Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 264 of 333
Found at i:87298356 original size:46 final size:46
Alignment explanation
Indices: 87298304--87298572 Score: 396
Period size: 46 Copynumber: 5.8 Consensus size: 46
87298294 GCTCTCTGAA
* * *
87298304 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
*
87298350 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
* *
87298396 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGGC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
* *
87298442 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGAAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
** *
87298488 ATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
* * *
87298534 A-GAAAGTGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 ATGAAA-TGAGTAAGACCATGGTTGAAAGATACCATGGCA
87298573 TTATGTCGAA
Statistics
Matches: 207, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 203 0.98
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.20
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
Found at i:87298718 original size:26 final size:26
Alignment explanation
Indices: 87298661--87298755 Score: 70
Period size: 26 Copynumber: 3.6 Consensus size: 26
87298651 TCAAATGATG
* *
87298661 AATGGTTTTATGAATTGGTTATACAA
1 AATGGTTGTATGAAATGGTTATACAA
87298687 AATGGTTGTATGAAAT-GTT-TACAA
1 AATGGTTGTATGAAATGGTTATACAA
** * *
87298711 GAATTGGTCATATGGAAAT-ATATGTACAA
1 -AA-TGGTTGTAT-GAAATGGT-TATACAA
*
87298740 AATAGTTGTATGAAAT
1 AATGGTTGTATGAAAT
87298756 AATTAAGAAG
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
24 5 0.09
25 5 0.09
26 26 0.46
27 12 0.21
28 3 0.05
29 5 0.09
ACGTcount: A:0.39, C:0.04, G:0.20, T:0.37
Consensus pattern (26 bp):
AATGGTTGTATGAAATGGTTATACAA
Found at i:87301624 original size:12 final size:12
Alignment explanation
Indices: 87301602--87301630 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
87301592 AATTGATCAC
87301602 ATATA-TTAAAA
1 ATATATTTAAAA
87301613 ATATATTTAAAA
1 ATATATTTAAAA
87301625 ATATAT
1 ATATAT
87301631 ATTTTGTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATTTAAAA
Found at i:87303637 original size:43 final size:43
Alignment explanation
Indices: 87303576--87303662 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
87303566 CAGATTGCAC
87303576 AGAAATTTTACAAATGGACTATTTGCGTCTTAAAAACTACCGT
1 AGAAATTTTACAAATGGACTATTTGCGTCTTAAAAACTACCGT
87303619 AGAAATTTTACAAATGGACTATTTGCGTCTTAAAAACTACCGT
1 AGAAATTTTACAAATGGACTATTTGCGTCTTAAAAACTACCGT
87303662 A
1 A
87303663 CATCTTTCCT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (43 bp):
AGAAATTTTACAAATGGACTATTTGCGTCTTAAAAACTACCGT
Found at i:87306378 original size:14 final size:15
Alignment explanation
Indices: 87306342--87306375 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
87306332 TTATTATTGA
*
87306342 ATTTTGAAAATTTTC
1 ATTTTGAAAAATTTC
87306357 ATTTTGAAAAATTTC
1 ATTTTGAAAAATTTC
87306372 ATTT
1 ATTT
87306376 GAAGAGCAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (15 bp):
ATTTTGAAAAATTTC
Found at i:87307487 original size:23 final size:23
Alignment explanation
Indices: 87307461--87307511 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
87307451 CACACATATA
87307461 TCACTTTGTATCATATTACTTAT
1 TCACTTTGTATCATATTACTTAT
87307484 TCACTTTGTATCATATTACTTAT
1 TCACTTTGTATCATATTACTTAT
87307507 TCACT
1 TCACT
87307512 ACATTTTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.25, C:0.20, G:0.04, T:0.51
Consensus pattern (23 bp):
TCACTTTGTATCATATTACTTAT
Found at i:87307544 original size:17 final size:17
Alignment explanation
Indices: 87307517--87307549 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
87307507 TCACTACATT
87307517 TTTATTTCACATATTCAC
1 TTTATTTCACA-ATTCAC
87307535 TTTA-TTCACAATTCA
1 TTTATTTCACAATTCA
87307550 TAAAAATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 6 0.40
18 4 0.27
ACGTcount: A:0.30, C:0.21, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTATTTCACAATTCAC
Found at i:87308755 original size:10 final size:10
Alignment explanation
Indices: 87308728--87308765 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
87308718 TTAAATTCTA
87308728 AAAGATAAAT
1 AAAGATAAAT
87308738 ACAA-ATAAAT
1 A-AAGATAAAT
*
87308748 AAAGATAATT
1 AAAGATAAAT
87308758 AAAGATAA
1 AAAGATAA
87308766 CAACTAAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.68, C:0.03, G:0.08, T:0.21
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:87309751 original size:10 final size:10
Alignment explanation
Indices: 87309712--87309753 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
87309702 ATTCCAGGTG
*
87309712 TAATTTTTGT
1 TAATTTTTTT
*
87309722 TAATTATTTT
1 TAATTTTTTT
*
87309732 T-ATATTTTT
1 TAATTTTTTT
87309741 TAATTTTTTT
1 TAATTTTTTT
87309751 TAA
1 TAA
87309754 AAAAAATCCT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
9 7 0.27
10 19 0.73
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (10 bp):
TAATTTTTTT
Found at i:87311373 original size:18 final size:18
Alignment explanation
Indices: 87311352--87311386 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
87311342 AGCAGATTAG
87311352 CCCTTCTCAGCAACCAAA
1 CCCTTCTCAGCAACCAAA
87311370 CCCTTCTCAGCAACCAA
1 CCCTTCTCAGCAACCAA
87311387 CTTTCAACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.46, G:0.06, T:0.17
Consensus pattern (18 bp):
CCCTTCTCAGCAACCAAA
Found at i:87313932 original size:23 final size:23
Alignment explanation
Indices: 87313905--87313978 Score: 112
Period size: 23 Copynumber: 3.2 Consensus size: 23
87313895 TGGTAGGAGC
*
87313905 TTATTGGCACTTTGGTGCGATTG
1 TTATTGGCACTTTAGTGCGATTG
*
87313928 TTATTGACACTTTAGTGCGATTG
1 TTATTGGCACTTTAGTGCGATTG
* *
87313951 TTATTGGCACTTCAATGCGATTG
1 TTATTGGCACTTTAGTGCGATTG
87313974 TTATT
1 TTATT
87313979 ATGGAGTGTT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.19, C:0.14, G:0.23, T:0.45
Consensus pattern (23 bp):
TTATTGGCACTTTAGTGCGATTG
Found at i:87314087 original size:27 final size:27
Alignment explanation
Indices: 87314052--87314106 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
87314042 GTCTGAAGTT
*
87314052 TAAATTTGTGTATTTGTATTGAGTTAA
1 TAAACTTGTGTATTTGTATTGAGTTAA
87314079 TAAACTTGTGTATTTGTATTGAGTTAA
1 TAAACTTGTGTATTTGTATTGAGTTAA
87314106 T
1 T
87314107 GCCTAGTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.29, C:0.02, G:0.18, T:0.51
Consensus pattern (27 bp):
TAAACTTGTGTATTTGTATTGAGTTAA
Found at i:87318009 original size:81 final size:82
Alignment explanation
Indices: 87317914--87318161 Score: 268
Period size: 81 Copynumber: 3.1 Consensus size: 82
87317904 CACCCCTGCC
* * * * * * *
87317914 TTTGGCACTCCTTCTTCCACCCCTGCCTTTGGCACTCCTTCTTCCACCCCGGCCTTTGGAACTCC
1 TTTGGCACTACTTCTTCCACACCTGCATTTGGCACTCCGTCTTCGACACCGGCATTTGGAACTCC
* *
87317979 -TCCTTCAACTCCGGCT
66 ATCCTTCGACACCGGCT
** * * *
87317995 TTTGGGGCTACTTCTTCCACACCGGCATTTGGCACTCCGTCTTCGACACCGGCGTTTGGCACTCC
1 TTTGGCACTACTTCTTCCACACCTGCATTTGGCACTCCGTCTTCGACACCGGCATTTGGAACTCC
*
87318060 AT-CTTCGACACCGGCG
66 ATCCTTCGACACCGGCT
* * * * * **
87318076 TTTGGCACTCCGTCTTCGACACCTTCGTTTGGGGCTCCGTCTTCGACACCGGCATTTGGAACTCC
1 TTTGGCACTACTTCTTCCACACCTGCATTTGGCACTCCGTCTTCGACACCGGCATTTGGAACTCC
*
87318141 GTCC-TCGACACCGGCT
66 ATCCTTCGACACCGGCT
87318157 TTTGG
1 TTTGG
87318162 AACTCCATCA
Statistics
Matches: 137, Mismatches: 28, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
81 135 0.99
82 2 0.01
ACGTcount: A:0.12, C:0.38, G:0.21, T:0.30
Consensus pattern (82 bp):
TTTGGCACTACTTCTTCCACACCTGCATTTGGCACTCCGTCTTCGACACCGGCATTTGGAACTCC
ATCCTTCGACACCGGCT
Found at i:87318093 original size:27 final size:27
Alignment explanation
Indices: 87317884--87318167 Score: 237
Period size: 27 Copynumber: 10.5 Consensus size: 27
87317874 TTCCACTTCT
* * * * *
87317884 GCCTTCGGCACTCCTTCTTCCACCCCT
1 GCCTTTGGCACTCCGTCTTCGACACCG
* * * *
87317911 GCCTTTGGCACTCCTTCTTCCACCCCT
1 GCCTTTGGCACTCCGTCTTCGACACCG
* * *
87317938 GCCTTTGGCACTCCTTCTTCCACCCCG
1 GCCTTTGGCACTCCGTCTTCGACACCG
* * *
87317965 GCCTTTGGAACTCC-TCCTTCAACTCCG
1 GCCTTTGGCACTCCGT-CTTCGACACCG
* ** * * *
87317992 GCTTTTGGGGCTACTTCTTCCACACCG
1 GCCTTTGGCACTCCGTCTTCGACACCG
*
87318019 GCATTTGGCACTCCGTCTTCGACACCG
1 GCCTTTGGCACTCCGTCTTCGACACCG
* *
87318046 GCGTTTGGCACTCCATCTTCGACACCG
1 GCCTTTGGCACTCCGTCTTCGACACCG
* *
87318073 GCGTTTGGCACTCCGTCTTCGACACCT
1 GCCTTTGGCACTCCGTCTTCGACACCG
* * **
87318100 TCGTTTGGGGCTCCGTCTTCGACACCG
1 GCCTTTGGCACTCCGTCTTCGACACCG
* * *
87318127 GCATTTGGAACTCCGTCCTCGACACCG
1 GCCTTTGGCACTCCGTCTTCGACACCG
* *
87318154 GCTTTTGGAACTCC
1 GCCTTTGGCACTCC
87318168 ATCAACGCCG
Statistics
Matches: 224, Mismatches: 31, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.00
27 222 0.99
28 1 0.00
ACGTcount: A:0.12, C:0.40, G:0.19, T:0.29
Consensus pattern (27 bp):
GCCTTTGGCACTCCGTCTTCGACACCG
Found at i:87325397 original size:146 final size:148
Alignment explanation
Indices: 87325169--87325489 Score: 476
Period size: 146 Copynumber: 2.2 Consensus size: 148
87325159 AGTTTTGATT
87325169 TTTTTTTTAAAAAGAGAAAGTTTAGATTTTTAAAAATAGAAATATATTTTTTAGTCATTTTAAAG
1 TTTTTTTTAAAAAGAGAAAGTTTAGATTTTTAAAAATAGAAATATATTTTTTAGTCATTTTAAAG
* * *
87325234 GAAAAGTTTAAATTTTTAAAACAAAACTTTGATATTTTCCAACTATTTCGAAATAAAGTTTTGAT
66 GAAAAGTTTAAAATTTTAAAACAAAACTTTGATATTTTCCAACTATTTCGAAATAAAATTTTAAT
87325299 TTTTAAGAAAAA-TAATAA
131 TTTTAA-AAAAAGTAATAA
*
87325317 TTTTTTTTAGAAAA-AGAGAGTTTAGATTTTTAAAAATA-AAA-ATATTTTTTAGTCATTTTAAA
1 TTTTTTTTA-AAAAGAGAAAGTTTAGATTTTTAAAAATAGAAATATATTTTTTAGTCATTTTAAA
** * *
87325379 GGAAAAGTTTAAAATTTTAAAACAAAGTTTTGATCTTTTTCAACTATTTCGAAATAAAATTTTAA
65 GGAAAAGTTTAAAATTTTAAAACAAAACTTTGATATTTTCCAACTATTTCGAAATAAAATTTTAA
* *
87325444 TTTTTAAAAAAAGTAGTGA
130 TTTTTAAAAAAAGTAATAA
*
87325463 -TTTTTTTAAAAAGA-AAACTTT-GATTTT
1 TTTTTTTTAAAAAGAGAAAGTTTAGATTTT
87325490 GCAAAAAAAA
Statistics
Matches: 158, Mismatches: 12, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
143 6 0.04
144 9 0.06
145 14 0.09
146 90 0.57
147 3 0.02
148 32 0.20
149 4 0.03
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.43
Consensus pattern (148 bp):
TTTTTTTTAAAAAGAGAAAGTTTAGATTTTTAAAAATAGAAATATATTTTTTAGTCATTTTAAAG
GAAAAGTTTAAAATTTTAAAACAAAACTTTGATATTTTCCAACTATTTCGAAATAAAATTTTAAT
TTTTAAAAAAAGTAATAA
Found at i:87328859 original size:20 final size:21
Alignment explanation
Indices: 87328834--87328879 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
87328824 AAAAATATAA
87328834 ATTTTGGAATTTTT-ATAAA-T
1 ATTTTGGAATTTTTGA-AAATT
87328854 ATTTT-GAATTTTTGAAAATT
1 ATTTTGGAATTTTTGAAAATT
87328874 ATTTTG
1 ATTTTG
87328880 ATTTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.57
Consensus pattern (21 bp):
ATTTTGGAATTTTTGAAAATT
Found at i:87328880 original size:20 final size:19
Alignment explanation
Indices: 87328829--87328885 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
87328819 TTTTAAAAAA
*
87328829 TATAAAT-TTTGGAATTTT
1 TATAAATATTTTGAATTTT
87328847 TATAAATATTTTGAATTTT
1 TATAAATATTTTGAATTTT
87328866 TGA-AAATTATTTTG-ATTTT
1 T-ATAAA-TATTTTGAATTTT
87328885 T
1 T
87328886 TTTTTGTAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
18 7 0.20
19 20 0.57
20 8 0.23
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:87330679 original size:60 final size:60
Alignment explanation
Indices: 87330597--87330731 Score: 168
Period size: 60 Copynumber: 2.2 Consensus size: 60
87330587 GTGTTAACTG
*
87330597 GGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCT-TTAC-AGTATC-AGAGTATATTA
1 GGCC-TAGCCCATATCAATATTAATCTAGGCCATAGCCCTATTACAAG--TCGAGA-TATATTA
* * *
87330658 GGCCTAGCCCATATCAGTATTAATCTAGGCCGTAGCCCTATTACAAGTCGAGATATATTG
1 GGCCTAGCCCATATCAATATTAATCTAGGCCATAGCCCTATTACAAGTCGAGATATATTA
*
87330718 GGCCTTGCCCATAT
1 GGCCTAGCCCATAT
87330732 TAACACAGTT
Statistics
Matches: 66, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
60 53 0.80
61 11 0.17
62 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (60 bp):
GGCCTAGCCCATATCAATATTAATCTAGGCCATAGCCCTATTACAAGTCGAGATATATTA
Found at i:87331392 original size:8 final size:8
Alignment explanation
Indices: 87331379--87331403 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
87331369 TTCACAAATG
87331379 TCGGCTTT
1 TCGGCTTT
87331387 TCGGCTTT
1 TCGGCTTT
87331395 TCGGCTTT
1 TCGGCTTT
87331403 T
1 T
87331404 GCCGATCTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.24, G:0.24, T:0.52
Consensus pattern (8 bp):
TCGGCTTT
Found at i:87333039 original size:27 final size:27
Alignment explanation
Indices: 87333009--87333062 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
87332999 ATTACTAGAC
*
87333009 TAAACATA-CTAAATAATAATAATTTCA
1 TAAACATATCT-AATAATAAAAATTTCA
87333036 TAAACATATCTAATAATAAAAATTTCA
1 TAAACATATCTAATAATAAAAATTTCA
87333063 AATACCAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 23 0.92
28 2 0.08
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (27 bp):
TAAACATATCTAATAATAAAAATTTCA
Found at i:87333431 original size:13 final size:13
Alignment explanation
Indices: 87333413--87333455 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
87333403 AAATTTTTTC
87333413 CTAAATATTATCA
1 CTAAATATTATCA
87333426 CTAAATA--ATC-
1 CTAAATATTATCA
87333436 CTAAATATTATCA
1 CTAAATATTATCA
87333449 CTAAATA
1 CTAAATA
87333456 ATTCAAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 7 0.26
11 3 0.11
12 3 0.11
13 14 0.52
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:87333437 original size:23 final size:23
Alignment explanation
Indices: 87333411--87333457 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
87333401 CTAAATTTTT
87333411 TCCTAAATATTATCACTAAATAA
1 TCCTAAATATTATCACTAAATAA
87333434 TCCTAAATATTATCACTAAATAA
1 TCCTAAATATTATCACTAAATAA
87333457 T
1 T
87333458 TCAAAATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (23 bp):
TCCTAAATATTATCACTAAATAA
Found at i:87333464 original size:23 final size:23
Alignment explanation
Indices: 87333415--87333464 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
87333405 ATTTTTTCCT
*
87333415 AAATATTATCACTAAATAATCCT
1 AAATATTATCACTAAATAATCCA
*
87333438 AAATATTATCACTAAATAATTCA
1 AAATATTATCACTAAATAATCCA
87333461 AAAT
1 AAAT
87333465 TTAAAAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (23 bp):
AAATATTATCACTAAATAATCCA
Found at i:87335803 original size:27 final size:27
Alignment explanation
Indices: 87335765--87335826 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
87335755 TGTAAAAGTC
*
87335765 TATAGGAAAAATTAGCTTATTTACCTT
1 TATAGGAAAAATTAACTTATTTACCTT
87335792 TATAGGAAAAATTAACTTATTTACCTT
1 TATAGGAAAAATTAACTTATTTACCTT
87335819 TATGAGGA
1 TAT-AGGA
87335827 CATCTTGCAG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 29 0.88
28 4 0.12
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.39
Consensus pattern (27 bp):
TATAGGAAAAATTAACTTATTTACCTT
Found at i:87336280 original size:27 final size:27
Alignment explanation
Indices: 87336242--87336294 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
87336232 TTCTAGGGTT
* *
87336242 TGGGGGAGGTACCGCCAATGATTTATA
1 TGGGGGAGGTACCACAAATGATTTATA
87336269 TGGGGGAGGTACCACAAATGATTTAT
1 TGGGGGAGGTACCACAAATGATTTAT
87336295 GTGGTGCGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.28, C:0.13, G:0.32, T:0.26
Consensus pattern (27 bp):
TGGGGGAGGTACCACAAATGATTTATA
Found at i:87338379 original size:48 final size:48
Alignment explanation
Indices: 87338255--87338529 Score: 264
Period size: 48 Copynumber: 5.7 Consensus size: 48
87338245 TGATATGTGT
*
87338255 GCCAGTGTAAGACCACGTCTGGGACATGGCATCGGCCACAATATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGA
** * * * * * * *** *
87338303 TTCAGTGTAAGAACATATTTGGAACATGGCATCAGCGATGTTGTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGA
* ** * *
87338351 GCCAGTGTAAGACCATGTCTGGGGCATGGCATCGG-CATTGATATGTGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CAATATGAGA
* * *
87338399 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGA
* * * * *
87338447 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGA
* * * *
87338495 GCCAATGTAAAACCATGTTTGGAACATGGCATCGG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
87338530 TAACTCACTC
Statistics
Matches: 180, Mismatches: 45, Indels: 4
0.79 0.20 0.02
Matches are distributed among these distances:
47 1 0.01
48 177 0.98
49 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGA
Found at i:87338426 original size:96 final size:95
Alignment explanation
Indices: 87338255--87338528 Score: 300
Period size: 96 Copynumber: 2.9 Consensus size: 95
87338245 TGATATGTGT
* * * ** *
87338255 GCCAGTGTAAGACCACGTCTGGGACATGGCATCGGCCA-CAATATGAGATTCAGTGTAAGAACAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCGATATGTGGCT-AGTGTAAGACCAT
* * ** *
87338319 ATTTGGAACATGGCATC-AGCGATGTTGTGAGA
64 GTTTGGAACATGGCATCGA-CCACATTATGAGA
* *
87338351 GCCAGTGTAAGACCATGTCTGGGGCATGGCATCGGCATTGATATGTGCGCTAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTG-GCTAGTGTAAGACCATG
* *
87338416 TCTGGGACATGGCATCGACCACATTATGAGA
65 TTTGGAACATGGCATCGACCACATTATGAGA
* * * * * *
87338447 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGAGCCAATGTAAAACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTG-GCTAGTGTAAGACCATG
87338512 TTTGGAACATGGCATCG
65 TTTGGAACATGGCATCG
87338529 GTAACTCACT
Statistics
Matches: 149, Mismatches: 26, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
95 2 0.01
96 145 0.97
97 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (95 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGGCTAGTGTAAGACCATGT
TTGGAACATGGCATCGACCACATTATGAGA
Found at i:87338510 original size:144 final size:144
Alignment explanation
Indices: 87338245--87338529 Score: 349
Period size: 144 Copynumber: 2.0 Consensus size: 144
87338235 GACATTTGGA
* * *
87338245 TGATATGTGTGCCAGTGTAAGACCACGTCTGGGACATGGCATCGGCCACAATATGAGATTCAGTG
1 TGATATGTGCGCCAGTGTAAGACCACGTCTGGGACATGGCATCGACCACAATATGAGACTCAGTG
* *** * * **
87338310 TAAGAACATATTTGGAACATGGCATCAGCGATGTTGTGAGAGCCAGTGTAAGACCATGTCTGGGG
66 TAAGAACATATCTGGAACATGGCATCAGCGATGACATGAGAGCCAATGTAAAACCATGTCTGGAA
87338375 CATGGCATCGGCAT
131 CATGGCATCGGCAT
* * *
87338389 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCT-AGT
1 TGATATGTGCGCCAGTGTAAGACCACGTCTGGGACATGGCATCGACCACAATATGAGA-CTCAGT
* * * * * * *
87338453 GTAAGACCATGTCTGGGACATGGCATCGGC-CTCGACATGTGAGCCAATGTAAAACCATGTTTGG
65 GTAAGAACATATCTGGAACATGGCATCAGCGAT-GACATGAGAGCCAATGTAAAACCATGTCTGG
87338517 AACATGGCATCGG
129 AACATGGCATCGG
87338530 TAACTCACTC
Statistics
Matches: 118, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
143 1 0.01
144 116 0.98
145 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (144 bp):
TGATATGTGCGCCAGTGTAAGACCACGTCTGGGACATGGCATCGACCACAATATGAGACTCAGTG
TAAGAACATATCTGGAACATGGCATCAGCGATGACATGAGAGCCAATGTAAAACCATGTCTGGAA
CATGGCATCGGCAT
Found at i:87344532 original size:48 final size:48
Alignment explanation
Indices: 87344446--87344731 Score: 310
Period size: 48 Copynumber: 6.0 Consensus size: 48
87344436 TGACATTTGG
* * *
87344446 ATGATATGTGTGCCAGTGTAAGACCACGTCTGGGACATGGCATCGGCC
1 ATGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC
** * * * *
87344494 ATGATATGAGATTCAGTGTAAGAACATGTTTGGAACATGGCATCGGCG
1 ATGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC
* *
87344542 ATGTTGTGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-C
1 ATGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC
* *
87344589 ATTGATATGTACA-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC
1 A-TGATATG-AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC
* *
87344638 A-CATTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC
1 ATGA-TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC
* * * * * * *
87344686 -TCGACATGTGAGCCAATGTAAAACCATGTTTGGAACATGGCGTCGG
1 AT-GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
87344732 TAACTCACTC
Statistics
Matches: 199, Mismatches: 32, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
47 4 0.02
48 190 0.95
49 5 0.03
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (48 bp):
ATGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC
Found at i:87344712 original size:144 final size:144
Alignment explanation
Indices: 87344460--87344731 Score: 352
Period size: 144 Copynumber: 1.9 Consensus size: 144
87344450 TATGTGTGCC
* * *
87344460 AGTGTAAGACCACGTCTGGGACATGGCATCGGCCATGATATGAGATTCAGTGTAAGAACATGTTT
1 AGTGTAAGACCACGTCTGGGACATGGCATCGGCCATCATATGAGACTCAGTGTAAGAACATGTCT
*** * * *
87344525 GGAACATGGCATCGGCGATGTTGTGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
66 GGAACATGGCATCGGCGATGACATGAGAGCCAATGTAAAACCATGTCTGGAACATGGCATCGGCA
87344590 TTGATATGTACACT
131 TTGATATGTACACT
* *
87344604 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CATTATGAGAGCT-AGTGTAAGACCATGT
1 AGTGTAAGACCACGTCTGGGACATGGCATCGGCCATCA-TATGAGA-CTCAGTGTAAGAACATGT
* * * * *
87344667 CTGGGACATGGCATCGGC-CTCGACATGTGAGCCAATGTAAAACCATGTTTGGAACATGGCGTCG
64 CTGGAACATGGCATCGGCGAT-GACATGAGAGCCAATGTAAAACCATGTCTGGAACATGGCATCG
87344731 G
128 G
87344732 TAACTCACTC
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
143 2 0.02
144 106 0.97
145 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (144 bp):
AGTGTAAGACCACGTCTGGGACATGGCATCGGCCATCATATGAGACTCAGTGTAAGAACATGTCT
GGAACATGGCATCGGCGATGACATGAGAGCCAATGTAAAACCATGTCTGGAACATGGCATCGGCA
TTGATATGTACACT
Found at i:87347069 original size:5 final size:5
Alignment explanation
Indices: 87347059--87347085 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
87347049 TATGAAGTGT
87347059 AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AA
87347086 ATATATTCGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:87347992 original size:13 final size:13
Alignment explanation
Indices: 87347974--87348040 Score: 65
Period size: 13 Copynumber: 5.6 Consensus size: 13
87347964 AAATTTTTCT
87347974 TAAATATTATCAC
1 TAAATATTATCAC
*
87347987 TAAATA--ATC-T
1 TAAATATTATCAC
87347997 TAAATATTATCAC
1 TAAATATTATCAC
*
87348010 TAAATA--AT-TC
1 TAAATATTATCAC
*
87348020 TAAATAATATCAC
1 TAAATATTATCAC
87348033 TAAATATT
1 TAAATATT
87348041 TCAAAATTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
10 13 0.30
11 5 0.12
12 5 0.12
13 20 0.47
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TAAATATTATCAC
Found at i:87347999 original size:23 final size:23
Alignment explanation
Indices: 87347971--87348038 Score: 111
Period size: 23 Copynumber: 3.0 Consensus size: 23
87347961 GCTAAATTTT
87347971 TCTTAAATATTATCACTAAATAA
1 TCTTAAATATTATCACTAAATAA
87347994 TCTTAAATATTATCACTAAATAA
1 TCTTAAATATTATCACTAAATAA
*
87348017 T-TCTAAATAATATCACTAAATA
1 TCT-TAAATATTATCACTAAATA
87348039 TTTCAAAATT
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
22 1 0.02
23 42 0.98
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (23 bp):
TCTTAAATATTATCACTAAATAA
Found at i:87368601 original size:30 final size:29
Alignment explanation
Indices: 87368567--87368631 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
87368557 ATAATCATAC
*
87368567 TAGTCCA-TATATTTCATTTATTTTT-CATTT
1 TAGTCCATTA-ATTT-A-TTATTTTTGCAATT
*
87368597 TAGTCCCTTAATTTATTATTTTTGCAATT
1 TAGTCCATTAATTTATTATTTTTGCAATT
87368626 TAGTCC
1 TAGTCC
87368632 TAATTACTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 8 0.26
29 11 0.35
30 10 0.32
31 2 0.06
ACGTcount: A:0.23, C:0.15, G:0.06, T:0.55
Consensus pattern (29 bp):
TAGTCCATTAATTTATTATTTTTGCAATT
Found at i:87374731 original size:40 final size:40
Alignment explanation
Indices: 87374676--87374823 Score: 269
Period size: 40 Copynumber: 3.7 Consensus size: 40
87374666 GAGCATTGGA
87374676 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
87374716 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
87374756 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
87374796 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
87374824 ATGTGTTTGC
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:87375101 original size:35 final size:35
Alignment explanation
Indices: 87375055--87375124 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
87375045 TGAAGTGTGA
87375055 AGTAAGTATGATTATGAGAATGTGTGTTAATAAAG
1 AGTAAGTATGATTATGAGAATGTGTGTTAATAAAG
87375090 AGTAAGTATGATTATGAGAATGTGTGTTAATAAAG
1 AGTAAGTATGATTATGAGAATGTGTGTTAATAAAG
87375125 TGACTTAGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.40, C:0.00, G:0.26, T:0.34
Consensus pattern (35 bp):
AGTAAGTATGATTATGAGAATGTGTGTTAATAAAG
Found at i:87383008 original size:40 final size:40
Alignment explanation
Indices: 87382953--87383150 Score: 319
Period size: 40 Copynumber: 5.0 Consensus size: 40
87382943 GCATTTGTAT
*
87382953 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
87382993 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
87383033 ATATATCC-GGCTAAGACCCGCA-GCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* * *
87383071 ATATATCCGGGCTAAGACCCAAAGGCAATTGTGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
87383111 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
87383151 TTGCCGGTAA
Statistics
Matches: 146, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
38 24 0.16
39 26 0.18
40 96 0.66
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
Found at i:87383068 original size:78 final size:80
Alignment explanation
Indices: 87382953--87383148 Score: 315
Period size: 78 Copynumber: 2.5 Consensus size: 80
87382943 GCATTTGTAT
**
87382953 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCGATATATCCGGGCTAAGACCCGCAGG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCGATATATCCGGGCTAAGACCCAAAGG
* *
87383018 CATTTGTGCGAGTTG
66 CAATTGTGCAAGTTG
* *
87383033 ATATATCC-GGCTAAGACCCGCA-GCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCAAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCGATATATCCGGGCTAAGACCCAAAGG
87383096 CAATTGTGCAAGTTG
66 CAATTGTGCAAGTTG
*
87383111 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
87383149 TGTTGCCGGT
Statistics
Matches: 106, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
78 59 0.56
79 26 0.25
80 21 0.20
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.23
Consensus pattern (80 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCGATATATCCGGGCTAAGACCCAAAGG
CAATTGTGCAAGTTG
Found at i:87391383 original size:40 final size:40
Alignment explanation
Indices: 87391328--87391561 Score: 378
Period size: 40 Copynumber: 5.8 Consensus size: 40
87391318 GCATTTGTAT
*
87391328 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
87391368 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
87391408 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
87391448 ATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
87391488 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* ** *
87391528 CTATGCCCGGGCTAAGACCCGAAGGCAATTGTGC
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
87391562 TTGTGGTAAT
Statistics
Matches: 181, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 181 1.00
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
Found at i:87396415 original size:37 final size:37
Alignment explanation
Indices: 87396371--87396443 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
87396361 ATCATCCTTT
87396371 TTTTCATTGTTTTCACACAAAGAATCCATTTATCCTC
1 TTTTCATTGTTTTCACACAAAGAATCCATTTATCCTC
* *
87396408 TTTTCATTGTTTTCACATAGAGAATCCATTTATCCT
1 TTTTCATTGTTTTCACACAAAGAATCCATTTATCCT
87396444 AAAGCATATG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.45
Consensus pattern (37 bp):
TTTTCATTGTTTTCACACAAAGAATCCATTTATCCTC
Found at i:87397337 original size:71 final size:67
Alignment explanation
Indices: 87397259--87397399 Score: 183
Period size: 67 Copynumber: 2.0 Consensus size: 67
87397249 CACCAGATCT
* * * *
87397259 AGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGTAGCGAG
1 AGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAGCGAG
87397324 GCTGCC
62 GCTGCC
* * *
87397330 AGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGTTG
1 AGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCTG
87397395 CC
66 CC
87397397 AGA
1 AGA
87397400 ACGCTTCCTC
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
67 39 0.62
71 24 0.38
ACGTcount: A:0.30, C:0.21, G:0.29, T:0.20
Consensus pattern (67 bp):
AGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCTG
CC
Found at i:87397377 original size:27 final size:26
Alignment explanation
Indices: 87397329--87397380 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
87397319 GCGAGGCTGC
*
87397329 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
87397355 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
87397381 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:87397686 original size:19 final size:19
Alignment explanation
Indices: 87397643--87397688 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
87397633 TGGGCCCGTT
*
87397643 GGCCCATTGGCTCGTTTTC
1 GGCCCATTGGCCCGTTTTC
**
87397662 AACCCATTGGCCCGTTTTC
1 GGCCCATTGGCCCGTTTTC
87397681 GGCCCATT
1 GGCCCATT
87397689 AAGCCCAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.11, C:0.35, G:0.22, T:0.33
Consensus pattern (19 bp):
GGCCCATTGGCCCGTTTTC
Found at i:87400881 original size:49 final size:52
Alignment explanation
Indices: 87400809--87400975 Score: 184
Period size: 52 Copynumber: 3.3 Consensus size: 52
87400799 ACTAGTGACT
*
87400809 CAAGTGTAGTACTATCTGAAGGCCACTTTGA-GAAG-AGATAG-GTTGGTCA
1 CAAGTGTGGTACTATCTGAAGGCCACTTTGATGAAGAAGATAGCGTTGGTCA
* * *
87400858 CAAGTGTGGTACTATGTGAAGGCCA-TTTTATGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATCTGAAGGCCACTTTGATGAAG-AAGATAGCGTTGGTCA
* * * * *
87400910 CATGTGTGGTACTATCTGAAGGCCACTTTG-TGAAAAAGGTAGC-TTTGACTA
1 CAAGTGTGGTACTATCTGAAGGCCACTTTGATGAAGAAGATAGCGTTGGTC-A
*
87400961 CAAGTATGGTACTAT
1 CAAGTGTGGTACTAT
87400976 GTACAGGCTA
Statistics
Matches: 99, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
48 4 0.04
49 27 0.27
50 4 0.04
51 27 0.27
52 34 0.34
53 3 0.03
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (52 bp):
CAAGTGTGGTACTATCTGAAGGCCACTTTGATGAAGAAGATAGCGTTGGTCA
Found at i:87400974 original size:51 final size:51
Alignment explanation
Indices: 87400804--87400975 Score: 181
Period size: 51 Copynumber: 3.4 Consensus size: 51
87400794 ATGTCACTAG
* * * *
87400804 TGACT-CAAGTGTAGTACTATCTGAAGGCCACTTTGAG-AAGAGATAGGTT
1 TGACTACAAGTGTGGTACTATCTGAAGGCCACTTTGTGAAAAAGATAGCTT
* * * * *
87400853 GGTC-ACAAGTGTGGTACTATGTGAAGGCCATTTTATGAAGAAAGATAGCTT
1 TGACTACAAGTGTGGTACTATCTGAAGGCCACTTTGTGAA-AAAGATAGCTT
* * *
87400904 TG-GTCACATGTGTGGTACTATCTGAAGGCCACTTTGTGAAAAAGGTAGCTT
1 TGACT-ACAAGTGTGGTACTATCTGAAGGCCACTTTGTGAAAAAGATAGCTT
*
87400955 TGACTACAAGTATGGTACTAT
1 TGACTACAAGTGTGGTACTAT
87400976 GTACAGGCTA
Statistics
Matches: 98, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
49 29 0.30
50 1 0.01
51 36 0.37
52 32 0.33
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (51 bp):
TGACTACAAGTGTGGTACTATCTGAAGGCCACTTTGTGAAAAAGATAGCTT
Found at i:87406198 original size:25 final size:25
Alignment explanation
Indices: 87406164--87406213 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
87406154 GTTAATATAC
87406164 GTGGGTGTTATGTAAGTCCTAAGCT
1 GTGGGTGTTATGTAAGTCCTAAGCT
87406189 GTGGGTGTTATGTAAGTCCTAAGCT
1 GTGGGTGTTATGTAAGTCCTAAGCT
87406214 AACTCTTGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.12, G:0.32, T:0.36
Consensus pattern (25 bp):
GTGGGTGTTATGTAAGTCCTAAGCT
Found at i:87412466 original size:22 final size:21
Alignment explanation
Indices: 87412433--87412477 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
87412423 TTGACAAAAA
87412433 AACAGAAAAAATAAATAAAGC
1 AACAGAAAAAATAAATAAAGC
* *
87412454 AACATAAATAAATAATTAAAGC
1 AACAGAAA-AAATAAATAAAGC
87412476 AA
1 AA
87412478 AACTTGTCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.69, C:0.09, G:0.07, T:0.16
Consensus pattern (21 bp):
AACAGAAAAAATAAATAAAGC
Found at i:87415439 original size:21 final size:21
Alignment explanation
Indices: 87415397--87415439 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
87415387 GTGTTGTGTC
*
87415397 TAATTTATCTCATATTTCATA
1 TAATTTATCTCATAATTCATA
*
87415418 TAATTTGTCATCATAATT-ATA
1 TAATTTATC-TCATAATTCATA
87415439 T
1 T
87415440 TTATTAAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.35, C:0.12, G:0.02, T:0.51
Consensus pattern (21 bp):
TAATTTATCTCATAATTCATA
Found at i:87431585 original size:25 final size:26
Alignment explanation
Indices: 87431557--87431609 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
87431547 GCCTAGCCTC
87431557 TTTTAATAAA-TGGGGCAAAGCCCTT
1 TTTTAATAAACTGGGGCAAAGCCCTT
*
87431582 TTTTAGTAAACTGGGGCAAAGCCCTT
1 TTTTAATAAACTGGGGCAAAGCCCTT
87431608 TT
1 TT
87431610 CGCACTTCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.35
26 17 0.65
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (26 bp):
TTTTAATAAACTGGGGCAAAGCCCTT
Found at i:87431684 original size:21 final size:21
Alignment explanation
Indices: 87431657--87431717 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
87431647 TATAATGAGT
87431657 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
87431678 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
87431699 ATATCAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
87431718 ATAACAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:87431716 original size:10 final size:10
Alignment explanation
Indices: 87431657--87431717 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
87431647 TATAATGAGT
87431657 ATATCATAG-C
1 ATATCAT-GTC
87431667 ATATCATGTGC
1 ATATCATGT-C
* **
87431678 ATCTCATAAC
1 ATATCATGTC
87431688 ATATCATGTGC
1 ATATCATGT-C
87431699 ATATCATGTC
1 ATATCATGTC
87431709 ATATCATGT
1 ATATCATGT
87431718 ATAACAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:87437756 original size:22 final size:22
Alignment explanation
Indices: 87437728--87437773 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
87437718 ATAATTTTAT
87437728 TAAATGATATAACGTATGACAG
1 TAAATGATATAACGTATGACAG
*
87437750 TAAATGATATAATGTATGACAG
1 TAAATGATATAACGTATGACAG
87437772 TA
1 TA
87437774 TGATCTTGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.46, C:0.07, G:0.17, T:0.30
Consensus pattern (22 bp):
TAAATGATATAACGTATGACAG
Found at i:87437844 original size:39 final size:39
Alignment explanation
Indices: 87437795--87437909 Score: 158
Period size: 39 Copynumber: 2.9 Consensus size: 39
87437785 AAAATGGGAT
* * *
87437795 ACTGATTCTACTAAAAGTATGATCAATTGAGCTATACCC
1 ACTGATTCTACTGAAAGTATGCTCAATTGAGCCATACCC
* * * *
87437834 ACTGAATCTACTGAAAGTATGCTCAATCGAACCATACCT
1 ACTGATTCTACTGAAAGTATGCTCAATTGAGCCATACCC
*
87437873 ACTGATTCTACTGAAAGTATGCTCAAGTGAGCCATAC
1 ACTGATTCTACTGAAAGTATGCTCAATTGAGCCATAC
87437910 GGATTCTGAC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 65 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.28
Consensus pattern (39 bp):
ACTGATTCTACTGAAAGTATGCTCAATTGAGCCATACCC
Found at i:87438007 original size:27 final size:27
Alignment explanation
Indices: 87437969--87438022 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
87437959 TCGATTTCTT
*
87437969 TGCTGTCCATCAGGCCCTGAATAACAA
1 TGCTGTCCATCAAGCCCTGAATAACAA
87437996 TGCTGTCCATCAAGCCCTGAATAACAA
1 TGCTGTCCATCAAGCCCTGAATAACAA
87438023 CTCTGAACCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (27 bp):
TGCTGTCCATCAAGCCCTGAATAACAA
Found at i:87452382 original size:18 final size:18
Alignment explanation
Indices: 87452359--87452397 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
87452349 TAAAGAAGAT
* *
87452359 AAATAAAGATAATAGTAA
1 AAATAAAAATAATAATAA
*
87452377 AAATAAAAATGATAATAA
1 AAATAAAAATAATAATAA
87452395 AAA
1 AAA
87452398 AAGTTCTTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.21
Consensus pattern (18 bp):
AAATAAAAATAATAATAA
Found at i:87452399 original size:21 final size:22
Alignment explanation
Indices: 87452357--87452399 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
87452347 CTTAAAGAAG
**
87452357 ATAAATAAAGATAATAGTAAAA
1 ATAAATAAAGATAATAAAAAAA
*
87452379 ATAAA-AATGATAATAAAAAAA
1 ATAAATAAAGATAATAAAAAAA
87452400 GTTCTTAAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (22 bp):
ATAAATAAAGATAATAAAAAAA
Found at i:87457838 original size:61 final size:61
Alignment explanation
Indices: 87457768--87457887 Score: 231
Period size: 61 Copynumber: 2.0 Consensus size: 61
87457758 GGAAAACTCG
87457768 ATTGATTAAGACAATACCCAAGGAAAAATCCACCTAGACTTCACTTATTATTTAACTCTCA
1 ATTGATTAAGACAATACCCAAGGAAAAATCCACCTAGACTTCACTTATTATTTAACTCTCA
*
87457829 ATTGATTAAGACAATACCCAAGGAAAAATCCACCTAGACTTCACTTGTTATTTAACTCT
1 ATTGATTAAGACAATACCCAAGGAAAAATCCACCTAGACTTCACTTATTATTTAACTCT
87457888 GAATCAGACG
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (61 bp):
ATTGATTAAGACAATACCCAAGGAAAAATCCACCTAGACTTCACTTATTATTTAACTCTCA
Found at i:87467235 original size:37 final size:37
Alignment explanation
Indices: 87467176--87467284 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
87467166 AGCTCAGACG
* *
87467176 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
87467213 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
87467250 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
87467285 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:87467554 original size:48 final size:48
Alignment explanation
Indices: 87467430--87467614 Score: 309
Period size: 48 Copynumber: 3.8 Consensus size: 48
87467420 GCACATCGCC
*
87467430 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
87467480 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
87467528 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
87467576 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
87467615 TGCATGTTCA
Statistics
Matches: 128, Mismatches: 5, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
48 84 0.66
49 2 0.02
50 42 0.33
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:87467619 original size:98 final size:97
Alignment explanation
Indices: 87467430--87467613 Score: 318
Period size: 98 Copynumber: 1.9 Consensus size: 97
87467420 GCACATCGCC
*
87467430 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATT
87467495 GACCATTCGGCTTTACCACATATGCATATCTCA
65 GACCATTCGGCTTTACCACATATGCATATCTCA
*
87467528 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATACATATTTCACATT-
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
87467591 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCGGCTTTACCACATAT
87467614 ATGCATGTTC
Statistics
Matches: 83, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
95 1 0.01
96 36 0.43
98 46 0.55
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCGGCTTTACCACATATGCATATCTCA
Found at i:87467720 original size:47 final size:47
Alignment explanation
Indices: 87467584--87467730 Score: 195
Period size: 47 Copynumber: 3.1 Consensus size: 47
87467574 CATACATATT
* * * *
87467584 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
87467631 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
87467678 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
87467725 TCACAT
1 TCACAT
87467731 AAAATCCTAA
Statistics
Matches: 86, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 86 1.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:87471902 original size:40 final size:40
Alignment explanation
Indices: 87471854--87472139 Score: 455
Period size: 40 Copynumber: 7.2 Consensus size: 40
87471844 TCGAATACAC
* * * *
87471854 ATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* * * * *
87471894 AACACCAGCACAAATGCTCTTCGGAACTTAGCCCGGATAC
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* *
87471934 ATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATAC
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
87471974 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAC
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
87472014 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
87472054 ATGACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
87472094 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
87472134 ATCACT
1 ATCACT
87472140 CTCAATTCTC
Statistics
Matches: 230, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 230 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
Found at i:87473467 original size:37 final size:37
Alignment explanation
Indices: 87473408--87473516 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
87473398 AGCTCAGACG
* *
87473408 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
87473445 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
87473482 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
87473517 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:87473780 original size:100 final size:96
Alignment explanation
Indices: 87473662--87473847 Score: 293
Period size: 100 Copynumber: 1.9 Consensus size: 96
87473652 GCACATCGCC
*
87473662 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCACA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC----ATACATATTTCACA
87473727 TT-GACCATTCGACTTTACCACATATGCATATCTCA
62 TTAG-CCATTCGACTTTACCACATATGCATATCTCA
*
87473762 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
87473827 CCATTCGGCTTTACCACATAT
66 CCATTCGACTTTACCACATAT
87473848 ATGCATGTTC
Statistics
Matches: 82, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
96 35 0.43
97 1 0.01
100 46 0.56
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (96 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGACTTTACCACATATGCATATCTCA
Found at i:87473791 original size:48 final size:48
Alignment explanation
Indices: 87473662--87473848 Score: 286
Period size: 48 Copynumber: 3.8 Consensus size: 48
87473652 GCACATCGCC
*
87473662 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* * *
87473714 TATATATTTCACATT-GACCATTCGACTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
87473762 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
87473810 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
87473849 TGCATGTTCA
Statistics
Matches: 126, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
48 83 0.66
49 1 0.01
51 1 0.01
52 41 0.33
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:87473960 original size:47 final size:47
Alignment explanation
Indices: 87473818--87473964 Score: 177
Period size: 47 Copynumber: 3.1 Consensus size: 47
87473808 CATACATATT
* * * *
87473818 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCAAATTCA
* * * *
87473865 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCAAATTCA
* * ** *
87473912 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCAAAGTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCAAATTCA
87473959 TCACAT
1 TCACAT
87473965 AAAATCCTAA
Statistics
Matches: 84, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 84 1.00
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCAAATTCA
Found at i:87481355 original size:40 final size:40
Alignment explanation
Indices: 87481125--87481356 Score: 324
Period size: 40 Copynumber: 5.8 Consensus size: 40
87481115 CATTTGAATG
* * *
87481125 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* * * *
87481165 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
87481205 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
87481245 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
87481285 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
87481325 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
87481357 TTGTGGTTAT
Statistics
Matches: 182, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
40 179 0.98
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:87483188 original size:24 final size:24
Alignment explanation
Indices: 87483156--87483205 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
87483146 GACCGGAGTA
87483156 CAAATTGCACCAAGAGTCATAATC
1 CAAATTGCACCAAGAGTCATAATC
87483180 CAAATTGCACCAAGAGTCATAATC
1 CAAATTGCACCAAGAGTCATAATC
87483204 CA
1 CA
87483206 GAAACCTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.42, C:0.26, G:0.12, T:0.20
Consensus pattern (24 bp):
CAAATTGCACCAAGAGTCATAATC
Found at i:87484431 original size:13 final size:13
Alignment explanation
Indices: 87484415--87484447 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
87484405 TTTGATTAAA
*
87484415 TTAGTTAATTAGT
1 TTAGATAATTAGT
87484428 TTAGATAATTAGT
1 TTAGATAATTAGT
87484441 TTA-ATAA
1 TTAGATAA
87484448 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:87484738 original size:5 final size:5
Alignment explanation
Indices: 87484728--87484752 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
87484718 TTTTTCTTGC
87484728 AATTT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT
87484753 TACTATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:87488282 original size:20 final size:21
Alignment explanation
Indices: 87488253--87488294 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
87488243 CCTCTCCGCG
87488253 TCACACGCCCGTGT-TCGCCA
1 TCACACGCCCGTGTGTCGCCA
*
87488273 TCACATGCCCGTGTGTCGCCA
1 TCACACGCCCGTGTGTCGCCA
87488294 T
1 T
87488295 ACAGCAGCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.14, C:0.40, G:0.21, T:0.24
Consensus pattern (21 bp):
TCACACGCCCGTGTGTCGCCA
Found at i:87489570 original size:6 final size:6
Alignment explanation
Indices: 87489559--87489648 Score: 87
Period size: 6 Copynumber: 15.2 Consensus size: 6
87489549 ATCCTCCTAC
*
87489559 TTTATT TTTATT TTTATT TTTA-- TTTATT CTTATT TTTA-T TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
* * * * *
87489604 TTATTTAT TTTATT CTTATT TTTCTT TTTCTT TTTATT TTCATT T
1 TT-TAT-T TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT T
87489649 CAATTTTCTT
Statistics
Matches: 70, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
4 4 0.06
5 5 0.07
6 54 0.77
7 4 0.06
8 3 0.04
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:87489585 original size:22 final size:22
Alignment explanation
Indices: 87489559--87489648 Score: 87
Period size: 22 Copynumber: 4.1 Consensus size: 22
87489549 ATCCTCCTAC
87489559 TTTATTTTTATTTTTATTTTTA
1 TTTATTTTTATTTTTATTTTTA
*
87489581 TTTATTCTTATTTTTA-TTTTA
1 TTTATTTTTATTTTTATTTTTA
* *
87489602 TTT-TATTTA-TTTTATTCTTATT
1 TTTATTTTTATTTTTATT-TT-TA
* * *
87489624 TTTCTTTTTCTTTTTATTTTCA
1 TTTATTTTTATTTTTATTTTTA
87489646 TTT
1 TTT
87489649 CAATTTTCTT
Statistics
Matches: 55, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
19 5 0.09
20 5 0.09
21 10 0.18
22 22 0.40
23 6 0.11
24 7 0.13
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.79
Consensus pattern (22 bp):
TTTATTTTTATTTTTATTTTTA
Found at i:87489586 original size:16 final size:16
Alignment explanation
Indices: 87489565--87489635 Score: 85
Period size: 16 Copynumber: 4.6 Consensus size: 16
87489555 CTACTTTATT
*
87489565 TTTATTTTTATTTTTA
1 TTTATTCTTATTTTTA
87489581 TTTATTCTTATTTTTA
1 TTTATTCTTATTTTTA
*
87489597 TTTTATT-TTATTTAT-
1 -TTTATTCTTATTTTTA
*
87489612 TTTATTCTTATTTTTC
1 TTTATTCTTATTTTTA
87489628 TTT-TTCTT
1 TTTATTCTT
87489636 TTTATTTTCA
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
14 6 0.12
15 12 0.24
16 25 0.51
17 6 0.12
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTATTCTTATTTTTA
Found at i:87491180 original size:40 final size:40
Alignment explanation
Indices: 87491136--87491361 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
87491126 GCTCCTCGTT
* * *
87491136 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
87491176 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
87491216 CAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
87491256 CAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
87491296 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
87491337 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
87491362 CACCATTCAA
Statistics
Matches: 170, Mismatches: 12, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
39 3 0.02
40 154 0.91
41 13 0.08
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:87495709 original size:13 final size:13
Alignment explanation
Indices: 87495693--87495725 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
87495683 TTTGATTAAA
*
87495693 TTAGTTAATTAGT
1 TTAGATAATTAGT
87495706 TTAGATAATTAGT
1 TTAGATAATTAGT
87495719 TTA-ATAA
1 TTAGATAA
87495726 ACAAACCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:87500039 original size:19 final size:19
Alignment explanation
Indices: 87500015--87500055 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
87500005 TTAAATTGTT
*
87500015 TTATAATATGAAATGAATA
1 TTATAATATGAAAGGAATA
*
87500034 TTATAATATTAAAGGAATA
1 TTATAATATGAAAGGAATA
87500053 TTA
1 TTA
87500056 ATATTATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (19 bp):
TTATAATATGAAAGGAATA
Found at i:87502091 original size:39 final size:39
Alignment explanation
Indices: 87502037--87502171 Score: 243
Period size: 39 Copynumber: 3.5 Consensus size: 39
87502027 TTATATGATT
87502037 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
87502076 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
87502115 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTTGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
* *
87502154 TGGTATTATATTCGGGCT
1 TGGTGTTATATCCGGGCT
87502172 TAAAGTCCCG
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 93 1.00
ACGTcount: A:0.18, C:0.23, G:0.30, T:0.29
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
Found at i:87506219 original size:19 final size:19
Alignment explanation
Indices: 87506195--87506235 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
87506185 TTAAATTGTT
*
87506195 TTATAATATGAAATGAATA
1 TTATAATATGAAAGGAATA
*
87506214 TTATAATATTAAAGGAATA
1 TTATAATATGAAAGGAATA
87506233 TTA
1 TTA
87506236 ATATTATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (19 bp):
TTATAATATGAAAGGAATA
Found at i:87508263 original size:39 final size:39
Alignment explanation
Indices: 87508209--87508343 Score: 243
Period size: 39 Copynumber: 3.5 Consensus size: 39
87508199 TTATATGATT
87508209 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
87508248 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
87508287 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTTGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
* *
87508326 TGGTATTATATTCGGGCT
1 TGGTGTTATATCCGGGCT
87508344 TAAAGTCCGC
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 93 1.00
ACGTcount: A:0.18, C:0.23, G:0.30, T:0.29
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
Found at i:87512363 original size:19 final size:19
Alignment explanation
Indices: 87512339--87512379 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
87512329 TTAAATTGTT
*
87512339 TTATAATATGAAATGAATA
1 TTATAATATGAAAGGAATA
*
87512358 TTATAATATTAAAGGAATA
1 TTATAATATGAAAGGAATA
87512377 TTA
1 TTA
87512380 ATATTATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (19 bp):
TTATAATATGAAAGGAATA
Found at i:87514414 original size:39 final size:39
Alignment explanation
Indices: 87514360--87514569 Score: 363
Period size: 39 Copynumber: 5.5 Consensus size: 39
87514350 TTATATGATT
87514360 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
87514399 TGGTGTTATATCCGGGCTAAGCCACGAAGGCA-TCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
87514437 TGGTGTTATATCC-GGCTAAG-CCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
87514474 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
87514513 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTTGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
* *
87514552 TGGTATTATATTCGGGCT
1 TGGTGTTATATCCGGGCT
87514570 TAAAGTCCCG
Statistics
Matches: 163, Mismatches: 5, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
36 9 0.06
37 26 0.16
38 26 0.16
39 102 0.63
ACGTcount: A:0.19, C:0.23, G:0.30, T:0.28
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
Found at i:87518211 original size:10 final size:11
Alignment explanation
Indices: 87518191--87518216 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
87518181 ATAGAAACTA
87518191 TTTTTATTTTT
1 TTTTTATTTTT
87518202 TTTTTATTTTT
1 TTTTTATTTTT
87518213 TTTT
1 TTTT
87518217 GTTGATAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTATTTTT
Found at i:87518630 original size:19 final size:19
Alignment explanation
Indices: 87518606--87518646 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
87518596 TTAAATTGTT
*
87518606 TTATAATATGAAATGAATA
1 TTATAATATGAAAGGAATA
*
87518625 TTATAATATTAAAGGAATA
1 TTATAATATGAAAGGAATA
87518644 TTA
1 TTA
87518647 ATATTATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (19 bp):
TTATAATATGAAAGGAATA
Found at i:87519907 original size:69 final size:69
Alignment explanation
Indices: 87519826--87519971 Score: 283
Period size: 69 Copynumber: 2.1 Consensus size: 69
87519816 CCAAGTAGAT
87519826 TATTATGGTAGTGACGAATGTGATATGTGATAGTAGTAACCAAGTGGATTCAACCATTTAGGTTA
1 TATTATGGTAGTGACGAATGTGATATGTGATAGTAGTAACCAAGTGGATTCAACCATTTAGGTTA
87519891 TATG
66 TATG
87519895 TATTATGGTAGTGACGAATGTGATATGTGATAGTAGTAACCAAGTGGATTCAACCATTTAGGTTA
1 TATTATGGTAGTGACGAATGTGATATGTGATAGTAGTAACCAAGTGGATTCAACCATTTAGGTTA
87519960 TATG
66 TATG
*
87519964 TACTATGG
1 TATTATGG
87519972 CAATGTGGTA
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 76 1.00
ACGTcount: A:0.32, C:0.09, G:0.25, T:0.35
Consensus pattern (69 bp):
TATTATGGTAGTGACGAATGTGATATGTGATAGTAGTAACCAAGTGGATTCAACCATTTAGGTTA
TATG
Found at i:87520756 original size:39 final size:39
Alignment explanation
Indices: 87520700--87520873 Score: 303
Period size: 39 Copynumber: 4.5 Consensus size: 39
87520690 TTATATTATT
*
87520700 TGGTGTTATATCTGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
87520739 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCAATCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
87520778 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
87520817 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTTGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
* *
87520856 TGGTATTATATTCGGGCT
1 TGGTGTTATATCCGGGCT
87520874 TAAAGTCCCG
Statistics
Matches: 129, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 129 1.00
ACGTcount: A:0.18, C:0.23, G:0.30, T:0.28
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
Found at i:87524619 original size:94 final size:94
Alignment explanation
Indices: 87524471--87524667 Score: 286
Period size: 94 Copynumber: 2.1 Consensus size: 94
87524461 CCCATACCCT
* * *
87524471 TGAAGTTGCAGTGGGACGGATTGAAGTTATTATGGCAAATCTTATTTCCCTGAAGTTGTAATGGA
1 TGAAGTTGCAGTAGGACGGATTGAAGTTATTATGGCAAATCTTATCTCCCTGAAGTTGCAATGGA
* *
87524536 GTAGATTAAAGCCACAAACCTTCTCTTCC
66 GTAGATTAAAGCCACAAACCTTATCTCCC
* ** *
87524565 TGAAGTTGCAGTAGGACGGATTGAAGTTATTATGGCGAATCTTATCTCTTTGAAGTTGCAGTGGA
1 TGAAGTTGCAGTAGGACGGATTGAAGTTATTATGGCAAATCTTATCTCCCTGAAGTTGCAATGGA
* * *
87524630 GTAGATTAAAGCTACAGATCTTATCTCCC
66 GTAGATTAAAGCCACAAACCTTATCTCCC
87524659 TGAAGTTGC
1 TGAAGTTGC
87524668 TGTGGAGTAG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
94 91 1.00
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (94 bp):
TGAAGTTGCAGTAGGACGGATTGAAGTTATTATGGCAAATCTTATCTCCCTGAAGTTGCAATGGA
GTAGATTAAAGCCACAAACCTTATCTCCC
Found at i:87524666 original size:44 final size:44
Alignment explanation
Indices: 87524509--87524944 Score: 180
Period size: 44 Copynumber: 9.5 Consensus size: 44
87524499 ATTATGGCAA
* * * * * *
87524509 ATCTTATTTCCCTGAAGTTGTAATGGAGTAGATTAAAGCCACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAG
* * * * * * *
87524553 ACCTTCTCTTCCTGAAGTTGCAGTAGGA-CGGATTGAAGTTATTATGGCG
1 ATCTTATCTCCCTGAAGTTGCAGT-GGAGCAGATTAAAGCTA-CA----G
** *
87524602 AATCTTATCTCTTTGAAGTTGCAGTGGAGTAGATTAAAGCTACAG
1 -ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAG
* * * * *
87524647 ATCTTATCTCCCTGAAGTTGCTGTGGAGTAGATCGAAA-ATCACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-TAAAGCT-ACAG
* * * * * *
87524692 ACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAGCCACTAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC-AG
* * * *
87524737 -TCTTATCTCCTTGAAGTTGCAGTAGAGCAGACTGAAGAC-AGCAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CTA-CAG
* * * * * *
87524781 ATCTTATTTCACTAAAGTTGCAGTCGAACAGATCAAAGCTACGAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC-AG
* * * * * *
87524826 TTATAAATCTTATGTCGCTGAAGTTGAAGTGGAGTAGATTGAAGATA-ACG
1 ------ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA-G
** * * * *
87524876 AATCTTATCTCTTTGAAGTTGCAATAGAGCAGATTAAAGCTATAA
1 -ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAG
* **
87524921 ACCTTATCTTGCTGAAGTTGCAGT
1 ATCTTATCTCCCTGAAGTTGCAGT
87524945 AAAGCAGTGG
Statistics
Matches: 288, Mismatches: 79, Indels: 50
0.69 0.19 0.12
Matches are distributed among these distances:
44 117 0.41
45 105 0.36
46 1 0.00
49 5 0.02
50 29 0.10
51 31 0.11
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAG
Found at i:87524787 original size:89 final size:89
Alignment explanation
Indices: 87524602--87524951 Score: 247
Period size: 89 Copynumber: 3.9 Consensus size: 89
87524592 TATTATGGCG
* * * *
87524602 AATCTTATCTCTTTGAAGTTGCAGTGGAGTAGATTAAAGCTACAGATCTTATCTCCCTGAAGTTG
1 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCCACAGATCTTATCTCCCTGAAGTTG
* * *
87524667 CTGTGGAGTAGATCGAAAATCACA
66 CAGTAGAGCAGATCGAAAATCACA
* * * *
87524691 AACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAGCCACTAG-TCTTATCTCCTTGAAGTT
1 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCCAC-AGATCTTATCTCCCTGAAGTT
*
87524755 GCAGTAGAGCAGA-CTGAAGA-CAGCA
65 GCAGTAGAGCAGATC-GAAAATCA-CA
* * * * * * * * * *
87524780 GATCTTATTTCACTAAAGTTGCAGTCGAACAGATCAAAGCTACGAGTTATAAATCTTATGTCGCT
1 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCCAC-AG------ATCTTATCTCCCT
* * * * * * *
87524845 GAAGTTGAAGTGGAGTAGATTGAAGATAACG
59 GAAGTTGCAGTAGAGCAGATCGAAAATCACA
* * * * * * **
87524876 AATCTTATCTCTTTGAAGTTGCAATAGAGCAGATTAAAGCTATAAACCTTATCTTGCTGAAGTTG
1 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCCACAGATCTTATCTCCCTGAAGTTG
*
87524941 CAGTAAAGCAG
66 CAGTAGAGCAG
87524952 TGGAGCAGTT
Statistics
Matches: 198, Mismatches: 51, Indels: 24
0.73 0.19 0.09
Matches are distributed among these distances:
88 3 0.02
89 127 0.64
90 2 0.01
95 1 0.01
96 64 0.32
97 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (89 bp):
AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCCACAGATCTTATCTCCCTGAAGTTG
CAGTAGAGCAGATCGAAAATCACA
Found at i:87524910 original size:45 final size:44
Alignment explanation
Indices: 87524831--87524951 Score: 100
Period size: 45 Copynumber: 2.7 Consensus size: 44
87524821 ACGAGTTATA
* * * * *
87524831 AATCTTATGTCGCTGAAGTTGAAGTGGAGTAGATTGAAGATAACG
1 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGAT-ACG
* * * * **
87524876 AATCTTATCTCTTTGAAGTTGCAATAGAGCAGATTAAAGCTATA
1 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGATACG
* *
87524920 AACCTTATCT-TGCTGAAGTTGCAGTAAAGCAG
1 AATCTTATCTCT-CTGAAGTTGCAGTAGAGCAG
87524952 TGGAGCAGTT
Statistics
Matches: 60, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
43 1 0.02
44 27 0.45
45 32 0.53
ACGTcount: A:0.34, C:0.13, G:0.22, T:0.31
Consensus pattern (44 bp):
AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGATACG
Found at i:87539982 original size:15 final size:15
Alignment explanation
Indices: 87539962--87540017 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
87539952 TAAATCTTAA
87539962 CCAAATTTCCATTAC
1 CCAAATTTCCATTAC
*
87539977 CCAAATTTTAAATCATTA-
1 CCAAA-TTT---CCATTAC
*
87539995 CCGAATTTCCATTAC
1 CCAAATTTCCATTAC
87540010 CCAAATTT
1 CCAAATTT
87540018 GAAATCATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 10
0.70 0.09 0.22
Matches are distributed among these distances:
14 5 0.16
15 12 0.38
16 3 0.09
17 3 0.09
18 4 0.12
19 5 0.16
ACGTcount: A:0.36, C:0.27, G:0.02, T:0.36
Consensus pattern (15 bp):
CCAAATTTCCATTAC
Found at i:87540002 original size:33 final size:34
Alignment explanation
Indices: 87539952--87540026 Score: 118
Period size: 33 Copynumber: 2.3 Consensus size: 34
87539942 TCAAAGAACA
87539952 TAAATC-TTAACCAAATTTCCATTACCCAAATTT
1 TAAATCATTAACCAAATTTCCATTACCCAAATTT
*
87539985 TAAATCATT-ACCGAATTTCCATTACCCAAATTT
1 TAAATCATTAACCAAATTTCCATTACCCAAATTT
*
87540018 GAAATCATT
1 TAAATCATT
87540027 TTGTCTTATA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
33 37 0.95
34 2 0.05
ACGTcount: A:0.39, C:0.23, G:0.03, T:0.36
Consensus pattern (34 bp):
TAAATCATTAACCAAATTTCCATTACCCAAATTT
Found at i:87541868 original size:30 final size:29
Alignment explanation
Indices: 87541829--87541899 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 29
87541819 TTCCTTATAA
*
87541829 TCATATTAGTCCAT-ATATTTCATT-TATTTT
1 TCATTTTAGTCCATCA-ATTT-ATTAT-TTTT
*
87541859 TCATTTTAGTCCCTCAATTTATTATTTTT
1 TCATTTTAGTCCATCAATTTATTATTTTT
*
87541888 TCAATTTAGTCC
1 TCATTTTAGTCC
87541900 TAATTACTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
29 18 0.50
30 17 0.47
31 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.04, T:0.55
Consensus pattern (29 bp):
TCATTTTAGTCCATCAATTTATTATTTTT
Found at i:87545188 original size:40 final size:40
Alignment explanation
Indices: 87545109--87545225 Score: 140
Period size: 40 Copynumber: 3.0 Consensus size: 40
87545099 GTGAAATATA
87545109 GGTATGGTATCATCCATACTGAGTTGTGATA--T--GTA-
1 GGTATGGTATCATCCATACTGAGTTGTGATATGTAGGTAT
87545144 GGTATGGTATCATCCATACTGAGTTGTGATATGTAGGTAT
1 GGTATGGTATCATCCATACTGAGTTGTGATATGTAGGTAT
** *
87545184 GGTAT--TATCAAATCCATACTGAGTTAAGAAATGTAGGTAT
1 GGTATGGTATC--ATCCATACTGAGTTGTGATATGTAGGTAT
87545224 GG
1 GG
87545226 CATTGTCCAT
Statistics
Matches: 72, Mismatches: 3, Indels: 9
0.86 0.04 0.11
Matches are distributed among these distances:
35 31 0.43
37 1 0.01
38 4 0.06
39 3 0.04
40 33 0.46
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.35
Consensus pattern (40 bp):
GGTATGGTATCATCCATACTGAGTTGTGATATGTAGGTAT
Found at i:87545218 original size:75 final size:74
Alignment explanation
Indices: 87545120--87545268 Score: 208
Period size: 75 Copynumber: 2.0 Consensus size: 74
87545110 GTATGGTATC
** * * * * *
87545120 ATCCATACTGAGTTGTGATATGTAGGTATGGTATCATCCATACTGAGTTGTGATATGTAGGTATG
1 ATCCATACTGAGTTAAGAAATGTAGGTATGGCATCATCCATACCGAGTTGTAAAATGTAGGTATG
87545185 GTATTATCAA
66 GTATT-TCAA
**
87545195 ATCCATACTGAGTTAAGAAATGTAGGTATGGCATTGTCCATACCGAGTTGTAAAATGTAGGTATG
1 ATCCATACTGAGTTAAGAAATGTAGGTATGGCATCATCCATACCGAGTTGTAAAATGTAGGTATG
87545260 GTATTTCAA
66 GTATTTCAA
87545269 TGAGGAAAAC
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
74 4 0.06
75 61 0.94
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.35
Consensus pattern (74 bp):
ATCCATACTGAGTTAAGAAATGTAGGTATGGCATCATCCATACCGAGTTGTAAAATGTAGGTATG
GTATTTCAA
Found at i:87545235 original size:35 final size:35
Alignment explanation
Indices: 87545101--87545263 Score: 175
Period size: 35 Copynumber: 4.5 Consensus size: 35
87545091 GGAAAAGTGT
* *
87545101 GAAATATAGGTATGGTATCATCCATACTGAGTTGT
1 GAAATGTAGGTATGGTATCATCCATACTGAGTTGA
* *
87545136 GATATGTAGGTATGGTATCATCCATACTGAGTTGT
1 GAAATGTAGGTATGGTATCATCCATACTGAGTTGA
* *
87545171 GATATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGA
* ** *
87545211 GAAATGTAGGTATGGCATTGTCCATACCGAGTTGTA
1 GAAATGTAGGTATGGTATCATCCATACTGAGTTG-A
87545247 -AAATGTAGGTATGGTAT
1 GAAATGTAGGTATGGTAT
87545264 TTCAATGAGG
Statistics
Matches: 111, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
35 76 0.68
36 1 0.01
37 2 0.02
38 4 0.04
40 28 0.25
ACGTcount: A:0.31, C:0.10, G:0.25, T:0.34
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATCATCCATACTGAGTTGA
Found at i:87552014 original size:27 final size:26
Alignment explanation
Indices: 87551984--87552160 Score: 167
Period size: 27 Copynumber: 6.5 Consensus size: 26
87551974 AAATTGTGCG
*
87551984 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTA
* *
87552011 GCACTAAGTGTGCGAAATGAATATG-A
1 GCACTAAGTGTGCG-ATTGACTATGTA
* **
87552037 TGCACTAAGTGTGCGAATTGACCATGCG
1 -GCACTAAGTGTGCG-ATTGACTATGTA
87552065 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTA
* * *
87552093 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTA
* *
87552120 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTA
*
87552147 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
87552161 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTA
Found at i:87552103 original size:82 final size:81
Alignment explanation
Indices: 87551980--87552139 Score: 232
Period size: 82 Copynumber: 2.0 Consensus size: 81
87551970 GATTAAATTG
* * *
87551980 TGCGGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTA
1 TGCGGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTA
87552044 AGTGTGCGAATTGACCA
65 AGTGTGCGAATTGACCA
** *
87552061 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTA
1 TGCGGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTA
*
87552126 AGTGTGCGAGTTGA
65 AGTGTGCGAATTGA
87552140 TTATATAGCA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
81 22 0.31
82 48 0.69
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
TGCGGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAA
GTGTGCGAATTGACCA
Found at i:87552151 original size:82 final size:81
Alignment explanation
Indices: 87551984--87552160 Score: 212
Period size: 82 Copynumber: 2.2 Consensus size: 81
87551974 AAATTGTGCG
* * *
87551984 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
* *
87552049 GCGAATTGACCATGCG
66 GCGAATTGACCATACA
** *
87552065 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAGT
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
* ** *
87552129 GTGCGAGTTGATTATATA
64 GTGCGAATTGACCATACA
*
87552147 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
87552161 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.22
82 63 0.78
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATACA
Found at i:87556141 original size:47 final size:47
Alignment explanation
Indices: 87556081--87556415 Score: 348
Period size: 47 Copynumber: 7.1 Consensus size: 47
87556071 TTAGGATTTT
* ** *
87556081 ATGTGATGGATGTGAATGTGTATATATGAGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGTATATATGTGCTAAGGCCGAATGGCAA
* * * *
87556128 ATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGAAA
1 ATGTGATGAATGTGAACATGTATATATGTGCTAAGGCCGAATGGCAA
* * * *
87556175 ATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGAAA
1 ATGTGATGAATGTGAACATGTATATATGTGCTAAGGCCGAATGGCAA
* * * * * *
87556222 ATGTGATGAATGTGAACATGCATTTGTGTGATAAGACCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGCTAAGGCCGAATGGCAA
* * * *
87556269 ATGTGATGAATGTAAACATGTATATATGTGATAAGGCCGAATAGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGCTAAGGCCGAATGGCAA
* * * * *
87556316 ATGTGATGAATGTGAACATGCATATGTATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGCTAAGGCCGAATGGCAA
* * ** * **
87556363 ATGTGATGAACGTGGAA-GTGTATATATGTGGGAAAGCCGAATGGTTA
1 ATGTGATGAATGT-GAACATGTATATATGTGCTAAGGCCGAATGGCAA
87556410 ATGTGA
1 ATGTGA
87556416 AATGTGTATG
Statistics
Matches: 254, Mismatches: 33, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
47 251 0.99
48 3 0.01
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGCTAAGGCCGAATGGCAA
Found at i:87556179 original size:94 final size:94
Alignment explanation
Indices: 87556081--87556415 Score: 429
Period size: 94 Copynumber: 3.6 Consensus size: 94
87556071 TTAGGATTTT
* ** *
87556081 ATGTGATGGATGTGAATGTGTATATATGAGCTAAGGCCGAATGGCAAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGCTAAGGCCGAATGGCAAATGTGATGAATGTGAACA
* **
87556146 TGCATTTGTGTGCTAAGGCCGAATGGAAA
66 TGCATTTGTGTGATAAGGCCGAATGGCCA
* * * *
87556175 ATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGAAAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGCTAAGGCCGAATGGCAAATGTGATGAATGTGAACA
*
87556240 TGCATTTGTGTGATAAGACCGAATGGCCA
66 TGCATTTGTGTGATAAGGCCGAATGGCCA
* * * *
87556269 ATGTGATGAATGTAAACATGTATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGCTAAGGCCGAATGGCAAATGTGATGAATGTGAACA
* *
87556334 TGCATATGTATGATAAGGCCGAATGGCCA
66 TGCATTTGTGTGATAAGGCCGAATGGCCA
* * ** * **
87556363 ATGTGATGAACGTGGAA-GTGTATATATGTGGGAAAGCCGAATGGTTAATGTGA
1 ATGTGATGAATGT-GAACATGTATATATGTGCTAAGGCCGAATGGCAAATGTGA
87556416 AATGTGTATG
Statistics
Matches: 208, Mismatches: 32, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
94 206 0.99
95 2 0.01
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.27
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGTATATATGTGCTAAGGCCGAATGGCAAATGTGATGAATGTGAACA
TGCATTTGTGTGATAAGGCCGAATGGCCA
Found at i:87556403 original size:141 final size:141
Alignment explanation
Indices: 87556081--87556415 Score: 388
Period size: 141 Copynumber: 2.4 Consensus size: 141
87556071 TTAGGATTTT
* * * * * *
87556081 ATGTGATGGATGTGAATGTGTATATATGAGCTAAGGCCGAATGGCAAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACGTGTATATATGTGCGAAAGCCGAATGGCAAATGTGATGAATGTAAACA
* * * * * * *
87556146 TGCATTTGTGTGCTAAGGCCGAATGGAAAATGTGATGAATGTGAACATGCATTTGTGTGCTAAGG
66 TGCATATATGTGATAAGGCCGAATAGAAAATGTGATGAATGTGAACATGCATATGTATGATAAGG
87556211 CCGAATGGAAA
131 CCGAATGGAAA
* * * *
87556222 ATGTGATGAATGTGAACATGCAT-T-TGTGTGATAAGACCGAATGGCCAATGTGATGAATGTAAA
1 ATGTGATGAATGTGAACGTGTATATATGTGCGA-AAG-CCGAATGGCAAATGTGATGAATGTAAA
* **
87556285 CATGTATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAACATGCATATGTATGATAA
64 CATGCATATATGTGATAAGGCCGAATAGAAAATGTGATGAATGTGAACATGCATATGTATGATAA
**
87556350 GGCCGAATGGCCA
129 GGCCGAATGGAAA
* * **
87556363 ATGTGATGAACGTGGAA-GTGTATATATGTGGGAAAGCCGAATGGTTAATGTGA
1 ATGTGATGAATGT-GAACGTGTATATATGTGCGAAAGCCGAATGGCAAATGTGA
87556416 AATGTGTATG
Statistics
Matches: 161, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
139 4 0.02
140 3 0.02
141 141 0.88
142 7 0.04
143 6 0.04
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.27
Consensus pattern (141 bp):
ATGTGATGAATGTGAACGTGTATATATGTGCGAAAGCCGAATGGCAAATGTGATGAATGTAAACA
TGCATATATGTGATAAGGCCGAATAGAAAATGTGATGAATGTGAACATGCATATGTATGATAAGG
CCGAATGGAAA
Found at i:87556452 original size:46 final size:46
Alignment explanation
Indices: 87556386--87556476 Score: 130
Period size: 46 Copynumber: 2.0 Consensus size: 46
87556376 GGAAGTGTAT
* * *
87556386 ATATGTGGGAAAGCCGAATGGTTAATGTGA-AATGTGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGTGAGAA-ATGTATGAGATGG
*
87556432 ATATGTGGTAAAGCCAAATGGCTAATGTGAGAAATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGTGAGAAATGTATGAGATG
87556477 TGTATATATA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
46 38 0.95
47 2 0.05
ACGTcount: A:0.35, C:0.05, G:0.32, T:0.27
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGTGAGAAATGTATGAGATGG
Found at i:87560268 original size:35 final size:35
Alignment explanation
Indices: 87560236--87560366 Score: 120
Period size: 35 Copynumber: 3.8 Consensus size: 35
87560226 TGTTCCATGG
87560236 CAAAG-TGTGAAATGTAGGTATGGTATCATCCATA
1 CAAAGTTGTGAAATGTAGGTATGGTATCATCCATA
** *
87560270 CTGAGTTGTGATATGTAGGTATGGTATCATCCATA
1 CAAAGTTGTGAAATGTAGGTATGGTATCATCCATA
** ** * * ***
87560305 CTGAGTTAAGAAATGTATGTATGGCATTGCCCATA
1 CAAAGTTGTGAAATGTAGGTATGGTATCATCCATA
** *
87560340 CCGAGTTGTAAAATGTAGGTATGGTAT
1 CAAAGTTGTGAAATGTAGGTATGGTAT
87560367 TTCAATGAGG
Statistics
Matches: 79, Mismatches: 17, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
34 3 0.04
35 76 0.96
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
CAAAGTTGTGAAATGTAGGTATGGTATCATCCATA
Found at i:87564212 original size:73 final size:73
Alignment explanation
Indices: 87564093--87564276 Score: 237
Period size: 73 Copynumber: 2.5 Consensus size: 73
87564083 TAACTTAGGT
* * * * *
87564093 CACACGGCC-AGCCACATGCTCGTGTGCTAGGCCGTGTGGAATATTTAATTTTCAAAAATTAGGT
1 CACACGGCCAAGTCACACGCCCATGTGCTAGGCTGTGTGGAATATTTAATTTTCAAAAATTAGGT
*
87564157 GCAGGGGC
66 GCAAGGGC
87564165 CACACGGCCAAGTCACACGCCCATGTGCTAGGCTGTGTGGACA-ATTTAATTTTCAAAAATTAGG
1 CACACGGCCAAGTCACACGCCCATGTGCTAGGCTGTGTGGA-ATATTTAATTTTCAAAAATTAGG
*
87564229 TGCAAGGGT
65 TGCAAGGGC
* * * * *
87564238 CACACAGCAAAGTCTCACGCCCATATGCTAGGGTGTGTG
1 CACACGGCCAAGTCACACGCCCATGTGCTAGGCTGTGTG
87564277 ACACATATGG
Statistics
Matches: 98, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
72 9 0.09
73 88 0.90
74 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (73 bp):
CACACGGCCAAGTCACACGCCCATGTGCTAGGCTGTGTGGAATATTTAATTTTCAAAAATTAGGT
GCAAGGGC
Found at i:87565463 original size:23 final size:25
Alignment explanation
Indices: 87565448--87565499 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
87565438 AAGTTCAAGC
87565448 GAGCC-ATATCAGGAAGCTCACAAA
1 GAGCCTATATCAGGAAGCTCACAAA
* *
87565472 GAGCCTATATCAGGACGCTCATAAA
1 GAGCCTATATCAGGAAGCTCACAAA
87565497 GAG
1 GAG
87565500 TTGCGATATG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (25 bp):
GAGCCTATATCAGGAAGCTCACAAA
Found at i:87568259 original size:34 final size:33
Alignment explanation
Indices: 87568220--87568337 Score: 103
Period size: 34 Copynumber: 3.5 Consensus size: 33
87568210 AAGCCTTAAA
87568220 CCTAAACTCCAAACTCATAACCCCAAACCCAAAC
1 CCTAAACTCCAAACTC-TAACCCCAAACCCAAAC
* * *
87568254 CCTAAACTCCAAACTCGTAACCCGTAATCTCAAAC
1 CCTAAACTCCAAACTC-TAACCC-CAAACCCAAAC
* ** * *
87568289 CCTTGAAC-CTTGAACTCGAACCCCAAACCCAAAA
1 CC-TAAACTC-CAAACTCTAACCCCAAACCCAAAC
*
87568323 CCTAAACTCGAAACT
1 CCTAAACTCCAAACT
87568338 TGAACTTTAA
Statistics
Matches: 65, Mismatches: 15, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
33 8 0.12
34 32 0.49
35 16 0.25
36 9 0.14
ACGTcount: A:0.40, C:0.39, G:0.05, T:0.16
Consensus pattern (33 bp):
CCTAAACTCCAAACTCTAACCCCAAACCCAAAC
Found at i:87570010 original size:24 final size:24
Alignment explanation
Indices: 87569978--87570034 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
87569968 ATGATTTTAG
* *
87569978 TATTCATTTAAAATTAA-TTATT-A
1 TATTTATTT-AAATAAAGTTATTAA
87570001 TATTTTATTTAAATAAAGTTATTAA
1 TA-TTTATTTAAATAAAGTTATTAA
87570026 TATTTATTT
1 TATTTATTT
87570035 GTAAAACTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
23 8 0.28
24 18 0.62
25 3 0.10
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (24 bp):
TATTTATTTAAATAAAGTTATTAA
Found at i:87572764 original size:3 final size:3
Alignment explanation
Indices: 87572758--87572787 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
87572748 ATTGCAGCAG
87572758 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
87572788 CATGATTCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:87576617 original size:16 final size:16
Alignment explanation
Indices: 87576596--87576632 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
87576586 AAAAATAAGT
87576596 AAAATAAAATGGATTA
1 AAAATAAAATGGATTA
*
87576612 AAAAT-AAGTGGATTA
1 AAAATAAAATGGATTA
87576627 AAAATA
1 AAAATA
87576633 TTATATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.62, C:0.00, G:0.14, T:0.24
Consensus pattern (16 bp):
AAAATAAAATGGATTA
Found at i:87594034 original size:45 final size:44
Alignment explanation
Indices: 87593984--87594068 Score: 143
Period size: 45 Copynumber: 1.9 Consensus size: 44
87593974 ACAAAACATG
87593984 TGTCATACATATCACGAACTCAGACCACAACTCAATGAGTTAGGA
1 TGTCATACATATCACGAACTCAGA-CACAACTCAATGAGTTAGGA
* *
87594029 TGTCATATATATCATGAACTCAGACACAACTCAATGAGTT
1 TGTCATACATATCACGAACTCAGACACAACTCAATGAGTT
87594069 CAGATTACAT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 16 0.42
45 22 0.58
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (44 bp):
TGTCATACATATCACGAACTCAGACACAACTCAATGAGTTAGGA
Found at i:87601012 original size:23 final size:23
Alignment explanation
Indices: 87600964--87601040 Score: 84
Period size: 23 Copynumber: 3.2 Consensus size: 23
87600954 CAGCTCGTAT
*
87600964 GAGCTTACCGATATATCATCTTGAAA
1 GAGCTTACCG-T-T-TCATCTCGAAA
87600990 GAGCTTACCGTTTCATCTCGAAA
1 GAGCTTACCGTTTCATCTCGAAA
*
87601013 GAGCTTACCG-ATCATGGCTCGAAA
1 GAGCTTACCGTTTCAT--CTCGAAA
87601037 GAGC
1 GAGC
87601041 ATAAATGATG
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
22 4 0.09
23 20 0.43
24 12 0.26
25 1 0.02
26 10 0.21
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (23 bp):
GAGCTTACCGTTTCATCTCGAAA
Found at i:87601038 original size:24 final size:23
Alignment explanation
Indices: 87600977--87601040 Score: 85
Period size: 23 Copynumber: 2.7 Consensus size: 23
87600967 CTTACCGATA
*
87600977 TATCATCTTGAAAGAGCTTACCG
1 TATCATCTCGAAAGAGCTTACCG
*
87601000 TTTCATCTCGAAAGAGCTTACCG
1 TATCATCTCGAAAGAGCTTACCG
87601023 -ATCATGGCTCGAAAGAGC
1 TATCAT--CTCGAAAGAGC
87601041 ATAAATGATG
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
22 4 0.11
23 21 0.58
24 11 0.31
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (23 bp):
TATCATCTCGAAAGAGCTTACCG
Found at i:87603871 original size:10 final size:10
Alignment explanation
Indices: 87603856--87603883 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
87603846 TTCACTATCT
87603856 TCTCCTCTAA
1 TCTCCTCTAA
87603866 TCTCCTCTAA
1 TCTCCTCTAA
87603876 TCTCCTCT
1 TCTCCTCT
87603884 CTTGTTGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.14, C:0.43, G:0.00, T:0.43
Consensus pattern (10 bp):
TCTCCTCTAA
Found at i:87612219 original size:18 final size:20
Alignment explanation
Indices: 87612184--87612223 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
87612174 TTAAAGGCTA
87612184 TTTTTATTATTAAGTTTAAT
1 TTTTTATTATTAAGTTTAAT
*
87612204 TTTTTTTTA-TAA-TTTAAT
1 TTTTTATTATTAAGTTTAAT
87612222 TT
1 TT
87612224 GAATTATCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 3 0.16
20 8 0.42
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (20 bp):
TTTTTATTATTAAGTTTAAT
Found at i:87612363 original size:42 final size:42
Alignment explanation
Indices: 87612316--87612402 Score: 165
Period size: 42 Copynumber: 2.1 Consensus size: 42
87612306 CTGTTTTATG
87612316 ATCTAAGTATAATCATATTTGAACGGGTGATATTTAGATAAA
1 ATCTAAGTATAATCATATTTGAACGGGTGATATTTAGATAAA
*
87612358 ATCTAAGTATAATCATATTTGAACGGGTGGTATTTAGATAAA
1 ATCTAAGTATAATCATATTTGAACGGGTGATATTTAGATAAA
87612400 ATC
1 ATC
87612403 CCCTCAATAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.39, C:0.08, G:0.17, T:0.36
Consensus pattern (42 bp):
ATCTAAGTATAATCATATTTGAACGGGTGATATTTAGATAAA
Found at i:87614606 original size:18 final size:18
Alignment explanation
Indices: 87614537--87614609 Score: 78
Period size: 18 Copynumber: 4.1 Consensus size: 18
87614527 GCGAGCTTTA
* *
87614537 TATAACATGTGAACCATG
1 TATATCATGTGAACCCTG
*
87614555 TATATCATGCGAACCCTAGG
1 TATATCATGTGAACCCT--G
*
87614575 TAT-T-ATGAGAACCCTG
1 TATATCATGTGAACCCTG
87614591 TATATCATGTGAACCCTG
1 TATATCATGTGAACCCTG
87614609 T
1 T
87614610 GTATATTGCG
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
16 4 0.09
17 1 0.02
18 36 0.78
19 1 0.02
20 4 0.09
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.30
Consensus pattern (18 bp):
TATATCATGTGAACCCTG
Found at i:87614932 original size:22 final size:22
Alignment explanation
Indices: 87614889--87614934 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
87614879 TTCGTGCAAC
* * *
87614889 CCCTACATGTTATTTATGCGAA
1 CCCTACATGTGATATATACGAA
*
87614911 CCCTACATGTGGTATATACGAA
1 CCCTACATGTGATATATACGAA
87614933 CC
1 CC
87614935 TTATTTGTTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (22 bp):
CCCTACATGTGATATATACGAA
Found at i:87616354 original size:11 final size:11
Alignment explanation
Indices: 87616322--87616356 Score: 52
Period size: 11 Copynumber: 3.0 Consensus size: 11
87616312 TTTTTTCAAA
87616322 AATATTATTTT
1 AATATTATTTT
87616333 AATATGATATTTT
1 AATAT--TATTTT
87616346 AATATTATTTT
1 AATATTATTTT
87616357 GGTCCTTGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 11 0.50
13 11 0.50
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (11 bp):
AATATTATTTT
Found at i:87618474 original size:10 final size:10
Alignment explanation
Indices: 87618459--87618484 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
87618449 TAATTTTTCC
87618459 CTTTCTTTTT
1 CTTTCTTTTT
87618469 CTTTCTTTTT
1 CTTTCTTTTT
87618479 CTTTCT
1 CTTTCT
87618485 CCCTATTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (10 bp):
CTTTCTTTTT
Done.