAGTGTGCGAATTGACTATGTAGC
*
86210354 ACTGAGTGTGCG
1 ACTAAGTGTGCG
86210366 GGCTCAATAT
Statistics
Matches: 104, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
27 81 0.78
28 23 0.22
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (27 bp):
ACTAAGTGTGCGAATTGACTATGTAGC
Found at i:86210310 original size:55 final size:54
Alignment explanation
Indices: 86210218--86210365 Score: 163
Period size: 55 Copynumber: 2.7 Consensus size: 54
86210208 CGATCGACGG
** * *
86210218 ACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGTGCGAATTGACCATGCGGC
1 ACTAAGTGTGCGAGTTGAATATGTA-GCACTAAGTGTGCGAATTGACCACGCAGC
* * ** *
86210272 ACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGC
1 ACTAAGTGTGCGAGT-TGAATATGTAGCACTAAGTGTGCGAATTGACCACGCAGC
* * *
86210327 ACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 ACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
86210366 GGCTCAATAT
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
54 34 0.43
55 45 0.56
56 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (54 bp):
ACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAATTGACCACGCAGC
Found at i:86210376 original size:27 final size:27
Alignment explanation
Indices: 86210270--86210376 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
86210260 TGACCATGCG
* * *
86210270 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
86210298 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
86210325 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
86210352 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
86210377 CATTCGTGAA
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
27 52 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:86218237 original size:27 final size:27
Alignment explanation
Indices: 86218203--86218353 Score: 169
Period size: 27 Copynumber: 5.6 Consensus size: 27
86218193 TAAATTGTAC
* *
86218203 AGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
86218229 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
86218257 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
86218285 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
86218312 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
86218339 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86218354 GACTCAATAT
Statistics
Matches: 110, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
26 1 0.01
27 86 0.78
28 23 0.21
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:86218300 original size:55 final size:54
Alignment explanation
Indices: 86218202--86218353 Score: 180
Period size: 55 Copynumber: 2.8 Consensus size: 54
86218192 TTAAATTGTA
**
86218202 CAGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGTGCGAATTGACCATG
1 CAGCACTAAGTGTGCGAGTTGAATATGTA-GCACTAAGTGTGCGAATTGACCATG
* * * **
86218256 CGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG
1 CAGCACTAAGTGTGCGAG-TTGAATATGTAGCACTAAGTGTGCGAATTGACCATG
* * * *
86218311 TAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
86218354 GACTCAATAT
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
54 38 0.45
55 45 0.54
56 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (54 bp):
CAGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAATTGACCATG
Found at i:86218344 original size:82 final size:82
Alignment explanation
Indices: 86218203--86218353 Score: 196
Period size: 82 Copynumber: 1.8 Consensus size: 82
86218193 TAAATTGTAC
* *
86218203 AGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTG
1 AGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATACAGCACTAAGTG
86218268 TGCGAGTTTGACTATGT
66 TGCGAGTTTGACTATGT
** * * ** * *
86218285 AGCACTAAGTGTGCGATTTGATTATG-TAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATACAGCACTAAGT
86218349 GTGCG
65 GTGCG
86218354 GACTCAATAT
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
81 1 0.02
82 57 0.98
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATACAGCACTAAGTG
TGCGAGTTTGACTATGT
Found at i:86222836 original size:46 final size:44
Alignment explanation
Indices: 86222663--86222875 Score: 146
Period size: 46 Copynumber: 4.6 Consensus size: 44
86222653 TGAGCTAGTA
* * *
86222663 TAAGACATGTCTGGGACATGCATCGGCCA-CATTATGA-GAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGG-CATC--GA-GACGTGCCAGTC
* * ** * * *
86222709 TAAGACCATGTCCGGGATATGGCATCAACATTGAGACGAGTGCTAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGAC--GTGCCAGTC
*
86222757 TAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCCAGTC
1 TAAGACATGTCTGGGACATGCATCGGCATCGAGACGT--GCCAGTC
* *
86222803 TAAGACATGTCTGGGACATGCATCGG-ATACGAGATGTGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGGCAT-CGAGACGTGCCAGTC
* *
86222847 TAGGACCATGTCT-GGACATGGCATTGGCA
1 TAAGA-CATGTCTGGGACAT-GCATCGGCA
86222876 CAGATATGTG
Statistics
Matches: 134, Mismatches: 21, Indels: 24
0.75 0.12 0.13
Matches are distributed among these distances:
44 18 0.13
45 16 0.12
46 57 0.43
47 26 0.19
48 17 0.13
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (44 bp):
TAAGACATGTCTGGGACATGCATCGGCATCGAGACGTGCCAGTC
Found at i:86224903 original size:23 final size:23
Alignment explanation
Indices: 86224856--86224905 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
86224846 CTTTTATTTT
*
86224856 TTATATCTTAAACATTTAAAAAA
1 TTATATCTTAAACATTAAAAAAA
86224879 TTATAT-TTAAAC-TTAAAATATAA
1 TTATATCTTAAACATTAAAA-A-AA
86224902 TTAT
1 TTAT
86224906 TAACTTAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 5 0.21
22 7 0.29
23 12 0.50
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (23 bp):
TTATATCTTAAACATTAAAAAAA
Found at i:86227444 original size:49 final size:49
Alignment explanation
Indices: 86227382--86227811 Score: 675
Period size: 47 Copynumber: 8.9 Consensus size: 49
86227372 TAGTATGGCG
*
86227382 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
86227431 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
86227480 TAATGACAGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
86227527 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGATAAGGCC
86227578 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
86227625 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
86227674 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
86227721 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA-CAGGGC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* * * *
86227767 TGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 T-AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
86227812 TCCCGAAGGG
Statistics
Matches: 359, Mismatches: 12, Indels: 21
0.92 0.03 0.05
Matches are distributed among these distances:
46 5 0.01
47 180 0.50
48 3 0.01
49 124 0.35
51 47 0.13
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
Found at i:86227556 original size:96 final size:96
Alignment explanation
Indices: 86227390--86227811 Score: 681
Period size: 96 Copynumber: 4.4 Consensus size: 96
86227380 CGTAATAGCC
86227390 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
86227455 AAGTGTATATATATGTGATAAGGCCTAATGACA
64 AAGTGTATATATATGTGATAAGGCCTAATGGCA
86227488 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
86227553 GTGTATATATATATGTGATAAGGCCTAATGGCC
66 GTG--TATATATATGTGATAAGGCCTAATGGCA
86227586 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
86227651 GTGTATATATATGTGATAAGGCCTAATGGCC
66 GTGTATATATATGTGATAAGGCCTAATGGCA
86227682 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* * *
86227747 GTG--TATATATGTGA-CAGGGCTGAGTGGCCA
66 GTGTATATATATGTGATAAGGCCT-AATGG-CA
* * *
86227777 -ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAG
86227812 TCCCGAAGGG
Statistics
Matches: 311, Mismatches: 9, Indels: 12
0.94 0.03 0.04
Matches are distributed among these distances:
93 5 0.02
94 47 0.15
95 1 0.00
96 143 0.46
98 115 0.37
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
GTGTATATATATGTGATAAGGCCTAATGGCA
Found at i:86265126 original size:43 final size:42
Alignment explanation
Indices: 86265032--86265146 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 42
86265022 TTCTGTTTTG
* * * * * *
86265032 CATGTAAGACCATGTCTGTGACATTGACATCGTGTCTGATTT
1 CATGTAAGACCCTGTCTGGGACAGTGGCATCATGTCTGATTA
* *
86265074 CGTGTAAGACCCTGTCTGGGACAGTGGCATCAATGTTTGATTA
1 CATGTAAGACCCTGTCTGGGACAGTGGCATC-ATGTCTGATTA
86265117 CATGTAAGACCAC-GTCTGGGAC-GTTGGCAT
1 CATGTAAGACC-CTGTCTGGGACAG-TGGCAT
86265147 TGTATACGCT
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
42 27 0.44
43 33 0.54
44 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.30
Consensus pattern (42 bp):
CATGTAAGACCCTGTCTGGGACAGTGGCATCATGTCTGATTA
Found at i:86267466 original size:19 final size:19
Alignment explanation
Indices: 86267417--86267466 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
86267407 CGGGTAAGGG
*
86267417 ACACGGGCGTGCCCCATGC
1 ACACGGGCGTGTCCCATGC
86267436 ACACGGGCGTGTCCCATGC
1 ACACGGGCGTGTCCCATGC
86267455 ACACGGGCGTGT
1 ACACGGGCGTGT
86267467 GAGGCTTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.16, C:0.36, G:0.34, T:0.14
Consensus pattern (19 bp):
ACACGGGCGTGTCCCATGC
Found at i:86269278 original size:20 final size:20
Alignment explanation
Indices: 86269233--86269281 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
86269223 AAAGTCCCCG
*
86269233 TGGTATCGATATTTTTCCTAC
1 TGGTATCGATATTTTT-CTAA
*
86269254 GGGTATCGATATTTTT-TAAA
1 TGGTATCGATATTTTTCT-AA
86269274 TGGTATCG
1 TGGTATCG
86269282 TTACCAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 1 0.04
20 8 0.33
21 15 0.62
ACGTcount: A:0.22, C:0.12, G:0.20, T:0.45
Consensus pattern (20 bp):
TGGTATCGATATTTTTCTAA
Found at i:86271133 original size:94 final size:93
Alignment explanation
Indices: 86270986--86271247 Score: 287
Period size: 94 Copynumber: 2.8 Consensus size: 93
86270976 GTTATGTGAG
* * * * * **
86270986 AGCCAGTATAAGACCATGTTAGGGACATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGATGTG
1 AGCCAGTGTAAGACCA-GTTTGGGACATGGCATCGGC-TAGAGATGAGTGCTAGTGTAAGACATG
86271051 TCTGGGACATGCATCAGCCGC-ATCATGAT
64 TCTGGGACATGCATCAGCCGCGATCATGAT
* * *
86271080 AGCCCGTGTAAGACCACGTTTGAGACATGGCATCGGCGTAGAGGTGAGTGCTAGTGTAAGACATG
1 AGCCAGTGTAAGACCA-GTTTGGGACATGGCATCGGC-TAGAGATGAGTGCTAGTGTAAGACATG
* * * *
86271145 TCTGGGACATGCATCGGCCTCGATGATGTT
64 TCTGGGACATGCATCAGCCGCGATCATGAT
* * * **
86271175 AGCCAGTGTAAGACGAGTCTGGGACAT-GCATCGGCTA-AGTTTCGTGCTAGTGTAAGACCATGT
1 AGCCAGTGTAAGACCAGTTTGGGACATGGCATCGGCTAGAGATGAGTGCTAGTGTAAGA-CATGT
86271238 CTGGGACATG
65 CTGGGACATG
86271248 GCAGCGGCAA
Statistics
Matches: 143, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
91 17 0.12
92 17 0.12
93 8 0.06
94 81 0.57
95 20 0.14
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (93 bp):
AGCCAGTGTAAGACCAGTTTGGGACATGGCATCGGCTAGAGATGAGTGCTAGTGTAAGACATGTC
TGGGACATGCATCAGCCGCGATCATGAT
Found at i:86271183 original size:47 final size:46
Alignment explanation
Indices: 86271038--86271209 Score: 145
Period size: 47 Copynumber: 3.7 Consensus size: 46
86271028 GACGAGGGCT
** * * *
86271038 AGTGTAAGATGTGTCTGGGACATGCATCAGCCGC-ATCATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATG-TAGCC
* * * * * * *
86271084 CGTGTAAGACCACGTTTGAGACATGGCATCGGCGTAGAGGTGA-GT-GCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGA--TGATGTAGCC
86271132 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATG-TAGCC
86271179 AGTGTAAGACGA-GTCTGGGACATGCATCGGC
1 AGTGTAAGAC-ATGTCTGGGACATGCATCGGC
86271210 TAAGTTTCGT
Statistics
Matches: 98, Mismatches: 19, Indels: 17
0.73 0.14 0.13
Matches are distributed among these distances:
44 3 0.03
45 1 0.01
46 20 0.20
47 51 0.52
48 18 0.18
49 2 0.02
50 1 0.01
51 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTAGCC
Found at i:86272139 original size:55 final size:55
Alignment explanation
Indices: 86272025--86272140 Score: 135
Period size: 55 Copynumber: 2.1 Consensus size: 55
86272015 CAGTATTATC
* * * * *
86272025 CACGGTTAGGCCACACGGGCGTGTGCCATAGCCGTGTCTATAAGTCAGTATCGCC
1 CACGGGTAGGCCACACGGGCATGTGCCATAGCCGTGCCTATAAGTCAGTATCACA
* * * *
86272080 CACGGGTAGGCCACACGGGCATGTGTCATGGCCGTGCCCTA-AGGTCAGTGTCACA
1 CACGGGTAGGCCACACGGGCATGTGCCATAGCCGTG-CCTATAAGTCAGTATCACA
86272135 CACGGG
1 CACGGG
86272141 CTGAGGACAT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
55 48 0.94
56 3 0.06
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (55 bp):
CACGGGTAGGCCACACGGGCATGTGCCATAGCCGTGCCTATAAGTCAGTATCACA
Found at i:86278814 original size:47 final size:45
Alignment explanation
Indices: 86278657--86278971 Score: 180
Period size: 47 Copynumber: 6.7 Consensus size: 45
86278647 GGGATATATT
*
86278657 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC--TCTCATATACGCG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCTC-TGTA---G
* * * * * *
86278706 TGCTGAAT-CATGTTCCAGACATGTCTTATACTAGCACAACTCT-TA-
1 -GCCG-ATGCATGTCCCAGACATGTCTTACACTGGC-TATCTCTGTAG
* * * *
86278751 GTCGATACGTGTCCCAGACACGTCTTACACTGGCTATCTCTGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGT--AG
86278798 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTGTA-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGG--CT-ATCTCTGTAG
* *
86278845 -CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTATCAT-AGTATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-TCTGTA-G
** * * * *
86278892 GCTTATGCATGTCCCAGACATGTCTTACACTAGCCCT-TGTCTGGAT
1 GCCGATGCATGTCCCAGACATGTCTTACACT-G-GCTATCTCTGTAG
* * *
86278938 GTCGATGCCATTTCCCAAACATGTCTTACACTGG
1 GCCGATG-CATGTCCCAGACATGTCTTACACTGG
86278972 TGCACAAATC
Statistics
Matches: 209, Mismatches: 34, Indels: 49
0.72 0.12 0.17
Matches are distributed among these distances:
43 7 0.03
44 25 0.12
45 6 0.03
46 26 0.12
47 81 0.39
48 30 0.14
49 17 0.08
50 12 0.06
51 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGTAG
Found at i:86278905 original size:94 final size:92
Alignment explanation
Indices: 86278658--86278971 Score: 268
Period size: 94 Copynumber: 3.4 Consensus size: 92
86278648 GGATATATTG
* * *
86278658 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TACGCGTGCTGAAT-CATGTTC
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTATCATAGTA---G-GCT-AATGCATGTCC
* *
86278721 CAGACATGTCTTATACTAGCA-CAACTCT-TA
61 CAGACATGTCTTACACTAGCACCATCTCTGTA
* * * * * * **
86278751 GTCGAT-ACGTGTCCCAGACA-CGTCTTACACTGGCTATC-TCTGTCGAGGCCGATGCATGTCCC
1 -CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTATCAT-AGT--AGGCTAATGCATGTCCC
*
86278813 AGACATGTCTTACACTGGCACTCATCTCTGTA
62 AGACATGTCTTACACTAGCAC-CATCTCTGTA
*
86278845 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTATCATAGTATGGCTTATGCATGTCCCAGA
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTATCATAGTA-GGCTAATGCATGTCCCAGA
* * *
86278910 CATGTCTTACACTAGC-CCTTGTCTGGATG
65 CATGTCTTACACTAGCACCATCTCT-G-TA
* *
86278939 TCGATGCCATTTCCCAAACAT-GTCTTACACTGG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGG
86278972 TGCACAAATC
Statistics
Matches: 180, Mismatches: 26, Indels: 29
0.77 0.11 0.12
Matches are distributed among these distances:
90 2 0.01
91 28 0.16
92 22 0.12
93 38 0.21
94 69 0.38
95 20 0.11
96 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (92 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTATCATAGTAGGCTAATGCATGTCCCAGAC
ATGTCTTACACTAGCACCATCTCTGTA
Found at i:86280535 original size:46 final size:46
Alignment explanation
Indices: 86280483--86280703 Score: 293
Period size: 46 Copynumber: 4.8 Consensus size: 46
86280473 GTTTGGGCAT
* * *
86280483 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *** * * * *
86280529 CTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-AC-TAGGC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAACGC
86280574 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
86280622 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
86280668 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86280704 GCGGGTTACA
Statistics
Matches: 152, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
45 2 0.01
46 115 0.76
47 32 0.21
48 3 0.02
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:86280637 original size:93 final size:94
Alignment explanation
Indices: 86280478--86280703 Score: 307
Period size: 93 Copynumber: 2.4 Consensus size: 94
86280468 AGGATGTTTG
* * * *
86280478 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
* * *
86280543 TTGAGTCCGAGTTCGAGAGATGTA-AC-TA
66 TTGAGTCCGAGTTC-ACAGATGGATACGAA
*
86280571 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
** *
86280636 TTGAGTCCGAGTTCACTTATGGATGCGAA
66 TTGAGTCCGAGTTCACAGATGGATACGAA
*
86280665 CGC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86280704 GCGGGTTACA
Statistics
Matches: 119, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
92 41 0.34
93 75 0.63
94 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (94 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCACAGATGGATACGAA
Found at i:86283816 original size:40 final size:40
Alignment explanation
Indices: 86283786--86284009 Score: 278
Period size: 40 Copynumber: 5.6 Consensus size: 40
86283776 GCTACTCGTT
* *
86283786 CAAATGCCTTCGGGACATAGCCCGGTTATAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
86283826 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
86283866 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
86283906 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * * *
86283945 CAAATGCCTTC-GGATCTTAGTCTGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
86283986 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
86284010 ACATCACTCA
Statistics
Matches: 161, Mismatches: 15, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 114 0.71
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:86283964 original size:119 final size:120
Alignment explanation
Indices: 86283788--86284010 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
86283778 TACTCGTTCA
* * *
86283788 AATGCCTTCGGGACATAGCCCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
86283853 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * *
86283908 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCTGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
* * *
86283970 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
86284011 CATCACTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:86297647 original size:28 final size:28
Alignment explanation
Indices: 86297582--86297732 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
86297572 GAGATTGGCG
* * * *
86297582 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
86297611 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
86297639 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
86297667 CTAAGTGTACGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
86297695 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
86297722 CTGAGTGTGCG
1 CTAAGTGTGCG
86297733 GACTTAATAT
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.21
28 74 0.65
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:86301003 original size:35 final size:35
Alignment explanation
Indices: 86300949--86301018 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
86300939 AAAGCAAATT
* * *
86300949 ATGCAAGCCTTGGTTCTTTTTCTGAAAATCATTTA
1 ATGCAAGCCTTAGTGCTTTTTCTCAAAATCATTTA
86300984 ATGCAAGCCTTAGTGCTTTTTCTCAAAATCATTTA
1 ATGCAAGCCTTAGTGCTTTTTCTCAAAATCATTTA
86301019 TGGTTGCTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.41
Consensus pattern (35 bp):
ATGCAAGCCTTAGTGCTTTTTCTCAAAATCATTTA
Found at i:86303417 original size:27 final size:26
Alignment explanation
Indices: 86303379--86303814 Score: 505
Period size: 27 Copynumber: 16.2 Consensus size: 26
86303369 GGCCTAGATG
86303379 ATGACCGAAATATCCCCATAGGGTAAA
1 ATGACCGAAATA-CCCCATAGGGTAAA
86303406 ATGACCGAAATAACCCCATAGGGTAAA
1 ATGACCGAAAT-ACCCCATAGGGTAAA
*
86303433 ATGATCGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATA-CCCCATAGGGTAAA
* *
86303460 ATGACCGAAATGCCCTCATAGGATAAA
1 ATGACCGAAATACCC-CATAGGGTAAA
*
86303487 ATGATCGAAATATCCCCATAGGGTAAA
1 ATGACCGAAATA-CCCCATAGGGTAAA
*
86303514 ATGACCGAAATACCCCCATAGGATAAA
1 ATGACCGAAATA-CCCCATAGGGTAAA
*
86303541 ATGATCGAAATATCCCCATAGGGTAAA
1 ATGACCGAAATA-CCCCATAGGGTAAA
* *
86303568 ATGACTGAAATACTCTCATAGGGTAAA
1 ATGACCGAAATAC-CCCATAGGGTAAA
86303595 ATGACCGAAATACCTCCATAGGGTAAA
1 ATGACCGAAATACC-CCATAGGGTAAA
*
86303622 ATGACCGAAATACCCCTATAAGGTAAA
1 ATGACCGAAATACCCC-ATAGGGTAAA
* * *
86303649 ATGACTGTAATA-CCCATGTTGGGTAAA
1 ATGACCGAAATACCCCA--TAGGGTAAA
*
86303676 ATGACCGAAAAACCCCATAGGGTAAA
1 ATGACCGAAATACCCCATAGGGTAAA
* * *
86303702 ATGACCAAAACACTCCCATAAGGTAAA
1 ATGACCGAAATAC-CCCATAGGGTAAA
* *
86303729 ATAACCGAAATACCCCTATAAGGTAAA
1 ATGACCGAAATACCCC-ATAGGGTAAA
*
86303756 ATGACTGAAATACCCCTATAGGGTAAA
1 ATGACCGAAATACCCC-ATAGGGTAAA
** * **
86303783 ATGAGTGTAATACCCTTGTAGGGTAAA
1 ATGACCGAAATACCC-CATAGGGTAAA
86303810 ATGAC
1 ATGAC
86303815 TATAATACCC
Statistics
Matches: 355, Mismatches: 41, Indels: 26
0.84 0.10 0.06
Matches are distributed among these distances:
25 1 0.00
26 33 0.09
27 313 0.88
28 8 0.02
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.20
Consensus pattern (26 bp):
ATGACCGAAATACCCCATAGGGTAAA
Found at i:86310547 original size:50 final size:50
Alignment explanation
Indices: 86310385--86310751 Score: 305
Period size: 50 Copynumber: 7.6 Consensus size: 50
86310375 TGACCTATGT
** *
86310385 GCTAGTGTAAGA-CATGTCTTTGACAT-GCATCGGCCAC-AG-TATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGA
* * * * * * * *
86310431 GCCAATGTAAGGCCATGTCTGGGACATAGCATCGACATTGAG--ACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGA
**
86310479 GCTAACGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGA
** * ** *
86310529 GCTAGTGTAAGACCATGTCTGGGACATAACATC-GACT--TTATATGTG-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGA
* * *
86310575 TC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGACAGATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAGATATGAGA
* *
86310624 GCTAGTGTAAGACCATGTCTGGGAAATGGCATCGGCCTCGATATATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGA
* * * ** * *
86310674 -TTCAGTGTAAGACCATGTCTAGAACATGGCATCGG-CT-TTGATGTGTGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGA
** *
86310722 GCCGGTGTAAGACCATGTCCGGGACATGGC
1 GCTAGTGTAAGACCATGTCTGGGACATGGC
86310752 GTCGACATCT
Statistics
Matches: 254, Mismatches: 53, Indels: 26
0.76 0.16 0.08
Matches are distributed among these distances:
45 28 0.11
46 11 0.04
47 19 0.07
48 81 0.32
49 10 0.04
50 105 0.41
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (50 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGA
Found at i:86310625 original size:95 final size:96
Alignment explanation
Indices: 86310386--86310709 Score: 338
Period size: 95 Copynumber: 3.4 Consensus size: 96
86310376 GACCTATGTG
** * * *
86310386 CTAGTGTAAGA-CATGTCTTTGACAT-GCATCGG-CC-ACAGTATGAGAGCCAATGTAAGGCCAT
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCCGACAG-ATGAGAGCTAGTGTAAGACCAT
* * * *
86310447 GTCTGGGACATAGCATCGACATTGAGACGAGAG
65 GTCTGGGACATAGCATCGAC-TTTATATGAGAT
** * *
86310480 CTAACGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGAGCTAGTGTAAGACCAT
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-CGACAGATGAGAGCTAGTGTAAGACCAT
* *
86310545 GTCTGGGACATAACATCGACTTTATATGTG-T
65 GTCTGGGACATAGCATCGACTTTATATGAGAT
86310576 C-AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGACAGATGAGAGCTAGTGTAAGACCAT
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CCGACAGATGAGAGCTAGTGTAAGACCAT
* * * *
86310640 GTCTGGGAAATGGCATCGGCCTCGATATATGAGAT
65 GTCTGGGACATAGCATC-GACT--TTATATGAGAT
* *
86310675 -TCAGTGTAAGACCATGTCTAGAACATGGCATCGGC
1 CT-AGTGTAAGACCATGTCTGGGACATGGCATCGGC
86310710 TTTGATGTGT
Statistics
Matches: 191, Mismatches: 27, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
94 9 0.05
95 83 0.43
96 12 0.06
97 7 0.04
98 46 0.24
99 3 0.02
100 31 0.16
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (96 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCCGACAGATGAGAGCTAGTGTAAGACCATG
TCTGGGACATAGCATCGACTTTATATGAGAT
Found at i:86310647 original size:145 final size:145
Alignment explanation
Indices: 86310430--86310758 Score: 403
Period size: 145 Copynumber: 2.3 Consensus size: 145
86310420 ACAGTATGAG
* * * **
86310430 AGCCAATGTAAGGCCATGTCTGGGACATAGCATCGACATTGAGACGAGAGCTAACGTAAGACCAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACCGAGACGAGAGCTAACGTAAGACCAT
* * *
86310495 GTCTGGGACATGGCATCGGCCTCGAGATATGAGAGCT-AGTGTAAGACCATGTCTGGGACATAAC
66 GTCTGGGAAATGGCATCGGCCTCGAGATATGAGA-CTCAGTGTAAGACCATGTCTAGAACATAAC
86310559 ATCGACTTT-ATATGT
130 ATCGACTTTGATATGT
* * * **
86310574 -GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGACAGATGAGAGCTAGTGTAAGACC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACCG--AGACGAGAGCTAACGTAAGACC
* * **
86310638 ATGTCTGGGAAATGGCATCGGCCTCGATATATGAGATTCAGTGTAAGACCATGTCTAGAACATGG
64 ATGTCTGGGAAATGGCATCGGCCTCGAGATATGAGACTCAGTGTAAGACCATGTCTAGAACATAA
* *
86310703 CATCGGCTTTGATGTGT
129 CATCGACTTTGATATGT
* * *
86310720 GAGCCGGTGTAAGACCATGTCCGGGACATGGCGTCGACA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACA
86310759 TCTTACCCTA
Statistics
Matches: 155, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
143 33 0.21
144 1 0.01
145 84 0.54
146 5 0.03
148 32 0.21
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (145 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACCGAGACGAGAGCTAACGTAAGACCAT
GTCTGGGAAATGGCATCGGCCTCGAGATATGAGACTCAGTGTAAGACCATGTCTAGAACATAACA
TCGACTTTGATATGT
Found at i:86314461 original size:50 final size:50
Alignment explanation
Indices: 86314407--86314503 Score: 194
Period size: 50 Copynumber: 1.9 Consensus size: 50
86314397 TTGAGTTATT
86314407 AGTATATGGCCAACAGGTGTGTCTCATATTGATTATGGTTTGTGGACTAA
1 AGTATATGGCCAACAGGTGTGTCTCATATTGATTATGGTTTGTGGACTAA
86314457 AGTATATGGCCAACAGGTGTGTCTCATATTGATTATGGTTTGTGGAC
1 AGTATATGGCCAACAGGTGTGTCTCATATTGATTATGGTTTGTGGAC
86314504 CTATCTATCT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.25, C:0.12, G:0.27, T:0.36
Consensus pattern (50 bp):
AGTATATGGCCAACAGGTGTGTCTCATATTGATTATGGTTTGTGGACTAA
Found at i:86319969 original size:35 final size:35
Alignment explanation
Indices: 86319923--86319992 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
86319913 TATGACCATA
86319923 AAACCAAATTTACCTTTCAACTTCTTAAAAGAATG
1 AAACCAAATTTACCTTTCAACTTCTTAAAAGAATG
86319958 AAACCAAATTTACCTTTCAACTTCTTAAAAGAATG
1 AAACCAAATTTACCTTTCAACTTCTTAAAAGAATG
86319993 GACGATTTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.43, C:0.20, G:0.06, T:0.31
Consensus pattern (35 bp):
AAACCAAATTTACCTTTCAACTTCTTAAAAGAATG
Found at i:86326268 original size:32 final size:32
Alignment explanation
Indices: 86326227--86326290 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
86326217 GAGTGGGTTA
86326227 CCCTTGACACTGTCGAAGAAGGACTCGATTTG
1 CCCTTGACACTGTCGAAGAAGGACTCGATTTG
86326259 CCCTTGACACTGTCGAAGAAGGACTCGATTTG
1 CCCTTGACACTGTCGAAGAAGGACTCGATTTG
86326291 GGTAATTGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (32 bp):
CCCTTGACACTGTCGAAGAAGGACTCGATTTG
Found at i:86328129 original size:27 final size:27
Alignment explanation
Indices: 86328096--86328241 Score: 150
Period size: 27 Copynumber: 5.4 Consensus size: 27
86328086 TGGATAAGTT
86328096 GTAGAATTACCGAAATACCCCTATAAG
1 GTAGAATTACCGAAATACCCCTATAAG
**
86328123 GTAGAATTATTGAAATACCCCTAT-AG
1 GTAGAATTACCGAAATACCCCTATAAG
* * * *
86328149 GATAGAATTATCGAAATGCCCTTGTAAG
1 G-TAGAATTACCGAAATACCCCTATAAG
* * *
86328177 GTAGAAATACCGAAATACCCCTTTAGG
1 GTAGAATTACCGAAATACCCCTATAAG
* * * *
86328204 GTAGAATTACCGAGATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTATAAG
*
86328231 GTAAAATTACC
1 GTAGAATTACC
86328242 ATTTTGCCCC
Statistics
Matches: 100, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 3 0.03
27 94 0.94
28 3 0.03
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTATAAG
Found at i:86328179 original size:54 final size:54
Alignment explanation
Indices: 86328097--86328241 Score: 182
Period size: 54 Copynumber: 2.7 Consensus size: 54
86328087 GGATAAGTTG
* * **
86328097 TAGAATTACCGAAATACCCCTATAAGGTAGAATTATTGAAATACCCCTATAGGA
1 TAGAATTACCGAAATACCCTTGTAAGGTAGAATTACCGAAATACCCCTATAGGA
* * * * *
86328151 TAGAATTATCGAAATGCCCTTGTAAGGTAGAAATACCGAAATACCCCTTTAGGG
1 TAGAATTACCGAAATACCCTTGTAAGGTAGAATTACCGAAATACCCCTATAGGA
* * *
86328205 TAGAATTACCGAGATACCCTTGTAGGGTAAAATTACC
1 TAGAATTACCGAAATACCCTTGTAAGGTAGAATTACC
86328242 ATTTTGCCCC
Statistics
Matches: 76, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 76 1.00
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (54 bp):
TAGAATTACCGAAATACCCTTGTAAGGTAGAATTACCGAAATACCCCTATAGGA
Found at i:86328996 original size:31 final size:32
Alignment explanation
Indices: 86328958--86329019 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
86328948 CTTGCTGCAA
* *
86328958 TCTGGTGGCTTCGCCAC-ATATATATATCTGT
1 TCTGGTGGCCTAGCCACAATATATATATCTGT
*
86328989 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
86329020 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.35
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:86342519 original size:39 final size:39
Alignment explanation
Indices: 86342476--86342692 Score: 152
Period size: 39 Copynumber: 5.6 Consensus size: 39
86342466 GCTCCTCGTT
*
86342476 CAAATGCCTTCGGGACATAGCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCGGTTATAGTAATTCGCA
* *
86342515 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTT-AGCCGG-TTATAGTAATTCGCA
*
86342555 CAAATG-CTTCGGG-CTTAGCCGG-AATTAGT-ATCTCGCAA
1 CAAATGCCTTCGGGACTTAGCCGGTTA-TAGTAAT-TCGC-A
* * **
86342593 AAAATGCCTTCGGG-CTTAGCCCGAAATTAGT-ATCTCG-A
1 CAAATGCCTTCGGGACTTAGCCGGTTA-TAGTAAT-TCGCA
* * * *
86342631 CAAATGCCTTC-GGATCTTAGTCC-GATATTGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCGGTTATAGT-AATTCGCA
86342671 C-AA-GCCTTCGGGACTTAGCCGG
1 CAAATGCCTTCGGGACTTAGCCGG
86342693 ACAACATTCA
Statistics
Matches: 149, Mismatches: 13, Indels: 33
0.76 0.07 0.17
Matches are distributed among these distances:
36 1 0.01
37 17 0.11
38 35 0.23
39 54 0.36
40 40 0.27
41 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCGGTTATAGTAATTCGCA
Found at i:86342558 original size:40 final size:38
Alignment explanation
Indices: 86342476--86342643 Score: 171
Period size: 40 Copynumber: 4.3 Consensus size: 38
86342466 GCTCCTCGTT
* * * *
86342476 CAAATGCCTTCGGGACATAGCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGG-CTTACCCGGAAT-TAGTAACTCGCA
*
86342515 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTT-ACCCGGAATTAGTAACTCGCA
* *
86342555 CAAATG-CTTCGGGCTTAGCCGGAATTAGTATCTCGCAA
1 CAAATGCCTTCGGGCTTACCCGGAATTAGTAACTCGC-A
* * *
86342593 AAAATGCCTTCGGGCTTAGCCCGAAATTAGTATCTCG-A
1 CAAATGCCTTCGGGCTTA-CCCGGAATTAGTAACTCGCA
86342631 CAAATGCCTTCGG
1 CAAATGCCTTCGG
86342644 ATCTTAGTCC
Statistics
Matches: 114, Mismatches: 10, Indels: 11
0.84 0.07 0.08
Matches are distributed among these distances:
37 17 0.15
38 22 0.19
39 35 0.31
40 38 0.33
41 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (38 bp):
CAAATGCCTTCGGGCTTACCCGGAATTAGTAACTCGCA
Found at i:86342636 original size:38 final size:39
Alignment explanation
Indices: 86342476--86342643 Score: 186
Period size: 39 Copynumber: 4.3 Consensus size: 39
86342466 GCTCCTCGTT
* *
86342476 CAAATGCCTTCGGGACATAG-CCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
86342515 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
86342555 CAAATG-CTTCGGGCTTAG-CCGGAATTAGTATCTCGCAA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGC-A
* *
86342593 AAAATGCCTTCGGGCTTAGCCCGAAATTAGTATCTCG-A
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86342631 CAAATGCCTTCGG
1 CAAATGCCTTCGG
86342644 ATCTTAGTCC
Statistics
Matches: 114, Mismatches: 9, Indels: 13
0.84 0.07 0.10
Matches are distributed among these distances:
37 16 0.14
38 23 0.20
39 38 0.33
40 35 0.31
41 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:86347075 original size:37 final size:35
Alignment explanation
Indices: 86347010--86347109 Score: 121
Period size: 36 Copynumber: 2.8 Consensus size: 35
86347000 CAGCCCTCCC
* * *
86347010 ATTTAACAACTCGCGAATGCCTCGGACTTAACCCGG
1 ATTTAATAACTCGCCAATGCCTTGGACTTAA-CCGG
86347046 ATTTAATAACTCGCACAATGCCTTGGACTTAACCGG
1 ATTTAATAACTCGC-CAATGCCTTGGACTTAACCGG
* *
86347082 ATTT-ATATCTCGCCAAAGCCTTCGGACT
1 ATTTAATAACTCGCCAATGCCTT-GGACT
86347110 AGCCGTTTCC
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
34 8 0.14
35 13 0.23
36 21 0.37
37 15 0.26
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (35 bp):
ATTTAATAACTCGCCAATGCCTTGGACTTAACCGG
Found at i:86354737 original size:40 final size:39
Alignment explanation
Indices: 86354639--86354861 Score: 241
Period size: 40 Copynumber: 5.6 Consensus size: 39
86354629 TCCTCGTTCA
* * * * *
86354639 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
86354678 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
86354717 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
86354757 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * * * * *
86354797 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
86354838 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
86354862 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:86354861 original size:120 final size:119
Alignment explanation
Indices: 86354639--86354861 Score: 272
Period size: 120 Copynumber: 1.9 Consensus size: 119
86354629 TCCTCGTTCA
* * * *
86354639 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
86354704 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
86354758 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* *
86354822 TATATTC-ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
86354862 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
119 37 0.43
120 44 0.51
121 6 0.07
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:86360064 original size:145 final size:145
Alignment explanation
Indices: 86359866--86360139 Score: 494
Period size: 145 Copynumber: 1.9 Consensus size: 145
86359856 AACTCAAGGT
* *
86359866 ACTTACCTTTTCCGCTGTCCAAAATTGACTCAGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCAGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
86359931 CAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 CAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
86359996 ATTTCAAGTTCGCAC
131 ATTTCAAGTTCGCAC
* *
86360011 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCAGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
86360076 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATG
66 CAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATG
86360140 TACTTTAAAC
Statistics
Matches: 123, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
145 123 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (145 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCAGTAAAGTCGCACCCTTAATGTAAATAATTTATA
CAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ATTTCAAGTTCGCAC
Found at i:86360156 original size:29 final size:30
Alignment explanation
Indices: 86360117--86360195 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
86360107 CTTAATAATC
86360117 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
86360147 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
86360176 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
86360196 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:86376215 original size:19 final size:19
Alignment explanation
Indices: 86376178--86376215 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
86376168 ACCTATCAGA
*
86376178 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
86376197 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
86376216 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:86387516 original size:111 final size:111
Alignment explanation
Indices: 86387321--86387526 Score: 292
Period size: 111 Copynumber: 1.9 Consensus size: 111
86387311 CCTTTGTGAC
* * * **
86387321 GAACTACGAAAGAATAAGTCTTTGTGGCGAACTATGAAAGAATAAGATTTTGTGGAGAACTATGA
1 GAACTACGAAAGAATAAGTCCTTGTGGCGAACTATGAAACAAAAAGACCTTGTGGAGAACTATGA
86387386 AACAATAAGCCTTTATGGTGAACTATGAAATAATAAACTCCTGTGT
66 AACAATAAGCCTTTATGGTGAACTATGAAATAATAAACTCCTGTGT
*
86387432 GAACTACGAAAGATTAAG-CACTTGTGGCGAACTATGAAACAAAAAGACCTTGTGGCA-AACTAT
1 GAACTACGAAAGAATAAGTC-CTTGTGGCGAACTATGAAACAAAAAGACCTTGTGG-AGAACTAT
* *
86387495 GAAAGAATAAGACC-TTGTGGTGAACTATGAAA
64 GAAACAATAAG-CCTTTATGGTGAACTATGAAA
86387527 GACTAAGCCC
Statistics
Matches: 84, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
110 1 0.01
111 80 0.95
112 3 0.04
ACGTcount: A:0.41, C:0.13, G:0.21, T:0.25
Consensus pattern (111 bp):
GAACTACGAAAGAATAAGTCCTTGTGGCGAACTATGAAACAAAAAGACCTTGTGGAGAACTATGA
AACAATAAGCCTTTATGGTGAACTATGAAATAATAAACTCCTGTGT
Found at i:86387538 original size:28 final size:28
Alignment explanation
Indices: 86387300--86387566 Score: 223
Period size: 28 Copynumber: 9.6 Consensus size: 28
86387290 AACACGTTAG
* * ** *
86387300 GAAAGAACAAGCCTTTGTGACGAACTAC
1 GAAAGAATAAGCCCTTGTGGTGAACTAT
* * *
86387328 GAAAGAATAAGTCTTTGTGGCGAACTAT
1 GAAAGAATAAGCCCTTGTGGTGAACTAT
*** *
86387356 GAAAGAATAAGATTTTGTGGAGAACTAT
1 GAAAGAATAAGCCCTTGTGGTGAACTAT
* * *
86387384 GAAACAATAAGCCTTTATGGTGAACTAT
1 GAAAGAATAAGCCCTTGTGGTGAACTAT
* * *
86387412 GAAATAATAAACTCC-TGT-GTGAACTAC
1 GAAAGAATAAGC-CCTTGTGGTGAACTAT
* * *
86387439 GAAAGATTAAGCACTTGTGGCGAACTAT
1 GAAAGAATAAGCCCTTGTGGTGAACTAT
* * * **
86387467 GAAACAAAAAGACCTTGTGGCAAACTAT
1 GAAAGAATAAGCCCTTGTGGTGAACTAT
*
86387495 GAAAGAATAAGACCTTGTGGTGAACTAT
1 GAAAGAATAAGCCCTTGTGGTGAACTAT
* * *
86387523 GAAAGACTAAGCCCTTGTTGTTAACTAT
1 GAAAGAATAAGCCCTTGTGGTGAACTAT
* *
86387551 CAAAGATTAAGCCCTT
1 GAAAGAATAAGCCCTT
86387567 ATGGCGACTC
Statistics
Matches: 197, Mismatches: 39, Indels: 6
0.81 0.16 0.02
Matches are distributed among these distances:
26 1 0.01
27 20 0.10
28 175 0.89
29 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.25
Consensus pattern (28 bp):
GAAAGAATAAGCCCTTGTGGTGAACTAT
Found at i:86392117 original size:24 final size:24
Alignment explanation
Indices: 86392083--86392159 Score: 91
Period size: 24 Copynumber: 3.2 Consensus size: 24
86392073 AAAGGCTATC
*
86392083 AGGAGAAGATTTAGGAGCTGGTAA
1 AGGAGAAGATTTAGGAGCTGATAA
* * **
86392107 GGGAGAGGATTTAGGAAATGATAA
1 AGGAGAAGATTTAGGAGCTGATAA
* *
86392131 AGCAGAAGATTTAGGAGCTGATCA
1 AGGAGAAGATTTAGGAGCTGATAA
86392155 AGGAG
1 AGGAG
86392160 CAGGAGTTGG
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.39, C:0.05, G:0.36, T:0.19
Consensus pattern (24 bp):
AGGAGAAGATTTAGGAGCTGATAA
Found at i:86400079 original size:24 final size:24
Alignment explanation
Indices: 86399981--86400077 Score: 167
Period size: 24 Copynumber: 4.0 Consensus size: 24
86399971 AGGCTGTCAT
86399981 GAGAAGATTTAGGAGCTGATAAGG
1 GAGAAGATTTAGGAGCTGATAAGG
*
86400005 GAGAGGATTTAGGAGCTGATAAGG
1 GAGAAGATTTAGGAGCTGATAAGG
*
86400029 GAGAAGATTTAGGAGCTGATAAAG
1 GAGAAGATTTAGGAGCTGATAAGG
86400053 GAGAAGATTTAGGAGCTGATCAAGG
1 GAGAAGATTTAGGAGCTGAT-AAGG
86400078 AGTAGGAGTT
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
24 65 0.96
25 3 0.04
ACGTcount: A:0.37, C:0.05, G:0.37, T:0.21
Consensus pattern (24 bp):
GAGAAGATTTAGGAGCTGATAAGG
Found at i:86418985 original size:42 final size:40
Alignment explanation
Indices: 86418938--86419050 Score: 149
Period size: 40 Copynumber: 2.8 Consensus size: 40
86418928 CGAATTCTCA
*
86418938 CACACTAAGTGCCAATACATAGCCGAATCTAT-TTCAATCCCG
1 CACACTAAGTGCC-ATACATAGCCGAATCTATCTACAAT--CG
* * *
86418980 CACACTAAATGCCATACATAGCCGAAGCTATCTAGAATCG
1 CACACTAAGTGCCATACATAGCCGAATCTATCTACAATCG
86419020 CACACTAAGTGCCATACATAGCCGAAT-TATC
1 CACACTAAGTGCCATACATAGCCGAATCTATC
86419051 GTCAAATATG
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
39 4 0.06
40 27 0.42
41 17 0.27
42 16 0.25
ACGTcount: A:0.35, C:0.29, G:0.13, T:0.22
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCCGAATCTATCTACAATCG
Found at i:86424779 original size:39 final size:39
Alignment explanation
Indices: 86424720--86424799 Score: 142
Period size: 39 Copynumber: 2.1 Consensus size: 39
86424710 CCTCTCCTCC
86424720 CTGGCCACCCGTTACAAGTCTAGAATCAGACGGTGCTAT
1 CTGGCCACCCGTTACAAGTCTAGAATCAGACGGTGCTAT
* *
86424759 CTGGCTACCCGTTACGAGTCTAGAATCAGACGGTGCTAT
1 CTGGCCACCCGTTACAAGTCTAGAATCAGACGGTGCTAT
86424798 CT
1 CT
86424800 CTTCAATGGG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CTGGCCACCCGTTACAAGTCTAGAATCAGACGGTGCTAT
Found at i:86429464 original size:54 final size:54
Alignment explanation
Indices: 86429274--86429481 Score: 217
Period size: 54 Copynumber: 3.9 Consensus size: 54
86429264 TTTCCTTTTT
* * * * ** *
86429274 GAACTTACCATTGTCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTAT-
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * **
86429327 GAACTCA-CTAATGCCATGCCTTGGA-ATTGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTTATC-AATGCCATGCCTT-GACATGGTCTTACATGATATCC-TTGCCTTATA
* * *
86429381 GTAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCATATA
1 G-AACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
*
86429436 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
86429482 ATCTTACCAA
Statistics
Matches: 129, Mismatches: 18, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
52 3 0.02
53 37 0.29
54 47 0.36
55 39 0.30
56 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (54 bp):
GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:86429515 original size:47 final size:47
Alignment explanation
Indices: 86429460--86429581 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
86429450 CATGCCTTGG
* *
86429460 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
86429507 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
86429554 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
86429582 GTGCCAATGC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:86436136 original size:54 final size:54
Alignment explanation
Indices: 86435956--86436149 Score: 212
Period size: 55 Copynumber: 3.6 Consensus size: 54
86435946 TTACCATTGT
* * * * * * * *
86435956 CATGTCTTGACATGGCCTTACGTGGTATCTTTGCGTTAT-GAACTCACCAATGC
1 CATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGC
** *
86436009 CATGCCTTGGCATGGTCTTACATGGGA-CCTTTGTCTTATAGTAACTCATCAATGC
1 CATGCCTTGGCATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAATGC
* ** * *
86436064 CATGTCTTAACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGC
1 CATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGC
86436118 CATGCCTTGGCATGGTCTTACATGATATCCTT
1 CATGCCTTGGCATGGTCTTACATGATATCCTT
86436150 ATCTTACCAA
Statistics
Matches: 116, Mismatches: 21, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
52 1 0.01
53 29 0.25
54 41 0.35
55 43 0.37
56 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (54 bp):
CATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGC
Found at i:86436155 original size:109 final size:108
Alignment explanation
Indices: 86435956--86436155 Score: 267
Period size: 109 Copynumber: 1.8 Consensus size: 108
86435946 TTACCATTGT
* * * * *
86435956 CATGTCTTGACATGGCCTTACGTGGTATCTTTGCGTTATGAACTCACCAATGCCATGCCTTGGCA
1 CATGTCTTAACATGGCCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCA
* *
86436021 TGGTCTTACATGGGACCTTTGTCTTATAGTAACTCATCAATGC
66 TGGTCTTACATGAGACCTTTATCTTATAGTAACTCATCAATGC
* * * *
86436064 CATGTCTTAACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGC
1 CATGTCTTAACATGGCCTTACATGATATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTTGGC
*
86436129 ATGGTCTTACATGATATCC-TTATCTTA
65 ATGGTCTTACATGAGA-CCTTTATCTTA
86436156 CCAAATGTCA
Statistics
Matches: 78, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
108 32 0.41
109 44 0.56
110 2 0.03
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.36
Consensus pattern (108 bp):
CATGTCTTAACATGGCCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCA
TGGTCTTACATGAGACCTTTATCTTATAGTAACTCATCAATGC
Found at i:86436181 original size:47 final size:47
Alignment explanation
Indices: 86436128--86436248 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
86436118 CATGCCTTGG
* *
86436128 CATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
86436175 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
86436222 CATGGTCTTACAT-AGTATCCTTGTCTT
1 CATGGTCTTACATGA-TATCCTTGTCTT
86436249 GGTGCCAATG
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:86436323 original size:47 final size:45
Alignment explanation
Indices: 86436112--86436381 Score: 143
Period size: 47 Copynumber: 5.8 Consensus size: 45
86436102 TAGAACTTAT
* * ** * *
86436112 CAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATC-TTAC
1 CAATGCCATGTCTTGACATGGTCTTACATGGGATCCTT-GCAATAC
* *** * *
86436157 CAAATGTCATGTTCCAAACATGGTCTTACATGGTATCCTTGTC-TTAC
1 C-AATGCCATG-TCTTGACATGGTCTTACATGGGATCCTTG-CAATAC
*** * * ** *
86436204 CAAATGCCATGTTCCAAACATGGTCTTACATAGTATCCTTGTCTTGGTGC
1 C-AATGCCATG-TCTTGACATGGTCTTACATGGGATCCTTG-C--AATAC
** * * *
86436254 CAATGCCACATCTTAATC-TGGTCTTACAT-GGAGTCCTTAATCAATGC
1 CAATGCCATGTCTTGA-CATGGTCTTACATGGGA-TCCTT--GCAATAC
**
86436301 CAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCCTAC
1 CAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCAATAC
*
86436346 CAATGCCATGTCTTGACATGGTCTTACATGGTATCC
1 CAATGCCATGTCTTGACATGGTCTTACATGGGATCC
86436382 CTAACCGTCA
Statistics
Matches: 185, Mismatches: 28, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
45 39 0.21
46 9 0.05
47 102 0.55
48 23 0.12
49 9 0.05
50 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.34
Consensus pattern (45 bp):
CAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCAATAC
Found at i:86441308 original size:19 final size:18
Alignment explanation
Indices: 86441274--86441320 Score: 69
Period size: 19 Copynumber: 2.6 Consensus size: 18
86441264 TTTTTATCAT
86441274 TTATCATTTA-TCAGGCA
1 TTATCATTTATTCAGGCA
86441291 TTATCATTTATTTCAGGCA
1 TTATCATTTA-TTCAGGCA
*
86441310 TTATCACTTAT
1 TTATCATTTAT
86441321 CGGGCTTTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 10 0.37
18 1 0.04
19 16 0.59
ACGTcount: A:0.28, C:0.17, G:0.09, T:0.47
Consensus pattern (18 bp):
TTATCATTTATTCAGGCA
Found at i:86442961 original size:32 final size:32
Alignment explanation
Indices: 86442924--86442987 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
86442914 AGATCGGATT
86442924 GTCGAACCCAAAGGAACCAAGAGTACTAGTAA
1 GTCGAACCCAAAGGAACCAAGAGTACTAGTAA
86442956 GTCGAACCCAAAGGAACCAAGAGTACTAGTAA
1 GTCGAACCCAAAGGAACCAAGAGTACTAGTAA
86442988 TTACTTTCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.44, C:0.22, G:0.22, T:0.12
Consensus pattern (32 bp):
GTCGAACCCAAAGGAACCAAGAGTACTAGTAA
Found at i:86456772 original size:17 final size:17
Alignment explanation
Indices: 86456750--86456811 Score: 54
Period size: 17 Copynumber: 3.4 Consensus size: 17
86456740 TAAAATATTA
86456750 TGTGATTATATGAGTAT
1 TGTGATTATATGAGTAT
*
86456767 TGTGATATATGCTTGAATGT-T
1 TGTGAT-TAT--ATG-A-GTAT
86456788 ATGTGATTATATGAGTAT
1 -TGTGATTATATGAGTAT
86456806 TGTGAT
1 TGTGAT
86456812 AAATGCTTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
17 14 0.39
18 5 0.14
19 2 0.06
20 2 0.06
21 5 0.14
22 8 0.22
ACGTcount: A:0.27, C:0.02, G:0.24, T:0.47
Consensus pattern (17 bp):
TGTGATTATATGAGTAT
Found at i:86456801 original size:39 final size:39
Alignment explanation
Indices: 86456720--86456938 Score: 312
Period size: 39 Copynumber: 5.6 Consensus size: 39
86456710 AACATGTTTT
* *
86456720 TGAGTATTTTGATATATGCTTAAAATATTATGTGATTATA
1 TGAGTATTGTGATATATGCTT-AAATGTTATGTGATTATA
*
86456760 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* *
86456799 TGAGTATTGTGATAAATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
*
86456838 TGAGTATTGTGATATATACTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* * *
86456877 TGAGTATTCTGACATATGCTTAAATTTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
** * *
86456916 TGCTTAATATGATATATGCTTAA
1 TGAGTATTGTGATATATGCTTAA
86456939 TATGATATAT
Statistics
Matches: 163, Mismatches: 16, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
39 143 0.88
40 20 0.12
ACGTcount: A:0.32, C:0.04, G:0.18, T:0.46
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
Found at i:86456946 original size:14 final size:15
Alignment explanation
Indices: 86456913--86456965 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 15
86456903 TTATGTGATT
86456913 ATATGCTTAATATGA
1 ATATGCTTAATATGA
86456928 TATATGCTTAATATGA
1 -ATATGCTTAATATGA
*
86456944 TATATGCTTAAAAGTGA
1 -ATATGCTTAATA-TGA
86456961 ATATG
1 ATATG
86456966 ATTACCATGT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
16 32 0.91
17 3 0.09
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.40
Consensus pattern (15 bp):
ATATGCTTAATATGA
Found at i:86456965 original size:16 final size:16
Alignment explanation
Indices: 86456912--86456954 Score: 86
Period size: 16 Copynumber: 2.7 Consensus size: 16
86456902 TTTATGTGAT
86456912 TATATGCTTAATATGA
1 TATATGCTTAATATGA
86456928 TATATGCTTAATATGA
1 TATATGCTTAATATGA
86456944 TATATGCTTAA
1 TATATGCTTAA
86456955 AAGTGAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.37, C:0.07, G:0.12, T:0.44
Consensus pattern (16 bp):
TATATGCTTAATATGA
Found at i:86457841 original size:68 final size:68
Alignment explanation
Indices: 86457732--86457868 Score: 238
Period size: 68 Copynumber: 2.0 Consensus size: 68
86457722 TCAGTTTTGA
* * * *
86457732 GATTTTGCTGAGTGGACCTTATACATGTTTAATTATTATTACAAGAATATTTGATGTATGTTCAG
1 GATTTTGCTAAATGGACCTTATACATGTTTAATTATTATTACAAGAATATCTAATGTATGTTCAG
86457797 CAT
66 CAT
86457800 GATTTTGCTAAATGGACCTTATACATGTTTAATTATTATTACAAGAATATCTAATGTATGTTCAG
1 GATTTTGCTAAATGGACCTTATACATGTTTAATTATTATTACAAGAATATCTAATGTATGTTCAG
86457865 CAT
66 CAT
86457868 G
1 G
86457869 CAACAATGAT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 65 1.00
ACGTcount: A:0.31, C:0.11, G:0.16, T:0.42
Consensus pattern (68 bp):
GATTTTGCTAAATGGACCTTATACATGTTTAATTATTATTACAAGAATATCTAATGTATGTTCAG
CAT
Found at i:86475807 original size:40 final size:40
Alignment explanation
Indices: 86475752--86475974 Score: 367
Period size: 40 Copynumber: 5.6 Consensus size: 40
86475742 TTGAATGCTG
*
86475752 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
86475792 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
86475832 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
86475872 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
86475912 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
86475951 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
86475975 TGAACGAGGA
Statistics
Matches: 175, Mismatches: 8, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 34 0.19
40 141 0.81
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:86483060 original size:40 final size:40
Alignment explanation
Indices: 86483005--86483227 Score: 367
Period size: 40 Copynumber: 5.6 Consensus size: 40
86482995 TTGAATGCTG
*
86483005 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
86483045 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
86483085 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
86483125 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
86483165 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
86483204 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
86483228 TGAACGAGGA
Statistics
Matches: 175, Mismatches: 8, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 34 0.19
40 141 0.81
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:86487550 original size:20 final size:20
Alignment explanation
Indices: 86487518--86487555 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
86487508 TGTTTCACAT
86487518 TCATATAACTAATATTTATA
1 TCATATAACTAATATTTATA
*
86487538 TCAT-TAACATAATTTTTA
1 TCATATAAC-TAATATTTA
86487556 ACTTAATAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (20 bp):
TCATATAACTAATATTTATA
Found at i:86497178 original size:40 final size:40
Alignment explanation
Indices: 86497115--86497335 Score: 268
Period size: 40 Copynumber: 5.5 Consensus size: 40
86497105 TATTCAAATG
* * *
86497115 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* ** * **
86497155 ATATCCGGACTAAGATTCGAAGGCATTTGTGCGAGTTTCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
86497195 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
86497235 ATATCCAGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
86497275 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
86497315 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
86497336 ATACTTGGGT
Statistics
Matches: 154, Mismatches: 25, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
38 1 0.01
39 13 0.08
40 138 0.90
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:86504289 original size:45 final size:46
Alignment explanation
Indices: 86504235--86504348 Score: 126
Period size: 50 Copynumber: 2.4 Consensus size: 46
86504225 CTCAAGATGA
*
86504235 AAGA-CATGTTTGGGACATGCATCGGCTAC-GAGATGT-GCCAGTGT
1 AAGACCATGTTTGGGACATGCATCGGC-ACGGAGATGTAGCCAGCGT
* * *
86504279 AAGACCATGTTTGGGACATGGCATTGGCACGGATATGTGAGAGCTAGCGT
1 AAGACCATGTTTGGGACAT-GCATCGGCACGGAGATGT---AGCCAGCGT
86504329 AAGACCATGTTTGGGACATG
1 AAGACCATGTTTGGGACATG
86504349 GTGTCGGCCT
Statistics
Matches: 59, Mismatches: 4, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
44 4 0.07
45 16 0.27
46 13 0.22
49 1 0.02
50 25 0.42
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (46 bp):
AAGACCATGTTTGGGACATGCATCGGCACGGAGATGTAGCCAGCGT
Found at i:86516475 original size:15 final size:15
Alignment explanation
Indices: 86516455--86516519 Score: 80
Period size: 15 Copynumber: 4.4 Consensus size: 15
86516445 ATAACGTAAA
86516455 TTCAATACTTAATTT
1 TTCAATACTTAATTT
*
86516470 TTCAATACTTATTTT
1 TTCAATACTTAATTT
*
86516485 TTCAATGCTT-ATTT
1 TTCAATACTTAATTT
*
86516499 TTC-ATCATTTAATTT
1 TTCAAT-ACTTAATTT
86516514 TTCAAT
1 TTCAAT
86516520 TTATCAAACA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
13 2 0.05
14 8 0.19
15 30 0.71
16 2 0.05
ACGTcount: A:0.28, C:0.14, G:0.02, T:0.57
Consensus pattern (15 bp):
TTCAATACTTAATTT
Found at i:86516498 original size:29 final size:30
Alignment explanation
Indices: 86516455--86516519 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
86516445 ATAACGTAAA
*
86516455 TTCAATACTTAATTTTTCAAT-ACTTATTTT
1 TTCAATACTTAATTTTTC-ATCACTTAATTT
* *
86516485 TTCAATGCTT-ATTTTTCATCATTTAATTT
1 TTCAATACTTAATTTTTCATCACTTAATTT
86516514 TTCAAT
1 TTCAAT
86516520 TTATCAAACA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 2 0.06
29 20 0.65
30 9 0.29
ACGTcount: A:0.28, C:0.14, G:0.02, T:0.57
Consensus pattern (30 bp):
TTCAATACTTAATTTTTCATCACTTAATTT
Found at i:86517185 original size:19 final size:19
Alignment explanation
Indices: 86517161--86517201 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
86517151 GAGCAGTTGT
86517161 TGGAAGAATGAAAAGAATG
1 TGGAAGAATGAAAAGAATG
*
86517180 TGGAAGAATGGAAAGAATG
1 TGGAAGAATGAAAAGAATG
86517199 TGG
1 TGG
86517202 CTTTATATCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.46, C:0.00, G:0.37, T:0.17
Consensus pattern (19 bp):
TGGAAGAATGAAAAGAATG
Found at i:86520922 original size:27 final size:27
Alignment explanation
Indices: 86520863--86520943 Score: 101
Period size: 27 Copynumber: 3.0 Consensus size: 27
86520853 GCTAACACCC
*
86520863 AGCTCGCCAAACAGACTAGAG-AAACTCT
1 AGCTCACCAAACAGACT-G-GCAAACTCT
*
86520891 AGCTCACCAAATAGACTGGCAAACTCT
1 AGCTCACCAAACAGACTGGCAAACTCT
* *
86520918 AGCTCACCAAACAGATTGGCTAACTC
1 AGCTCACCAAACAGACTGGCAAACTC
86520944 GACTTTCAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
26 1 0.02
27 31 0.66
28 15 0.32
ACGTcount: A:0.37, C:0.30, G:0.16, T:0.17
Consensus pattern (27 bp):
AGCTCACCAAACAGACTGGCAAACTCT
Found at i:86525288 original size:26 final size:27
Alignment explanation
Indices: 86525226--86525288 Score: 78
Period size: 26 Copynumber: 2.4 Consensus size: 27
86525216 ATTTTATGTT
*
86525226 TTTTTTAAAT-TATGAATTTTTTATAA
1 TTTTTTAAATATAAGAATTTTTTATAA
*
86525252 TTTTTTGAATATAAG-ATATTTTTAT-A
1 TTTTTTAAATATAAGAAT-TTTTTATAA
86525278 TTTTTTAAATA
1 TTTTTTAAATA
86525289 ATTTATTAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 22 0.69
27 10 0.31
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (27 bp):
TTTTTTAAATATAAGAATTTTTTATAA
Found at i:86530002 original size:26 final size:26
Alignment explanation
Indices: 86529971--86530022 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
86529961 TTTGAGTTTG
86529971 GCTATGTGCTAAATTTGTTGGATGGT
1 GCTATGTGCTAAATTTGTTGGATGGT
86529997 GCTATGTGCTAAATTTGTTGGATGGT
1 GCTATGTGCTAAATTTGTTGGATGGT
86530023 TGATTGTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.19, C:0.08, G:0.31, T:0.42
Consensus pattern (26 bp):
GCTATGTGCTAAATTTGTTGGATGGT
Found at i:86533165 original size:42 final size:42
Alignment explanation
Indices: 86533104--86533185 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
86533094 CCGTATCAAT
*
86533104 GCCATATCCCGGATATGGTCTTACATGAAAT-ATCATATCGAC
1 GCCATATCCCGGACATGGTCTTACATGAAATCA-CATATCGAC
* * *
86533146 GCCATGTCCCTGACATGGTCTTATATGAAATCACATATCG
1 GCCATATCCCGGACATGGTCTTACATGAAATCACATATCG
86533186 GTACCGTATC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 34 0.97
43 1 0.03
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (42 bp):
GCCATATCCCGGACATGGTCTTACATGAAATCACATATCGAC
Found at i:86535553 original size:24 final size:24
Alignment explanation
Indices: 86535523--86535573 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
86535513 TATAAAGACG
86535523 TCTTATTCTTTAAAAATTATTTTA
1 TCTTATTCTTTAAAAATTATTTTA
86535547 TCTTATTCTTTAAAAATTATTTTA
1 TCTTATTCTTTAAAAATTATTTTA
86535571 TCT
1 TCT
86535574 CTAATTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.31, C:0.10, G:0.00, T:0.59
Consensus pattern (24 bp):
TCTTATTCTTTAAAAATTATTTTA
Found at i:86537608 original size:12 final size:12
Alignment explanation
Indices: 86537591--86537617 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
86537581 CACACGCTCA
86537591 TGTGCTAAGCCG
1 TGTGCTAAGCCG
86537603 TGTGCTAAGCCG
1 TGTGCTAAGCCG
86537615 TGT
1 TGT
86537618 AATAGCCTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.22, G:0.33, T:0.30
Consensus pattern (12 bp):
TGTGCTAAGCCG
Found at i:86537751 original size:12 final size:12
Alignment explanation
Indices: 86537734--86537767 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
86537724 GGACGAAAAT
86537734 AAGCCATTTTAC
1 AAGCCATTTTAC
86537746 AAGCCATTTTAC
1 AAGCCATTTTAC
86537758 AAGCCATTTT
1 AAGCCATTTT
86537768 TCTCACCCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.32, C:0.24, G:0.09, T:0.35
Consensus pattern (12 bp):
AAGCCATTTTAC
Found at i:86539697 original size:16 final size:16
Alignment explanation
Indices: 86539678--86539708 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86539668 CTTCTTCACT
86539678 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
86539694 TACTTACTTACTTAA
1 TACTCACTTACTTAA
86539709 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:86539714 original size:20 final size:20
Alignment explanation
Indices: 86539675--86539714 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
86539665 AAACTTCTTC
* *
86539675 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
86539695 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
86539715 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:86540091 original size:108 final size:110
Alignment explanation
Indices: 86539947--86540144 Score: 303
Period size: 108 Copynumber: 1.8 Consensus size: 110
86539937 ATCCTTTTGA
* * *
86539947 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCTA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTA-GAAACCTCACCAA
86540010 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
86540055 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
86540120 TGCCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
86540145 CGGTATCCTT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.60
109 6 0.08
110 25 0.31
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:86540154 original size:55 final size:53
Alignment explanation
Indices: 86539900--86540154 Score: 254
Period size: 55 Copynumber: 4.8 Consensus size: 53
86539890 ACACGGGTAC
* * *
86539900 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-GAAA
1 CTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* *
86539949 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* * * *
86540002 CTCACC-TATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAT-TGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCC-T-TAGAAA
* * * * *
86540057 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAA
1 CTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* *
86540110 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACC-ATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
86540155 AAACCCTAAT
Statistics
Matches: 168, Mismatches: 24, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
49 39 0.23
52 5 0.03
53 44 0.26
54 9 0.05
55 69 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:86543769 original size:16 final size:16
Alignment explanation
Indices: 86543748--86543787 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
86543738 ATCAATAAAC
86543748 CATTCACAAGTGATTG
1 CATTCACAAGTGATTG
86543764 CATTCACAAGTGATTG
1 CATTCACAAGTGATTG
*
86543780 CATACACA
1 CATTCACA
86543788 TCATTTTATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.28
Consensus pattern (16 bp):
CATTCACAAGTGATTG
Found at i:86544236 original size:39 final size:39
Alignment explanation
Indices: 86544165--86544325 Score: 169
Period size: 39 Copynumber: 4.1 Consensus size: 39
86544155 AGTACTGAAA
* * * * * *
86544165 TACAACAGGGGAACATAGGTGCGTTCAAGGGTATCAAAG
1 TACAACAGGGGCACGTAAGTGAGATCAAGGGTACCAAAG
* * *
86544204 TACAACAGGGGCACGTAAGTGTGATCAGGGGTACCGAAG
1 TACAACAGGGGCACGTAAGTGAGATCAAGGGTACCAAAG
* **
86544243 CACAGTAGGGGCACGTAAGTGAGATCAAGGGTACCAAAG
1 TACAACAGGGGCACGTAAGTGAGATCAAGGGTACCAAAG
* * * * *
86544282 TAGAACAGGGGCACGTAAGTGAAATAAATGGTACCGAAG
1 TACAACAGGGGCACGTAAGTGAGATCAAGGGTACCAAAG
86544321 TACAA
1 TACAA
86544326 GAGTTTTCTA
Statistics
Matches: 99, Mismatches: 23, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
39 99 1.00
ACGTcount: A:0.37, C:0.16, G:0.32, T:0.16
Consensus pattern (39 bp):
TACAACAGGGGCACGTAAGTGAGATCAAGGGTACCAAAG
Found at i:86547601 original size:23 final size:23
Alignment explanation
Indices: 86547558--86547622 Score: 78
Period size: 23 Copynumber: 2.8 Consensus size: 23
86547548 CAGCTCTAAA
*
86547558 AGCTTACTATTCTCAGTTCGT-ATG
1 AGCTTACTATT-TCAGCTCGTCA-G
*
86547582 AGCTTACTGTTTCAGCTCGTCAG
1 AGCTTACTATTTCAGCTCGTCAG
*
86547605 AGCTTACCATTTCAGCTC
1 AGCTTACTATTTCAGCTC
86547623 AATAGAGATT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
23 25 0.69
24 11 0.31
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.37
Consensus pattern (23 bp):
AGCTTACTATTTCAGCTCGTCAG
Found at i:86553460 original size:39 final size:39
Alignment explanation
Indices: 86553339--86553462 Score: 119
Period size: 39 Copynumber: 3.2 Consensus size: 39
86553329 ATTACTGAAA
* * * *
86553339 TACAACAGGGGCACGCAAGAGTGATCAGGGGTACCGAAG
1 TACAACAGGGGCACGCAAGTGAGATAAGGGGTACCAAAG
* *
86553378 TACAACAGGGGCACACAAGT-ACGATGAAGGGTGT-CGAAA-
1 TACAACAGGGGCACGCAAGTGA-GAT-AAGGG-GTACCAAAG
** *
86553417 TACAACAGGGGCACGTGAGTGAGATTAGGGGTACCAAAG
1 TACAACAGGGGCACGCAAGTGAGATAAGGGGTACCAAAG
86553456 TACAACA
1 TACAACA
86553463 ATTTTCTACT
Statistics
Matches: 68, Mismatches: 11, Indels: 12
0.75 0.12 0.13
Matches are distributed among these distances:
37 2 0.03
38 8 0.12
39 48 0.71
40 8 0.12
41 2 0.03
ACGTcount: A:0.36, C:0.19, G:0.32, T:0.13
Consensus pattern (39 bp):
TACAACAGGGGCACGCAAGTGAGATAAGGGGTACCAAAG
Found at i:86555519 original size:23 final size:23
Alignment explanation
Indices: 86555493--86555546 Score: 99
Period size: 23 Copynumber: 2.3 Consensus size: 23
86555483 TCGAGATTTC
86555493 TGAGAAATTCAACGGGATTAACA
1 TGAGAAATTCAACGGGATTAACA
*
86555516 TGAGAAATTCAATGGGATTAACA
1 TGAGAAATTCAACGGGATTAACA
86555539 TGAGAAAT
1 TGAGAAAT
86555547 AAAGATGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.44, C:0.09, G:0.22, T:0.24
Consensus pattern (23 bp):
TGAGAAATTCAACGGGATTAACA
Found at i:86558766 original size:32 final size:33
Alignment explanation
Indices: 86558704--86558764 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
86558694 TTTTCATACA
86558704 TAATCAAATATTTTTATTTTGAAAATTTTTAAT
1 TAATCAAATATTTTTATTTTGAAAATTTTTAAT
* *
86558737 TAATTAAATA-TTTTATTTT-AATATTTTT
1 TAATCAAATATTTTTATTTTGAAAATTTTT
86558765 TACTTGTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 8 0.31
32 9 0.35
33 9 0.35
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (33 bp):
TAATCAAATATTTTTATTTTGAAAATTTTTAAT
Found at i:86567850 original size:14 final size:14
Alignment explanation
Indices: 86567831--86567871 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
86567821 TTCACACGCG
86567831 AAAATTGACTACAT
1 AAAATTGACTACAT
86567845 AAAA-T---TACAT
1 AAAATTGACTACAT
86567855 AAAATTGACTACAT
1 AAAATTGACTACAT
86567869 AAA
1 AAA
86567872 TTTGCATATC
Statistics
Matches: 23, Mismatches: 0, Indels: 8
0.74 0.00 0.26
Matches are distributed among these distances:
10 9 0.39
11 1 0.04
13 1 0.04
14 12 0.52
ACGTcount: A:0.56, C:0.12, G:0.05, T:0.27
Consensus pattern (14 bp):
AAAATTGACTACAT
Found at i:86571606 original size:12 final size:12
Alignment explanation
Indices: 86571591--86571620 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
86571581 CCCAAGTAAG
86571591 ATTGAAAGCAAA
1 ATTGAAAGCAAA
86571603 ATTGAAAGCAAA
1 ATTGAAAGCAAA
86571615 ATTGAA
1 ATTGAA
86571621 GGACCATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.57, C:0.07, G:0.17, T:0.20
Consensus pattern (12 bp):
ATTGAAAGCAAA
Found at i:86575179 original size:42 final size:41
Alignment explanation
Indices: 86575121--86575274 Score: 175
Period size: 42 Copynumber: 3.7 Consensus size: 41
86575111 TAAGACCATG
* *
86575121 TGTAAGACCATATCTGGGATATGGCATCAATATGAGACTTCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGA-TTCA
* * * * *
86575163 TGTAAGACCATATCTGGGATATGGAATTGATGTAAGTTTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAG-ATTCA
* *
86575205 TGTAAGACCATAGT-TGGGCTAATGGCATCGATACGAGATTACA
1 TGTAAGACCATA-TCTGGGAT-ATGGCATCGATATGAGATT-CA
86575248 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
86575275 TGGTATGGTA
Statistics
Matches: 92, Mismatches: 15, Indels: 10
0.79 0.13 0.09
Matches are distributed among these distances:
42 61 0.66
43 31 0.34
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (41 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTCA
Found at i:86575263 original size:85 final size:84
Alignment explanation
Indices: 86575121--86575276 Score: 226
Period size: 85 Copynumber: 1.8 Consensus size: 84
86575111 TAAGACCATG
* *
86575121 TGTAAGACCATATCTGGGATATGGCATCAATATGAGACTTCGTGTAAGACCATATCTGGGATATG
1 TGTAAGACCATATCTGGGATATGGCATCAATACGAGACTTCATGTAAGACCATATCTGGGATATG
86575186 GAATTGATGTAAGTTTTCA
66 GAATTGATGTAAGTTTTCA
* *
86575205 TGTAAGACCATAGT-TGGGCTAATGGCATCGATACGAGA-TTACATGTAAGACCATATCTGGGAT
1 TGTAAGACCATA-TCTGGGAT-ATGGCATCAATACGAGACTT-CATGTAAGACCATATCTGGGAT
*
86575268 ATGGCATTG
63 ATGGAATTG
86575277 GTATGGTACC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
84 19 0.30
85 45 0.70
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (84 bp):
TGTAAGACCATATCTGGGATATGGCATCAATACGAGACTTCATGTAAGACCATATCTGGGATATG
GAATTGATGTAAGTTTTCA
Found at i:86580821 original size:24 final size:24
Alignment explanation
Indices: 86580789--86580852 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 24
86580779 TGGCTTGGAG
*
86580789 GAGCTTACCATTTACAGCTCATAA
1 GAGCATACCATTTACAGCTCATAA
* * * *
86580813 GAGCATACCATTCAAAGCTCGTAT
1 GAGCATACCATTTACAGCTCATAA
*
86580837 GAGCATA-CATGTACAG
1 GAGCATACCATTTACAG
86580853 GAATTGATGG
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
23 6 0.19
24 26 0.81
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.25
Consensus pattern (24 bp):
GAGCATACCATTTACAGCTCATAA
Found at i:86585963 original size:39 final size:39
Alignment explanation
Indices: 86585909--86586038 Score: 224
Period size: 39 Copynumber: 3.3 Consensus size: 39
86585899 TAATGGAGAA
*
86585909 TTATATCCGGGCTAAGTCCCGAAGGCATTCATGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
86585948 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
86585987 TTATATCCGGGCTAAGCCCCGAAAGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
86586026 TTATATCCGGGCT
1 TTATATCCGGGCT
86586039 TAAAGTCCGG
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 87 1.00
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Done.