Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 274 of 333
Found at i:90679844 original size:55 final size:55
Alignment explanation
Indices: 90679778--90679890 Score: 199
Period size: 55 Copynumber: 2.1 Consensus size: 55
90679768 ATGTGTGCGA
90679778 TTAAGACCATGGCATCGATATGAGATTTCGATATATGTGTGCGAGTAAGACCCTG
1 TTAAGACCATGGCATCGATATGAGATTTCGATATATGTGTGCGAGTAAGACCCTG
* * *
90679833 TTAAGACCATGGCATCGATATGTGATTTCGATATATGTGTGTGAGTAAGCCCCTG
1 TTAAGACCATGGCATCGATATGAGATTTCGATATATGTGTGCGAGTAAGACCCTG
90679888 TTA
1 TTA
90679891 GGGATAGTGG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (55 bp):
TTAAGACCATGGCATCGATATGAGATTTCGATATATGTGTGCGAGTAAGACCCTG
Found at i:90700353 original size:16 final size:15
Alignment explanation
Indices: 90700319--90700360 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
90700309 GAGCATACTT
*
90700319 TTTATACAACTTTTC
1 TTTATATAACTTTTC
*
90700334 TTTATATAATCTTTTG
1 TTTATATAA-CTTTTC
90700350 TTTA-ATAACTT
1 TTTATATAACTT
90700361 AATTTACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 3 0.12
15 12 0.50
16 9 0.38
ACGTcount: A:0.29, C:0.12, G:0.02, T:0.57
Consensus pattern (15 bp):
TTTATATAACTTTTC
Found at i:90701461 original size:30 final size:30
Alignment explanation
Indices: 90701425--90701483 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
90701415 TGACATTGAG
90701425 GGTTAATTTTAAAAGAAGAAAAGATGAAAC
1 GGTTAATTTTAAAAGAAGAAAAGATGAAAC
*
90701455 GGTTAATTTTAAAAGGAGAAAAGATGAAA
1 GGTTAATTTTAAAAGAAGAAAAGATGAAA
90701484 TATATTGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.53, C:0.02, G:0.22, T:0.24
Consensus pattern (30 bp):
GGTTAATTTTAAAAGAAGAAAAGATGAAAC
Found at i:90702245 original size:37 final size:37
Alignment explanation
Indices: 90702195--90702268 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
90702185 CAGAATAAGG
90702195 TAAAACGAAGGGTGAGTTAACAAACATTGCGTAACCA
1 TAAAACGAAGGGTGAGTTAACAAACATTGCGTAACCA
90702232 TAAAACGAAGGGTGAGTTAACAAACATTGCGTAACCA
1 TAAAACGAAGGGTGAGTTAACAAACATTGCGTAACCA
90702269 AACTCAGATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.43, C:0.16, G:0.22, T:0.19
Consensus pattern (37 bp):
TAAAACGAAGGGTGAGTTAACAAACATTGCGTAACCA
Found at i:90702524 original size:40 final size:40
Alignment explanation
Indices: 90702477--90702553 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
90702467 TAGGTAGAAC
*
90702477 AAAGCAGAATAATACTGAATGGAACAGACCAGTACGGCGT
1 AAAGCAGAATAATACTGAATGGAACAGAACAGTACGGCGT
* *
90702517 AAAGCAGAATAATACTTAATGGAATAGAACAGTACGG
1 AAAGCAGAATAATACTGAATGGAACAGAACAGTACGG
90702554 AGCAAAGTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.45, C:0.14, G:0.23, T:0.17
Consensus pattern (40 bp):
AAAGCAGAATAATACTGAATGGAACAGAACAGTACGGCGT
Found at i:90708124 original size:19 final size:19
Alignment explanation
Indices: 90708100--90708173 Score: 71
Period size: 19 Copynumber: 3.8 Consensus size: 19
90708090 AATTCTAGAA
*
90708100 TTATAAAAAACATAAAATT
1 TTATAAAAATCATAAAATT
*
90708119 TTATAAAAATTATTAGAAATT
1 TTATAAAAATCA-TA-AAATT
*
90708140 AATTA-AAAAATCATAAAACT
1 --TTATAAAAATCATAAAATT
90708160 TTATAAAAAT-ATAA
1 TTATAAAAATCATAA
90708174 TTTTGTTATG
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
18 7 0.15
19 16 0.35
20 6 0.13
21 7 0.15
22 7 0.15
23 3 0.07
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.34
Consensus pattern (19 bp):
TTATAAAAATCATAAAATT
Found at i:90709824 original size:16 final size:17
Alignment explanation
Indices: 90709803--90709842 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
90709793 ATATATATTA
90709803 TATATTATTAATT-GAT
1 TATATTATTAATTAGAT
*
90709819 TATATTA-TAATTATAT
1 TATATTATTAATTAGAT
90709835 TATATTAT
1 TATATTAT
90709843 GAAACAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 5 0.24
16 16 0.76
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (17 bp):
TATATTATTAATTAGAT
Found at i:90709940 original size:11 final size:11
Alignment explanation
Indices: 90709909--90709952 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
90709899 TATATTTTTA
90709909 TAATTATAATT
1 TAATTATAATT
90709920 TAAATATATAATT
1 T-AAT-TATAATT
*
90709933 TACTTATAATT
1 TAATTATAATT
*
90709944 TAAGTATAA
1 TAATTATAA
90709953 AGATATTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
11 15 0.54
12 5 0.18
13 8 0.29
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (11 bp):
TAATTATAATT
Found at i:90710123 original size:33 final size:30
Alignment explanation
Indices: 90710073--90710133 Score: 77
Period size: 33 Copynumber: 1.9 Consensus size: 30
90710063 TATAATTGTA
*
90710073 ATATTTTTATTTAATTATTTAAGTAAATAG
1 ATATTTTTATTTAATTATTAAAGTAAATAG
*
90710103 ATATTTATTATTTATAATTATTAAATTAAAT
1 ATATTT-TTA-TT-TAATTATTAAAGTAAAT
90710134 TAAAGACAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 6 0.23
31 3 0.12
32 2 0.08
33 15 0.58
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (30 bp):
ATATTTTTATTTAATTATTAAAGTAAATAG
Found at i:90710488 original size:13 final size:14
Alignment explanation
Indices: 90710462--90710490 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
90710452 CGGAAGTGGG
90710462 AAAGAAAGAATAAA
1 AAAGAAAGAATAAA
90710476 AAAGAAA-AATAAA
1 AAAGAAAGAATAAA
90710489 AA
1 AA
90710491 TAAAAAGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.07
Consensus pattern (14 bp):
AAAGAAAGAATAAA
Found at i:90711749 original size:47 final size:47
Alignment explanation
Indices: 90711695--90711793 Score: 121
Period size: 47 Copynumber: 2.1 Consensus size: 47
90711685 TTGTGTGTCA
**
90711695 TACTGTTACTA-TTACTTCGG-ATTAATCTGATGAGGTACTGAGTACCG
1 TACTGTTACTATTTACTTCGGCA-TAATC-GATGAGACACTGAGTACCG
* * *
90711742 TACTGTTACTATTTATTTCGGCATAGTCGATGAGACACTGAGTGCCG
1 TACTGTTACTATTTACTTCGGCATAATCGATGAGACACTGAGTACCG
90711789 TACTG
1 TACTG
90711794 GTGTGTTGGT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
47 32 0.71
48 12 0.27
49 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (47 bp):
TACTGTTACTATTTACTTCGGCATAATCGATGAGACACTGAGTACCG
Found at i:90711940 original size:48 final size:48
Alignment explanation
Indices: 90711887--90711981 Score: 127
Period size: 48 Copynumber: 2.0 Consensus size: 48
90711877 TAATGGTTGA
* *
90711887 CTGTTACTGAATAATAAAGATCAATTGATTGCTACTGAAAAATATTGC
1 CTGTTACTGAATAATAAAGATAAATTGATTGATACTGAAAAATATTGC
* * ** *
90711935 CTGTTATTGAATGATATTGATAAATTGATTGATATTGAAAAATATTG
1 CTGTTACTGAATAATAAAGATAAATTGATTGATACTGAAAAATATTG
90711982 ATTGATAATG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.39, C:0.07, G:0.16, T:0.38
Consensus pattern (48 bp):
CTGTTACTGAATAATAAAGATAAATTGATTGATACTGAAAAATATTGC
Found at i:90711967 original size:18 final size:20
Alignment explanation
Indices: 90711939--90711988 Score: 68
Period size: 18 Copynumber: 2.6 Consensus size: 20
90711929 TATTGCCTGT
* *
90711939 TATTGAATGATATTG-ATAA
1 TATTGATTGATATTGAAAAA
90711958 -ATTGATTGATATTGAAAAA
1 TATTGATTGATATTGAAAAA
90711977 TATTGATTGATA
1 TATTGATTGATA
90711989 ATGAGCTTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 13 0.48
19 3 0.11
20 11 0.41
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (20 bp):
TATTGATTGATATTGAAAAA
Found at i:90715347 original size:10 final size:10
Alignment explanation
Indices: 90715296--90715369 Score: 53
Period size: 10 Copynumber: 7.3 Consensus size: 10
90715286 TTTTTAATGG
90715296 TTTTAATAAAT
1 TTTTAAT-AAT
* *
90715307 TTGTTTATAAA
1 TT-TTAATAAT
*
90715318 TTTT-ATGAT
1 TTTTAATAAT
90715327 TTTTAATTAAT
1 TTTTAA-TAAT
90715338 TTTTAATAAT
1 TTTTAATAAT
* *
90715348 TATT-ATAAA
1 TTTTAATAAT
*
90715357 TTTTAATTAT
1 TTTTAATAAT
90715367 TTT
1 TTT
90715370 AAACTTTTTT
Statistics
Matches: 49, Mismatches: 10, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
9 14 0.29
10 16 0.33
11 15 0.31
12 4 0.08
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (10 bp):
TTTTAATAAT
Found at i:90715362 original size:19 final size:19
Alignment explanation
Indices: 90715311--90715363 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
90715301 ATAAATTTGT
* *
90715311 TTATAAATTTT-ATGATTT
1 TTATAAATTTTAATAATTA
*
90715329 TTAATTAATTTTTAATAATTA
1 TT-A-TAAATTTTAATAATTA
90715350 TTATAAATTTTAAT
1 TTATAAATTTTAAT
90715364 TATTTTAAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
18 2 0.07
19 11 0.39
20 8 0.29
21 7 0.25
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (19 bp):
TTATAAATTTTAATAATTA
Found at i:90715365 original size:16 final size:17
Alignment explanation
Indices: 90715344--90715377 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
90715334 TAATTTTTAA
90715344 TAATTATTATAAA-TTT
1 TAATTATTATAAACTTT
*
90715360 TAATTATTTTAAACTTT
1 TAATTATTATAAACTTT
90715377 T
1 T
90715378 TTATACTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (17 bp):
TAATTATTATAAACTTT
Found at i:90717744 original size:37 final size:37
Alignment explanation
Indices: 90717676--90717748 Score: 87
Period size: 37 Copynumber: 2.0 Consensus size: 37
90717666 TCACTATGTA
90717676 TTTTTGAATTAAAAAATATATTAAATGTAAAAATATGG
1 TTTTTGAATTAAAAAATATATTAAATGT-AAAATATGG
* * *
90717714 TTTTTTAA-TAAAAATTATTTTAAA-GATAAAATATG
1 TTTTTGAATTAAAAAATATATTAAATG-TAAAATATG
90717749 AAATTGGTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
36 9 0.29
37 15 0.48
38 7 0.23
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.42
Consensus pattern (37 bp):
TTTTTGAATTAAAAAATATATTAAATGTAAAATATGG
Found at i:90718403 original size:9 final size:9
Alignment explanation
Indices: 90718389--90718425 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
90718379 TATAGTTTAA
90718389 TATTCGAAT
1 TATTCGAAT
90718398 TATTCGAAT
1 TATTCGAAT
*
90718407 TATTCGAGT
1 TATTCGAAT
90718416 TATTCGAAT
1 TATTCGAAT
90718425 T
1 T
90718426 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:90718502 original size:19 final size:19
Alignment explanation
Indices: 90718465--90718502 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
90718455 TTCGAAAAAA
*
90718465 AATTCGAGTTGACTCAAAT
1 AATTCGAGTTAACTCAAAT
90718484 AATTCGA-TTAACTCGAAAT
1 AATTCGAGTTAACTC-AAAT
90718503 TCGAATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (19 bp):
AATTCGAGTTAACTCAAAT
Found at i:90728630 original size:17 final size:17
Alignment explanation
Indices: 90728608--90728640 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
90728598 CACATTACAC
*
90728608 CATACGGCCATGTCTTG
1 CATACGACCATGTCTTG
90728625 CATACGACCATGTCTT
1 CATACGACCATGTCTT
90728641 CATCGAACAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.30, G:0.18, T:0.30
Consensus pattern (17 bp):
CATACGACCATGTCTTG
Found at i:90737922 original size:24 final size:24
Alignment explanation
Indices: 90737828--90737925 Score: 74
Period size: 24 Copynumber: 4.0 Consensus size: 24
90737818 AGTTACCCAT
*
90737828 TAAGCTCGCATGAGCTTTCTGATT-
1 TAAGCTCACATGAGCTTTCTG-TTA
** *
90737852 TAAGCTCTTATGAGCTTTTTGTTA
1 TAAGCTCACATGAGCTTTCTGTTA
* * * *
90737876 TTAAGCCCGA-ATAATCTTCCTGTTA
1 -TAAGCTC-ACATGAGCTTTCTGTTA
*
90737901 CAAGCTCACATGAGCTTTCTGTTA
1 TAAGCTCACATGAGCTTTCTGTTA
90737925 T
1 T
90737926 TTGGTTTGGA
Statistics
Matches: 55, Mismatches: 15, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
23 3 0.05
24 35 0.64
25 17 0.31
ACGTcount: A:0.23, C:0.20, G:0.16, T:0.40
Consensus pattern (24 bp):
TAAGCTCACATGAGCTTTCTGTTA
Found at i:90739953 original size:46 final size:44
Alignment explanation
Indices: 90739894--90740008 Score: 140
Period size: 44 Copynumber: 2.6 Consensus size: 44
90739884 ACAGGACAGA
* *
90739894 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* * *
90739940 ACAGGATTGAGCCATGTAATTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
90739984 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
90740009 GTCAAAGACA
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 34 0.58
46 25 0.42
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.29
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:90739989 original size:44 final size:45
Alignment explanation
Indices: 90739901--90740027 Score: 139
Period size: 44 Copynumber: 2.8 Consensus size: 45
90739891 AGAACAGAAA
*
90739901 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGAT
1 TGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAT
* * *
90739947 TGAGCCATGTAATTCCATATT-ATATATGGCATTGGAGACAGGAA
1 TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAT
* ** * * *
90739991 TAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 TGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
90740028 CAGGATATTG
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
44 35 0.52
45 1 0.01
46 31 0.46
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (45 bp):
TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAT
Found at i:90742281 original size:25 final size:25
Alignment explanation
Indices: 90742253--90742303 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
90742243 TTGAATATGG
90742253 ACACCCATTTGTCGAGATACATTCT
1 ACACCCATTTGTCGAGATACATTCT
* *
90742278 ACACCCGTTTGTCGATATACATTCT
1 ACACCCATTTGTCGAGATACATTCT
90742303 A
1 A
90742304 GAATTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.33
Consensus pattern (25 bp):
ACACCCATTTGTCGAGATACATTCT
Found at i:90742683 original size:29 final size:30
Alignment explanation
Indices: 90742645--90742714 Score: 78
Period size: 29 Copynumber: 2.4 Consensus size: 30
90742635 GGTTGTAATA
*
90742645 AATTATTTTTTATA-AATT-TTAT-GATTTTT
1 AATTAATTTTTATATAATTATTATAGA--TTT
90742674 AATTAATTTTTA-ATAATTATTATAGATTT
1 AATTAATTTTTATATAATTATTATAGATTT
90742703 AATT-ATTTTTAT
1 AATTAATTTTTAT
90742715 TTTTTTGAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
28 8 0.22
29 22 0.61
30 4 0.11
31 2 0.06
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (30 bp):
AATTAATTTTTATATAATTATTATAGATTT
Found at i:90743786 original size:30 final size:30
Alignment explanation
Indices: 90743752--90743839 Score: 133
Period size: 30 Copynumber: 2.9 Consensus size: 30
90743742 ATAAGATAAT
90743752 TTTCAAAATTTCAAAATATTTATAAAAAAA
1 TTTCAAAATTTCAAAATATTTATAAAAAAA
*
90743782 TTTCAAAATTTCAAAATATTTATAAAAAAT
1 TTTCAAAATTTCAAAATATTTATAAAAAAA
* *
90743812 TTTCAAAATTTTATAAA-AATTATAAAAA
1 TTTCAAAATTTCA-AAATATTTATAAAAA
90743840 TATCAAAAAC
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
30 51 0.94
31 3 0.06
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.39
Consensus pattern (30 bp):
TTTCAAAATTTCAAAATATTTATAAAAAAA
Found at i:90743812 original size:21 final size:21
Alignment explanation
Indices: 90743786--90743830 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 21
90743776 AAAAAATTTC
90743786 AAAA-TTTCAAAATATTTATAA
1 AAAATTTTCAAAAT-TTTATAA
90743807 AAAATTTTCAAAATTTTATAA
1 AAAATTTTCAAAATTTTATAA
90743828 AAA
1 AAA
90743831 TTATAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (21 bp):
AAAATTTTCAAAATTTTATAA
Found at i:90743834 original size:9 final size:9
Alignment explanation
Indices: 90743822--90743903 Score: 53
Period size: 9 Copynumber: 8.9 Consensus size: 9
90743812 TTTCAAAATT
90743822 TTATAAAAA
1 TTATAAAAA
90743831 TTATAAAAA
1 TTATAAAAA
90743840 -TATCAAAAA
1 TTAT-AAAAA
*
90743849 CTA-AAAAGCA
1 TTATAAAA--A
90743859 TTATACAAAA
1 TTATA-AAAA
* *
90743869 TTCTGAAAA
1 TTATAAAAA
90743878 TTATATAAAA
1 TTATA-AAAA
* *
90743888 ATGTAAAAA
1 TTATAAAAA
90743897 TTA-AAAA
1 TTATAAAA
90743904 TTAAAATATA
Statistics
Matches: 57, Mismatches: 9, Indels: 15
0.70 0.11 0.19
Matches are distributed among these distances:
8 11 0.19
9 26 0.46
10 16 0.28
11 1 0.02
12 3 0.05
ACGTcount: A:0.62, C:0.06, G:0.04, T:0.28
Consensus pattern (9 bp):
TTATAAAAA
Found at i:90743869 original size:58 final size:55
Alignment explanation
Indices: 90743801--90743909 Score: 137
Period size: 58 Copynumber: 1.9 Consensus size: 55
90743791 TTCAAAATAT
* *
90743801 TTATAAAAAATTTTCAAAATTTTATAAAAATTATAAAAATATCAAAAACTAAAAAGCA
1 TTATAAAAAATTCTCAAAATTATATAAAAA-TATAAAAAT-T-AAAAACTAAAAAGCA
* * * *
90743859 TTATACAAAATTCTGAAAATTATATAAAAATGTAAAAATTAAAAATTAAAA
1 TTATAAAAAATTCTCAAAATTATATAAAAATATAAAAATTAAAAACTAAAA
90743910 TATATTTTGA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
55 10 0.22
56 1 0.02
57 8 0.18
58 26 0.58
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.31
Consensus pattern (55 bp):
TTATAAAAAATTCTCAAAATTATATAAAAATATAAAAATTAAAAACTAAAAAGCA
Found at i:90751422 original size:28 final size:28
Alignment explanation
Indices: 90751391--90751455 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
90751381 TTAAATTAAA
*
90751391 AAATTTTAAAAATAATTTTATATATTTT
1 AAATTTTAAAAATAATTTTATAAATTTT
*** *
90751419 AAATTTTTTTAATAATTTTTTAAATTTT
1 AAATTTTAAAAATAATTTTATAAATTTT
*
90751447 AAAATTTAA
1 AAATTTTAA
90751456 TTAATTGTTG
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (28 bp):
AAATTTTAAAAATAATTTTATAAATTTT
Found at i:90756829 original size:26 final size:26
Alignment explanation
Indices: 90756800--90756861 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
90756790 AACTAATAAT
90756800 AAAAACTAATTTTAAATTAAGCTTTA
1 AAAAACTAATTTTAAATTAAGCTTTA
90756826 AAAAACTAATTTTAAATTAAGCTTTA
1 AAAAACTAATTTTAAATTAAGCTTTA
**
90756852 TTAAACTAAT
1 AAAAACTAAT
90756862 AATTTTTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.50, C:0.08, G:0.03, T:0.39
Consensus pattern (26 bp):
AAAAACTAATTTTAAATTAAGCTTTA
Found at i:90763386 original size:28 final size:28
Alignment explanation
Indices: 90763350--90763406 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
90763340 CATACATAAA
90763350 TCCACTGATATCTTGAAATATTTGAATC
1 TCCACTGATATCTTGAAATATTTGAATC
90763378 TCCACTGATATCTTGAAATATTTGAATC
1 TCCACTGATATCTTGAAATATTTGAATC
90763406 T
1 T
90763407 TGTGATTTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.40
Consensus pattern (28 bp):
TCCACTGATATCTTGAAATATTTGAATC
Found at i:90765119 original size:27 final size:29
Alignment explanation
Indices: 90765071--90765127 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 29
90765061 ACATCTATTA
* *
90765071 ACCAAAATTAATAATTACAATATT-TTTT
1 ACCAAAATTAAAAACTACAATATTATTTT
*
90765099 ACCAAATTTAAAAACTA-AATATTATTTT
1 ACCAAAATTAAAAACTACAATATTATTTT
90765127 A
1 A
90765128 TCCTAATATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 6 0.24
28 19 0.76
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.40
Consensus pattern (29 bp):
ACCAAAATTAAAAACTACAATATTATTTT
Found at i:90768051 original size:17 final size:19
Alignment explanation
Indices: 90768009--90768052 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
90767999 ACGAAATTTT
*
90768009 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
90768028 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
90768046 AA-TATTA
1 AATTATTA
90768053 CTGCATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:90772899 original size:35 final size:35
Alignment explanation
Indices: 90772838--90772995 Score: 201
Period size: 35 Copynumber: 4.5 Consensus size: 35
90772828 TCTGTTTTGT
90772838 TGTGTTTCGGATGGA-TAGCTCTTATGAGCATTGG
1 TGTGTTTCGGATGGATTAGCTCTTATGAGCATTGG
90772872 TGTGTTTCGGATGGATTAGCTCTTATGAGCATTGG
1 TGTGTTTCGGATGGATTAGCTCTTATGAGCATTGG
* ** *
90772907 TGTGTTCCAAATTGATTAGCTCTTATGAGCATTGG
1 TGTGTTTCGGATGGATTAGCTCTTATGAGCATTGG
* ** * **
90772942 TGTGTTCCAAATAGATTAGCTCTTATGAGCATCTAA
1 TGTGTTTCGGATGGATTAGCTCTTATGAGCAT-TGG
*
90772978 TGTGTTTCGGTTGGATTA
1 TGTGTTTCGGATGGATTA
90772996 TCGATGTACT
Statistics
Matches: 110, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
34 15 0.14
35 81 0.74
36 14 0.13
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.40
Consensus pattern (35 bp):
TGTGTTTCGGATGGATTAGCTCTTATGAGCATTGG
Found at i:90781136 original size:45 final size:45
Alignment explanation
Indices: 90781055--90781170 Score: 159
Period size: 45 Copynumber: 2.6 Consensus size: 45
90781045 TATCGTACGG
* * * *
90781055 TACTATTCAGGCCTTTGAG-CTAGCAGGCTATGATGCCGGTGAGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
90781099 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
90781144 TGA-TA-TCGGG-CTTCGAGCCTAGCAGGC
1 T-ACTATTCGGGCCTTCGAGCCTAGCAGGC
90781171 GAAATACCGG
Statistics
Matches: 66, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
43 17 0.26
44 22 0.33
45 26 0.39
46 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.25
Consensus pattern (45 bp):
TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:90786027 original size:15 final size:15
Alignment explanation
Indices: 90786007--90786043 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
90785997 AAAATTTTTA
90786007 ATTATTATGGAATTT
1 ATTATTATGGAATTT
*
90786022 ATTATTATGTAATTT
1 ATTATTATGGAATTT
90786037 ATT-TTAT
1 ATTATTAT
90786044 TTTTGTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 4 0.19
15 17 0.81
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.59
Consensus pattern (15 bp):
ATTATTATGGAATTT
Found at i:90789814 original size:43 final size:42
Alignment explanation
Indices: 90789754--90789862 Score: 132
Period size: 42 Copynumber: 2.6 Consensus size: 42
90789744 AATGCAAACG
* *
90789754 TCCCAGAC-GTGGTCTTACATGTAATCAAATATCGATGCC-ACTG
1 TCCCAGACAG-GGTCTTACACGTAATCAAATA-CGATGCCGA-TA
* *
90789797 TCCCAGATAGGGTCTTACACGAAATCAAATACGATGCCGATA
1 TCCCAGACAGGGTCTTACACGTAATCAAATACGATGCCGATA
*
90789839 TCCCAGACATGGTCTTACACGTAA
1 TCCCAGACAGGGTCTTACACGTAA
90789863 ATCTCAAATC
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
42 29 0.51
43 27 0.47
44 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (42 bp):
TCCCAGACAGGGTCTTACACGTAATCAAATACGATGCCGATA
Found at i:90789865 original size:43 final size:44
Alignment explanation
Indices: 90789754--90789865 Score: 142
Period size: 43 Copynumber: 2.6 Consensus size: 44
90789744 AATGCAAACG
* * *
90789754 TCCCAGACGTGGTCTTACATGT-AATCAAATATCGATGCCACTG
1 TCCCAGACATGGTCTTACACGTAAATCAAATATCGATGCCACTA
* *
90789797 TCCCAGATAGGGTCTTACACG-AAATCAAATA-CGATGCCGA-TA
1 TCCCAGACATGGTCTTACACGTAAATCAAATATCGATGCC-ACTA
90789839 TCCCAGACATGGTCTTACACGTAAATC
1 TCCCAGACATGGTCTTACACGTAAATC
90789866 TCAAATCGGT
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
42 27 0.46
43 32 0.54
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (44 bp):
TCCCAGACATGGTCTTACACGTAAATCAAATATCGATGCCACTA
Found at i:90797461 original size:42 final size:40
Alignment explanation
Indices: 90797370--90797525 Score: 159
Period size: 42 Copynumber: 3.7 Consensus size: 40
90797360 AATGCCAACA
* ** *
90797370 TCCCAGACGTGGTCTTACGTGTAATCAAATATCGATGCCACTG
1 TCCCAGACATGGTCTTACACGAAATC-AA-ATCGATGCCA-TG
* *
90797413 TCCCAGACAAGGTCTTATACGAAATCAAATGCGATGCCGATG
1 TCCCAGACATGGTCTTACACGAAATCAAAT-CGATGCC-ATG
*
90797455 TCCCAGACATGGTCTTACACTTAAATCTCAAATCGATGCCAATG
1 TCCCAGACATGGTCTTACAC-GAAA--TCAAATCGATGCC-ATG
*
90797499 TCCCAGACGTGGTCTTACACGAAATCA
1 TCCCAGACATGGTCTTACACGAAATCA
90797526 CATATCAGAA
Statistics
Matches: 96, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
41 5 0.05
42 29 0.30
43 27 0.28
44 29 0.30
45 6 0.06
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (40 bp):
TCCCAGACATGGTCTTACACGAAATCAAATCGATGCCATG
Found at i:90797505 original size:44 final size:41
Alignment explanation
Indices: 90797361--90797525 Score: 168
Period size: 43 Copynumber: 3.9 Consensus size: 41
90797351 AGCTCATACA
** * ** *
90797361 ATGCCAACATCCCAGACGTGGTCTTACGTGTAATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATC-AA-ATCG
* * *
90797404 ATGCCACTGTCCCAGACAAGGTCTTATACGAAATCAAATGCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAAT-CG
* *
90797446 ATGCCGATGTCCCAGACATGGTCTTACACTTAAATCTCAAATCG
1 ATGCCAATGTCCCAGACATGGTCTTACAC-GAAA--TCAAATCG
*
90797490 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCA
90797526 CATATCAGAA
Statistics
Matches: 101, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
41 5 0.05
42 29 0.29
43 32 0.32
44 29 0.29
45 6 0.06
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (41 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATCG
Found at i:90800000 original size:21 final size:20
Alignment explanation
Indices: 90799957--90800001 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
90799947 TCTTTTTCTA
*
90799957 ACATCAGAGGCATCGTTGCG
1 ACATCAGAGGCATCGTCGCG
90799977 ACATCAGATGGCCA-CGTCGCG
1 ACATCAGA-GG-CATCGTCGCG
90799998 ACAT
1 ACAT
90800002 GTAGTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 8 0.36
21 12 0.55
22 2 0.09
ACGTcount: A:0.27, C:0.29, G:0.27, T:0.18
Consensus pattern (20 bp):
ACATCAGAGGCATCGTCGCG
Found at i:90802435 original size:18 final size:17
Alignment explanation
Indices: 90802414--90802448 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
90802404 AACAAGCAAC
*
90802414 TAAATAACAATAAATAAA
1 TAAATAAAAAT-AATAAA
90802432 TAAATAAAAATAATAAA
1 TAAATAAAAATAATAAA
90802449 AGGAAGAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (17 bp):
TAAATAAAAATAATAAA
Found at i:90803563 original size:20 final size:21
Alignment explanation
Indices: 90803530--90803569 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
90803520 TGACCATTAA
**
90803530 ATAAATAATTTTAA-ATGGTT
1 ATAAATAAGGTTAATATGGTT
90803550 ATAAATAAGGTTAATATGGT
1 ATAAATAAGGTTAATATGGT
90803570 AAATAGATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.45, C:0.00, G:0.15, T:0.40
Consensus pattern (21 bp):
ATAAATAAGGTTAATATGGTT
Found at i:90804602 original size:43 final size:42
Alignment explanation
Indices: 90804467--90804605 Score: 131
Period size: 42 Copynumber: 3.2 Consensus size: 42
90804457 TGTGATTTCG
* *
90804467 TGTAAGACCACGTCT-GGA-ACGTTGACATCG-ATTTGATATTTACG
1 TGTAAGACCATGTCTAGGACA-G-TGACATCGTATTT-A-A-TTACA
* *
90804511 TGTAAGACCATGTCTAGGACATTGACATCGTATTTAATTTCA
1 TGTAAGACCATGTCTAGGACAGTGACATCGTATTTAATTACA
* * * *
90804553 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCATGTCTAGGACAGTGACATCG-TATTTAATTACA
90804596 TGTAAGACCA
1 TGTAAGACCA
90804606 CGTTTGGGAC
Statistics
Matches: 80, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
42 29 0.36
43 20 0.25
44 23 0.29
45 7 0.09
46 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATGTCTAGGACAGTGACATCGTATTTAATTACA
Found at i:90804614 original size:43 final size:42
Alignment explanation
Indices: 90804467--90804623 Score: 133
Period size: 43 Copynumber: 3.7 Consensus size: 42
90804457 TGTGATTTCG
* * *
90804467 TGTAAGACCACGTCTGGAAC-GTTGACATCG-ATTTGATATTTACG
1 TGTAAGACCACGTCTGGGACAG-TGGCATCGTATTT-A-A-TTACA
* * * * *
90804511 TGTAAGACCATGTCTAGGACATTGACATCGTATTTAATTTCA
1 TGTAAGACCACGTCTGGGACAGTGGCATCGTATTTAATTACA
*
90804553 TGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACAGTGGCATCG-TATTTAATTACA
*
90804596 TGTAAGACCACGTTTGGGAC-GTTGGCAT
1 TGTAAGACCACGTCTGGGACAG-TGGCAT
90804624 TGTACGAGCT
Statistics
Matches: 94, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
42 29 0.31
43 34 0.36
44 27 0.29
45 4 0.04
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCGTATTTAATTACA
Found at i:90816050 original size:26 final size:26
Alignment explanation
Indices: 90815976--90816054 Score: 68
Period size: 26 Copynumber: 2.9 Consensus size: 26
90815966 ACCCTAAAAT
*
90815976 AGATAAATTACTGAAATACCCTTAAAAG
1 AGATAAATTACTGAAATACCCCT--AAG
* * * ***
90816004 TGAAAAATTTACAGTTTTACCCCTAAG
1 AGATAAA-TTACTGAAATACCCCTAAG
90816031 AGATAAATTACTGAAATACCCCTA
1 AGATAAATTACTGAAATACCCCTA
90816055 GGGTTAAATT
Statistics
Matches: 37, Mismatches: 13, Indels: 4
0.69 0.24 0.07
Matches are distributed among these distances:
26 13 0.35
27 8 0.22
28 5 0.14
29 11 0.30
ACGTcount: A:0.44, C:0.18, G:0.10, T:0.28
Consensus pattern (26 bp):
AGATAAATTACTGAAATACCCCTAAG
Found at i:90822225 original size:20 final size:20
Alignment explanation
Indices: 90822173--90822226 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
90822163 CGGGTAAGGA
*
90822173 ACACGGGCGTGTCCCAATGC
1 ACACGGGCGTGTGCCAATGC
*
90822193 ACACGGACGTGTGCCAATGC
1 ACACGGGCGTGTGCCAATGC
90822213 ACACGGGCGTGTGC
1 ACACGGGCGTGTGC
90822227 ATCGCCTCCA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.20, C:0.31, G:0.33, T:0.15
Consensus pattern (20 bp):
ACACGGGCGTGTGCCAATGC
Found at i:90823470 original size:21 final size:22
Alignment explanation
Indices: 90823436--90823484 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
90823426 ATTGACCCCT
* *
90823436 GTTTAGTAGAAAAATTTTCAAA
1 GTTTTGTAGAAAAATTTTAAAA
90823458 GTTTTGTA-AAAAATTTTAAAA
1 GTTTTGTAGAAAAATTTTAAAA
*
90823479 TTTTTG
1 GTTTTG
90823485 ATTTAGTCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.41, C:0.02, G:0.12, T:0.45
Consensus pattern (22 bp):
GTTTTGTAGAAAAATTTTAAAA
Found at i:90824837 original size:90 final size:90
Alignment explanation
Indices: 90824617--90824838 Score: 241
Period size: 90 Copynumber: 2.5 Consensus size: 90
90824607 CATGTTCTAG
* * * *
90824617 TAATACA-AAGATTGATAGTTCAAGTATAACATTAAACATTTTTAAAGTATAAGTACTACATTGG
1 TAATACACAA-ATGGATAGTTCAAGTACAACATTAAATA-TTTCAAAGTATAAGTACTACATTGG
* *
90824681 ATATTTTATGAAAGTATAAGTACCAAA
64 ACATTTTATGAAAGTACAAGTACCAAA
** * ** * *
90824708 TAATACACAAATTAATAGTTCAAGTACTACATTGGATATTTCAAAGTATAGGT-GTCACATTGGA
1 TAATACACAAATGGATAGTTCAAGTACAACATTAAATATTTCAAAGTATAAGTACT-ACATTGGA
* *
90824772 CATTTTATGAAAGTACAATTATCAAA
65 CATTTTATGAAAGTACAAGTACCAAA
* * *
90824798 TAATATACAAATGGATAGTTCAAATACAATATTAAATATTT
1 TAATACACAAATGGATAGTTCAAGTACAACATTAAATATTT
90824839 TATGAAAGTA
Statistics
Matches: 108, Mismatches: 21, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
89 1 0.01
90 76 0.70
91 29 0.27
92 2 0.02
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (90 bp):
TAATACACAAATGGATAGTTCAAGTACAACATTAAATATTTCAAAGTATAAGTACTACATTGGAC
ATTTTATGAAAGTACAAGTACCAAA
Found at i:90834534 original size:17 final size:18
Alignment explanation
Indices: 90834500--90834545 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
90834490 CCGTTATGTC
90834500 CGCGACCGCGA-C--AAA
1 CGCGACCGCGACCGAAAA
90834515 CGCGA-CGCGACCGAAAA
1 CGCGACCGCGACCGAAAA
90834532 CGCGACCGCGACCG
1 CGCGACCGCGACCG
90834546 CAATTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
17 8 0.30
18 8 0.30
ACGTcount: A:0.28, C:0.41, G:0.30, T:0.00
Consensus pattern (18 bp):
CGCGACCGCGACCGAAAA
Found at i:90853919 original size:17 final size:17
Alignment explanation
Indices: 90853873--90853919 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
90853863 TTTGAGTCAA
*
90853873 TTTA-TTTTACTTTGTT
1 TTTATTTTTATTTTGTT
* **
90853889 TTTCTTTTCCTTTTGTT
1 TTTATTTTTATTTTGTT
90853906 TTTATTTTTATTTT
1 TTTATTTTTATTTT
90853920 AATTTCATGT
Statistics
Matches: 23, Mismatches: 7, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
16 3 0.13
17 20 0.87
ACGTcount: A:0.09, C:0.09, G:0.04, T:0.79
Consensus pattern (17 bp):
TTTATTTTTATTTTGTT
Found at i:90858633 original size:75 final size:75
Alignment explanation
Indices: 90858510--90858661 Score: 304
Period size: 75 Copynumber: 2.0 Consensus size: 75
90858500 CATTGATTAC
90858510 TATAAGCTATTACTAAGTACATGCATACAAACATACATATATGTATATGTATCACTCTCAACCAT
1 TATAAGCTATTACTAAGTACATGCATACAAACATACATATATGTATATGTATCACTCTCAACCAT
90858575 ATTAAAAGTT
66 ATTAAAAGTT
90858585 TATAAGCTATTACTAAGTACATGCATACAAACATACATATATGTATATGTATCACTCTCAACCAT
1 TATAAGCTATTACTAAGTACATGCATACAAACATACATATATGTATATGTATCACTCTCAACCAT
90858650 ATTAAAAGTT
66 ATTAAAAGTT
90858660 TA
1 TA
90858662 CTTCTTTTCA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 77 1.00
ACGTcount: A:0.41, C:0.17, G:0.08, T:0.34
Consensus pattern (75 bp):
TATAAGCTATTACTAAGTACATGCATACAAACATACATATATGTATATGTATCACTCTCAACCAT
ATTAAAAGTT
Found at i:90860947 original size:34 final size:34
Alignment explanation
Indices: 90860898--90860971 Score: 94
Period size: 34 Copynumber: 2.2 Consensus size: 34
90860888 TAACAAACTT
* * *
90860898 TAACAAACTCGGCTTCCTACTCCTACTAATAAGC
1 TAACAAACTCAGCTTCCTACTACTACTAACAAGC
* * *
90860932 TAACAAACTTAGCTTCTTTCTACTACTAACAAGC
1 TAACAAACTCAGCTTCCTACTACTACTAACAAGC
90860966 TAACAA
1 TAACAA
90860972 TCTCCCTAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.36, C:0.28, G:0.07, T:0.28
Consensus pattern (34 bp):
TAACAAACTCAGCTTCCTACTACTACTAACAAGC
Found at i:90863198 original size:76 final size:76
Alignment explanation
Indices: 90863104--90863251 Score: 215
Period size: 76 Copynumber: 1.9 Consensus size: 76
90863094 TCTATTCCTA
* *
90863104 AGTGTGCCCTCTAGATATAATTCATTTTGGACTGTATAATAAACTCCTCAATTTCATTATGACCA
1 AGTGTGCCCTCAAAATATAATTCATTTTGGACTGTATAATAAACTCCTCAATTTCATTATGACCA
90863169 ATCACTTCTTG
66 ATCACTTCTTG
* * * * ** *
90863180 AGTGTGTCCTCAAAATATAATTCTTTTTGGAGTGTGTAATAAACTTTTCAATTTCATTATGGCCA
1 AGTGTGCCCTCAAAATATAATTCATTTTGGACTGTATAATAAACTCCTCAATTTCATTATGACCA
90863245 ATCACTT
66 ATCACTT
90863252 AACTAAAAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
76 63 1.00
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (76 bp):
AGTGTGCCCTCAAAATATAATTCATTTTGGACTGTATAATAAACTCCTCAATTTCATTATGACCA
ATCACTTCTTG
Found at i:90868268 original size:54 final size:54
Alignment explanation
Indices: 90868190--90868294 Score: 140
Period size: 54 Copynumber: 1.9 Consensus size: 54
90868180 GACTCCCAAC
* * *
90868190 TTGTAGCTTCAATTTACTCCACTGCAACTTTA-GGAAGATAAGATTCACTATAAT
1 TTGTAGCTTCAATATACTCCACTGCAACGTCAGGGAA-ATAAGATTCACTATAAT
* * *
90868244 TTGTAGCTTTAATATATTCCACTGCAACGTCAGGGAAATAAGATTCGCTAT
1 TTGTAGCTTCAATATACTCCACTGCAACGTCAGGGAAATAAGATTCACTAT
90868295 CTTCGATCTG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
54 40 0.91
55 4 0.09
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.34
Consensus pattern (54 bp):
TTGTAGCTTCAATATACTCCACTGCAACGTCAGGGAAATAAGATTCACTATAAT
Found at i:90868528 original size:44 final size:44
Alignment explanation
Indices: 90868413--90868507 Score: 145
Period size: 44 Copynumber: 2.2 Consensus size: 44
90868403 GACTTTAGGA
* * *
90868413 AGATAAGGCTTATAACTTCAACCTGCTCTACTACAACTTCAGAG
1 AGATAAGGCTTATAGCTTTAATCTGCTCTACTACAACTTCAGAG
* *
90868457 AGATAAGGCTTATAGTTTTAATCTGCTCTATTACAACTTCAGAG
1 AGATAAGGCTTATAGCTTTAATCTGCTCTACTACAACTTCAGAG
90868501 AGATAAG
1 AGATAAG
90868508 ATCTGTGGCT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.31
Consensus pattern (44 bp):
AGATAAGGCTTATAGCTTTAATCTGCTCTACTACAACTTCAGAG
Found at i:90874944 original size:6 final size:6
Alignment explanation
Indices: 90874933--90874962 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
90874923 TCTAACCATC
*
90874933 TTTTCT TTTTCT TTTTCT TTTTCT TGTTCT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT
90874963 ACCGCCAGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.17, G:0.03, T:0.80
Consensus pattern (6 bp):
TTTTCT
Found at i:90882464 original size:52 final size:53
Alignment explanation
Indices: 90882386--90882540 Score: 181
Period size: 52 Copynumber: 3.0 Consensus size: 53
90882376 GACGGAAAAG
* *
90882386 ATGTGA-TACATGATTCCGTATAAGACCATAGCCGGGCTATGGCATCGGTACC
1 ATGTGATTACGTGATCCCGTATAAGACCATAGCCGGGCTATGGCATCGGTACC
* * ***
90882438 ATGTGATT-CGT-ATCCTCGTATAAGACCATAGCTGGGCTATGGCATCAGTGTG
1 ATGTGATTACGTGATCC-CGTATAAGACCATAGCCGGGCTATGGCATCGGTACC
* * * *
90882490 ATGTGATTATGTGATTCCGTATAAGACCATATCCGGGATATGGCATCGGTA
1 ATGTGATTACGTGATCCCGTATAAGACCATAGCCGGGCTATGGCATCGGTA
90882541 TGACATGTGG
Statistics
Matches: 85, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
51 3 0.04
52 47 0.55
53 32 0.38
54 3 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (53 bp):
ATGTGATTACGTGATCCCGTATAAGACCATAGCCGGGCTATGGCATCGGTACC
Found at i:90885630 original size:13 final size:13
Alignment explanation
Indices: 90885612--90885636 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
90885602 TATACTATTA
90885612 TTACTTACATCTC
1 TTACTTACATCTC
90885625 TTACTTACATCT
1 TTACTTACATCT
90885637 ATCATCTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.00, T:0.48
Consensus pattern (13 bp):
TTACTTACATCTC
Found at i:90889095 original size:17 final size:17
Alignment explanation
Indices: 90889073--90889106 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
90889063 ATCCACTAAT
*
90889073 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
90889090 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
90889107 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:90893734 original size:17 final size:17
Alignment explanation
Indices: 90893712--90893745 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
90893702 ATCCACTAAT
*
90893712 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
90893729 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
90893746 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:90898376 original size:128 final size:125
Alignment explanation
Indices: 90898077--90898386 Score: 388
Period size: 125 Copynumber: 2.5 Consensus size: 125
90898067 GCCAAACGAT
* * * * ** * *
90898077 AAATCGAAACCTAGCACGATTGGGCACGATTTATCGATTTTCCAAATACAGAATATTGCCTCATT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACAAAATATTGCCTCATT
* **
90898142 TTAATTTAAGAAAACATAGATGAAATTTCAAAAGGATATTATGTACTTTTGTCGAATGAA
66 TTAATTTAAGAAAACATAGACGAAATTTCAAAAGGATATTACATACTTTTGTCGAATGAA
* *
90898202 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCAAACACAAAATATTGCCTCGTT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACAAAATATTGCCTCATT
* * * * * *
90898267 TTAATTTAAGAAAACGTGGACGAAATTTCACAAGGGTATTCCATA-TTTTAGTTGAATGAAAAA
66 TTAATTTAAGAAAACATAGACGAAATTTCAAAAGGATATTACATACTTTT-GTCGAATG---AA
* *
90898330 AAATCGAAACCCAGCACGATTGGGTACGATCTCTCAAACTTCCAAACACGAAATATT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACAAAATATT
90898387 TCCTTATGTT
Statistics
Matches: 159, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
124 4 0.03
125 99 0.62
128 56 0.35
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.27
Consensus pattern (125 bp):
AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACAAAATATTGCCTCATT
TTAATTTAAGAAAACATAGACGAAATTTCAAAAGGATATTACATACTTTTGTCGAATGAA
Found at i:90898766 original size:11 final size:11
Alignment explanation
Indices: 90898746--90898781 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
90898736 AGCATATAAA
*
90898746 AAAATGATAGT
1 AAAATAATAGT
90898757 AAAATAATAGT
1 AAAATAATAGT
90898768 AAAAATAATAGT
1 -AAAATAATAGT
90898780 AA
1 AA
90898782 CAGAAATAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 12 0.52
12 11 0.48
ACGTcount: A:0.64, C:0.00, G:0.11, T:0.25
Consensus pattern (11 bp):
AAAATAATAGT
Found at i:90898788 original size:15 final size:12
Alignment explanation
Indices: 90898745--90898804 Score: 59
Period size: 12 Copynumber: 4.8 Consensus size: 12
90898735 TAGCATATAA
*
90898745 AAAAATGATAGT
1 AAAAATAATAGT
90898757 -AAAATAATAGT
1 AAAAATAATAGT
90898768 AAAAATAATAGT
1 AAAAATAATAGT
* *
90898780 AACAGAAATAGTAAT
1 -A-A-AAATAATAGT
90898795 AAAAATAATA
1 AAAAATAATA
90898805 ACGAAAATAG
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
11 10 0.25
12 18 0.45
13 2 0.05
14 2 0.05
15 8 0.20
ACGTcount: A:0.65, C:0.02, G:0.10, T:0.23
Consensus pattern (12 bp):
AAAAATAATAGT
Found at i:90898789 original size:24 final size:24
Alignment explanation
Indices: 90898745--90898817 Score: 73
Period size: 24 Copynumber: 3.1 Consensus size: 24
90898735 TAGCATATAA
*
90898745 AAAAATGATAGTAA-A-ATAATAGT
1 AAAAATAATAGTAACAGA-AATAGT
90898768 AAAAATAATAGTAACAGAAATAGT
1 AAAAATAATAGTAACAGAAATAGT
*
90898792 AATAAA-AATAATAAC-GAAAATAGT
1 AA-AAATAATAGTAACAG-AAATAGT
90898816 AA
1 AA
90898818 TGATAATAAC
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
23 14 0.32
24 26 0.59
25 4 0.09
ACGTcount: A:0.64, C:0.03, G:0.11, T:0.22
Consensus pattern (24 bp):
AAAAATAATAGTAACAGAAATAGT
Found at i:90898818 original size:24 final size:25
Alignment explanation
Indices: 90898762--90898826 Score: 75
Period size: 24 Copynumber: 2.7 Consensus size: 25
90898752 ATAGTAAAAT
*
90898762 AATAGTAA-AAATAATAGTAACAGA
1 AATAGTAATAAATAATAATAACAGA
90898786 AATAGTAATAAA-AATAATAAC-GAA
1 AATAGTAATAAATAATAATAACAG-A
*
90898810 AATAGTAAT-GATAATAA
1 AATAGTAATAAATAATAA
90898827 CAATATCTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
23 2 0.06
24 31 0.86
25 3 0.08
ACGTcount: A:0.63, C:0.03, G:0.11, T:0.23
Consensus pattern (25 bp):
AATAGTAATAAATAATAATAACAGA
Found at i:90898825 original size:12 final size:12
Alignment explanation
Indices: 90898752--90898825 Score: 55
Period size: 12 Copynumber: 6.2 Consensus size: 12
90898742 TAAAAAAATG
90898752 ATAGTAAA-ATA
1 ATAGTAAAGATA
*
90898763 ATAGTAAAAATA
1 ATAGTAAAGATA
90898775 ATAGTAACAGA-A
1 ATAGTAA-AGATA
*
90898787 ATAGTAATA-AAA
1 ATAGTAA-AGATA
* * *
90898799 ATAATAACGAAA
1 ATAGTAAAGATA
*
90898811 ATAGTAATGATA
1 ATAGTAAAGATA
90898823 ATA
1 ATA
90898826 ACAATATCTA
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
11 9 0.17
12 41 0.79
13 2 0.04
ACGTcount: A:0.62, C:0.03, G:0.11, T:0.24
Consensus pattern (12 bp):
ATAGTAAAGATA
Found at i:90900551 original size:18 final size:18
Alignment explanation
Indices: 90900447--90900549 Score: 73
Period size: 18 Copynumber: 5.4 Consensus size: 18
90900437 ACATTGTGAT
* *
90900447 CTGAAGCCCGAAGTCTAA
1 CTGAAGCACGAAGGCTAA
*
90900465 CTGAAGCACATAAGTGCTAAA
1 CTGAAGCAC-GAAG-GCT-AA
*
90900486 C-GAAAGCCCGAAGGCTAA
1 CTG-AAGCACGAAGGCTAA
*
90900504 CTGAAGCACATAAGTGCTAA
1 CTGAAGCAC-GAAG-GCTAA
* *
90900524 ATGGAAGCTCGAAGGCTAA
1 CT-GAAGCACGAAGGCTAA
90900543 CTGAAGC
1 CTGAAGC
90900550 TCACCAGAGC
Statistics
Matches: 66, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
18 21 0.32
19 16 0.24
20 15 0.23
21 14 0.21
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (18 bp):
CTGAAGCACGAAGGCTAA
Found at i:90900562 original size:39 final size:39
Alignment explanation
Indices: 90900449--90900549 Score: 166
Period size: 39 Copynumber: 2.6 Consensus size: 39
90900439 ATTGTGATCT
*
90900449 GAAGCCCGAAGTCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
* *
90900488 AAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAATG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
90900527 GAAGCTCGAAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
90900550 TCACCAGAGC
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 57 1.00
ACGTcount: A:0.39, C:0.22, G:0.25, T:0.15
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
Found at i:90902760 original size:16 final size:17
Alignment explanation
Indices: 90902739--90902771 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
90902729 GGATCTAAAT
90902739 GGAAAAAGAGAA-AAAA
1 GGAAAAAGAGAACAAAA
*
90902755 GGAAAAATAGAACAAAA
1 GGAAAAAGAGAACAAAA
90902772 TTGCAGTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.73, C:0.03, G:0.21, T:0.03
Consensus pattern (17 bp):
GGAAAAAGAGAACAAAA
Found at i:90912073 original size:18 final size:18
Alignment explanation
Indices: 90912030--90912073 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
90912020 TAAAATATAA
*
90912030 ATTAAAAAATTAAAAAAT
1 ATTATAAAATTAAAAAAT
*
90912048 ATTTTAAAATTATAAAAAT
1 ATTATAAAATTA-AAAAAT
90912067 A-TATAAA
1 ATTATAAA
90912074 TTCTAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
ATTATAAAATTAAAAAAT
Found at i:90915050 original size:30 final size:30
Alignment explanation
Indices: 90915014--90915070 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
90915004 ATAATGTCTG
*
90915014 TTTTCTAAATGAACTGGGCCTCGAGTACTA
1 TTTTCTAAATGAACTGAGCCTCGAGTACTA
90915044 TTTTCTAAATGAACTGAGCCTCGAGTA
1 TTTTCTAAATGAACTGAGCCTCGAGTA
90915071 ATAATTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33
Consensus pattern (30 bp):
TTTTCTAAATGAACTGAGCCTCGAGTACTA
Found at i:90915183 original size:11 final size:11
Alignment explanation
Indices: 90915148--90915183 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
90915138 TTTTGCTACC
90915148 ATTTTGTTATT
1 ATTTTGTTATT
*
90915159 ATATTGTTATT
1 ATTTTGTTATT
*
90915170 ATTTTGTTGTT
1 ATTTTGTTATT
90915181 ATT
1 ATT
90915184 ATTTGGATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.11, T:0.69
Consensus pattern (11 bp):
ATTTTGTTATT
Found at i:90927999 original size:51 final size:51
Alignment explanation
Indices: 90927944--90928079 Score: 155
Period size: 51 Copynumber: 2.7 Consensus size: 51
90927934 TGGAAACATG
*
90927944 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * * ** * * ** *
90927995 ATCTTATAAGATATTATTTTATAAGATTACATATCTTATCTAAGATATGTA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* *
90928046 ATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATATTATAATCTTAGAGAT
90928080 TTGATGGTAG
Statistics
Matches: 66, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
51 66 1.00
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.41
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
Found at i:90930853 original size:51 final size:51
Alignment explanation
Indices: 90930798--90930933 Score: 155
Period size: 51 Copynumber: 2.7 Consensus size: 51
90930788 TGGAAACATG
*
90930798 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * * ** * * ** *
90930849 ATCTTATAAGATATTATTTTATAAGATTACATATCTTATCTAAGATATGTA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* *
90930900 ATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATATTATAATCTTAGAGAT
90930934 TTGATGGTAG
Statistics
Matches: 66, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
51 66 1.00
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.41
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
Found at i:90937337 original size:21 final size:21
Alignment explanation
Indices: 90937313--90937352 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
90937303 TAAAACAATG
*
90937313 TAATTTTGCCTTTTAACTTGA
1 TAATTTTGACTTTTAACTTGA
*
90937334 TAATTTTGATTTTTAACTT
1 TAATTTTGACTTTTAACTT
90937353 TAGAAAAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.10, G:0.07, T:0.57
Consensus pattern (21 bp):
TAATTTTGACTTTTAACTTGA
Found at i:90937411 original size:70 final size:70
Alignment explanation
Indices: 90937316--90937466 Score: 223
Period size: 70 Copynumber: 2.2 Consensus size: 70
90937306 AACAATGTAA
*
90937316 TTTTGCCTTTTAACTTGATAATTTTGATTTTTAACTTTAGAAAAAGTAAACATTTATCTAA-ACG
1 TTTTGCCTTTTAACTTGATAATTTTGACTTTTAACTTTAGAAAAAGTAAACATTTATC-AAGACG
*
90937380 ACGTAG
65 ACATAG
* * * *
90937386 TTTTGCCTTTTAACTTGATAGTTTTGACTTTTAATTTTAGAAAATGTAAACATTTATCAAGATGA
1 TTTTGCCTTTTAACTTGATAATTTTGACTTTTAACTTTAGAAAAAGTAAACATTTATCAAGACGA
90937451 CATAG
66 CATAG
*
90937456 TTTTGTCTTTT
1 TTTTGCCTTTT
90937467 TTTATTTGGA
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
69 2 0.03
70 71 0.97
ACGTcount: A:0.31, C:0.11, G:0.12, T:0.46
Consensus pattern (70 bp):
TTTTGCCTTTTAACTTGATAATTTTGACTTTTAACTTTAGAAAAAGTAAACATTTATCAAGACGA
CATAG
Found at i:90937810 original size:18 final size:19
Alignment explanation
Indices: 90937787--90937822 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
90937777 TTTTTAAAAA
90937787 TATAAAT-TTTAGAATTTC
1 TATAAATATTTAGAATTTC
*
90937805 TATAAATATTTTGAATTT
1 TATAAATATTTAGAATTT
90937823 TAAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.53
Consensus pattern (19 bp):
TATAAATATTTAGAATTTC
Found at i:90937822 original size:19 final size:18
Alignment explanation
Indices: 90937787--90937835 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
90937777 TTTTTAAAAA
*
90937787 TATAAAT-TTTAGAATTT
1 TATAAATATTTTGAATTT
90937804 CTATAAATATTTTGAATTT
1 -TATAAATATTTTGAATTT
*
90937823 TAAAAATTATTTT
1 TATAAA-TATTTT
90937836 CAAATTTTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 12 0.44
19 15 0.56
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (18 bp):
TATAAATATTTTGAATTT
Found at i:90939241 original size:18 final size:19
Alignment explanation
Indices: 90939219--90939288 Score: 51
Period size: 18 Copynumber: 3.8 Consensus size: 19
90939209 AAACATAGTG
90939219 GATATTTGAAATATTATAT
1 GATATTTGAAATATTATAT
* * *
90939238 -ATATAT-AAACAATA-AT
1 GATATTTGAAATATTATAT
*
90939254 GATATTTGAAATAATTATTT
1 GATATTTGAAAT-ATTATAT
90939274 GAT-TTT-ATAATATTA
1 GATATTTGA-AATATTA
90939289 AAAATTACCA
Statistics
Matches: 39, Mismatches: 7, Indels: 11
0.68 0.12 0.19
Matches are distributed among these distances:
16 2 0.05
17 11 0.28
18 13 0.33
19 9 0.23
20 4 0.10
ACGTcount: A:0.46, C:0.01, G:0.07, T:0.46
Consensus pattern (19 bp):
GATATTTGAAATATTATAT
Found at i:90939921 original size:47 final size:46
Alignment explanation
Indices: 90939838--90939933 Score: 115
Period size: 47 Copynumber: 2.1 Consensus size: 46
90939828 TCCTTTTCTA
90939838 AAAAAAAGAGTTATTAATTAAAAACTAAATTAAAAATAAGAAAACTTG
1 AAAAAAAGAGTTATTAATTAAAAACTAAATTAAAAATAA-AAAA-TTG
* ** *
90939886 AAAAAAA-ATTTATTAATTAAAAA-TGTTATTTAAAATAAAAAATTG
1 AAAAAAAGAGTTATTAATTAAAAACT-AAATTAAAAATAAAAAATTG
90939931 AAA
1 AAA
90939934 CAATATGAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
45 6 0.14
46 5 0.12
47 25 0.58
48 7 0.16
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.29
Consensus pattern (46 bp):
AAAAAAAGAGTTATTAATTAAAAACTAAATTAAAAATAAAAAATTG
Found at i:90944767 original size:50 final size:49
Alignment explanation
Indices: 90944706--90944888 Score: 253
Period size: 50 Copynumber: 3.7 Consensus size: 49
90944696 TTATTTTCAA
90944706 ATATAATGTTTTAAATAAATATAAATATTTATTTAATTTGTTTTGTTTAG
1 ATATAATGTTTTAAATAAATATAAATATTT-TTTAATTTGTTTTGTTTAG
* * * * *
90944756 ATATATTGTTTTACATAAATATAAATATTTTTT-ATTTAATTATT-TTCAA
1 ATATAATGTTTTAAATAAATATAAATATTTTTTAATTT-GTT-TTGTTTAG
90944805 ATATAATGTTTTAAATAAATATAAATATTTATTTAATTTGTTTTGTTTAG
1 ATATAATGTTTTAAATAAATATAAATATTT-TTTAATTTGTTTTGTTTAG
* *
90944855 ATATATTGTTTTACATAAATATAAATATTTTTTA
1 ATATAATGTTTTAAATAAATATAAATATTTTTTA
90944889 TATTATTTGT
Statistics
Matches: 116, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
48 4 0.03
49 42 0.36
50 66 0.57
51 4 0.03
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (49 bp):
ATATAATGTTTTAAATAAATATAAATATTTTTTAATTTGTTTTGTTTAG
Found at i:90944783 original size:24 final size:23
Alignment explanation
Indices: 90944756--90944832 Score: 64
Period size: 24 Copynumber: 3.2 Consensus size: 23
90944746 TTTTGTTTAG
90944756 ATATATTGTTTTACATAAATATAA
1 ATATATTGTTTTA-ATAAATATAA
* * * * *
90944780 ATATTTTTTATTTAATTATTTTCAA
1 ATATATTGT-TTTAATAAATAT-AA
*
90944805 ATATAATGTTTTAAATAAATATAA
1 ATATATTGTTTT-AATAAATATAA
90944829 ATAT
1 ATAT
90944833 TTATTTAATT
Statistics
Matches: 39, Mismatches: 11, Indels: 6
0.70 0.20 0.11
Matches are distributed among these distances:
24 21 0.54
25 18 0.46
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (23 bp):
ATATATTGTTTTAATAAATATAA
Found at i:90944855 original size:99 final size:99
Alignment explanation
Indices: 90944684--90944889 Score: 412
Period size: 99 Copynumber: 2.1 Consensus size: 99
90944674 TTTCAAAACC
90944684 TTTTTTATTTAATTATTTTCAAATATAATGTTTTAAATAAATATAAATATTTATTTAATTTGTTT
1 TTTTTTATTTAATTATTTTCAAATATAATGTTTTAAATAAATATAAATATTTATTTAATTTGTTT
90944749 TGTTTAGATATATTGTTTTACATAAATATAAATA
66 TGTTTAGATATATTGTTTTACATAAATATAAATA
90944783 TTTTTTATTTAATTATTTTCAAATATAATGTTTTAAATAAATATAAATATTTATTTAATTTGTTT
1 TTTTTTATTTAATTATTTTCAAATATAATGTTTTAAATAAATATAAATATTTATTTAATTTGTTT
90944848 TGTTTAGATATATTGTTTTACATAAATATAAATA
66 TGTTTAGATATATTGTTTTACATAAATATAAATA
90944882 TTTTTTAT
1 TTTTTTAT
90944890 ATTATTTGTT
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
99 107 1.00
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (99 bp):
TTTTTTATTTAATTATTTTCAAATATAATGTTTTAAATAAATATAAATATTTATTTAATTTGTTT
TGTTTAGATATATTGTTTTACATAAATATAAATA
Found at i:90947847 original size:46 final size:47
Alignment explanation
Indices: 90947797--90947978 Score: 180
Period size: 46 Copynumber: 3.9 Consensus size: 47
90947787 CACTGACACA
* *
90947797 TCTCGTA-GCCGATGCATGTCCCAGACATGTCTTATACTAGCTTATG
1 TCTCGTAGGCCGATGCATGTCCCAAACATGTCTTACACTAGCTTATG
*
90947843 TCTCG-AGGCCGATGCATGTCCCAAACATGTCTTACACTAGCACT-TG
1 TCTCGTAGGCCGATGCATGTCCCAAACATGTCTTACACTAGC-TTATG
* * *
90947889 TCTC-AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-
1 TCTCGTAGGCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCT-T-ATG
** * *
90947938 AAT-GT-GGCCGATGCATGTCCCAGATATGTCTTACACTAGCT
1 TCTCGTAGGCCGATGCATGTCCCAAACATGTCTTACACTAGCT
90947979 CACAATAACC
Statistics
Matches: 114, Mismatches: 13, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
45 1 0.01
46 64 0.56
47 27 0.24
48 20 0.18
49 1 0.01
50 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
TCTCGTAGGCCGATGCATGTCCCAAACATGTCTTACACTAGCTTATG
Found at i:90947955 original size:47 final size:44
Alignment explanation
Indices: 90947758--90947979 Score: 146
Period size: 46 Copynumber: 4.8 Consensus size: 44
90947748 GTATATCTGT
* * * * * *
90947758 GCCGATGCCATGTCCTAGACATGGTCTTACACTGACACATCTC-GTA
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTC-TCTCAATG
* * * * *
90947804 GCCGATGCATGTCCCAGACATGTCTTATACTAGCTTATGTCTCGA-G
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGC---TCTCTCAATG
* *
90947850 GCCGATGCATGTCCCAAACATGTCTTACACTAGCACTTGTCTCAAT-
1 GCCGATGCATGTCCCAAACATGTCTTACACT-G-GC-TCTCTCAATG
90947896 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-AATGTG
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTCTC-TCAA--TG
* * *
90947944 GCCGATGCATGTCCCAGATATGTCTTACACTAGCTC
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTC
90947980 ACAATAACCC
Statistics
Matches: 144, Mismatches: 19, Indels: 26
0.76 0.10 0.14
Matches are distributed among these distances:
44 10 0.07
45 18 0.12
46 70 0.49
47 28 0.19
48 18 0.12
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (44 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTGGCTCTCTCAATG
Found at i:90949981 original size:12 final size:13
Alignment explanation
Indices: 90949964--90950001 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
90949954 ATCCTGGAAT
90949964 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
90949976 ATTAAGAACACATA
1 ATTAAGAACA-AGA
90949990 ATTAAGAACAAG
1 ATTAAGAACAAG
90950002 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:90965632 original size:30 final size:30
Alignment explanation
Indices: 90965592--90965651 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
90965582 AATGTTCTAA
*
90965592 TGATCTAAACTTAAAAAAAACCCTTTCATT
1 TGATCCAAACTTAAAAAAAACCCTTTCATT
* *
90965622 TGATCCAAACTTAAAACAACCCCTTTCATT
1 TGATCCAAACTTAAAAAAAACCCTTTCATT
90965652 CCTTCGGCCC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.40, C:0.25, G:0.03, T:0.32
Consensus pattern (30 bp):
TGATCCAAACTTAAAAAAAACCCTTTCATT
Found at i:90989569 original size:22 final size:21
Alignment explanation
Indices: 90989544--90989592 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
90989534 TTTATACTTA
90989544 AATTATTAACATAATTAATTTT
1 AATTATT-ACATAATTAATTTT
**
90989566 AATTAATTTTATAATTAATTTT
1 AATT-ATTACATAATTAATTTT
*
90989588 TATTA
1 AATTA
90989593 ATTTTGATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 1 0.04
22 19 0.83
23 3 0.13
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
AATTATTACATAATTAATTTT
Found at i:90989570 original size:10 final size:10
Alignment explanation
Indices: 90989555--90989606 Score: 61
Period size: 10 Copynumber: 5.1 Consensus size: 10
90989545 ATTATTAACA
90989555 TAATTAATTT
1 TAATTAATTT
90989565 TAATTAATTTT
1 TAATTAA-TTT
90989576 ATAATTAATTT
1 -TAATTAATTT
*
90989587 TTATTAATTT
1 TAATTAATTT
*
90989597 TGATT-ATTT
1 TAATTAATTT
90989606 T
1 T
90989607 TGATAGATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
9 5 0.13
10 20 0.53
11 6 0.16
12 7 0.18
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (10 bp):
TAATTAATTT
Found at i:90989593 original size:22 final size:22
Alignment explanation
Indices: 90989554--90989597 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
90989544 AATTATTAAC
90989554 ATAATTAATTTTAATTAATTTT
1 ATAATTAATTTTAATTAATTTT
*
90989576 ATAATTAATTTTTATTAATTTT
1 ATAATTAATTTTAATTAATTTT
90989598 GATTATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (22 bp):
ATAATTAATTTTAATTAATTTT
Found at i:90990218 original size:21 final size:21
Alignment explanation
Indices: 90990176--90990218 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
90990166 CAATTTTCTC
*
90990176 TCTTTATTTCTCGTCCATTTT
1 TCTTTATTTCTCGTCCAATTT
*
90990197 TCTTTA-TTCTCTTGCCAATTT
1 TCTTTATTTCTCGT-CCAATTT
90990218 T
1 T
90990219 ACCTCTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.12, C:0.23, G:0.05, T:0.60
Consensus pattern (21 bp):
TCTTTATTTCTCGTCCAATTT
Found at i:90996156 original size:26 final size:26
Alignment explanation
Indices: 90996126--90996178 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
90996116 CAAAACTTAA
90996126 GGTCCTTATATGGTAATTAGACCATT
1 GGTCCTTATATGGTAATTAGACCATT
90996152 GGTCCTTATATGGTAATTAGACCATT
1 GGTCCTTATATGGTAATTAGACCATT
90996178 G
1 G
90996179 AAGGGTAGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
GGTCCTTATATGGTAATTAGACCATT
Found at i:91001628 original size:94 final size:93
Alignment explanation
Indices: 91001523--91001693 Score: 225
Period size: 94 Copynumber: 1.8 Consensus size: 93
91001513 ACATCCTCGA
* * * * * ** *
91001523 GGTTGATGCATGTCTCAGACATGTCTTACACTGGCACTCACCTCTATGCCGATGCCTTGTCTCAG
1 GGTTGATGCATGTCCCAAACATGTATTACACTAGCACT-ACCTCAATGCCGATGCCACGTCCCAG
*
91001588 ACGTGGTCTTATAAGGGCTATCATGATGC
65 ACATGGTCTTATAAGGGCTATCATGATGC
* **
91001617 GGTTGATGCATGTCCCAAACATGTATTACACTAGCCCTGTCTCAATGCCGATGCCACGTCCCAGA
1 GGTTGATGCATGTCCCAAACATGTATTACACTAGCACTACCTCAATGCCGATGCCACGTCCCAGA
91001682 CATGGTCTTATA
66 CATGGTCTTATA
91001694 CTGGCTCTCA
Statistics
Matches: 65, Mismatches: 12, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
93 32 0.49
94 33 0.51
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (93 bp):
GGTTGATGCATGTCCCAAACATGTATTACACTAGCACTACCTCAATGCCGATGCCACGTCCCAGA
CATGGTCTTATAAGGGCTATCATGATGC
Found at i:91008787 original size:13 final size:13
Alignment explanation
Indices: 91008769--91008793 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91008759 AACCCAATTT
91008769 TTATTTTATTTTA
1 TTATTTTATTTTA
91008782 TTATTTTATTTT
1 TTATTTTATTTT
91008794 TGGATGTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTATTTTATTTTA
Found at i:91009033 original size:75 final size:74
Alignment explanation
Indices: 91008880--91009108 Score: 350
Period size: 75 Copynumber: 3.1 Consensus size: 74
91008870 AAAAAATTGC
*
91008880 AGCCAAATAGCCTTTATTCCATCCCTATTCTAGCCGGAATAGTGCGTTCCTGCCTTAGACTCCCC
1 AGCCAAATAGCCTTTATTCCATCCCTATTCTAGCTGGAATAGTGCGTTCCTGCCTTAGACTCCCC
*
91008945 AAAACCTGC
66 AAAACCTGT
* * * * * *
91008954 AGCCAAACAACCTTTATTCCATCCCTATTCTAGCATGGAATAGTGCGTTCTTACCCTAAACTCCC
1 AGCCAAATAGCCTTTATTCCATCCCTATTCTAGC-TGGAATAGTGCGTTCCTGCCTTAGACTCCC
91009019 CAAAACCTGT
65 CAAAACCTGT
* *
91009029 AGCCAAATAGCCTTTATTCCATCCCTATTATAGCCTGGAATAGTGCGTTCCTGCCTTAGACTCCA
1 AGCCAAATAGCCTTTATTCCATCCCTATTCTAG-CTGGAATAGTGCGTTCCTGCCTTAGACTCCC
91009094 CAAAACCTGT
65 CAAAACCTGT
91009104 AGCCA
1 AGCCA
91009109 GACACCCCCT
Statistics
Matches: 137, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
74 32 0.23
75 104 0.76
76 1 0.01
ACGTcount: A:0.27, C:0.32, G:0.14, T:0.28
Consensus pattern (74 bp):
AGCCAAATAGCCTTTATTCCATCCCTATTCTAGCTGGAATAGTGCGTTCCTGCCTTAGACTCCCC
AAAACCTGT
Found at i:91012144 original size:10 final size:10
Alignment explanation
Indices: 91012131--91012178 Score: 62
Period size: 10 Copynumber: 4.8 Consensus size: 10
91012121 TTATTTTCAT
91012131 TTATCTTTAA
1 TTATCTTTAA
91012141 TTATCTTTAA
1 TTATCTTTAA
*
91012151 TTATCTTTAT
1 TTATCTTTAA
*
91012161 TTAT-TTGTAT
1 TTATCTT-TAA
91012171 TTATCTTT
1 TTATCTTT
91012179 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.23, C:0.08, G:0.02, T:0.67
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:91012954 original size:39 final size:38
Alignment explanation
Indices: 91012906--91012982 Score: 118
Period size: 39 Copynumber: 2.0 Consensus size: 38
91012896 ATTTTTGAAA
91012906 TTCCAATCAAAACTTTTAATTCTATTTTTATTTTATTT
1 TTCCAATCAAAACTTTTAATTCTATTTTTATTTTATTT
* * *
91012944 TTCCAGATCAAAACTTTTAATTTTGTTTTTCTTTTATTT
1 TTCCA-ATCAAAACTTTTAATTCTATTTTTATTTTATTT
91012983 CTTTCCCAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
38 5 0.14
39 30 0.86
ACGTcount: A:0.26, C:0.13, G:0.03, T:0.58
Consensus pattern (38 bp):
TTCCAATCAAAACTTTTAATTCTATTTTTATTTTATTT
Found at i:91018810 original size:50 final size:51
Alignment explanation
Indices: 91018685--91018860 Score: 191
Period size: 50 Copynumber: 3.5 Consensus size: 51
91018675 TGAGGTCGCA
* * *
91018685 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACACGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACACGATAACTTAGATCACG
** *
91018736 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA-GAT-GGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CACGATAACTTAGATCACG
* * * *
91018786 TGTGTAGTACTAAGTGCAGACTACTACGTGTAC-CGGATAA-TT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACAC-GATAACTTAGATCACG
* *
91018835 TGTGTAGTACTATGTACAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
91018861 TGCGTACCAG
Statistics
Matches: 108, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
49 29 0.27
50 44 0.41
51 33 0.31
52 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACACGATAACTTAGATCACG
Found at i:91023876 original size:18 final size:18
Alignment explanation
Indices: 91023853--91023887 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
91023843 TCCTCGGGTG
91023853 ATAATCAATCAATAACTC
1 ATAATCAATCAATAACTC
**
91023871 ATAATCTTTCAATAACT
1 ATAATCAATCAATAACT
91023888 TGAGCCATCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAATCAATCAATAACTC
Found at i:91036533 original size:40 final size:40
Alignment explanation
Indices: 91036348--91036533 Score: 211
Period size: 40 Copynumber: 4.7 Consensus size: 40
91036338 GCTCCTCGTT
* * *
91036348 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
* *
91036388 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCA
*
91036428 CAAATGTCTTCGGGACTTAGCCCGGA-ATTAGTA-TCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTACT-TCGCA
* * *
91036468 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-ACTTCGCA
91036509 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
91036534 CATCATTCAA
Statistics
Matches: 124, Mismatches: 13, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
39 4 0.03
40 105 0.85
41 14 0.11
42 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
Found at i:91044533 original size:21 final size:22
Alignment explanation
Indices: 91044492--91044533 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
91044482 GTCTACGATT
91044492 TCACGAAATGATTATGGTCTAA
1 TCACGAAATGATTATGGTCTAA
91044514 TCACGAAATGATTA-GGTCTA
1 TCACGAAATGATTATGGTCTA
91044534 GTCAAAAGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (22 bp):
TCACGAAATGATTATGGTCTAA
Found at i:91052534 original size:22 final size:22
Alignment explanation
Indices: 91052508--91052550 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
91052498 GAAAATAATC
*
91052508 AAAATTAATCAAAATTAATTAT
1 AAAATCAATCAAAATTAATTAT
* *
91052530 AAAATCAATTAAAATTCATTA
1 AAAATCAATCAAAATTAATTA
91052551 CGTTAATAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (22 bp):
AAAATCAATCAAAATTAATTAT
Found at i:91059426 original size:20 final size:20
Alignment explanation
Indices: 91059384--91059426 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
91059374 TTATCTATGA
* * *
91059384 ATAACTTTTCAATTTCTACC
1 ATAAATTTTAAATTTCCACC
*
91059404 ATAAATTTTAAATTTCCAGC
1 ATAAATTTTAAATTTCCACC
91059424 ATA
1 ATA
91059427 TTCATCCATG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.19, G:0.02, T:0.42
Consensus pattern (20 bp):
ATAAATTTTAAATTTCCACC
Found at i:91081829 original size:22 final size:22
Alignment explanation
Indices: 91081801--91081844 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
91081791 ATATAGCATA
91081801 AATTTCTAGAATTGGAACTAAG
1 AATTTCTAGAATTGGAACTAAG
91081823 AATTTCTAGAATTGGAACTAAG
1 AATTTCTAGAATTGGAACTAAG
91081845 TATATGTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.09, G:0.18, T:0.32
Consensus pattern (22 bp):
AATTTCTAGAATTGGAACTAAG
Found at i:91089738 original size:17 final size:17
Alignment explanation
Indices: 91089716--91089750 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
91089706 TTTTTGGAAG
91089716 AAAGGCTGTGCTAAAAA
1 AAAGGCTGTGCTAAAAA
91089733 AAAGGCTGTGCTAAAAA
1 AAAGGCTGTGCTAAAAA
91089750 A
1 A
91089751 GTTACTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.11, G:0.23, T:0.17
Consensus pattern (17 bp):
AAAGGCTGTGCTAAAAA
Found at i:91089937 original size:9 final size:9
Alignment explanation
Indices: 91089880--91089943 Score: 56
Period size: 9 Copynumber: 6.8 Consensus size: 9
91089870 TTTAAATTAC
91089880 AAATTTTTA
1 AAATTTTTA
*
91089889 CAATTTTTA
1 AAATTTTTA
*
91089898 ATATTTTTTTA
1 A-A-ATTTTTA
*
91089909 TAATTTTTA
1 AAATTTTTA
*
91089918 CAATATTTTA
1 AAAT-TTTTA
91089928 AAATTTTTA
1 AAATTTTTA
*
91089937 ATATTTT
1 AAATTTT
91089944 AATATTATAT
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
9 28 0.64
10 10 0.23
11 6 0.14
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (9 bp):
AAATTTTTA
Found at i:91090507 original size:21 final size:21
Alignment explanation
Indices: 91090476--91090522 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 21
91090466 ATTTAATTTC
91090476 TTTTATAAAATTTA-TAAT-T
1 TTTTATAAAATTTAGTAATAT
91090495 TTTTATAATAAATTTAGTAATAT
1 TTTTAT-A-AAATTTAGTAATAT
91090518 TTTTA
1 TTTTA
91090523 GTTTAATTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 1 0.04
21 7 0.29
22 4 0.17
23 6 0.25
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
TTTTATAAAATTTAGTAATAT
Found at i:91101849 original size:29 final size:29
Alignment explanation
Indices: 91101816--91101875 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
91101806 ATTTATCTAC
91101816 AAGATAAATATTAAATTAAATCCAATATT
1 AAGATAAATATTAAATTAAATCCAATATT
* **
91101845 AAGATAAGTATTAAATTAAATTTAATATT
1 AAGATAAATATTAAATTAAATCCAATATT
91101874 AA
1 AA
91101876 ATTTATTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.37
Consensus pattern (29 bp):
AAGATAAATATTAAATTAAATCCAATATT
Found at i:91110965 original size:11 final size:11
Alignment explanation
Indices: 91110949--91110975 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
91110939 CTAAAATATC
91110949 TAGATAAAATA
1 TAGATAAAATA
91110960 TAGATAAAATA
1 TAGATAAAATA
91110971 TAGAT
1 TAGAT
91110976 TGATTCCTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.11, T:0.30
Consensus pattern (11 bp):
TAGATAAAATA
Found at i:91127176 original size:15 final size:15
Alignment explanation
Indices: 91127139--91127168 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
91127129 AAGACTTTTT
*
91127139 TTATAATAAATATCA
1 TTATAATAAAAATCA
91127154 TTATAATAAAAATCA
1 TTATAATAAAAATCA
91127169 GTTAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (15 bp):
TTATAATAAAAATCA
Found at i:91127975 original size:14 final size:14
Alignment explanation
Indices: 91127956--91127992 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
91127946 GCTTAATATT
91127956 TATTATAAACAATA
1 TATTATAAACAATA
* *
91127970 TATTATGAATAATA
1 TATTATAAACAATA
91127984 TATTATAAA
1 TATTATAAA
91127993 AAAATGAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (14 bp):
TATTATAAACAATA
Found at i:91129035 original size:24 final size:24
Alignment explanation
Indices: 91128993--91129041 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
91128983 ATTCAGATTC
* *
91128993 GTTACTTGGGGCTGATGAGGATGA
1 GTTACTTCGGGCTCATGAGGATGA
* *
91129017 GTTACTTCGGGCTCTTGAGGGTGA
1 GTTACTTCGGGCTCATGAGGATGA
91129041 G
1 G
91129042 GAATCCGTTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.16, C:0.12, G:0.41, T:0.31
Consensus pattern (24 bp):
GTTACTTCGGGCTCATGAGGATGA
Found at i:91132721 original size:11 final size:11
Alignment explanation
Indices: 91132699--91132733 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
91132689 TATTTATACT
91132699 TATATACATATG
1 TATAT-CATATG
*
91132711 TGTATCATATG
1 TATATCATATG
91132722 TATATCATATG
1 TATATCATATG
91132733 T
1 T
91132734 TATAAACATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.46
Consensus pattern (11 bp):
TATATCATATG
Found at i:91146670 original size:211 final size:211
Alignment explanation
Indices: 91146306--91146731 Score: 807
Period size: 211 Copynumber: 2.0 Consensus size: 211
91146296 TTTGACAAAG
* *
91146306 GGTGGGAAGACTTCGCCTTAGTATAATTGGGTAAATCACTATTAGGAGAATAAGGGAGCTTATGA
1 GGTGGGAAGACTTCGCCTTAGTATAATCGGGTAAATCACTATTAGGAGAATAAGGGAGCTTACGA
91146371 AAAGGGCTATCAAACGGCTGTGACTTTCAATTGGCCTTGTCTCGCTTAACTCGTCGAGTAATGAT
66 AAAGGGCTATCAAACGGCTGTGACTTTCAATTGGCCTTGTCTCGCTTAACTCGTCGAGTAATGAT
*
91146436 TATCCTAGAAGGAAGATCTGTTCGAAAGGTCTCGCCAAAAATCCGTATAATGATTAGCTCCTAGC
131 TATCCCAGAAGGAAGATCTGTTCGAAAGGTCTCGCCAAAAATCCGTATAATGATTAGCTCCTAGC
91146501 CCCTGCTTCTTGAATT
196 CCCTGCTTCTTGAATT
91146517 GGTGGGAAGACTTCGCCTTAGTATAATCGGGTAAATCACTATTAGGAGAATAAGGGAGCTTACGA
1 GGTGGGAAGACTTCGCCTTAGTATAATCGGGTAAATCACTATTAGGAGAATAAGGGAGCTTACGA
*
91146582 AAAGGGCTATCAAACGGCTGTGACTTTCAATTGGCCTTGTCTCGCTTAACTCGTCGAGTAGTGAT
66 AAAGGGCTATCAAACGGCTGTGACTTTCAATTGGCCTTGTCTCGCTTAACTCGTCGAGTAATGAT
*
91146647 TATCCCGGAAGGAAGATCTGTTCGAAAGGTCTCGCCAAAAATCCGTATAATGATTAGCTCCTAGC
131 TATCCCAGAAGGAAGATCTGTTCGAAAGGTCTCGCCAAAAATCCGTATAATGATTAGCTCCTAGC
91146712 CCCTGCTTCTTGAATT
196 CCCTGCTTCTTGAATT
91146728 GGTG
1 GGTG
91146732 ACCCATTCCG
Statistics
Matches: 210, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
211 210 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (211 bp):
GGTGGGAAGACTTCGCCTTAGTATAATCGGGTAAATCACTATTAGGAGAATAAGGGAGCTTACGA
AAAGGGCTATCAAACGGCTGTGACTTTCAATTGGCCTTGTCTCGCTTAACTCGTCGAGTAATGAT
TATCCCAGAAGGAAGATCTGTTCGAAAGGTCTCGCCAAAAATCCGTATAATGATTAGCTCCTAGC
CCCTGCTTCTTGAATT
Found at i:91167773 original size:40 final size:40
Alignment explanation
Indices: 91167721--91167992 Score: 445
Period size: 40 Copynumber: 6.8 Consensus size: 40
91167711 ATAACCACAA
* * * *
91167721 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
91167761 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
91167801 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
91167841 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA--TCAACTC
91167883 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
91167923 GCACAAATGCCTTCGGGTCTTAGTCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
91167963 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
91167993 GTATTCAAAT
Statistics
Matches: 217, Mismatches: 13, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
40 177 0.82
42 40 0.18
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:91167912 original size:122 final size:122
Alignment explanation
Indices: 91167721--91168000 Score: 458
Period size: 122 Copynumber: 2.3 Consensus size: 122
91167711 ATAACCACAA
* * * *
91167721 GCACAATTGCCTTCGGGTCTTAACCCGGGTATA-G-CAACTCGCACGAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
* *
91167784 CCCGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
66 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
91167841 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
* *
91167906 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGTCCGGATATATCAACTT
66 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
91167963 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAT-TCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAA
91168001 ATGCTCATGC
Statistics
Matches: 149, Mismatches: 9, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
120 30 0.20
121 5 0.03
122 114 0.77
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (122 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:91174010 original size:6 final size:6
Alignment explanation
Indices: 91173999--91174042 Score: 88
Period size: 6 Copynumber: 7.3 Consensus size: 6
91173989 ACCTATAGCC
91173999 TTAGAT TTAGAT TTAGAT TTAGAT TTAGAT TTAGAT TTAGAT TT
1 TTAGAT TTAGAT TTAGAT TTAGAT TTAGAT TTAGAT TTAGAT TT
91174043 TGATCTATGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (6 bp):
TTAGAT
Found at i:91196113 original size:27 final size:27
Alignment explanation
Indices: 91196075--91196141 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
91196065 GAGGGGGTGC
91196075 CAGAGGCGGCACCGGTTGTGCCTCTAG
1 CAGAGGCGGCACCGGTTGTGCCTCTAG
*
91196102 CAGAGGTGGCACCGGTTGTGCCTCTAG
1 CAGAGGCGGCACCGGTTGTGCCTCTAG
*
91196129 CAAAGGCGGCACC
1 CAGAGGCGGCACC
91196142 TCGTTTTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.18, C:0.30, G:0.36, T:0.16
Consensus pattern (27 bp):
CAGAGGCGGCACCGGTTGTGCCTCTAG
Done.