Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 262 of 333
Found at i:86586671 original size:43 final size:43
Alignment explanation
Indices: 86586610--86586697 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
86586600 TGGTTATAAG
86586610 ATAAAAATTATATTCTTAGACTTATTAATGAGTCTAGTTTCAA
1 ATAAAAATTATATTCTTAGACTTATTAATGAGTCTAGTTTCAA
*
86586653 ATAAAAATTATATTCTTAGACTTCTTAATGAGTCTAGTTTCAA
1 ATAAAAATTATATTCTTAGACTTATTAATGAGTCTAGTTTCAA
86586696 AT
1 AT
86586698 GAAATAAACA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.39, C:0.10, G:0.09, T:0.42
Consensus pattern (43 bp):
ATAAAAATTATATTCTTAGACTTATTAATGAGTCTAGTTTCAA
Found at i:86590294 original size:39 final size:40
Alignment explanation
Indices: 86590186--86590370 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
86590176 TCGAATGATA
* * * *
86590186 TCCGTGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGA-TCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
86590225 ATCCGGACTAAGAT-CCGAAGGAATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
86590266 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
86590305 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
86590344 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
86590371 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.28
40 77 0.63
41 11 0.09
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:86590392 original size:79 final size:79
Alignment explanation
Indices: 86590239--86590403 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
86590229 GGACTAAGAT
* **
86590239 CCGAAGGAATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGAATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
86590304 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
86590318 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGAATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
86590381 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
86590397 CCGAAGG
1 CCGAAGG
86590404 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGAATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:86591811 original size:5 final size:5
Alignment explanation
Indices: 86591801--86591825 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
86591791 TAACAAGATG
86591801 AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT
86591826 TTGAAATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:86595491 original size:39 final size:39
Alignment explanation
Indices: 86595448--86595553 Score: 185
Period size: 39 Copynumber: 2.7 Consensus size: 39
86595438 GGGTAAGTTT
*
86595448 CGAAGGCATTCGTGCTGGTGTTATATCCAGGCCAAGTCC
1 CGAAGGCATTCGTGCTGGTGTTATATCCAGGCCAAGCCC
*
86595487 CGAAGGCATTCGTGCTGGTGTTATATCCAGGCTAAGCCC
1 CGAAGGCATTCGTGCTGGTGTTATATCCAGGCCAAGCCC
*
86595526 CGAAGGCATTCGTGCTGGTATTATATCC
1 CGAAGGCATTCGTGCTGGTGTTATATCC
86595554 GGGCTTAAAG
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 64 1.00
ACGTcount: A:0.21, C:0.25, G:0.27, T:0.27
Consensus pattern (39 bp):
CGAAGGCATTCGTGCTGGTGTTATATCCAGGCCAAGCCC
Found at i:86600036 original size:27 final size:26
Alignment explanation
Indices: 86600001--86600112 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
86599991 AGCATGGCTG
* *
86600001 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
86600027 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
* * *
86600055 CCAGAATAGAAATATGTGGTAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
86600082 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
86600109 CCAG
1 CCAG
86600113 GACGCTTCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 6 0.08
27 49 0.68
28 17 0.24
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:86605456 original size:6 final size:6
Alignment explanation
Indices: 86605447--86605472 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
86605437 TCGACCTTGA
86605447 CCATTT CCATTT CCATTT CCATTT CC
1 CCATTT CCATTT CCATTT CCATTT CC
86605473 GCCCCTACCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.38, G:0.00, T:0.46
Consensus pattern (6 bp):
CCATTT
Found at i:86607875 original size:28 final size:26
Alignment explanation
Indices: 86607820--86607904 Score: 98
Period size: 27 Copynumber: 3.2 Consensus size: 26
86607810 AGCATGGCTG
* *
86607820 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
86607846 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
* * *
86607874 CCAAAATAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
86607901 CCAG
1 CCAG
86607905 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
26 5 0.10
27 29 0.58
28 16 0.32
ACGTcount: A:0.40, C:0.22, G:0.24, T:0.14
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:86609350 original size:24 final size:24
Alignment explanation
Indices: 86609323--86609373 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
86609313 CTAGATTTCC
* *
86609323 TCCCTTATCTACTCTTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
86609347 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
86609371 TCC
1 TCC
86609374 TGACAGACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.25, C:0.37, G:0.00, T:0.37
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:86615475 original size:28 final size:28
Alignment explanation
Indices: 86615444--86615513 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
86615434 ATATTTTCCT
*
86615444 TCGCACACTTAGTGCTCGA-TAATCAAAC
1 TCGCACACTTAGTGCTC-ATTAACCAAAC
86615472 TCGCACACTTAGTGCTCATTAACCAAAC
1 TCGCACACTTAGTGCTCATTAACCAAAC
*
86615500 TCGCACGCTTAGTG
1 TCGCACACTTAGTG
86615514 AAATTTTCAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
27 1 0.03
28 38 0.97
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.26
Consensus pattern (28 bp):
TCGCACACTTAGTGCTCATTAACCAAAC
Found at i:86616923 original size:42 final size:42
Alignment explanation
Indices: 86616825--86616981 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 42
86616815 AACAAGTACA
***
86616825 ATGCCGATGTCCCTA-ACATGGTCTTACATGTAATTCAATATCG
1 ATGCCGATGTCCC-AGACATGGTCTTACACAAAATTCAATA-CG
** *
86616868 ATGCCTTTGTCCCAGACAGGGTCTTACACAAAATT-AGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACAAAATTCA-ATACG
* *
86616910 ATGCCGATGTCCCAGACATGATCTTATACATAAATATCAAT-CG
1 ATGCCGATGTCCCAGACATGGTCTTACACA-AAAT-TCAATACG
* * *
86616953 AGGCCTATGTCCCAGACACGGTCTTACAC
1 ATGCCGATGTCCCAGACATGGTCTTACAC
86616982 GATATCTCAG
Statistics
Matches: 93, Mismatches: 16, Indels: 10
0.78 0.13 0.08
Matches are distributed among these distances:
42 29 0.31
43 60 0.65
44 3 0.03
45 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (42 bp):
ATGCCGATGTCCCAGACATGGTCTTACACAAAATTCAATACG
Found at i:86618520 original size:39 final size:39
Alignment explanation
Indices: 86618467--86618582 Score: 155
Period size: 39 Copynumber: 3.0 Consensus size: 39
86618457 CTGGACATAT
* *
86618467 TTCCAGCA-AGTAGCCTACGGACCTTAAGTCC-GAGTATAA
1 TTCCAGCACA-TAGCCTGCGGACCCTAAGTCCGGA-TATAA
* *
86618506 TTCTAGCACATAGCCTGCAGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
*
86618545 TTCCAGCACATAGCCTGCGGACCCTAAGTCTGGATATA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
86618583 CATCACTAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
39 65 0.96
40 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
Found at i:86627036 original size:21 final size:22
Alignment explanation
Indices: 86627006--86627051 Score: 85
Period size: 21 Copynumber: 2.1 Consensus size: 22
86626996 TTATACATTG
86627006 ATTTAGTAAATTAGTTTATGAA
1 ATTTAGTAAATTAGTTTATGAA
86627028 ATTT-GTAAATTAGTTTATGAA
1 ATTTAGTAAATTAGTTTATGAA
86627049 ATT
1 ATT
86627052 AGAATATGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48
Consensus pattern (22 bp):
ATTTAGTAAATTAGTTTATGAA
Found at i:86627758 original size:39 final size:39
Alignment explanation
Indices: 86627697--86627779 Score: 130
Period size: 39 Copynumber: 2.1 Consensus size: 39
86627687 GCATGATATT
* *
86627697 TGGAAACATATTCGGACCTGAGGTCCACAGGCTACGTGC
1 TGGAAACATATCCAGACCTGAGGTCCACAGGCTACGTGC
* *
86627736 TGGAAACATATCCAGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAACATATCCAGACCTGAGGTCCACAGGCTACGTGC
86627775 TGGAA
1 TGGAA
86627780 TATATCCGGG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (39 bp):
TGGAAACATATCCAGACCTGAGGTCCACAGGCTACGTGC
Found at i:86627805 original size:39 final size:39
Alignment explanation
Indices: 86627697--86627807 Score: 107
Period size: 39 Copynumber: 2.8 Consensus size: 39
86627687 GCATGATATT
* * * * *
86627697 TGGAAACATATTCGGACCTGAGGTCCACAGGCTACGTGC
1 TGGAAACATATCCAGACCTAAAGTCCGCAGGCTACGTGC
* * *
86627736 TGGAAACATATCCAGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAACATATCCAGACCTAAAGTCCGCAGGCTACGTGC
* * *
86627775 TGG-AATATATCCGGGCCTAAAGTCCTGCAGGCT
1 TGGAAACATATCCAGACCTAAAGTCC-GCAGGCT
86627808 TTGTGCTAGT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
38 16 0.26
39 45 0.74
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (39 bp):
TGGAAACATATCCAGACCTAAAGTCCGCAGGCTACGTGC
Found at i:86636472 original size:16 final size:16
Alignment explanation
Indices: 86636451--86636483 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
86636441 AAGAGAATTG
86636451 AAAAGAG-GAGAAAAAT
1 AAAAGAGTG-GAAAAAT
86636467 AAAAGAGTGGAAAAAT
1 AAAAGAGTGGAAAAAT
86636483 A
1 A
86636484 GAAAATATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.94
17 1 0.06
ACGTcount: A:0.67, C:0.00, G:0.24, T:0.09
Consensus pattern (16 bp):
AAAAGAGTGGAAAAAT
Found at i:86641634 original size:37 final size:37
Alignment explanation
Indices: 86641593--86641689 Score: 92
Period size: 37 Copynumber: 2.6 Consensus size: 37
86641583 AAACTCTTAA
*
86641593 GAGAGTCAATCCAACCAATAACACACCAAAATCTCAT
1 GAGAGTCAATCCAACCAATAACACACCAAAAGCTCAT
* * *
86641630 GAGAGGT-AATCC-ACCAGATAACACTCCAGACGCTCAT
1 GAGA-GTCAATCCAACCA-ATAACACACCAAAAGCTCAT
* *
86641667 GAGA-TCTAATCCATCCGATAACA
1 GAGAGTC-AATCCAACCAATAACA
86641690 TGCCTCGACA
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
35 1 0.02
36 4 0.08
37 40 0.82
38 4 0.08
ACGTcount: A:0.40, C:0.29, G:0.13, T:0.18
Consensus pattern (37 bp):
GAGAGTCAATCCAACCAATAACACACCAAAAGCTCAT
Found at i:86688743 original size:24 final size:21
Alignment explanation
Indices: 86688712--86688758 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
86688702 AAATTTTTCA
86688712 TGGAACAGGGTCACACGCCCGTG
1 TGGAACAGGG--ACACGCCCGTG
*
86688735 TGGACACAGGGACACGCTCGTG
1 TGGA-ACAGGGACACGCCCGTG
86688757 TG
1 TG
86688759 CCTTCAACAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 12 0.55
23 4 0.18
24 6 0.27
ACGTcount: A:0.21, C:0.28, G:0.36, T:0.15
Consensus pattern (21 bp):
TGGAACAGGGACACGCCCGTG
Found at i:86694923 original size:40 final size:40
Alignment explanation
Indices: 86694869--86695111 Score: 330
Period size: 40 Copynumber: 6.1 Consensus size: 40
86694859 AGATGATAAT
*
86694869 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
* * *
86694908 TTCCGGGCTACGTCCCGAAGGCATTTGTGCTAGTGAGTA-A
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
*
86694948 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
*
86694989 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
* * * *
86695029 TCCAGACTAAGTCCCGAAGACATTTGTGCGAACT-ACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTGACTATA
* *
86695069 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
86695109 TCC
1 TCC
86695112 AGTTAAAGCC
Statistics
Matches: 184, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 2 0.01
40 179 0.97
41 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
Found at i:86702645 original size:40 final size:40
Alignment explanation
Indices: 86702594--86702796 Score: 309
Period size: 40 Copynumber: 5.1 Consensus size: 40
86702584 AGATGATAAT
* *
86702594 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
86702633 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
86702674 TCCGGGCTAAGTCCCGAAGGCATTTTTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* **
86702714 TCCGGGCTAAGTCCCGAAGACATTTGTGCGAACTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* **
86702754 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
86702794 TCC
1 TCC
86702797 AGTTAAAGCC
Statistics
Matches: 149, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 148 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:86705237 original size:43 final size:43
Alignment explanation
Indices: 86705096--86705243 Score: 163
Period size: 43 Copynumber: 3.4 Consensus size: 43
86705086 GATTATTGAG
* **
86705096 ATGTGATTACATGTAAGACCATGTTTGAGACATTGGCAT-TTT
1 ATGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCAAT
* *
86705138 AGTGTGATTACGTGTAAGACAATGTTTGGGACATTGGCATCAAT
1 A-TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCAAT
**** * * *
86705182 AACCAATTACATGTAAGACCCTGTCTGGGACAGTGGCATCAAT
1 ATGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCAAT
*
86705225 ATGTGATAACATGTAAGAC
1 ATGTGATTACATGTAAGAC
86705244 TATATCTGGG
Statistics
Matches: 85, Mismatches: 19, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
42 1 0.01
43 82 0.96
44 2 0.02
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCAAT
Found at i:86705252 original size:43 final size:43
Alignment explanation
Indices: 86705096--86705262 Score: 158
Period size: 43 Copynumber: 3.9 Consensus size: 43
86705086 GATTATTGAG
* * **
86705096 ATGTGATTACATGTAAGACCATGTTTGAGACATTGGCAT-TTT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCAAT
* * *
86705138 AGTGTGATTACGTGTAAGACAATGTTTGGGACATTGGCATCAAT
1 A-TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCAAT
**** * *
86705182 AACCAATTACATGTAAGACCCTGTCTGGGACAGTGGCATCAAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCAAT
* * * *
86705225 ATGTGATAACATGTAAGACTATATCTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
86705263 TGTATGAGAT
Statistics
Matches: 100, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
42 7 0.07
43 91 0.91
44 2 0.02
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.31
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCAAT
Found at i:86705254 original size:86 final size:85
Alignment explanation
Indices: 86705101--86705262 Score: 191
Period size: 86 Copynumber: 1.9 Consensus size: 85
86705091 TTGAGATGTG
* * ** * * * *
86705101 ATTACATGTAAGACCATGTTTGAGACATTGGCATTTTAGTGTGATTACGTGTAAGACAATGTTTG
1 ATTACATGTAAGACCATGTCTGAGACAGTGGCATAATAGTGTGATAACATGTAAGACAATATCTG
86705166 GGACATTGGCATCAATAACCA
66 GGACA-TGGCATCAATAACCA
* * *
86705187 ATTACATGTAAGACCCTGTCTGGGACAGTGGCATCAATA-TGTGATAACATGTAAGACTATATCT
1 ATTACATGTAAGACCATGTCTGAGACAGTGGCAT-AATAGTGTGATAACATGTAAGACAATATCT
*
86705251 GGGATATGGCAT
65 GGGACATGGCAT
86705263 TGTATGAGAT
Statistics
Matches: 63, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
85 6 0.10
86 55 0.87
87 2 0.03
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (85 bp):
ATTACATGTAAGACCATGTCTGAGACAGTGGCATAATAGTGTGATAACATGTAAGACAATATCTG
GGACATGGCATCAATAACCA
Found at i:86715303 original size:28 final size:28
Alignment explanation
Indices: 86715240--86715390 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
86715230 GAGATTGGCG
* * * *
86715240 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
* *
86715269 CTAAGTGTGCGATTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
86715297 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
86715325 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
86715353 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
86715380 CTGAGTGTGCG
1 CTAAGTGTGCG
86715391 GACTTAATAT
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.21
28 75 0.66
29 14 0.12
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:86726353 original size:43 final size:43
Alignment explanation
Indices: 86726305--86726401 Score: 140
Period size: 43 Copynumber: 2.3 Consensus size: 43
86726295 ATGAACTCGG
* ** * *
86726305 ACACTTAGTGCCAATTAATTAGTTGAAGCTATAATTGCATCGC
1 ACACTTAGTGCCAAATAATTAGCCGAAGATAAAATTGCATCGC
*
86726348 ACACTTAGTGCCAAATAATTAGCCGAAGATAAAATTGTATCGC
1 ACACTTAGTGCCAAATAATTAGCCGAAGATAAAATTGCATCGC
86726391 ACACTTAGTGC
1 ACACTTAGTGC
86726402 TATTTACTCA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (43 bp):
ACACTTAGTGCCAAATAATTAGCCGAAGATAAAATTGCATCGC
Found at i:86730708 original size:49 final size:47
Alignment explanation
Indices: 86730556--86730731 Score: 307
Period size: 47 Copynumber: 3.7 Consensus size: 47
86730546 ATGATAGTAT
86730556 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
86730603 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
86730650 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
86730699 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
86730732 CCCGAAGGGC
Statistics
Matches: 123, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
47 79 0.64
49 40 0.33
50 4 0.03
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:86730724 original size:96 final size:95
Alignment explanation
Indices: 86730557--86730731 Score: 316
Period size: 96 Copynumber: 1.8 Consensus size: 95
86730547 TGATAGTATG
86730557 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
1 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
86730622 TGAATGTGA-AAGTGTATATATGTGATAAT
66 TGAATGTGATAAGTGTATATATGTGATAAT
*
86730651 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGT
1 GCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGT
86730716 GATGAATGTGATAAGT
64 GATGAATGTGATAAGT
86730732 CCCGAAGGGC
Statistics
Matches: 77, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
94 32 0.42
96 41 0.53
97 4 0.05
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (95 bp):
GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
TGAATGTGATAAGTGTATATATGTGATAAT
Found at i:86730905 original size:37 final size:37
Alignment explanation
Indices: 86730849--86730927 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
86730839 CCGAGCTCTA
* * *
86730849 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* **
86730886 AAGACCCGATAACTTCGTGTGGAGATTATGTTTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
86730923 AAGAC
1 AAGAC
86730928 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:86733916 original size:28 final size:28
Alignment explanation
Indices: 86733826--86733975 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
86733816 ATATTACGTC
*
86733826 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
86733853 CGCACACTTCGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
86733880 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
86733908 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
86733936 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
86733965 CGCACACTTAG
1 CGCACACTTAG
86733976 CGCCAATCTC
Statistics
Matches: 114, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 47 0.41
28 51 0.45
29 16 0.14
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:86733928 original size:55 final size:56
Alignment explanation
Indices: 86733826--86733975 Score: 223
Period size: 55 Copynumber: 2.7 Consensus size: 56
86733816 ATATTACGTC
* *
86733826 CGCACACTCAGTGCTATATAATC-AACTCGCACACTTCGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATATAATCAAACT
86733880 CGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATATAATCAAACT
* * * *
86733936 CGCACACTTAGTGCTGTACAATTTAAACCCGCACACTTAG
1 CGCACACTTAGTGCTATATAA-TCAAACTCGCACACTTAG
86733976 CGCCAATCTC
Statistics
Matches: 87, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
54 22 0.25
55 26 0.30
56 23 0.26
57 16 0.18
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.27
Consensus pattern (56 bp):
CGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATATAATCAAACT
Found at i:86736811 original size:43 final size:43
Alignment explanation
Indices: 86736763--86736933 Score: 186
Period size: 43 Copynumber: 4.0 Consensus size: 43
86736753 ATTATCGAGA
* * * *
86736763 TGTGATTACCTGTAAGACCATGTCTGGGATATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
* * *
86736806 TGTGATTACATGTAAGACCATGTCTGGGACATTTGCATCGTTAA
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCG-TAT
* * *
86736850 T-CGATTACATGTAAGACCCTATCTGGGACAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
* * *
86736891 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 -TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
86736934 GAGCATAATG
Statistics
Matches: 108, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
41 1 0.01
42 8 0.07
43 96 0.89
44 3 0.03
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
Found at i:86737962 original size:52 final size:52
Alignment explanation
Indices: 86737883--86738006 Score: 194
Period size: 52 Copynumber: 2.4 Consensus size: 52
86737873 GATGATGAAA
* * *
86737883 AAAGGAAAAGAAAGAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
1 AAAGAAAAAG-AAGAAAAAAAAAGCTCTCACGTTGCTCTTGGCCGAATAGAAG
86737936 AAAGAAAAAGAAGAAAAAAAAAGCTCTCACGTTGCTCTTGGCCGAATAGAAG
1 AAAGAAAAAGAAGAAAAAAAAAGCTCTCACGTTGCTCTTGGCCGAATAGAAG
* *
86737988 TAAGAAAAAGAAGGAAAAA
1 AAAGAAAAAGAAGAAAAAA
86738007 GAGCTTTGAG
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
52 57 0.86
53 9 0.14
ACGTcount: A:0.52, C:0.11, G:0.22, T:0.15
Consensus pattern (52 bp):
AAAGAAAAAGAAGAAAAAAAAAGCTCTCACGTTGCTCTTGGCCGAATAGAAG
Found at i:86739457 original size:40 final size:40
Alignment explanation
Indices: 86739234--86739490 Score: 306
Period size: 40 Copynumber: 6.5 Consensus size: 40
86739224 CGGATGATAA
* * *
86739234 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
86739274 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * * *
86739314 CCGGGCTAAGTCGCAAAGGCATTTGTTCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
86739354 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
86739394 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
86739434 CCGGGCTATGTCCCGAAGGCA-TTGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
86739473 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
86739491 TACTTGGCTT
Statistics
Matches: 190, Mismatches: 25, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
38 15 0.08
39 14 0.07
40 161 0.85
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:86742942 original size:48 final size:47
Alignment explanation
Indices: 86742917--86743141 Score: 263
Period size: 48 Copynumber: 4.7 Consensus size: 47
86742907 CTCATATCGG
86742917 TGCCGATGCCATGACCCAGACATGGTCTTACACTAGCACACATATCA
1 TGCCGATGCCATGACCCAGACATGGTCTTACACTAGCACACATATCA
* * *
86742964 TCGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAA
1 T-GCCGATGCCATGACCCAGACATGGTCTTACACTAGCACACATATC-A
* * * *
86743013 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATGA
1 TGCCGATGCCATGACCCAGACATGGTCTTACACTAGCACACATATCA
* * * * *
86743060 -ACACAGATGCCATGTCCCAAACATGGTCTTACACTGGCACATATATCA
1 TGC-C-GATGCCATGACCCAGACATGGTCTTACACTAGCACACATATCA
* * * *
86743108 AGTCGATGCCATGTCCCAAACATGGTCTTACACT
1 TGCCGATGCCATGACCCAGACATGGTCTTACACT
86743142 GGCTCTTATC
Statistics
Matches: 160, Mismatches: 13, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
47 33 0.21
48 125 0.78
49 2 0.01
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (47 bp):
TGCCGATGCCATGACCCAGACATGGTCTTACACTAGCACACATATCA
Found at i:86743169 original size:95 final size:96
Alignment explanation
Indices: 86742920--86743188 Score: 337
Period size: 96 Copynumber: 2.8 Consensus size: 96
86742910 ATATCGGTGC
* * * * * * * * *
86742920 CGATGCCATGACCCAGACATGGTCTTACACTAGCACACATATCATCGCTGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATGAACACAGACGCCATGTCCCAAA
86742985 CATGGTCTTACACTGGCACACATATCAATGT
66 CATGGTCTTACACTGGCACACATATCAATGT
* *
86743016 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATGAACACAGATGCCATGTCCCAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATGAACACAGACGCCATGTCCCAAA
*
86743081 CATGGTCTTACACTGGCACATATATCAA-GT
66 CATGGTCTTACACTGGCACACATATCAATGT
* ** * *
86743111 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTTATCTCGATAC-CA-ACGCCATGTACCA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCACACATAT-GA-ACACAGACGCCATGTCCCA
*
86743174 AATATGGTCTTACAC
64 AACATGGTCTTACAC
86743189 GGTATCTCAT
Statistics
Matches: 155, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
95 64 0.41
96 89 0.57
97 2 0.01
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.25
Consensus pattern (96 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATGAACACAGACGCCATGTCCCAAA
CATGGTCTTACACTGGCACACATATCAATGT
Found at i:86749424 original size:46 final size:46
Alignment explanation
Indices: 86749338--86749509 Score: 152
Period size: 46 Copynumber: 3.7 Consensus size: 46
86749328 AACTCATAGC
* * * *
86749338 CGATGCATGCCCCGGACATGTCTTACACTGGCTTA-T-GTCTCGAGGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGC--ACTCGTCTCGAGGA
* * * *
86749384 CGATGCATGTCCCGGACATGTCTTACACTAGCACTCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCGAGGA
* * * * * *
86749430 CGATGCCATGTCCCAGACATGGTATTACACAAGCTCTCATAAT-GTGGA
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGT-CTCGAGGA
86749478 CGATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
86749510 TCACAATAAC
Statistics
Matches: 104, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 53 0.51
47 27 0.26
48 21 0.20
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCGAGGA
Found at i:86749458 original size:94 final size:92
Alignment explanation
Indices: 86749298--86749509 Score: 209
Period size: 94 Copynumber: 2.3 Consensus size: 92
86749288 GTGCCAATGC
* * ** * *
86749298 CATGCCCCAGACATGGTCTTACACT-G-ACACAACTC-ATAGCCGATGCATGCCCCGGACATGTC
1 CATGTCCCAGACAT-GTCTTACACTAGCACTCGTCTCAAT-GCCGATGCATGCCCCAGACATGTA
** ** *
86749360 TTACACTGGCT-T-ATGTCTCGAGGTCGATG
64 TTACACAAGCTCTCAT-AAT-GAGGACGATG
* *
86749389 CATGTCCCGGACATGTCTTACACTAGCACTCGTCTCAATGCCGATGCCATGTCCCAGACATGGTA
1 CATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCCGATG-CATGCCCCAGACAT-GTA
*
86749454 TTACACAAGCTCTCATAATGTGGACGATG
64 TTACACAAGCTCTCATAATGAGGACGATG
86749483 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
86749510 TCACAATAAC
Statistics
Matches: 99, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
90 10 0.10
91 13 0.13
92 13 0.13
93 14 0.14
94 45 0.45
95 2 0.02
96 2 0.02
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (92 bp):
CATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCCGATGCATGCCCCAGACATGTATT
ACACAAGCTCTCATAATGAGGACGATG
Found at i:86756339 original size:51 final size:51
Alignment explanation
Indices: 86756254--86756453 Score: 294
Period size: 51 Copynumber: 3.9 Consensus size: 51
86756244 ATGGATACAC
* * * * * *
86756254 AGTGGCCTGCACATGGTACCACCCGTGTAG-CCAAAGCTATTTTATTTACAA
1 AGTGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTATATTCACAA
86756305 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAA
1 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAA
*
86756356 AGTGGCCTTCACATAATACCACACTTGTGTCCAAAGCTATTATATTCACAA
1 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAA
* * *
86756407 AATGGCCTTCACATAGTACCACACTTGTGTCCGAAGCTATTTTATTC
1 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
86756454 CTAAGGCTCA
Statistics
Matches: 137, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
50 1 0.01
51 136 0.99
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (51 bp):
AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAA
Found at i:86756514 original size:28 final size:28
Alignment explanation
Indices: 86756477--86756570 Score: 124
Period size: 28 Copynumber: 3.5 Consensus size: 28
86756467 GAAAAATTTC
86756477 TCACTTAGCACAATGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
*
86756505 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
* * *
86756533 TCACTTAG----ATGTCATGGTCTTACT
1 TCACTTAGCACAATGCCATGGACTTATT
86756557 TCACTTAGCACAAT
1 TCACTTAGCACAAT
86756571 CTCATATCCT
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
24 20 0.35
28 37 0.65
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (28 bp):
TCACTTAGCACAATGCCATGGACTTATT
Found at i:86767935 original size:84 final size:84
Alignment explanation
Indices: 86767783--86767944 Score: 211
Period size: 84 Copynumber: 1.9 Consensus size: 84
86767773 ACATGTGTTC
* * **
86767783 TCGTGTAAGACCACGACTGGGACGTTGGCATCGATATGTGATTACGTGTAAGACCATGTGTGGGA
1 TCGTGTAAGACCACGACTGGGACGTTGGCATCGATATGTGATTACATGTAAGACCACGTCCGGGA
*
86767848 CATTGGCATCGTATTTGAT
66 CATTGACATCGTATTTGAT
* * *
86767867 TCGTGTAAGACC-CTATTTGGGACAG-TGGCATCGATATGTGATTGCATGTAAGACCACGTCCGG
1 TCGTGTAAGACCACGA-CTGGGAC-GTTGGCATCGATATGTGATTACATGTAAGACCACGTCCGG
*
86767930 TACATTGACATCGTA
64 GACATTGACATCGTA
86767945 CGATATGCCT
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
83 2 0.03
84 64 0.96
85 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.29
Consensus pattern (84 bp):
TCGTGTAAGACCACGACTGGGACGTTGGCATCGATATGTGATTACATGTAAGACCACGTCCGGGA
CATTGACATCGTATTTGAT
Found at i:86767942 original size:43 final size:42
Alignment explanation
Indices: 86767783--86767942 Score: 171
Period size: 43 Copynumber: 3.8 Consensus size: 42
86767773 ACATGTGTTC
* *
86767783 TCGTGTAAGACCACGACTGGGACGTTGGCATCGATATGTGAT
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGAT
* * *
86767825 TACGTGTAAGACCATGTGTGGGACATTGGCATCG-TATTTGAT
1 T-CGTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGAT
* * *
86767867 TCGTGTAAGACC-CTATTTGGGACAGTGGCATCGATATGTGAT
1 TCGTGTAAGACCAC-GTCTGGGACATTGGCATCGATATGTGAT
* * * *
86767909 TGCATGTAAGACCACGTCCGGTACATTGACATCG
1 T-CGTGTAAGACCACGTCTGGGACATTGGCATCG
86767943 TACGATATGC
Statistics
Matches: 96, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
41 27 0.28
42 17 0.18
43 51 0.53
44 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (42 bp):
TCGTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGAT
Found at i:86770544 original size:51 final size:50
Alignment explanation
Indices: 86770468--86770615 Score: 199
Period size: 51 Copynumber: 2.9 Consensus size: 50
86770458 CTAATACATG
* *
86770468 GTGGCCTTCACAAAGTAGCAAACTTGTGTTAAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTAGCACACTTGTG-TAAAAGCTATTTTATTCACAAA
*
86770519 GTGGCCTTCACATAGTAGCACACTTGTG-AACAACGCTATTATATTCACAAA
1 GTGGCCTTCACATAGTAGCACACTTGTGTAA-AA-GCTATTTTATTCACAAA
* * *
86770570 GTGGCCTTCACATAGTACCACATTTGTGTCCAAAGCTATTTTATTC
1 GTGGCCTTCACATAGTAGCACACTTGTGT-AAAAGCTATTTTATTC
86770616 CTAAGGTTCA
Statistics
Matches: 86, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
49 2 0.02
50 2 0.02
51 79 0.92
52 2 0.02
53 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.32
Consensus pattern (50 bp):
GTGGCCTTCACATAGTAGCACACTTGTGTAAAAGCTATTTTATTCACAAA
Found at i:86770695 original size:52 final size:52
Alignment explanation
Indices: 86770639--86770757 Score: 184
Period size: 52 Copynumber: 2.3 Consensus size: 52
86770629 GGGAAATTTC
*
86770639 TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATAGACTCATT
1 TCACTTAGCACAATGCCATGGACTCATTTCACTTAGATGCCATAGACTCATT
* * * * *
86770691 TCACTCAGCACATTGCCATGGACTCATTTCACTTAGATGCCATGGTCTTATT
1 TCACTTAGCACAATGCCATGGACTCATTTCACTTAGATGCCATAGACTCATT
86770743 TCACTTAGCACAATG
1 TCACTTAGCACAATG
86770758 TCATATCCTA
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 59 1.00
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (52 bp):
TCACTTAGCACAATGCCATGGACTCATTTCACTTAGATGCCATAGACTCATT
Found at i:86770716 original size:28 final size:27
Alignment explanation
Indices: 86770639--86770754 Score: 127
Period size: 24 Copynumber: 4.4 Consensus size: 27
86770629 GGGAAATTTC
*
86770639 TCACTTAGCACAATGCCATGGACTTATT
1 TCACTTAGCAC-ATGCCATGGACTCATT
*
86770667 TCACTTAG---ATGCCATAGACTCATT
1 TCACTTAGCACATGCCATGGACTCATT
*
86770691 TCACTCAGCACATTGCCATGGACTCATT
1 TCACTTAGCACA-TGCCATGGACTCATT
* *
86770719 TCACTTAG---ATGCCATGGTCTTATT
1 TCACTTAGCACATGCCATGGACTCATT
86770743 TCACTTAGCACA
1 TCACTTAGCACA
86770755 ATGTCATATC
Statistics
Matches: 74, Mismatches: 7, Indels: 15
0.77 0.07 0.16
Matches are distributed among these distances:
24 42 0.57
25 1 0.01
27 2 0.03
28 29 0.39
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.33
Consensus pattern (27 bp):
TCACTTAGCACATGCCATGGACTCATT
Found at i:86772080 original size:118 final size:118
Alignment explanation
Indices: 86771869--86772104 Score: 429
Period size: 118 Copynumber: 2.0 Consensus size: 118
86771859 TAAGGATAAA
86771869 ATTTTGAGCATGATTTTACTCATGATTTTCGACATTCATCTCTTTGATCCTTCTTTGATTTGTTT
1 ATTTTGAGCATGATTTTACTCATGATTTTCGACATTCATCTCTTTGATCCTTCTTTGATTTGTTT
*
86771934 GTCTTCTCCTTTGTTTCAAAGCATGTTGTAAAGCAGGATCTATGGAGAGTAAG
66 GTCTTCTCCTTTGTTTCAAAGCACGTTGTAAAGCAGGATCTATGGAGAGTAAG
*
86771987 ATTTTGAGCATGATTTTACTCTTGATTTTTC-ACATTCATCTCTTTGATCCTTCTTTGATTTGTT
1 ATTTTGAGCATGATTTTACTCATGA-TTTTCGACATTCATCTCTTTGATCCTTCTTTGATTTGTT
*
86772051 TGTCTTCTCCTTTGTTTCAAAGCACGTTGTAAAGCAGGATCTATGGAGGGTAAG
65 TGTCTTCTCCTTTGTTTCAAAGCACGTTGTAAAGCAGGATCTATGGAGAGTAAG
86772105 TTGATAATTC
Statistics
Matches: 114, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
118 109 0.96
119 5 0.04
ACGTcount: A:0.21, C:0.17, G:0.18, T:0.44
Consensus pattern (118 bp):
ATTTTGAGCATGATTTTACTCATGATTTTCGACATTCATCTCTTTGATCCTTCTTTGATTTGTTT
GTCTTCTCCTTTGTTTCAAAGCACGTTGTAAAGCAGGATCTATGGAGAGTAAG
Found at i:86773323 original size:40 final size:39
Alignment explanation
Indices: 86773104--86773356 Score: 313
Period size: 40 Copynumber: 6.5 Consensus size: 39
86773094 CGGATGATAA
*
86773104 CCGGGCTAAGTCCCGAAGGCATT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTGTGCG--AGTTACTA-TAT
86773144 CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTA-T-TACT
1 CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATA-T
* *
86773182 CCGGGCTAAGTCCCGAAGGCATTGTGC-AGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATAT
*
86773220 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAT
*
86773260 CTGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTACTATAT
* *
86773300 CCGGGCTATGTCCCGAAGGCATTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTA-CTATAT
* *
86773339 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
86773357 TACTTGGCTT
Statistics
Matches: 191, Mismatches: 13, Indels: 20
0.85 0.06 0.09
Matches are distributed among these distances:
36 1 0.01
37 5 0.03
38 67 0.35
39 27 0.14
40 87 0.46
41 4 0.02
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATAT
Found at i:86781316 original size:40 final size:39
Alignment explanation
Indices: 86781261--86781557 Score: 323
Period size: 40 Copynumber: 7.5 Consensus size: 39
86781251 CGGACGATAA
* * *
86781261 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* *
86781301 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* * * *
86781341 CCGGGCTAAGTCTCGAAGG-ATCCTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCAT-TTGTGCGAGTTACTA-TT
* * *
86781381 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
*
86781421 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
*
86781461 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
* *
86781501 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAT-T
* *
86781540 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
86781558 TACTTGGCTT
Statistics
Matches: 229, Mismatches: 24, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
38 15 0.07
39 17 0.07
40 195 0.85
41 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATT
Found at i:86781478 original size:120 final size:120
Alignment explanation
Indices: 86781261--86781523 Score: 368
Period size: 120 Copynumber: 2.2 Consensus size: 120
86781251 CGGACGATAA
* **
86781261 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCAAGTGACTACATCCGGGCTAAGTCCCGAAGGCATTTG
* * * * *
86781326 TGCGAGTTATTACGTCCGGGCTAAGTCTCGAAGG-ATCCT-GTGCGAGTTATTACAT
66 TGCGAGCTACTACATCCGGGCTAAGTCCCGAAGGCAT--TGGTGCGAGTTACTACAT
* * *
86781381 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCAAGTGACTACATCCGGGCTAAGTCCCGAAGGCATTTG
* *
86781446 TGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
66 TGCGAGCTACTACATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTACAT
*
86781501 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
86781524 GAGCGAGTAG
Statistics
Matches: 127, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
119 1 0.01
120 124 0.98
121 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.26
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCAAGTGACTACATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGCTACTACATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTACAT
Found at i:86784508 original size:16 final size:16
Alignment explanation
Indices: 86784487--86784517 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86784477 ATATATTTTC
*
86784487 ATTTGCATCATATATA
1 ATTTGCATCAAATATA
86784503 ATTTGCATCAAATAT
1 ATTTGCATCAAATAT
86784518 TAAATAACCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.13, G:0.06, T:0.42
Consensus pattern (16 bp):
ATTTGCATCAAATATA
Found at i:86795724 original size:41 final size:43
Alignment explanation
Indices: 86795623--86795756 Score: 148
Period size: 43 Copynumber: 3.2 Consensus size: 43
86795613 AAGTCATACA
* * **
86795623 ATGCCAACGTCCTAGAC-GTGGTCTTACATGCAATCTCATATCG
1 ATGCCAATGTCCTAGACAG-GGTCTTACACGCAATCAAATATCG
* * *
86795666 ATGCCATTATCCCAGACAGGGTCTTACACG-AATCAAATA-CG
1 ATGCCAATGTCCTAGACAGGGTCTTACACGCAATCAAATATCG
* * *
86795707 ATGCCAATGTCCTAGACATGGTCTTACACGTAATAAAATATCG
1 ATGCCAATGTCCTAGACAGGGTCTTACACGCAATCAAATATCG
86795750 ATGCCAA
1 ATGCCAA
86795757 CGTCTCAGAC
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
41 28 0.37
42 15 0.20
43 32 0.42
44 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCTAGACAGGGTCTTACACGCAATCAAATATCG
Found at i:86795774 original size:43 final size:41
Alignment explanation
Indices: 86795618--86795777 Score: 115
Period size: 43 Copynumber: 3.8 Consensus size: 41
86795608 CACACAAGTC
* * * * ***
86795618 ATACAATGCCAACGTCCTAGACGTGGTCTTACATGCAATCTC
1 ATACGATGCCAACGTCCTAGACATAGTCTTACACG-AATAAA
*** * ** *
86795660 ATATCGATGCCATTATCCCAGACAGGGTCTTACACGAATCAA
1 ATA-CGATGCCAACGTCCTAGACATAGTCTTACACGAATAAA
* *
86795702 ATACGATGCCAATGTCCTAGACATGGTCTTACACGTAATAAA
1 ATACGATGCCAACGTCCTAGACATAGTCTTACACG-AATAAA
*
86795744 ATATCGATGCCAACGT-CTCAGACGTAGTCTTACA
1 ATA-CGATGCCAACGTCCT-AGACATAGTCTTACA
86795778 TGAGAACACA
Statistics
Matches: 96, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
41 28 0.29
42 20 0.21
43 48 0.50
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (41 bp):
ATACGATGCCAACGTCCTAGACATAGTCTTACACGAATAAA
Found at i:86795774 original size:84 final size:84
Alignment explanation
Indices: 86795618--86795777 Score: 187
Period size: 84 Copynumber: 1.9 Consensus size: 84
86795608 CACACAAGTC
* * *** **
86795618 ATACAATGCCAACGTCCTAGACGTGGTCTTACATGCAATCTCATATCGATGCCATTATCCCAGAC
1 ATACAATGCCAACGTCCTAGACATGGTCTTACACGCAATAAAATATCGATGCCAACATCCCAGAC
*
86795683 AGGGTCTTACACGAATCAA
66 AGAGTCTTACACGAATCAA
* * * * *
86795702 ATACGATGCCAATGTCCTAGACATGGTCTTACACGTAATAAAATATCGATGCCAACGTCTCAGAC
1 ATACAATGCCAACGTCCTAGACATGGTCTTACACGCAATAAAATATCGATGCCAACATCCCAGAC
86795767 -GTAGTCTTACA
66 AG-AGTCTTACA
86795778 TGAGAACACA
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
83 1 0.02
84 61 0.98
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (84 bp):
ATACAATGCCAACGTCCTAGACATGGTCTTACACGCAATAAAATATCGATGCCAACATCCCAGAC
AGAGTCTTACACGAATCAA
Found at i:86796326 original size:28 final size:27
Alignment explanation
Indices: 86796295--86796347 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
86796285 TACATTTCAT
*
86796295 TTATTTC-ACATTTTAGTCCCTCAATTTA
1 TTATTTCTACAATTTA-TCCCT-AATTTA
86796323 TTATTTCTACAATTTATCCCTAATT
1 TTATTTCTACAATTTATCCCTAATT
86796348 ATTGAATATC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 4 0.17
28 12 0.52
29 7 0.30
ACGTcount: A:0.26, C:0.21, G:0.02, T:0.51
Consensus pattern (27 bp):
TTATTTCTACAATTTATCCCTAATTTA
Found at i:86796619 original size:25 final size:25
Alignment explanation
Indices: 86796585--86796635 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
86796575 AATGGCCGAA
86796585 TACCCTAGGCTTTATTTCTTTTCTT
1 TACCCTAGGCTTTATTTCTTTTCTT
86796610 TACCCTAGGCTTTATTTCTTTTCTT
1 TACCCTAGGCTTTATTTCTTTTCTT
86796635 T
1 T
86796636 CTTTTTCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.12, C:0.24, G:0.08, T:0.57
Consensus pattern (25 bp):
TACCCTAGGCTTTATTTCTTTTCTT
Found at i:86799186 original size:26 final size:26
Alignment explanation
Indices: 86799157--86799219 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
86799147 TTAGAGATTA
* * *
86799157 ATGAAACATGACAGGTGTGTGAGTTG
1 ATGAAAAATGACAAGTGTGTCAGTTG
* *
86799183 ATGAAAGATGAGAAGTGTGTCAGTTG
1 ATGAAAAATGACAAGTGTGTCAGTTG
86799209 ATGAAAAATGA
1 ATGAAAAATGA
86799220 AGAGGTGATC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.38, C:0.05, G:0.32, T:0.25
Consensus pattern (26 bp):
ATGAAAAATGACAAGTGTGTCAGTTG
Found at i:86801842 original size:17 final size:17
Alignment explanation
Indices: 86801820--86801854 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
86801810 CTAAAGTAGA
86801820 AATTGAATATGAAATTG
1 AATTGAATATGAAATTG
86801837 AATTGAATATGAAATTG
1 AATTGAATATGAAATTG
86801854 A
1 A
86801855 CTATCTACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.17, T:0.34
Consensus pattern (17 bp):
AATTGAATATGAAATTG
Found at i:86804007 original size:519 final size:516
Alignment explanation
Indices: 86803106--86804141 Score: 1964
Period size: 519 Copynumber: 2.0 Consensus size: 516
86803096 ACTAGGGCTC
* *
86803106 TAAAATTATATGAAAGGATATATATATCAAAAATAAGTGGTAAAATAAAATAAATATATATAAAT
1 TAAAATTATAGGAAAGGATATATATATAAAAAATAAGTGGTAAAATAAAATAAATATATATAAAT
86803171 TTTAAGGTAAATAAATATATACAAAAGACAGCAATAATATTGCGAAATAAAAAGAAATAAAGAAT
66 TTTAAGGTAAATAAATATATACAAAAGACAGCAATAATATTGCGAAATAAAAAGAAATAAAGAAT
*
86803236 ACTAAAATAATAAACTAAAAGATGAACAAAGCAAATAAAACAAAACAAAGATAACAAATAATATT
131 ACTAAAATAATAAAATAAAAGATGAACAAAGCAAATAAAACAAAACAAAGATAACAAATAATATT
* *
86803301 AATGAAACAAAAAGGGAAATATAATAATAGTAAAGATAAAGTCTTGATTTCAGAAGTTCATTAAA
196 AATGAAACAAAAAGGGAAATATAATAATAGTAAAGATAAACTCTTGATTTCAAAAGTTCATTAAA
86803366 AAATGAAATAAACAGACACAAAACGAAATAAAATAAAATAATTGTAAAAGACGAAATTACTTAAG
261 AAATGAAATAAACAGACACAAAACGAAATAAAATAAAATAATTGTAAAAGACGAAATTACTTAAG
86803431 TAAAGGACCGAATTGAAAATAAAATGGAATTTAAAGTCTAGAATCTGAATAATGAACAAGCATAA
326 TAAAGGACCGAATTGAAAATAAAATGGAATTTAAAGTCTAGAATCTGAATAATGAACAAGCATAA
* *
86803496 GGATCCAGATGGAATGCGTATGAAGATAGGAAGTGTAACAGCCCAAACCCGGCCTGGAAGTTTGG
391 GGATCCAGATGGAATGCGTATGAAGATAGGAAGTGTAACACCCCAAACCCAGCCTGGAAGTTTGG
* *
86803561 CTCGAATCTGGCATGTCACATTGAAGTGTTTTTCGAAAATCATGTTTCCATTAAAAACCCT
456 CTCAAATCTGGCATGTCACATTGAAGTGTTTTTCGAAAACCATGTTTCCATTAAAAACCCT
86803622 TAAAATTATAGGAAAGGATATATATATATAAAAAATAAGTGGTAAAATAAAATAAATATATATAA
1 TAAAATTATAGGAAAGG--ATATATATATAAAAAATAAGTGGTAAAATAAAATAAATATATATAA
86803687 ATTTTAAGGTAAATAAATATATACAAAAGACAGCAATAATATTGCGAAATAAAAAGAAATAAAGA
64 ATTTTAAGGTAAATAAATATATACAAAAGACAGCAATAATATTGCGAAATAAAAAGAAATAAAGA
86803752 ATACTAAAATAATAAAATAAAAGATGAACAAAGCAAATAAAACAAAACAAAGATAACAAATAATA
129 ATACTAAAATAATAAAATAAAAGATGAACAAAGCAAATAAAACAAAACAAAGATAACAAATAATA
86803817 TTAATGAAACAAAAAAGGGAAATATAATAATAGTAAAGATAAACTCTTGATTTCAAAAGTTCATT
194 TTAATGAAAC-AAAAAGGGAAATATAATAATAGTAAAGATAAACTCTTGATTTCAAAAGTTCATT
86803882 AAAAAATGAAATAAACAGACACAAAACGAAATAAAATAAAATAATTGTAAAAGACGAAATTACTT
258 AAAAAATGAAATAAACAGACACAAAACGAAATAAAATAAAATAATTGTAAAAGACGAAATTACTT
86803947 AAGTAAAGGACCGAATTGAAAATAAAATGGAATTTAAAGTCTAGAATCTGAATAATGAACAAGCA
323 AAGTAAAGGACCGAATTGAAAATAAAATGGAATTTAAAGTCTAGAATCTGAATAATGAACAAGCA
86804012 TAAGGATCCAGATGGAATGCGTATGAAGATAGGAAGTGTAACACCCCAAACCCAGCCTGGAAGTT
388 TAAGGATCCAGATGGAATGCGTATGAAGATAGGAAGTGTAACACCCCAAACCCAGCCTGGAAGTT
86804077 TGGCTCAAATCTGGCATGTCACATTGAAGTGTTTTTCGAAAACCATGTTTCCATTAAAAACCCT
453 TGGCTCAAATCTGGCATGTCACATTGAAGTGTTTTTCGAAAACCATGTTTCCATTAAAAACCCT
86804141 T
1 T
86804142 CTTAATAATT
Statistics
Matches: 508, Mismatches: 9, Indels: 3
0.98 0.02 0.01
Matches are distributed among these distances:
516 16 0.03
518 184 0.36
519 308 0.61
ACGTcount: A:0.52, C:0.10, G:0.14, T:0.24
Consensus pattern (516 bp):
TAAAATTATAGGAAAGGATATATATATAAAAAATAAGTGGTAAAATAAAATAAATATATATAAAT
TTTAAGGTAAATAAATATATACAAAAGACAGCAATAATATTGCGAAATAAAAAGAAATAAAGAAT
ACTAAAATAATAAAATAAAAGATGAACAAAGCAAATAAAACAAAACAAAGATAACAAATAATATT
AATGAAACAAAAAGGGAAATATAATAATAGTAAAGATAAACTCTTGATTTCAAAAGTTCATTAAA
AAATGAAATAAACAGACACAAAACGAAATAAAATAAAATAATTGTAAAAGACGAAATTACTTAAG
TAAAGGACCGAATTGAAAATAAAATGGAATTTAAAGTCTAGAATCTGAATAATGAACAAGCATAA
GGATCCAGATGGAATGCGTATGAAGATAGGAAGTGTAACACCCCAAACCCAGCCTGGAAGTTTGG
CTCAAATCTGGCATGTCACATTGAAGTGTTTTTCGAAAACCATGTTTCCATTAAAAACCCT
Found at i:86804709 original size:6 final size:6
Alignment explanation
Indices: 86804691--86804772 Score: 62
Period size: 6 Copynumber: 13.3 Consensus size: 6
86804681 AAGAAACATT
* *
86804691 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGGTA A-CAAA ATCAAA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
* *
86804740 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
86804773 GTGAATGCAA
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
5 5 0.08
6 47 0.76
7 7 0.11
8 3 0.05
ACGTcount: A:0.51, C:0.16, G:0.15, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:86804740 original size:31 final size:31
Alignment explanation
Indices: 86804702--86804772 Score: 124
Period size: 31 Copynumber: 2.3 Consensus size: 31
86804692 TCAGAACTAG
86804702 AATCAGAATCAGAATCAGGTAACAAAATCAA
1 AATCAGAATCAGAATCAGGTAACAAAATCAA
* *
86804733 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGAATCAGGTAACAAAATCAA
86804764 AATCAGAAT
1 AATCAGAAT
86804773 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.52, C:0.15, G:0.14, T:0.18
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGGTAACAAAATCAA
Found at i:86804945 original size:27 final size:27
Alignment explanation
Indices: 86804915--86804978 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
86804905 AGTAAGTTGA
* *
86804915 GGCAAAGCCTCCAGAAT-AGATATTTGT
1 GGCAAAGCCACCAGAATCAGATA-ATGT
*
86804942 GGCATAGCCACCAGAATCAGATAATGT
1 GGCAAAGCCACCAGAATCAGATAATGT
86804969 GGCAAAGCCA
1 GGCAAAGCCA
86804979 TTTAACAGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 27 0.84
28 5 0.16
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (27 bp):
GGCAAAGCCACCAGAATCAGATAATGT
Found at i:86805185 original size:22 final size:22
Alignment explanation
Indices: 86805137--86805195 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
86805127 GTAAATACAT
*
86805137 TTGGCATGAAGCCATAGTCAAG
1 TTGGCACGAAGCCATAGTCAAG
* * * *
86805159 ATGGCACGAAGCCATATTTAGG
1 TTGGCACGAAGCCATAGTCAAG
*
86805181 TTGGCACAAAGCCAT
1 TTGGCACGAAGCCAT
86805196 CGATAACGTG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACGAAGCCATAGTCAAG
Found at i:86806551 original size:27 final size:27
Alignment explanation
Indices: 86806518--86806914 Score: 221
Period size: 27 Copynumber: 14.7 Consensus size: 27
86806508 CTTCAAATTG
*
86806518 TAAAATTACCAAAGTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* *** *
86806545 TAGAATTACCATTTTACCCTTGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* ****
86806572 TAGAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * ***** *
86806599 TAGAACTACTGTTTTACCCTTGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * *****
86806626 CAGAATTACTGTGTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * *
86806653 CAAAATTACTAAAATACCCTTGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* *
86806680 CAAAATTACCAAAATACCCTCGA-TCA
1 TAAAATTACCAAAATACCCTCGATTTA
* * *
86806706 GTAAAATTACCAAAATACCCTAG-TCTG
1 -TAAAATTACCAAAATACCCTCGATTTA
* * * * *
86806733 TAAAATTGCTAAAATACCCTTGGTTTG
1 TAAAATTACCAAAATACCCTCGATTTA
* * *
86806760 TAAAATTACCGAAATACCCTCAATTTG
1 TAAAATTACCAAAATACCCTCGATTTA
* *
86806787 TAAAATTACCAAAATACCCT-TAGTTTG
1 TAAAATTACCAAAATACCCTCGA-TTTA
* *
86806814 TAAAATTACCAAAATACCACT-GGTTTG
1 TAAAATTACCAAAATACC-CTCGATTTA
* ** * * *
86806841 TGAAATTACCGGAATACCCGCAATTTG
1 TAAAATTACCAAAATACCCTCGATTTA
86806868 TAAAATTACCAAAATACCC-CTGATTTA
1 TAAAATTACCAAAATACCCTC-GATTTA
* *
86806895 CAAAGTTA-CAGAAATACCCT
1 TAAAATTACCA-AAATACCCT
86806915 TAACTTTCTA
Statistics
Matches: 306, Mismatches: 55, Indels: 17
0.81 0.15 0.04
Matches are distributed among these distances:
26 26 0.08
27 278 0.91
28 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGATTTA
Found at i:86806698 original size:54 final size:54
Alignment explanation
Indices: 86806519--86807000 Score: 245
Period size: 54 Copynumber: 8.9 Consensus size: 54
86806509 TTCAAATTGT
* * *** *
86806519 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTTTACCCTTGATTTAT
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTAC
* **** * * *****
86806573 AGAATTACCGTTTTACCCTCGATTTATAGAACTACTGTTTTACCCTTGATTTAC
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTAC
* ***** * *
86806627 AGAATTACTGTGTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTAC
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTAC
* * * **
86806681 AAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCAAAATACCCTAG-TCTGT
1 AAAATTACCAAAATACCCTCGATTTA-TAAAATTACCAAAATACCCTTGATTTAC
* * * * * * ** **
86806734 AAAATTGCTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTAC
* * * **
86806788 AAAATTACCAAAATACCCT-TAGTTTGTAAAATTACCAAAATACCAC-TGGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTATAAAATTACCAAAATACC-CTTGATTTAC
* ** * * * *
86806842 GAAATTACCGGAATACCCGCAATTTGTAAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTAC
* ** * *** * *
86806896 AAAGTTA-CAGAAATACCCTTAACTTTCTAAAAATTATGGAAATACCATTGGTTTAAC
1 AAAATTACCA-AAATACCCTCGA-TTTAT-AAAATTACCAAAATACCCTTGATTT-AC
* * * * * * *
86806953 AAAATTACTAAAATACCCTTGGTTTGTAGATTTACCAAAACACCCTTG
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTG
86807001 TAGGATGAAA
Statistics
Matches: 334, Mismatches: 82, Indels: 23
0.76 0.19 0.05
Matches are distributed among these distances:
53 43 0.13
54 229 0.69
55 20 0.06
56 23 0.07
57 18 0.05
58 1 0.00
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (54 bp):
AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTAC
Found at i:86806849 original size:81 final size:80
Alignment explanation
Indices: 86806654--86806886 Score: 315
Period size: 81 Copynumber: 2.9 Consensus size: 80
86806644 CTCGATTTAC
* * ** * * **
86806654 AAAATTACTAAAATACCCTTGATTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
86806719 AATACCCTAGTCTGT
66 AATACCCTAGTCTGT
* *
86806734 AAAATTGCTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
*
86806799 AATACCCTTAGTTTGT
66 AATACCC-TAGTCTGT
* * *
86806815 AAAATTACCAAAATACCAC-TGGTTTGTGAAATTACCGGAATACCCGCAATTTGTAAAATTACCA
1 AAAATTACCAAAATACC-CTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
86806879 AAATACCC
65 AAATACCC
86806887 CTGATTTACA
Statistics
Matches: 137, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
80 64 0.47
81 72 0.53
82 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
AATACCCTAGTCTGT
Found at i:86806910 original size:81 final size:81
Alignment explanation
Indices: 86806654--86806915 Score: 293
Period size: 81 Copynumber: 3.2 Consensus size: 81
86806644 CTCGATTTAC
* * ** * * * **
86806654 AAAATTACTAAAATACCCTTGATTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCGCAATTTGTAAAATTACCAA
86806719 AATA-CCCTAG-TCTGT
66 AATACCCCTAGAT-TGT
* * *
86806734 AAAATTGCTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCGCAATTTGTAAAATTACCAA
* *
86806799 AATACCCTTAGTTTGT
66 AATACCCCTAGATTGT
* *
86806815 AAAATTACCAAAATACCAC-TGGTTTGTGAAATTACCGGAATACCCGCAATTTGTAAAATTACCA
1 AAAATTACCAAAATACC-CTTGGTTTGTAAAATTACCGAAATACCCGCAATTTGTAAAATTACCA
86806879 AAATACCCCT-GATT-T
65 AAATACCCCTAGATTGT
86806894 ACAAAGTTA-CAGAAATACCCTT
1 A-AAA-TTACCA-AAATACCCTT
86806916 AACTTTCTAA
Statistics
Matches: 159, Mismatches: 16, Indels: 13
0.85 0.09 0.07
Matches are distributed among these distances:
79 2 0.01
80 70 0.44
81 85 0.53
82 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCGCAATTTGTAAAATTACCAA
AATACCCCTAGATTGT
Found at i:86807061 original size:27 final size:28
Alignment explanation
Indices: 86807017--86807118 Score: 104
Period size: 27 Copynumber: 3.8 Consensus size: 28
86807007 GAAATGACTA
86807017 AAATACCCCTATTA-GGTAAAAAGACCGT
1 AAATACCCCTA-TAGGGTAAAAAGACCGT
*
86807045 AAAT-CCCCTATAGGGTAAAGAGACCGT
1 AAATACCCCTATAGGGTAAAAAGACCGT
* * **
86807072 AAA-GCCCCTGTAGGGTAAAGTGACCGT
1 AAATACCCCTATAGGGTAAAAAGACCGT
* *
86807099 -AATACCCCTGTATGGTAAAA
1 AAATACCCCTATAGGGTAAAA
86807119 TGACGAATGT
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
26 4 0.06
27 57 0.88
28 4 0.06
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (28 bp):
AAATACCCCTATAGGGTAAAAAGACCGT
Found at i:86807950 original size:26 final size:26
Alignment explanation
Indices: 86807921--86808025 Score: 133
Period size: 26 Copynumber: 4.1 Consensus size: 26
86807911 GAGGAAGTGC
86807921 AAAAGGGCTTATGCCCCAGTTTATTA
1 AAAAGGGCTTATGCCCCAGTTTATTA
* * ***
86807947 AAAATGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTA
*
86807973 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTA
*
86807999 AAAGGGGCTT-TGCCCCA-TTTATTA
1 AAAAGGGCTTATGCCCCAGTTTATTA
86808023 AAA
1 AAA
86808026 GAGGCAAGGC
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
24 9 0.13
25 7 0.10
26 52 0.76
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTA
Found at i:86809080 original size:27 final size:27
Alignment explanation
Indices: 86809046--86809483 Score: 486
Period size: 27 Copynumber: 16.2 Consensus size: 27
86809036 GGTTATCTCG
86809046 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
86809073 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
86809100 GTAATTTTATCCTACGGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
** *
86809127 AAAATTCTACCCTACAGGGCTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
**
86809153 GATAATTCTACATTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * *
86809181 ATAATTCTACCCTACACGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
86809208 GTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * **
86809235 GTCATTTTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
86809262 GTAATTCTACCATACAGGAGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
86809289 ATAATTCTACACTACAGGGATATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
86809316 GTAATTCTACCTTACAGGAGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
86809343 GTAATTCTACTCTAGAAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
86809369 GATAATTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
* **
86809397 GTAATTCTACCATACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
86809424 GTAATTCTACCCTATAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
86809450 GATAATTCTACCCTATAGGGTTGTTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
86809478 GTAATT
1 GTAATT
86809484 TTGTAAATCG
Statistics
Matches: 337, Mismatches: 68, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
26 2 0.01
27 333 0.99
28 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:86809084 original size:54 final size:54
Alignment explanation
Indices: 86809043--86809483 Score: 560
Period size: 54 Copynumber: 8.2 Consensus size: 54
86809033 CGAGGTTATC
* *
86809043 TCGGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATT
* * * ** *
86809097 TCGGTAATTTTATCCTACGGGGGTATTTCAAAAATTCTACCCTACAGGGCTATT
1 TCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATT
* ** * *
86809151 TCGATAATTCTACATTACAGGGGTATTTCAATAATTCTACCCTACACGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATT
* * *
86809205 TCGGTAATTCTACCTTACAGGGGTATTTCAGTCATTTTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATT
* * * * * *
86809259 TTGGTAATTCTACCATACAGGAGTATTTCAATAATTCTACACTACAGGGATATT
1 TCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATT
* * * * *
86809313 TCGGTAATTCTACCTTACAGGAGTATTTCAGTAATTCTACTCTAGAAGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATT
* *
86809367 TCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCATACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATT
* * * * *
86809421 TTGGTAATTCTACCCTATAGGGGTATTTC-GATAATTCTACCCTATAGGGTTGTT
1 TCGGTAATTCTACCCTACAGGGGTATTTCAG-TAATTCTACCCTACAGGGGTATT
86809475 TCGGTAATT
1 TCGGTAATT
86809484 TTGTAAATCG
Statistics
Matches: 333, Mismatches: 53, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
53 1 0.00
54 332 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (54 bp):
TCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATT
Found at i:86809536 original size:27 final size:26
Alignment explanation
Indices: 86809477--86809807 Score: 209
Period size: 27 Copynumber: 12.3 Consensus size: 26
86809467 GGGTTGTTTC
* ***
86809477 GGTAATTTTGTAAATCGAGGGTAAAAT
1 GGTAATTTTATAAATCG-GGGTATTTT
* * *
86809504 GTTAATTTTGTAAATCAGGGGTACTTT
1 GGTAATTTTATAAATC-GGGGTATTTT
* * *
86809531 GGTAATTTTACAAGTCGAAGGTATTTT
1 GGTAATTTTATAAATCG-GGGTATTTT
* * *
86809558 AGTAATCTTACAAATCGGGGTATTTT
1 GGTAATTTTATAAATCGGGGTATTTT
* * * *
86809584 GGTGATTTTATAAACCAAGGGTATTCT
1 GGTAATTTTATAAATC-GGGGTATTTT
* * *
86809611 AGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTATAAATC-GGGGTATTTT
* * *
86809638 GGTAATTTTGTAAACCAAGGGTATTTT
1 GGTAATTTTATAAATC-GGGGTATTTT
* * *
86809665 GGTAATTTTACAAACCAAGGGTATTTT
1 GGTAATTTTATAAATC-GGGGTATTTT
* ** *
86809692 GGTGATTTTATAAACTAAGGGTATTCT
1 GGTAATTTTATAAA-TCGGGGTATTTT
* *
86809719 AGTAATTTTGCT-AATCGAGGGTATTTT
1 GGTAATTTT-ATAAATCG-GGGTATTTT
*
86809746 GGTAATTTT-TCTAATCGAGGGTATTTT
1 GGTAATTTTAT-AAATCG-GGGTATTTT
*
86809773 GGTAATTTTGCT-AATCGAGGGTATTTT
1 GGTAATTTT-ATAAATCG-GGGTATTTT
86809800 GGTAATTT
1 GGTAATTT
86809808 AGTAAACTAA
Statistics
Matches: 250, Mismatches: 44, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
25 1 0.00
26 21 0.08
27 225 0.90
28 2 0.01
29 1 0.00
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (26 bp):
GGTAATTTTATAAATCGGGGTATTTT
Found at i:86809563 original size:81 final size:80
Alignment explanation
Indices: 86809478--86809813 Score: 300
Period size: 81 Copynumber: 4.2 Consensus size: 80
86809468 GGTTGTTTCG
*** * * * * *
86809478 GTAATTTTGTAAATCGAGGGTAAAATGTTAATTTTGTAAATCAGGGGTACTTTGGTAATTTTACA
1 GTAATTTTGTAAATCGAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACA
*
86809543 AGTCGAAGGTATTTTA
66 A-ACGAAGGTATTTTA
* ** * * *
86809559 GTAATCTTACAAATCG-GGGTATTTTGGTGATTTTATAAACCAAGGGTATTCTAGTAATTTTACA
1 GTAATTTTGTAAATCGAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACA
* * *
86809623 AACCAGGGGTATTTTG
66 AACGA-AGGTATTTTA
* * * * *
86809639 GTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTGATTTTATA
1 GTAATTTTGTAAATCGAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACA
* *
86809704 AACTAAGGGTATTCTA
66 AACGAA-GGTATTTTA
* * * *
86809720 GTAATTTTGCT-AATCGAGGGTATTTTGGTAATTTT-TCTAATCGAGGGTATTTTGGTAATTTTG
1 GTAATTTTG-TAAATCGAGGGTATTTTGGTAATTTTAT-AAACCAAGGGTATTTTGGTAATTTTA
* * *
86809783 CTAATCGAGGGTATTTTG
64 C-AAACGAAGGTATTTTA
*
86809801 GTAATTTAGTAAA
1 GTAATTTTGTAAA
86809814 CTAAAGTATT
Statistics
Matches: 200, Mismatches: 48, Indels: 14
0.76 0.18 0.05
Matches are distributed among these distances:
79 2 0.01
80 58 0.29
81 135 0.68
82 5 0.03
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (80 bp):
GTAATTTTGTAAATCGAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACA
AACGAAGGTATTTTA
Found at i:86809652 original size:54 final size:53
Alignment explanation
Indices: 86809506--86809807 Score: 302
Period size: 54 Copynumber: 5.6 Consensus size: 53
86809496 GGTAAAATGT
** * * * *
86809506 TAATTTTGTAAATCAGGGGTACTTTGGTAATTTTACAAGTCGAA-GGTATTTTAG
1 TAATTTTACAAATC-GGGGTATTTTGGTAATTTTATAA-ACCAAGGGTATTTTAG
* * *
86809560 TAATCTTACAAATCGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTCTAG
1 TAATTTTACAAATCGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAG
* * *
86809613 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGG
1 TAATTTTACAAATC-GGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAG
* * * * *
86809667 TAATTTTACAAACCAAGGGTATTTTGGTGATTTTATAAACTAAGGGTATTCTAG
1 TAATTTTACAAATC-GGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAG
* * * * * *
86809721 TAATTTTGCTAATCGAGGGTATTTTGGTAATTTT-TCTAATCGAGGGTATTTTGG
1 TAATTTTACAAATCG-GGGTATTTTGGTAATTTTAT-AAACCAAGGGTATTTTAG
* *
86809775 TAATTTTGCTAATCGAGGGTATTTTGGTAATTT
1 TAATTTTACAAATCG-GGGTATTTTGGTAATTT
86809808 AGTAAACTAA
Statistics
Matches: 212, Mismatches: 32, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
52 3 0.01
53 42 0.20
54 167 0.79
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (53 bp):
TAATTTTACAAATCGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAG
Found at i:86809726 original size:108 final size:106
Alignment explanation
Indices: 86809519--86809826 Score: 347
Period size: 108 Copynumber: 2.9 Consensus size: 106
86809509 TTTTGTAAAT
* * * * *
86809519 CAGGGGTACTTTGGTAA-TTTTACAAGTCGAA-GGTATTTTAGTAATCTTACAAATCGGGGTATT
1 CAGGGGTATTTTGGTAATTTTTA-AA--CCAAGGGTATTTTGGTAATTTTACAAATCAGGGTATT
*
86809582 TTGGTGATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAAC
63 TTGGTGATTTTATAAACTAAGGGTATTCTAGTAATTTTACAAAC
*
86809626 CAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
1 CAGGGGTATTTTGGTAATTTT-TAAACCAAGGGTATTTTGGTAATTTTACAAATC-AGGGTATTT
* * *
86809691 TGGTGATTTTATAAACTAAGGGTATTCTAGTAATTTTGCTAAT
64 TGGTGATTTTATAAACTAAGGGTATTCTAGTAATTTTACAAAC
* * * * *
86809734 C-GAGGGTATTTTGGTAATTTTTCTAATCGAGGGTATTTTGGTAATTTTGCTAATCGAGGGTATT
1 CAG-GGGTATTTTGGTAATTTTT-AAACCAAGGGTATTTTGGTAATTTTACAAATC-AGGGTATT
* *
86809798 TTGGT-AATTTAGTAAACTAA-AGTATTCTA
63 TTGGTGATTTTA-TAAACTAAGGGTATTCTA
86809827 AACAGGGATA
Statistics
Matches: 175, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
106 3 0.02
107 52 0.30
108 118 0.67
109 2 0.01
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.40
Consensus pattern (106 bp):
CAGGGGTATTTTGGTAATTTTTAAACCAAGGGTATTTTGGTAATTTTACAAATCAGGGTATTTTG
GTGATTTTATAAACTAAGGGTATTCTAGTAATTTTACAAAC
Found at i:86812191 original size:44 final size:44
Alignment explanation
Indices: 86812140--86812287 Score: 138
Period size: 44 Copynumber: 3.4 Consensus size: 44
86812130 GCTCCGCTGC
* * *
86812140 AACTTCAGAGAGATAAGGCTGGTGGCTTCAATCTGCTCCAATGT
1 AACTTCAGAGAGATAAGGTTGGTGGCTTCAATCTACTCCAATGA
* * * * * **
86812184 AATTTCAGAGAGA-AGAGATTTGTAGCTTCGATCTACTCCGTTGA
1 AACTTCAGAGAGATA-AGGTTGGTGGCTTCAATCTACTCCAATGA
* *
86812228 AACTTCA-AGGAGATAAGGTTGGTGGCTTCAATCTACTCCACTGC
1 AACTTCAGA-GAGATAAGGTTGGTGGCTTCAATCTACTCCAATGA
* *
86812272 AACATCAGGGAGATAA
1 AACTTCAGAGAGATAA
86812288 TGTAATACCC
Statistics
Matches: 80, Mismatches: 20, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
43 2 0.03
44 77 0.96
45 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (44 bp):
AACTTCAGAGAGATAAGGTTGGTGGCTTCAATCTACTCCAATGA
Found at i:86816550 original size:8 final size:8
Alignment explanation
Indices: 86816537--86816566 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
86816527 ATTTAAGTAA
86816537 ATATTATT
1 ATATTATT
86816545 ATATTATT
1 ATATTATT
86816553 ATATTATT
1 ATATTATT
86816561 ATATTA
1 ATATTA
86816567 ATTAATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (8 bp):
ATATTATT
Found at i:86816574 original size:8 final size:9
Alignment explanation
Indices: 86816537--86816575 Score: 50
Period size: 8 Copynumber: 4.8 Consensus size: 9
86816527 ATTTAAGTAA
86816537 ATATT-ATT
1 ATATTAATT
86816545 ATATT-ATT
1 ATATTAATT
86816553 ATATT-ATT
1 ATATTAATT
86816561 ATATTAATT
1 ATATTAATT
86816570 A-ATTAA
1 ATATTAA
86816576 AGTAAATAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
8 26 0.87
9 4 0.13
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
ATATTAATT
Found at i:86816648 original size:23 final size:23
Alignment explanation
Indices: 86816614--86816659 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
86816604 ATTGTGTGGT
86816614 AATAATATTGTAAATGTGTAATA
1 AATAATATTGTAAATGTGTAATA
* *
86816637 AATACATA-TGTACATTTGTAATA
1 AATA-ATATTGTAAATGTGTAATA
86816660 CATATATGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.46, C:0.04, G:0.11, T:0.39
Consensus pattern (23 bp):
AATAATATTGTAAATGTGTAATA
Found at i:86817724 original size:40 final size:39
Alignment explanation
Indices: 86817668--86817784 Score: 135
Period size: 40 Copynumber: 2.9 Consensus size: 39
86817658 CCTTCTCGAG
*
86817668 AATTAAAAGTGAATAGGATTTATTCTTGATTCACTAAAAGA
1 AATT-AAAGTGAATAGGATTTATTCCTGATTCACTAAAA-A
* *
86817709 AATTAAAGTGAATAGGATTTATTCCTGATTCGCTAGAAA
1 AATTAAAGTGAATAGGATTTATTCCTGATTCACTAAAAA
* * * * *
86817748 TATATAAAGCGGATAGGATTTGTTCCCGATTCACTAA
1 AAT-TAAAGTGAATAGGATTTATTCCTGATTCACTAA
86817785 GGTAACTCAA
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.05
40 58 0.89
41 4 0.06
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.33
Consensus pattern (39 bp):
AATTAAAGTGAATAGGATTTATTCCTGATTCACTAAAAA
Found at i:86818927 original size:21 final size:21
Alignment explanation
Indices: 86818903--86818942 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
86818893 CCCCTGTTCT
* *
86818903 AATTTTAAAAAAATCATTAAA
1 AATTGTAAAAAAATAATTAAA
86818924 AATTGTAAAAAAATAATTA
1 AATTGTAAAAAAATAATTA
86818943 TGAGTTACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (21 bp):
AATTGTAAAAAAATAATTAAA
Found at i:86833694 original size:40 final size:40
Alignment explanation
Indices: 86833650--86833734 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 40
86833640 TTAAGTCCGG
*
86833650 ATATAGTACCAGCACT-AAGCCTGCGGGATTTAACCAGGAT
1 ATATAGTACCAGCA-TGAAGCCTGCAGGATTTAACCAGGAT
* * *
86833690 ATATATTACTAGCATGAAGCCTGCAGGATTTAACCCGGAT
1 ATATAGTACCAGCATGAAGCCTGCAGGATTTAACCAGGAT
86833730 ATATA
1 ATATA
86833735 TTATATCGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 1 0.03
40 39 0.98
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (40 bp):
ATATAGTACCAGCATGAAGCCTGCAGGATTTAACCAGGAT
Found at i:86847807 original size:99 final size:99
Alignment explanation
Indices: 86847635--86848012 Score: 505
Period size: 99 Copynumber: 3.9 Consensus size: 99
86847625 AAAACATGCG
* * * * **
86847635 AGGTATGAAAGTGTTAACATATCATGTTGCGTACTTGATATTCTGTATGATTAATAAAGTGACCG
1 AGGTATGAAAATGTTAATATATCATGTTGCATACTTGATATTCTGTATGATTGATAAAGTGTTCG
*
86847700 CACATATTATGTTGAAAATGAATGGGAATGAATC
66 CACTTATTATGTTGAAAATGAATGGGAATGAATC
* * *
86847734 AGGTATGAAAATGTTAATATATCATGTTGCATACTTGATATTTTTTATGATTGATAAAGTGTTCA
1 AGGTATGAAAATGTTAATATATCATGTTGCATACTTGATATTCTGTATGATTGATAAAGTGTTCG
* * *
86847799 CACTTATTATATTGAAAATGAATGGAAATTAATC
66 CACTTATTATGTTGAAAATGAATGGGAATGAATC
* * *
86847833 AGGTATAAAAATGTTAATATATCATGTTGCATACTTGATATTCTGTATTATTGATGAAGTGTTCG
1 AGGTATGAAAATGTTAATATATCATGTTGCATACTTGATATTCTGTATGATTGATAAAGTGTTCG
*
86847898 CACTTACTATGTTGAAAATGAATGGGAATGAATC
66 CACTTATTATGTTGAAAATGAATGGGAATGAATC
* * ** *
86847932 AGGTATGAAAGTATTAATATATCATGTTGTGTACTTGATATAT-TATATG-TTGATAAAGTGTTC
1 AGGTATGAAAATGTTAATATATCATGTTGCATACTTGATAT-TCTGTATGATTGATAAAGTGTTC
*
86847995 G-A-TCATTATG-TGAAAATG
65 GCACTTATTATGTTGAAAATG
86848013 GTTTTGGTTT
Statistics
Matches: 245, Mismatches: 33, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
95 8 0.03
96 6 0.02
97 1 0.00
98 14 0.06
99 215 0.88
100 1 0.00
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (99 bp):
AGGTATGAAAATGTTAATATATCATGTTGCATACTTGATATTCTGTATGATTGATAAAGTGTTCG
CACTTATTATGTTGAAAATGAATGGGAATGAATC
Found at i:86849504 original size:14 final size:15
Alignment explanation
Indices: 86849464--86849507 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
86849454 GTTAAGAGCA
*
86849464 TAAAATAATTATATAT
1 TAAAATAATT-TTTAT
*
86849480 TAAAATTATTTTTAT
1 TAAAATAATTTTTAT
86849495 T-AAATAATTTTTA
1 TAAAATAATTTTTA
86849508 ATCTTTTACT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 11 0.44
15 5 0.20
16 9 0.36
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TAAAATAATTTTTAT
Found at i:86852280 original size:82 final size:83
Alignment explanation
Indices: 86852143--86852309 Score: 246
Period size: 82 Copynumber: 2.0 Consensus size: 83
86852133 TTTAAATAGT
* * * * *
86852143 ATTATCGTAACATTTTATAGTGATTGAAAGATGTTTTGAGATTTTTATTTTTCATCCAAAATTAA
1 ATTATCGTAACATTTTATAGTGATTCAAAGATGTTTTAAAATTTTCACTTTTCATCCAAAATTAA
*
86852208 AAGAACTAATAAA-AAAA
66 AAGAACCAATAAAGAAAA
* *
86852225 ATTATCGTAACATTTTATAGTGATTCAAAGATGTTTTAAAATTTTCGCTTTTCATCCAAGATTAA
1 ATTATCGTAACATTTTATAGTGATTCAAAGATGTTTTAAAATTTTCACTTTTCATCCAAAATTAA
*
86852290 CAGAACCAATAAAGAAAA
66 AAGAACCAATAAAGAAAA
86852308 AT
1 AT
86852310 AAAATGGTAG
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
82 69 0.92
83 6 0.08
ACGTcount: A:0.42, C:0.10, G:0.11, T:0.37
Consensus pattern (83 bp):
ATTATCGTAACATTTTATAGTGATTCAAAGATGTTTTAAAATTTTCACTTTTCATCCAAAATTAA
AAGAACCAATAAAGAAAA
Found at i:86856525 original size:5 final size:5
Alignment explanation
Indices: 86856515--86856541 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
86856505 AGGATTTGGG
86856515 GCCAT GCCAT GCCAT GCCAT GCCAT GC
1 GCCAT GCCAT GCCAT GCCAT GCCAT GC
86856542 AATCGACTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.41, G:0.22, T:0.19
Consensus pattern (5 bp):
GCCAT
Found at i:86862207 original size:17 final size:18
Alignment explanation
Indices: 86862187--86862233 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
86862177 ACCCCTTTTG
86862187 AAATTTAAAAAATCAT-A
1 AAATTTAAAAAATCATAA
**
86862204 AAATTTATAAAAATTTTAA
1 AAATTTA-AAAAATCATAA
86862223 AAATTTAAAAA
1 AAATTTAAAAA
86862234 TTAAGCCCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 7 0.27
18 11 0.42
19 8 0.31
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (18 bp):
AAATTTAAAAAATCATAA
Found at i:86862223 original size:9 final size:9
Alignment explanation
Indices: 86862203--86862235 Score: 50
Period size: 8 Copynumber: 3.7 Consensus size: 9
86862193 AAAAAATCAT
86862203 AAAATTTATA
1 AAAATTT-TA
86862213 AAAATTTTA
1 AAAATTTTA
86862222 AAAA-TTTA
1 AAAATTTTA
86862230 AAAATT
1 AAAATT
86862236 AAGCCCTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.36
9 7 0.32
10 7 0.32
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (9 bp):
AAAATTTTA
Found at i:86862360 original size:9 final size:8
Alignment explanation
Indices: 86862338--86862363 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
86862328 AGTAGGGATC
86862338 AATTTTTA
1 AATTTTTA
86862346 AATTTTTA
1 AATTTTTA
86862354 AATTTTTA
1 AATTTTTA
86862362 AA
1 AA
86862364 AGTGTTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
AATTTTTA
Found at i:86868718 original size:16 final size:17
Alignment explanation
Indices: 86868691--86868724 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
86868681 TTTTATTTTG
*
86868691 AAATTAAAAAATGTATA
1 AAATTAAAAAATATATA
86868708 AAATT-AAAAATATATA
1 AAATTAAAAAATATATA
86868724 A
1 A
86868725 CTAAATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (17 bp):
AAATTAAAAAATATATA
Found at i:86868828 original size:27 final size:25
Alignment explanation
Indices: 86868798--86868884 Score: 95
Period size: 27 Copynumber: 3.4 Consensus size: 25
86868788 CTCGATGTGG
*
86868798 TATTTTTAGTAATTTTATATATTTATA
1 TATTTTTA-TAATTTTATAAATTT-TA
*
86868825 TATTTTTAATAAATTTATAAATTTTA
1 TATTTTT-ATAATTTTATAAATTTTA
* *
86868851 TTTTTTTATATTTTTAATAAATTTTA
1 TATTTTTATAATTTT-ATAAATTTTA
86868877 T-TTTTTAT
1 TATTTTTAT
86868885 TTTATAACTT
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
25 13 0.25
26 19 0.36
27 20 0.38
28 1 0.02
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (25 bp):
TATTTTTATAATTTTATAAATTTTA
Found at i:86868866 original size:34 final size:33
Alignment explanation
Indices: 86868808--86868887 Score: 106
Period size: 34 Copynumber: 2.3 Consensus size: 33
86868798 TATTTTTAGT
86868808 AATTTTATATATTTATATATTTTTAATAAATTTATA
1 AATTTTAT-T-TTTATATATTTTTAATAAATTT-TA
*
86868844 AATTTTATTTTTTTATATTTTTAATAAATTTTA
1 AATTTTATTTTTATATATTTTTAATAAATTTTA
**
86868877 TTTTTTATTTT
1 AATTTTATTTT
86868888 ATAACTTATA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
33 11 0.27
34 21 0.51
35 1 0.02
36 8 0.20
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (33 bp):
AATTTTATTTTTATATATTTTTAATAAATTTTA
Found at i:86877027 original size:48 final size:48
Alignment explanation
Indices: 86876962--86877132 Score: 186
Period size: 48 Copynumber: 3.6 Consensus size: 48
86876952 ACATCATGAG
* *
86876962 AGCTAGTGTAAGACATGTCTAGAACATGAATCGGCCTCGAGAAATACA
1 AGCTAGTGTAAGACATGTCTAGGACATGAATCGGCCTTGAGAAATACA
* * * ** ** *
86877010 AGCCAGTGTAAGACATGT-TTGTGACATGCATCGGTATTGAG-ACGA-G
1 AGCTAGTGTAAGACATGTCTAG-GACATGAATCGGCCTTGAGAAATACA
* * *
86877056 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACA
1 AGCTAGTGTAAGACATGTCTAGGACATGAATCGGCCTTGAGAAATACA
*
86877104 AGCTAGTGTAAGACCTGTCTAGGACATGA
1 AGCTAGTGTAAGACATGTCTAGGACATGA
86877133 CATCAGCTTA
Statistics
Matches: 98, Mismatches: 21, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
46 34 0.35
47 7 0.07
48 57 0.58
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.24
Consensus pattern (48 bp):
AGCTAGTGTAAGACATGTCTAGGACATGAATCGGCCTTGAGAAATACA
Found at i:86877096 original size:46 final size:47
Alignment explanation
Indices: 86876917--86877136 Score: 194
Period size: 46 Copynumber: 4.7 Consensus size: 47
86876907 TGATATGTGT
* ** * * *
86876917 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCC-ACATCATGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGA-GAAGACAA
* * * * *
86876963 GCTAGTGTAAGACATGTCTAGAACATGAATCGGCCTCGAGAAATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAG-AAGACAA
* * * ** * *
86877011 GCCAGTGTAAGACATGTTTGTGACATGCATCGGTATTGAGACGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGAAGACAA
*
86877057 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGA-AGACAA
* *
86877105 GCTAGTGTAAGACCTGTCTAGGACATGACATC
1 GCTAGTGTAAGACATGTCTGGGACATG-CATC
86877137 AGCTTATTGT
Statistics
Matches: 136, Mismatches: 32, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
46 68 0.50
47 6 0.04
48 58 0.43
49 4 0.03
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGAAGACAA
Found at i:86877130 original size:94 final size:95
Alignment explanation
Indices: 86876959--86877136 Score: 261
Period size: 94 Copynumber: 1.9 Consensus size: 95
86876949 GCCACATCAT
86876959 GAGAGCTAGTGTAAGACATGTCTAGAACATGAATCGGCCTCGAGAAATACAAGCCAGTGTAAGAC
1 GAGAGCTAGTGTAAGACATGTCTAGAACATGAATCGGCCTCGAGAAATACAAGCCAGTGTAAGAC
*
86877024 ATGTTTGTGACATG-CATCGGTATTGAGAC
66 ATGTTAGTGACATGACATCGGTATTGAGAC
* * * * * *
86877053 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAAGCTAGTGTAAGAC
1 GAGAGCTAGTGTAAGACATGTCTAGAACATGAATCGGCCTCGAGAAATACAAGCCAGTGTAAGAC
*
86877118 CTGTCTAG-GACATGACATC
66 ATGT-TAGTGACATGACATC
86877137 AGCTTATTGT
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
94 68 0.92
95 6 0.08
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (95 bp):
GAGAGCTAGTGTAAGACATGTCTAGAACATGAATCGGCCTCGAGAAATACAAGCCAGTGTAAGAC
ATGTTAGTGACATGACATCGGTATTGAGAC
Found at i:86878372 original size:28 final size:28
Alignment explanation
Indices: 86878332--86878396 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
86878322 CATAGGCTGT
* * *
86878332 GACATGGGCGTGTCATGGTCGTGTGAGG
1 GACACGGGCGTGTCATAGCCGTGTGAGG
86878360 GACACGGGCGTGTCATAGCCGTGTGAGG
1 GACACGGGCGTGTCATAGCCGTGTGAGG
86878388 GACACGGGC
1 GACACGGGC
86878397 TATAGACACA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.17, C:0.20, G:0.45, T:0.18
Consensus pattern (28 bp):
GACACGGGCGTGTCATAGCCGTGTGAGG
Found at i:86881418 original size:30 final size:31
Alignment explanation
Indices: 86881365--86881436 Score: 76
Period size: 30 Copynumber: 2.3 Consensus size: 31
86881355 GCTTTAAATT
86881365 AATAATGATAAAATTACACTTTAACTC-TTCAAA
1 AATAAT-A-AAAATTACACTTTAA-TCATTCAAA
* *
86881398 AATAATAAAAATTAGA-TTTAATCATTTAAA
1 AATAATAAAAATTACACTTTAATCATTCAAA
*
86881428 AATTATAAA
1 AATAATAAA
86881437 TATACAAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
29 2 0.06
30 18 0.51
31 8 0.23
32 1 0.03
33 6 0.17
ACGTcount: A:0.54, C:0.08, G:0.03, T:0.35
Consensus pattern (31 bp):
AATAATAAAAATTACACTTTAATCATTCAAA
Found at i:86882224 original size:56 final size:56
Alignment explanation
Indices: 86882138--86882249 Score: 206
Period size: 56 Copynumber: 2.0 Consensus size: 56
86882128 AACAAAAAAA
* *
86882138 TATTTTAGGTACTAAAGTGAAAAAAATAAGTATAATTCAAAGACCAAATCTTGAAT
1 TATTTTAAGTAATAAAGTGAAAAAAATAAGTATAATTCAAAGACCAAATCTTGAAT
86882194 TATTTTAAGTAATAAAGTGAAAAAAATAAGTATAATTCAAAGACCAAATCTTGAAT
1 TATTTTAAGTAATAAAGTGAAAAAAATAAGTATAATTCAAAGACCAAATCTTGAAT
86882250 GAAGCTTTTT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.50, C:0.08, G:0.12, T:0.30
Consensus pattern (56 bp):
TATTTTAAGTAATAAAGTGAAAAAAATAAGTATAATTCAAAGACCAAATCTTGAAT
Found at i:86883595 original size:20 final size:20
Alignment explanation
Indices: 86883572--86883610 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
86883562 TCTTATTCTG
*
86883572 AATTTTAGGATTTTATCCTA
1 AATTTTAAGATTTTATCCTA
86883592 AATTTTAAGATTTTATCCT
1 AATTTTAAGATTTTATCCT
86883611 GAAAAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.10, G:0.08, T:0.51
Consensus pattern (20 bp):
AATTTTAAGATTTTATCCTA
Found at i:86883672 original size:20 final size:20
Alignment explanation
Indices: 86883631--86883678 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
86883621 AAATCCAAAT
*
86883631 TAAAATATTGAAATTCAGGA
1 TAAAATATTGAAATTCAAGA
* *
86883651 TAAAATCTTGAAATTTAAGA
1 TAAAATATTGAAATTCAAGA
86883671 TAAGAATA
1 TAA-AATA
86883679 CTGATGTGGC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 20 0.87
21 3 0.13
ACGTcount: A:0.52, C:0.04, G:0.12, T:0.31
Consensus pattern (20 bp):
TAAAATATTGAAATTCAAGA
Found at i:86886694 original size:40 final size:40
Alignment explanation
Indices: 86886639--86887072 Score: 751
Period size: 40 Copynumber: 10.8 Consensus size: 40
86886629 GCATTTGTAT
86886639 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
86886679 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
86886719 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
86886759 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
86886799 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
86886839 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
86886879 ATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
86886919 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
86886959 ATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
86886999 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* ** *
86887039 CTATGCCCGGGCTAAGACCCGAAGGCAATTGTGC
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
86887073 TTGTGGTAAT
Statistics
Matches: 372, Mismatches: 22, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 372 1.00
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
Found at i:86888605 original size:21 final size:21
Alignment explanation
Indices: 86888576--86888616 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
86888566 GGTGATAATA
*
86888576 ATTACTATAATTGTGTGATTT
1 ATTACTATAATTGTGGGATTT
* *
86888597 ATTATTATAGTTGTGGGATT
1 ATTACTATAATTGTGGGATT
86888617 AAAATTAATG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.02, G:0.20, T:0.51
Consensus pattern (21 bp):
ATTACTATAATTGTGGGATTT
Found at i:86897851 original size:6 final size:6
Alignment explanation
Indices: 86897840--86897864 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
86897830 ATAGTGAAAT
86897840 GTAGCA GTAGCA GTAGCA GTAGCA G
1 GTAGCA GTAGCA GTAGCA GTAGCA G
86897865 ATGATGTGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.36, T:0.16
Consensus pattern (6 bp):
GTAGCA
Found at i:86903490 original size:16 final size:16
Alignment explanation
Indices: 86903447--86903493 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
86903437 AACTAAAGCC
*
86903447 TTGTTCTGAAT-ATAG
1 TTGTTCTGAATAACAG
* *
86903462 TTATTCTCAAATAACAG
1 TTGTTCT-GAATAACAG
86903479 TTGTTCTGAATAACA
1 TTGTTCTGAATAACA
86903494 ATAATTCTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
15 6 0.24
16 10 0.40
17 9 0.36
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.40
Consensus pattern (16 bp):
TTGTTCTGAATAACAG
Found at i:86907572 original size:22 final size:21
Alignment explanation
Indices: 86907530--86907572 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
86907520 AACTTGGCAC
* **
86907530 CATAATCATTTAATTTTTTAA
1 CATAATCAATTAATTCATTAA
86907551 CATAATTCAATTAATTCATTAA
1 CATAA-TCAATTAATTCATTAA
86907573 ATTTAACTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.47
Consensus pattern (21 bp):
CATAATCAATTAATTCATTAA
Found at i:86917086 original size:22 final size:19
Alignment explanation
Indices: 86917048--86917085 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
86917038 CATATTGGCG
86917048 ACACTAATAAAAATTATTA
1 ACACTAATAAAAATTATTA
86917067 ACACTAATAAAAATTATTA
1 ACACTAATAAAAATTATTA
86917086 TTGTTATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.58, C:0.11, G:0.00, T:0.32
Consensus pattern (19 bp):
ACACTAATAAAAATTATTA
Found at i:86921001 original size:38 final size:39
Alignment explanation
Indices: 86920912--86921008 Score: 115
Period size: 39 Copynumber: 2.5 Consensus size: 39
86920902 CAAATATAAT
* * * *
86920912 AATTACAATTACCACAAGTATAATAATGTTTGACCGAAA
1 AATTACAATTACAATAATTATAATAATATTTGACCGAAA
* *
86920951 AATTACAATTACAATAATTATAATAATATTTGATCG-TA
1 AATTACAATTACAATAATTATAATAATATTTGACCGAAA
**
86920989 AATTTTAATTACAATAATTA
1 AATTACAATTACAATAATTA
86921009 CAACAAGGAT
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
38 19 0.38
39 31 0.62
ACGTcount: A:0.47, C:0.10, G:0.06, T:0.36
Consensus pattern (39 bp):
AATTACAATTACAATAATTATAATAATATTTGACCGAAA
Found at i:86924370 original size:27 final size:26
Alignment explanation
Indices: 86924340--86924398 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
86924330 ATTTACTAAA
*
86924340 ATACCCCTAAGTATAAAAATTACCATT
1 ATACCCCTAAGT-GAAAAATTACCATT
* * *
86924367 ATACCTCTAGGTGCAAAATTACCATT
1 ATACCCCTAAGTGAAAAATTACCATT
86924393 ATACCC
1 ATACCC
86924399 TAGGGTTAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 17 0.63
27 10 0.37
ACGTcount: A:0.39, C:0.25, G:0.07, T:0.29
Consensus pattern (26 bp):
ATACCCCTAAGTGAAAAATTACCATT
Found at i:86924546 original size:28 final size:28
Alignment explanation
Indices: 86924506--86924592 Score: 135
Period size: 27 Copynumber: 3.2 Consensus size: 28
86924496 GAGGAAACGT
86924506 TCTGGTGGCTCTGCCACAAATATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTGTA
86924534 TCTGGTGGCTCTGCCAC-AATATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* *
86924561 TCTGGTGACTCTGTCA-AAATATCTGT-
1 TCTGGTGGCTCTGCCACAAATATCTGTA
86924587 TCTGGT
1 TCTGGT
86924593 AGCCATGCTA
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
26 6 0.11
27 33 0.59
28 17 0.30
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:86927079 original size:6 final size:6
Alignment explanation
Indices: 86927070--86927099 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
86927060 GGGCCCATAT
*
86927070 CAGATA CAGATA CAGATA CAGTTA CAGATA
1 CAGATA CAGATA CAGATA CAGATA CAGATA
86927100 TGCAACTCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.20
Consensus pattern (6 bp):
CAGATA
Found at i:86928916 original size:20 final size:20
Alignment explanation
Indices: 86928891--86928938 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
86928881 AGTCAAGCTA
86928891 CAAGCTCAGGGACTGTCAGC
1 CAAGCTCAGGGACTGTCAGC
* *
86928911 CAAGCTCGGGGACTGTTAGC
1 CAAGCTCAGGGACTGTCAGC
86928931 CAAGCTCA
1 CAAGCTCA
86928939 TAACACTATC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.25, C:0.29, G:0.29, T:0.17
Consensus pattern (20 bp):
CAAGCTCAGGGACTGTCAGC
Found at i:86929829 original size:17 final size:17
Alignment explanation
Indices: 86929804--86929839 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
86929794 TTGTTTATTA
*
86929804 AATTGATTGACTAAACT
1 AATTAATTGACTAAACT
*
86929821 AATTAATTGATTAAACT
1 AATTAATTGACTAAACT
86929838 AA
1 AA
86929840 AGCAAAGAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.36
Consensus pattern (17 bp):
AATTAATTGACTAAACT
Found at i:86974222 original size:46 final size:46
Alignment explanation
Indices: 86974172--86974435 Score: 366
Period size: 46 Copynumber: 5.7 Consensus size: 46
86974162 TGCCATATTG
* * * ** * * *
86974172 TCTTTCAACTATAGTCTTACTCATTTTTTGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTA
*** **** * *
86974218 TCTTTCAACCATGGTCTTATTTATTTCCCGGCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTA
86974264 TCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTA
*
86974310 TCTTTCAACCATGGTCTTACACGTTTCATATCAGGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTA
86974356 TCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTA
86974402 TCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAG
86974436 AGAGCACACT
Statistics
Matches: 199, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 199 1.00
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.39
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTA
Found at i:86976608 original size:18 final size:20
Alignment explanation
Indices: 86976593--86976629 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
86976583 TAATAATAAA
*
86976593 ATATCTCATTAAAATAATAT
1 ATATCTAATTAAAATAATAT
86976613 ATATCTAATT-AAATAAT
1 ATATCTAATTAAAATAAT
86976630 CATAAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (20 bp):
ATATCTAATTAAAATAATAT
Found at i:86978308 original size:172 final size:172
Alignment explanation
Indices: 86978038--86978373 Score: 485
Period size: 172 Copynumber: 2.0 Consensus size: 172
86978028 TTCTAGACCT
* * * *
86978038 CATTGAAAAGATCTGTTTGATCTTACAGACTATTATTTGTTTATTTGTTAGTTATAGTTTAGTTT
1 CATTGAAAAGATCTGTTGGATCTTACAGACTATTATTTGTTTATTTGTTAGTTACACTTTAGTTA
* * *
86978103 AATCCCAATCTTGTTCTTATTAGTTTCCATTGAATTTGTTTGCTATATTAATTGAGTTCCAAATC
66 AATCCCAATCTTATTCTTATTAGTTTCCATTGAATTTGTTCGCTATATTAACTGAGTTCCAAATC
* * *
86978168 TTGTCTTAGTGCCATTCATGTTGGTTAGGATGTTTTGGAATG
131 TTGTCTTAGTGCCACTCATATTGGTCAGGATGTTTTGGAATG
* * * *
86978210 CATTGAAAAGGTCTGTTGGATCTTACA-ATCTGTTATTTGTTTGTTTGTTAGTTCCACTTTAGTT
1 CATTGAAAAGATCTGTTGGATCTTACAGA-CTATTATTTGTTTATTTGTTAGTTACACTTTAGTT
* **
86978274 AAATCTCAATCTTATTCTTATTAGTTTCCATTGAATTTGTTCGCTATATTAACTGAGTTTTAAAT
65 AAATCCCAATCTTATTCTTATTAGTTTCCATTGAATTTGTTCGCTATATTAACTGAGTTCCAAAT
* *
86978339 CTTGTTTTAGTGTCACTCATATTGGTCAGGATGTT
130 CTTGTCTTAGTGCCACTCATATTGGTCAGGATGTT
86978374 CCTGTAGCAC
Statistics
Matches: 144, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
171 1 0.01
172 143 0.99
ACGTcount: A:0.24, C:0.12, G:0.16, T:0.48
Consensus pattern (172 bp):
CATTGAAAAGATCTGTTGGATCTTACAGACTATTATTTGTTTATTTGTTAGTTACACTTTAGTTA
AATCCCAATCTTATTCTTATTAGTTTCCATTGAATTTGTTCGCTATATTAACTGAGTTCCAAATC
TTGTCTTAGTGCCACTCATATTGGTCAGGATGTTTTGGAATG
Found at i:86979579 original size:20 final size:20
Alignment explanation
Indices: 86979554--86979642 Score: 65
Period size: 20 Copynumber: 4.2 Consensus size: 20
86979544 CATATAGAGT
* * *
86979554 ATGCCATAAAGGATAATAGA
1 ATGCCACAAAGGATAACAAA
*
86979574 ATGCCACAAGGGATAACAAA
1 ATGCCACAAAGGATAACAAA
86979594 ATGCCAC-AAGGACTAAATCAGAA
1 ATGCCACAAAGGA-T-AA-CA-AA
*
86979617 TATGCCACAAA-GACTAACAGA
1 -ATGCCACAAAGGA-TAACAAA
86979638 ATGCC
1 ATGCC
86979643 TCATAGGCAC
Statistics
Matches: 57, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
19 4 0.07
20 29 0.51
21 3 0.05
22 4 0.07
23 4 0.07
24 11 0.19
25 2 0.04
ACGTcount: A:0.47, C:0.20, G:0.18, T:0.15
Consensus pattern (20 bp):
ATGCCACAAAGGATAACAAA
Found at i:86981419 original size:25 final size:25
Alignment explanation
Indices: 86981390--86981445 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
86981380 GAGCCCGTGA
* *
86981390 GAGCATACAGA-TCTACAACTTGAGT
1 GAGCATACAGATTC-ACAACTCGAAT
*
86981415 GAGCATACCGATTCACAACTCGAAT
1 GAGCATACAGATTCACAACTCGAAT
86981440 GAGCAT
1 GAGCAT
86981446 TCATGTACAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 25 0.93
26 2 0.07
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.21
Consensus pattern (25 bp):
GAGCATACAGATTCACAACTCGAAT
Found at i:86989583 original size:18 final size:18
Alignment explanation
Indices: 86989560--86989595 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
86989550 TTCCTGGGTG
86989560 GTAGTCGATTATCAACTC
1 GTAGTCGATTATCAACTC
**
86989578 GTAGTCTTTTATCAACTC
1 GTAGTCGATTATCAACTC
86989596 CAACCATCTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (18 bp):
GTAGTCGATTATCAACTC
Found at i:86992863 original size:50 final size:50
Alignment explanation
Indices: 86992788--86993180 Score: 430
Period size: 50 Copynumber: 7.8 Consensus size: 50
86992778 TCCATTGTGA
* *
86992788 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTGCCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * *
86992838 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG
* * * * * * *
86992889 ATCACATGTGTACTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* *
86992939 GTCACATGTGTGGTACTAAGTGCAAGCTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * *
86992989 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA-TAACTTTG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG
* * * * * * * * *
86993040 ATCACGTATGTAGTACTAAGTGCAGGCTACTACATGTATCATATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
*
86993090 GTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * *
86993140 ATCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
86993181 AAGAGCTTCG
Statistics
Matches: 279, Mismatches: 58, Indels: 12
0.80 0.17 0.03
Matches are distributed among these distances:
49 5 0.02
50 199 0.71
51 74 0.27
52 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
Found at i:86992969 original size:101 final size:100
Alignment explanation
Indices: 86992789--86993180 Score: 380
Period size: 101 Copynumber: 3.9 Consensus size: 100
86992779 CCATTGTGAG
* * * *
86992789 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTGCCAGATTGATAGGTCACATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTAC
* * * *
86992854 TAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCGA
66 TAAGTGCAAGCTACTACGCGTACCAGATTAA--TAGA
* * * * *
86992890 TCACATGTGTACTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAAGTCACATGTGTGGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTAC
* * *
86992955 TAAGTGCAAGCTACTACGTGTACCAGATTGATAGG
66 TAAGTGCAAGCTACTACGCGTACCAGATTAATAGA
* * * ** * *
86992990 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-AACTTTGATCACGTATGTAGT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGA-TAAG-TCACATGTGTAGT
* ** * * *
86993054 ACTAAGTGCAGGCTACTACATGTATCATATGGTTA-AG-
64 ACTAAGTGCAAGCTACTACGCGTACCAGAT--TAATAGA
* * *
86993091 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGAT-AGATCGCATGTGTAGTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAG-TCACATGTGTAGTA
* *
86993155 CTAAGTGCAGGCTACTATGCGTACCA
65 CTAAGTGCAAGCTACTACGCGTACCA
86993181 AAGAGCTTCG
Statistics
Matches: 240, Mismatches: 45, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
100 77 0.32
101 155 0.65
102 6 0.03
103 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTAC
TAAGTGCAAGCTACTACGCGTACCAGATTAATAGA
Found at i:86993061 original size:151 final size:151
Alignment explanation
Indices: 86992787--86993180 Score: 635
Period size: 151 Copynumber: 2.6 Consensus size: 151
86992777 ATCCATTGTG
* * *
86992787 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTGCCAGATTGATAGGTCACATGTGTAGT
1 AGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* * *
86992852 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACATGTGTACTACTAAGTGCAAGCT
66 ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACATATGTACTACTAAGTGCAAGCT
*
86992917 ACTACGTGTATCAGATGGTTA
131 ACTACATGTATCAGATGGTTA
* *
86992938 AGTCACATGTGTGGTACTAAGTGCAAGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* * * * *
86993003 ACTAAGTGCAGGCTACTATGTGTACCAGATAACTTTGATCACGTATGTAGTACTAAGTGCAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACATATGTACTACTAAGTGCAAGCT
*
86993068 ACTACATGTATCATATGGTTA
131 ACTACATGTATCAGATGGTTA
* *
86993089 AGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGATCGCATGTGTAGT
1 AGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
86993154 ACTAAGTGCAGGCTACTATGCGTACCA
66 ACTAAGTGCAGGCTACTATGCGTACCA
86993181 AAGAGCTTCG
Statistics
Matches: 223, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
151 223 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (151 bp):
AGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACATATGTACTACTAAGTGCAAGCT
ACTACATGTATCAGATGGTTA
Found at i:86993403 original size:16 final size:16
Alignment explanation
Indices: 86993382--86993413 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
86993372 AGAATGGAGT
86993382 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
86993398 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
86993414 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Done.