Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 275 of 333
Found at i:91196345 original size:27 final size:27
Alignment explanation
Indices: 91196307--91196360 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
91196297 GTCCCATCAA
*
91196307 GGTGCCGCCTCTACCAGAGGCACAACC
1 GGTGCCACCTCTACCAGAGGCACAACC
* *
91196334 GGTGCCACCTCTGCTAGAGGCACAACC
1 GGTGCCACCTCTACCAGAGGCACAACC
91196361 TCGATCTGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.22, C:0.39, G:0.26, T:0.13
Consensus pattern (27 bp):
GGTGCCACCTCTACCAGAGGCACAACC
Found at i:91219066 original size:26 final size:26
Alignment explanation
Indices: 91219037--91219144 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
91219027 TGCTACAAAT
91219037 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
91219063 TGATAATGGATTAGGTAAATATTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
91219089 TGATAATGGGTTAGGTAAATGCTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
91219115 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
91219141 TGAT
1 TGAT
91219145 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:91220778 original size:27 final size:27
Alignment explanation
Indices: 91220738--91220878 Score: 182
Period size: 27 Copynumber: 5.2 Consensus size: 27
91220728 AGGAAGCGTC
91220738 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
* *
91220765 TTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTATGCCACAAT-TATCTGAT
91220791 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTATGCCACAATTATCTGAT
* *
91220819 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
91220846 CTGGTGGCTATGCCACAA-TATCTGTAT
1 CTGGTGGCTATGCCACAATTATCTG-AT
91220873 CTGGTG
1 CTGGTG
91220879 ACTTCGTCAC
Statistics
Matches: 99, Mismatches: 8, Indels: 14
0.82 0.07 0.12
Matches are distributed among these distances:
26 11 0.11
27 84 0.85
28 4 0.04
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:91220817 original size:54 final size:54
Alignment explanation
Indices: 91220735--91220878 Score: 254
Period size: 54 Copynumber: 2.7 Consensus size: 54
91220725 TGGAGGAAGC
*
91220735 GTCCTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
91220789 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
91220843 GTTCTGGTGGCTATGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
91220879 ACTTCGTCAC
Statistics
Matches: 87, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
53 6 0.07
54 81 0.93
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:91220889 original size:27 final size:27
Alignment explanation
Indices: 91220738--91220896 Score: 138
Period size: 27 Copynumber: 5.9 Consensus size: 27
91220728 AGGAAGCGTC
91220738 CTGGTGGCTAT-GCCACAATTATCTG-AT
1 CTGGTGGCT-TCGCCACAA-TATCTGTAT
* *
91220765 TTGGTGGC-TCTGCCACATATATCTGT-C
1 CTGGTGGCTTC-GCCACA-ATATCTGTAT
91220792 CTGGTGGCTAT-GCCACAATTATCTG-AT
1 CTGGTGGCT-TCGCCACAA-TATCTGTAT
91220819 CTGGTGGC-TCTGCCACATATATCTGT-T
1 CTGGTGGCTTC-GCCACA-ATATCTGTAT
91220846 CTGGTGGCTAT-GCCACAATATCTGTAT
1 CTGGTGGCT-TCGCCACAATATCTGTAT
* *
91220873 CTGGTGACTTCGTCACAATATCTG
1 CTGGTGGCTTCGCCACAATATCTG
91220897 GCAGCCTCGC
Statistics
Matches: 110, Mismatches: 6, Indels: 32
0.74 0.04 0.22
Matches are distributed among these distances:
25 2 0.02
26 10 0.09
27 94 0.85
28 2 0.02
29 2 0.02
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTTCGCCACAATATCTGTAT
Found at i:91220890 original size:81 final size:80
Alignment explanation
Indices: 91220738--91220896 Score: 200
Period size: 81 Copynumber: 2.0 Consensus size: 80
91220728 AGGAAGCGTC
* *
91220738 CTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTATGCCACATATATCTGTCCTGGTGACTAT
91220803 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* *
91220819 CTGGTGGCTCTGCCAC-ATATATCTG-TTCTGGTGGCTATGCCACA-ATATCTGTATCTGGTGAC
1 CTGGTGGCTATGCCACAAT-TATCTGATT-TGGTGGCTATGCCACATATATCTGT-CCTGGTGAC
*
91220881 T-TCGTCACAATATCTG
63 TAT-GCCACAATATCTG
91220897 GCAGCCTCGC
Statistics
Matches: 69, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
80 19 0.28
81 50 0.72
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTATGCCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:91226101 original size:26 final size:26
Alignment explanation
Indices: 91226072--91226179 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
91226062 TGCTACAAAT
91226072 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
91226098 TGATAATGGATTAGGTAAATATTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
91226124 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
91226150 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
91226176 TGAT
1 TGAT
91226180 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:91227817 original size:27 final size:27
Alignment explanation
Indices: 91227777--91227917 Score: 173
Period size: 27 Copynumber: 5.2 Consensus size: 27
91227767 AGGAAGCGTC
91227777 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
* *
91227804 TTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTATGCCACAAT-TATCTGAT
91227830 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTATGCCACAATTATCTGAT
* * *
91227858 CTGGTGGCTCTGCCAC-ATATATTTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
91227885 CTGGTGGCTATGCCACAA-TATCTGTAT
1 CTGGTGGCTATGCCACAATTATCTG-AT
91227912 CTGGTG
1 CTGGTG
91227918 ACTTCGTCAC
Statistics
Matches: 97, Mismatches: 10, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
26 10 0.10
27 83 0.86
28 4 0.04
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:91227856 original size:54 final size:54
Alignment explanation
Indices: 91227774--91227917 Score: 245
Period size: 54 Copynumber: 2.7 Consensus size: 54
91227764 TGGAGGAAGC
*
91227774 GTCCTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
91227828 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATTT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
91227882 GTTCTGGTGGCTATGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
91227918 ACTTCGTCAC
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
53 6 0.07
54 80 0.93
ACGTcount: A:0.18, C:0.23, G:0.24, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:91227929 original size:81 final size:80
Alignment explanation
Indices: 91227777--91227935 Score: 191
Period size: 81 Copynumber: 2.0 Consensus size: 80
91227767 AGGAAGCGTC
* *
91227777 CTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTATGCCACATATATCTGTCCTGGTGACTAT
91227842 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * *
91227858 CTGGTGGCTCTGCCAC-ATATATTTG-TTCTGGTGGCTATGCCACA-ATATCTGTATCTGGTGAC
1 CTGGTGGCTATGCCACAAT-TATCTGATT-TGGTGGCTATGCCACATATATCTGT-CCTGGTGAC
*
91227920 T-TCGTCACAATATCTG
63 TAT-GCCACAATATCTG
91227936 GCAGCCTCGC
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
80 19 0.28
81 49 0.72
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTATGCCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:91231265 original size:19 final size:20
Alignment explanation
Indices: 91231228--91231278 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 20
91231218 TATATATTAT
* **
91231228 TTTATCTATTATTTGTTTA-
1 TTTATTTATTATTCCTTTAC
91231247 TTTATTTATTATTCCTTTAC
1 TTTATTTATTATTCCTTTAC
*
91231267 TTT-TTTAATATT
1 TTTATTTATTATT
91231279 TAAAATTGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 24 0.89
20 3 0.11
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.69
Consensus pattern (20 bp):
TTTATTTATTATTCCTTTAC
Found at i:91231552 original size:21 final size:22
Alignment explanation
Indices: 91231523--91231567 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
91231513 GTCGCTAGCA
*
91231523 TAGTATTTTTATTTTATTT-TT
1 TAGTATTTTTATTTCATTTATT
*
91231544 TAGTCTTTTTATTTCATTTATT
1 TAGTATTTTTATTTCATTTATT
91231566 TA
1 TA
91231568 TTTATTTATC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.71
Consensus pattern (22 bp):
TAGTATTTTTATTTCATTTATT
Found at i:91231988 original size:5 final size:5
Alignment explanation
Indices: 91231978--91232009 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
91231968 GGCCTTTTTC
91231978 ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA AT
1 ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA AT
91232010 CATATCTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTTA
Found at i:91232394 original size:16 final size:16
Alignment explanation
Indices: 91232373--91232411 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
91232363 ATCTCCACCA
*
91232373 AGCTTCCAACCCAATG
1 AGCTTCCAACCCAACG
91232389 AGCTTCCAACCCAACG
1 AGCTTCCAACCCAACG
91232405 AGCTTCC
1 AGCTTCC
91232412 GAAGTACTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.28, C:0.41, G:0.13, T:0.18
Consensus pattern (16 bp):
AGCTTCCAACCCAACG
Found at i:91239488 original size:44 final size:44
Alignment explanation
Indices: 91239377--91239526 Score: 133
Period size: 44 Copynumber: 3.3 Consensus size: 44
91239367 TAAAACCACA
* *
91239377 AATCCTATACCCCTAAAGTTTCAGT-GAGTCAGATTGAATCTGCCATAGCG
1 AATCCTATATCCCTAAAGTTACAGTAGAG-CAGATTGAA---G-C-TA-CG
* * **
91239427 AATCTTATCTCCCTAAAGTTGTAGTAGAGCAAGA-TGAAGCTACG
1 AATCCTATATCCCTAAAGTTACAGTAGAGC-AGATTGAAGCTACG
* * *
91239471 AATCCTATATCCCTAAAGTTACAGTGGATCAGATTGAAGCTACA
1 AATCCTATATCCCTAAAGTTACAGTAGAGCAGATTGAAGCTACG
91239515 AATCCTATATCC
1 AATCCTATATCC
91239527 TATATTCTTG
Statistics
Matches: 85, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
43 3 0.04
44 47 0.55
45 2 0.02
46 1 0.01
47 1 0.01
50 25 0.29
51 6 0.07
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (44 bp):
AATCCTATATCCCTAAAGTTACAGTAGAGCAGATTGAAGCTACG
Found at i:91239772 original size:44 final size:44
Alignment explanation
Indices: 91239721--91239859 Score: 161
Period size: 44 Copynumber: 3.2 Consensus size: 44
91239711 ATCCTACTCT
* *
91239721 CTGAAGTTACAATGGAACAAAATGAAGCTACAAATCCTATACCC
1 CTGAAGTTGCAATGGAATAAAATGAAGCTACAAATCCTATACCC
* * * *
91239765 CTGAAGTTGCAATGGAGTAAGATGAAGTTACAATTCCTATACCC
1 CTGAAGTTGCAATGGAATAAAATGAAGCTACAAATCCTATACCC
** ** * * *
91239809 CTGAAGTTGCAATGGGTTGGAATGAGGCTACAAATCCTACACCT
1 CTGAAGTTGCAATGGAATAAAATGAAGCTACAAATCCTATACCC
91239853 CTGAAGT
1 CTGAAGT
91239860 CACAGTGGGT
Statistics
Matches: 79, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 79 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24
Consensus pattern (44 bp):
CTGAAGTTGCAATGGAATAAAATGAAGCTACAAATCCTATACCC
Found at i:91239772 original size:93 final size:94
Alignment explanation
Indices: 91239558--91239779 Score: 288
Period size: 93 Copynumber: 2.4 Consensus size: 94
91239548 GATTGGATTA
* * * *
91239558 AAGATACAATTCTTATACCCCTAAAGTTGCAGTGGGTTGGAATGAAACTCAAATGGTGAATCTTA
1 AAGATACAATTCCTATACCCCTAAAGTTGCAATGGGTTGGAATGAAACTCAAATGGCGAATCCTA
* * *
91239623 TCTCCCTGAAGTTGCAATGGAGCAAGATG
66 TCTCCCTGAAGTTACAATGGAACAAAATG
* *
91239652 AAGATATAATTCCTATACCCCTAAAGTTGCAATGGGTCT-GAATGAAACT-ACGATGGCGAATCC
1 AAGATACAATTCCTATACCCCTAAAGTTGCAATGGGT-TGGAATGAAACTCA-AATGGCGAATCC
*
91239715 TA-CTCTCTGAAGTTACAATGGAACAAAATG
64 TATCTCCCTGAAGTTACAATGGAACAAAATG
* * *
91239745 AAGCTACAAATCCTATACCCCTGAAGTTGCAATGG
1 AAGATACAATTCCTATACCCCTAAAGTTGCAATGG
91239780 AGTAAGATGA
Statistics
Matches: 112, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
93 56 0.50
94 55 0.49
95 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (94 bp):
AAGATACAATTCCTATACCCCTAAAGTTGCAATGGGTTGGAATGAAACTCAAATGGCGAATCCTA
TCTCCCTGAAGTTACAATGGAACAAAATG
Found at i:91246328 original size:13 final size:13
Alignment explanation
Indices: 91246312--91246355 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
91246302 TTATTTATAA
91246312 ATTTTATTATTTT
1 ATTTTATTATTTT
91246325 ATTTTAATTATTATT
1 ATTTT-ATTATT-TT
*
91246340 A-TTTATTATTTA
1 ATTTTATTATTTT
91246352 ATTT
1 ATTT
91246356 ATAAATAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 2 0.07
13 13 0.48
14 9 0.33
15 3 0.11
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
ATTTTATTATTTT
Found at i:91246340 original size:20 final size:21
Alignment explanation
Indices: 91246301--91246343 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
91246291 AAAAAAATAG
91246301 TTTATTTATAAATTTTATTAT
1 TTTATTTATAAATTTTATTAT
91246322 TTTATTT-T-AATTATTATTAT
1 TTTATTTATAAATT-TTATTAT
91246342 TT
1 TT
91246344 ATTATTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 10 0.48
21 7 0.33
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTATTTATAAATTTTATTAT
Found at i:91259937 original size:18 final size:18
Alignment explanation
Indices: 91259914--91259948 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
91259904 TGTTAATATA
91259914 GGAGTAAATCCCTGATTG
1 GGAGTAAATCCCTGATTG
*
91259932 GGAGTAAATCCTTGATT
1 GGAGTAAATCCCTGATT
91259949 AGGATTTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (18 bp):
GGAGTAAATCCCTGATTG
Found at i:91268414 original size:41 final size:41
Alignment explanation
Indices: 91268330--91268445 Score: 119
Period size: 41 Copynumber: 2.8 Consensus size: 41
91268320 AAACGCCACT
* * * *
91268330 AAAAACAAAGTAATAGTGGCGCTTTTGGTAAAATGCCTATA
1 AAAAACAAAGCAATAGCGGCGCTTTTGGTAAAATACCGATA
* *
91268371 AAAAACAAAGCATTAGCGGCGCTTTTGGTAAAATACCGCT-
1 AAAAACAAAGCAATAGCGGCGCTTTTGGTAAAATACCGATA
* *
91268411 AAAAACTAGAGCAATAGTGGCG-TTTATGGTCAAAA
1 AAAAAC-AAAGCAATAGCGGCGCTTT-TGGT-AAAA
91268446 CACCACTAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
40 9 0.14
41 50 0.79
42 4 0.06
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.24
Consensus pattern (41 bp):
AAAAACAAAGCAATAGCGGCGCTTTTGGTAAAATACCGATA
Found at i:91269069 original size:24 final size:24
Alignment explanation
Indices: 91269042--91269090 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
91269032 CGTATATTTA
91269042 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
91269066 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
91269090 T
1 T
91269091 GTTATTTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (24 bp):
TTAAAAGTTTATATAAAAATTAAT
Found at i:91269386 original size:7 final size:7
Alignment explanation
Indices: 91269376--91269409 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
91269366 ATTTTAAGGT
91269376 TTATGGA
1 TTATGGA
91269383 TTATGGA
1 TTATGGA
*
91269390 TTATGGGT
1 TTAT-GGA
91269398 TTATGGA
1 TTATGGA
91269405 TTATG
1 TTATG
91269410 ATTGAAGGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (7 bp):
TTATGGA
Found at i:91269419 original size:22 final size:22
Alignment explanation
Indices: 91269369--91269420 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
91269359 AGTTACTATT
91269369 TTAA-GGTTTATGGATTATGGA
1 TTAAGGGTTTATGGATTATGGA
*
91269390 TTATGGGTTTATGGATTAT-GA
1 TTAAGGGTTTATGGATTATGGA
91269411 TTGAAGGGTT
1 TT-AAGGGTT
91269421 GGAGTTTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 7 0.26
22 20 0.74
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (22 bp):
TTAAGGGTTTATGGATTATGGA
Found at i:91269872 original size:22 final size:22
Alignment explanation
Indices: 91269821--91269872 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
91269811 ATATTTATTT
91269821 AAAATCAATATAAAATATATAA
1 AAAATCAATATAAAATATATAA
* *
91269843 TAATTCAATATAAAA-ATTATAA
1 AAAATCAATATAAAATA-TATAA
91269865 AAAATCAA
1 AAAATCAA
91269873 ATATTAGGGG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 1 0.04
22 24 0.96
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (22 bp):
AAAATCAATATAAAATATATAA
Found at i:91270078 original size:72 final size:71
Alignment explanation
Indices: 91269993--91270141 Score: 201
Period size: 72 Copynumber: 2.1 Consensus size: 71
91269983 CATGTCATTT
* *
91269993 TATTTCTCTCCCCCCCAATTCCC-TTCTTTCCCGATTCCAATTTCTTTCTCAGCCATTCTCAGCC
1 TATTTCTCT--CCCCCAATTCCCTTTCTTTCCCAATTCCAATTTCTTTCTCAGCCATTCTCAACC
91270057 TGTACTTC
64 TGTACTTC
* ** *
91270065 TATTTCTCTCCCCCGATTCCCTTTTCTTTCCCAATTCCCTTTTCTTTCTCAGCCTTTCTCAACCT
1 TATTTCTCTCCCCCAATTCCC-TTTCTTTCCCAATTCCAATTTCTTTCTCAGCCATTCTCAACCT
*
91270130 GTTCTTC
65 GTACTTC
91270137 TATTT
1 TATTT
91270142 TATACCCGAA
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
70 11 0.16
72 57 0.84
ACGTcount: A:0.12, C:0.38, G:0.05, T:0.45
Consensus pattern (71 bp):
TATTTCTCTCCCCCAATTCCCTTTCTTTCCCAATTCCAATTTCTTTCTCAGCCATTCTCAACCTG
TACTTC
Found at i:91270090 original size:20 final size:18
Alignment explanation
Indices: 91270075--91270110 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
91270065 TATTTCTCTC
*
91270075 CCCCGATTCCCTTTTCTT
1 CCCCAATTCCCTTTTCTT
*
91270093 TCCCAATTCCCTTTTCTT
1 CCCCAATTCCCTTTTCTT
91270111 TCTCAGCCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.08, C:0.42, G:0.03, T:0.47
Consensus pattern (18 bp):
CCCCAATTCCCTTTTCTT
Found at i:91271761 original size:21 final size:21
Alignment explanation
Indices: 91271737--91271777 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
91271727 GTGCAAATCT
* *
91271737 AGGATCTAAAAGCAAGAGAGA
1 AGGAACTAAAAGCAAAAGAGA
*
91271758 AGGAACTTAAAGCAAAAGAG
1 AGGAACTAAAAGCAAAAGAG
91271778 GCCGAACTGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.54, C:0.10, G:0.27, T:0.10
Consensus pattern (21 bp):
AGGAACTAAAAGCAAAAGAGA
Found at i:91273608 original size:25 final size:25
Alignment explanation
Indices: 91273508--91273599 Score: 157
Period size: 25 Copynumber: 3.7 Consensus size: 25
91273498 TCCGCATCGT
* *
91273508 CGTCGGCAGCCTTCTGCTACATCTC
1 CGTCGGCATCCCTCTGCTACATCTC
*
91273533 CGTTGGCATCCCTCTGCTACATCTC
1 CGTCGGCATCCCTCTGCTACATCTC
91273558 CGTCGGCATCCCTCTGCTACATCTC
1 CGTCGGCATCCCTCTGCTACATCTC
91273583 CGTCGGCATCCCTCTGC
1 CGTCGGCATCCCTCTGC
91273600 CGCTTCTCCA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.11, C:0.42, G:0.18, T:0.28
Consensus pattern (25 bp):
CGTCGGCATCCCTCTGCTACATCTC
Found at i:91274049 original size:12 final size:10
Alignment explanation
Indices: 91274016--91274046 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
91274006 AATTATATAC
91274016 AATTTTTTAT
1 AATTTTTTAT
91274026 AATTTTTTAT
1 AATTTTTTAT
*
91274036 AATTATTTAT
1 AATTTTTTAT
91274046 A
1 A
91274047 TAACTCTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
AATTTTTTAT
Found at i:91274539 original size:23 final size:23
Alignment explanation
Indices: 91274513--91274662 Score: 139
Period size: 23 Copynumber: 6.5 Consensus size: 23
91274503 AAGTGTTGTT
*
91274513 AATTG-AGATGTTAAAGTGCTACA
1 AATTGAAG-TGTTAAAGTGCTGCA
*
91274536 AATTGAAGTGTTTAAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
91274559 AATTGAAGTGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* * *
91274582 AATTGAAGTGTTTGAA-CGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
* *
91274605 AATTGAAGTGTTTGAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
*
91274628 AATTGAAGTGCTTAAA-TGTTGCA
1 AATTGAAGTG-TTAAAGTGCTGCA
*
91274651 AATTGAATTGTT
1 AATTGAAGTGTT
91274663 TCAGTACTTA
Statistics
Matches: 111, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
22 7 0.06
23 93 0.84
24 11 0.10
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (23 bp):
AATTGAAGTGTTAAAGTGCTGCA
Found at i:91274586 original size:69 final size:69
Alignment explanation
Indices: 91274530--91274663 Score: 198
Period size: 69 Copynumber: 1.9 Consensus size: 69
91274520 ATGTTAAAGT
91274530 GCTACAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTG-TTAAAGTGCTGCAAATTGAAGTGTT
1 GCTACAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAA-TGCTGCAAATTGAAGTGTT
*
91274594 TGAAC
65 TAAAC
** * * *
91274599 GCTGTAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAATTGTTT
1 GCTACAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGCTGCAAATTGAAGTGTTT
91274664 CAGTACTTAT
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
69 54 0.92
70 5 0.08
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (69 bp):
GCTACAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGCTGCAAATTGAAGTGTTT
AAAC
Found at i:91274663 original size:46 final size:47
Alignment explanation
Indices: 91274523--91274663 Score: 187
Period size: 46 Copynumber: 3.0 Consensus size: 47
91274513 AATTGAGATG
*
91274523 TTAAAGTGCTACAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTG-
1 TTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGT
* *
91274569 TTAAAGTGCTGCAAATTGAAGTGTTTGAACGCTGTAAATTGAAGTGT
1 TTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGT
* * * * * *
91274616 TTGAA-TGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAATTGT
1 TTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGT
91274662 TT
1 TT
91274664 CAGTACTTAT
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
46 79 0.95
47 4 0.05
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (47 bp):
TTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGT
Found at i:91276321 original size:43 final size:43
Alignment explanation
Indices: 91276268--91276603 Score: 226
Period size: 43 Copynumber: 7.6 Consensus size: 43
91276258 TTTTAGAAAG
91276268 CGCCGCTAAAGAACGTGACCTTTAGCTGCGCTTTTCACACAAA
1 CGCCGCTAAAGAACGTGACCTTTAGCTGCGCTTTTCACACAAA
* * * * *
91276311 CGCCGTTAAAGAATGTGTCCTTTAGCGTCTTTAGCGGCACTTTTCTCAAAAA
1 CGCCGCTAAAGAACGTGACCTTTA--G-C--T-GC-G--CTTTTCACACAAA
* * *
91276363 TGTCGCTAAAGAACGTGACCTTTAG-TGGTGCTTTTCACACAAA
1 CGCCGCTAAAGAACGTGACCTTTAGCT-GCGCTTTTCACACAAA
* * * * * * * *
91276406 TGCCGCTAAAGAATGTGTCATTTAGCGGCGATTTTCTCAAAAA
1 CGCCGCTAAAGAACGTGACCTTTAGCTGCGCTTTTCACACAAA
* *
91276449 CGCCGCTAAAGAATGTGACCTTTAGC-GTCGCTTTTCATACAAA
1 CGCCGCTAAAGAACGTGACCTTTAGCTG-CGCTTTTCACACAAA
** * * * * * *
91276492 TACCACTAAAGAACATAACATTTAGCGGCGCTTTTCATACAAA
1 CGCCGCTAAAGAACGTGACCTTTAGCTGCGCTTTTCACACAAA
* * * * ** * * *
91276535 CACCACTAAAGAACATAACCTTTAGCAACACTTTTCTCAAAAA
1 CGCCGCTAAAGAACGTGACCTTTAGCTGCGCTTTTCACACAAA
* *
91276578 TGTCGCTAAAGAACGTGACCTTTAGC
1 CGCCGCTAAAGAACGTGACCTTTAGC
91276604 AACGCTTGTA
Statistics
Matches: 230, Mismatches: 51, Indels: 24
0.75 0.17 0.08
Matches are distributed among these distances:
42 1 0.00
43 188 0.82
44 1 0.00
45 2 0.01
46 3 0.01
48 1 0.00
49 2 0.01
50 2 0.01
52 30 0.13
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (43 bp):
CGCCGCTAAAGAACGTGACCTTTAGCTGCGCTTTTCACACAAA
Found at i:91276354 original size:52 final size:52
Alignment explanation
Indices: 91276287--91276387 Score: 121
Period size: 52 Copynumber: 1.9 Consensus size: 52
91276277 AGAACGTGAC
* * * * * *
91276287 CTTTAGCTGCGCTTTTCACACAAACGCCGTTAAAGAATGTGTCCTTTAGCGT
1 CTTTAGCGGCACTTTTCACAAAAACGCCGCTAAAGAACGTGACCTTTAGCGT
* * *
91276339 CTTTAGCGGCACTTTTCTCAAAAATGTCGCTAAAGAACGTGACCTTTAG
1 CTTTAGCGGCACTTTTCACAAAAACGCCGCTAAAGAACGTGACCTTTAG
91276388 TGGTGCTTTT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
52 40 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.32
Consensus pattern (52 bp):
CTTTAGCGGCACTTTTCACAAAAACGCCGCTAAAGAACGTGACCTTTAGCGT
Found at i:91276485 original size:86 final size:86
Alignment explanation
Indices: 91276340--91276591 Score: 249
Period size: 86 Copynumber: 2.9 Consensus size: 86
91276330 CTTTAGCGTC
* * *
91276340 TTTAGCGGC-ACTTTTCTCAAAAATGTCGCTAAAGAACGTGACCTTTAGTGGT-GCTTTTCACAC
1 TTTAGCGGCGA-TTTTCTCAAAAACGCCGCTAAAGAACGTGACCTTTAG-CGTCGCTTTTCACAC
** **
91276403 AAATGCCGCTAAAGAATGTGTCA
64 AAATGCCGCTAAAGAACATAACA
* *
91276426 TTTAGCGGCGATTTTCTCAAAAACGCCGCTAAAGAATGTGACCTTTAGCGTCGCTTTTCATACAA
1 TTTAGCGGCGATTTTCTCAAAAACGCCGCTAAAGAACGTGACCTTTAGCGTCGCTTTTCACACAA
* *
91276491 ATACCACTAAAGAACATAACA
66 ATGCCGCTAAAGAACATAACA
* * * * * * ** * * *
91276512 TTTAGCGGCGCTTTTCAT-ACAAACACCACTAAAGAACATAACCTTTAGCAACACTTTTCTCAAA
1 TTTAGCGGCGATTTTC-TCAAAAACGCCGCTAAAGAACGTGACCTTTAGCGTCGCTTTTCACACA
*
91276576 AATGTCGCTAAAGAAC
65 AATGCCGCTAAAGAAC
91276592 GTGACCTTTA
Statistics
Matches: 136, Mismatches: 27, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
85 2 0.01
86 132 0.97
87 2 0.01
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (86 bp):
TTTAGCGGCGATTTTCTCAAAAACGCCGCTAAAGAACGTGACCTTTAGCGTCGCTTTTCACACAA
ATGCCGCTAAAGAACATAACA
Found at i:91279212 original size:32 final size:32
Alignment explanation
Indices: 91279170--91279232 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
91279160 ATGCTTACCA
*
91279170 TGCCCTTCATCCATTAACTATTAAAATGCTAT
1 TGCCCATCATCCATTAACTATTAAAATGCTAT
*
91279202 TGCCCATCATCTATTAACTATTAAAATGCTA
1 TGCCCATCATCCATTAACTATTAAAATGCTA
91279233 AAATGCATAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.33, C:0.24, G:0.06, T:0.37
Consensus pattern (32 bp):
TGCCCATCATCCATTAACTATTAAAATGCTAT
Found at i:91296604 original size:27 final size:27
Alignment explanation
Indices: 91296573--91296750 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
91296563 TAAATTGTAC
*
91296573 AGCACTAAGGGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
91296600 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91296626 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
91296654 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
91296682 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
91296709 AGCACTAGGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
91296736 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
91296751 GACTCGATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:91296687 original size:82 final size:81
Alignment explanation
Indices: 91296574--91296729 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
91296564 AAATTGTACA
*
91296574 GCACTAAGGGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGGGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
91296638 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** * *
91296655 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAGGTG
1 GCACTAAGGGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
91296720 TGCGAGTTGA
65 TGCGAATTGA
91296730 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 14 0.21
82 51 0.77
83 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGGGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:91296741 original size:82 final size:81
Alignment explanation
Indices: 91296570--91296750 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
91296560 GATTAAATTG
* *
91296570 TACAGCACTAAGGGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
91296635 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
91296651 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* * **
91296715 AGGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
91296733 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
91296751 GACTCGATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 17 0.20
82 66 0.80
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:91298425 original size:3 final size:3
Alignment explanation
Indices: 91298407--91298482 Score: 54
Period size: 3 Copynumber: 25.3 Consensus size: 3
91298397 GAGGGCATAT
91298407 ATA AT- ATA AT- ATA ATA ATA ATA TATA CATGA GA-A ATA ATA ATA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA -AT-A -ATA ATA ATA ATA ATA
* *
91298452 ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
91298483 AACAAAGCTC
Statistics
Matches: 59, Mismatches: 6, Indels: 16
0.73 0.07 0.20
Matches are distributed among these distances:
2 9 0.15
3 41 0.69
4 7 0.12
5 2 0.03
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:91298429 original size:21 final size:20
Alignment explanation
Indices: 91298405--91298481 Score: 75
Period size: 21 Copynumber: 3.6 Consensus size: 20
91298395 GAGAGGGCAT
91298405 ATATAATATAATATAATAATA
1 ATATAA-ATAATATAATAATA
*
91298426 ATATATACATGAGAAATAATAATA
1 ATATA-A-AT-A-ATATAATAATA
*
91298450 ATATAAATAATAGTAAAAATA
1 ATATAAATAATA-TAATAATA
91298471 ATA-AAATAATA
1 ATATAAATAATA
91298482 AAACAAAGCT
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
20 10 0.21
21 16 0.33
22 5 0.10
23 2 0.04
24 15 0.31
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (20 bp):
ATATAAATAATATAATAATA
Found at i:91298470 original size:24 final size:26
Alignment explanation
Indices: 91298417--91298479 Score: 73
Period size: 24 Copynumber: 2.6 Consensus size: 26
91298407 ATAATATAAT
91298417 ATAATAATAATAT--ATACATGAGAA
1 ATAATAATAATATAAATACATGAGAA
91298441 ATAATAATAATATAAATA-AT-AGTAA
1 ATAATAATAATATAAATACATGAG-AA
*
91298466 A-AATAATAAAATAA
1 ATAATAATAATATAA
91298480 TAAAACAAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
24 27 0.77
25 5 0.14
26 3 0.09
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.29
Consensus pattern (26 bp):
ATAATAATAATATAAATACATGAGAA
Found at i:91298831 original size:26 final size:25
Alignment explanation
Indices: 91298782--91298831 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
91298772 AAAAACTAGC
* *
91298782 TTTTCCAAGAAACAAAAATAACCTT
1 TTTTCCAAAAAACAAAAAAAACCTT
91298807 TTTTCCAAAAAACAAAAAAACACCT
1 TTTTCCAAAAAACAAAAAAA-ACCT
91298832 CCAAAAAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 18 0.82
26 4 0.18
ACGTcount: A:0.52, C:0.22, G:0.02, T:0.24
Consensus pattern (25 bp):
TTTTCCAAAAAACAAAAAAAACCTT
Found at i:91298837 original size:19 final size:21
Alignment explanation
Indices: 91298814--91298863 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
91298804 CTTTTTTCCA
91298814 AAAAACAAAAAAACAC-C-TCC
1 AAAAACAAAAAAAC-CTCATCC
91298834 AAAAAACAAAAAAACCTCATCC
1 -AAAAACAAAAAAACCTCATCC
91298856 -AAAACAAA
1 AAAAACAAA
91298864 GAACAATCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.33
21 15 0.56
22 3 0.11
ACGTcount: A:0.68, C:0.26, G:0.00, T:0.06
Consensus pattern (21 bp):
AAAAACAAAAAAACCTCATCC
Found at i:91299451 original size:44 final size:44
Alignment explanation
Indices: 91299403--91299866 Score: 424
Period size: 44 Copynumber: 10.6 Consensus size: 44
91299393 TCTTCGATCC
* * *
91299403 GTTCCTTATAAGCACAGGGATCCCAAATCTGCTGTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
* ** * * *
91299447 GTTCCCTATAAGCACAGGGATGTC--ATGCTGAAATCTTCGATCTA
1 GTTCCCTATAAGCACAGGGATGCCAAAT-CTGATGTTTTC-AACTT
* * * * * * * * *
91299491 GTTCACTGTAAGCACAGGAATGTCAAATCTGCTATCTTCGA-TCC
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACT-T
*
91299535 GTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
91299579 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
** * *
91299623 GTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-T
1 GTTCCCTATAAGCACAGGGATGCCAAAT-CTGATGT-TTTCAACTT
* * * * * * * * * *
91299666 GCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCC
1 G-TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACT-T
*
91299711 GTTCCCTATAAGCACAGGGATACCAAATCTGATGTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
* *
91299755 GTTCTCTATAAGCACAGGAATGCCAAATCTGATGTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
* ** *
91299799 GTTCCCTATAAGCACAGGGATGCC--ATGCTAAAATCTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAAT-CTGATGTTTTCAACTT
*
91299842 GTTCCCTATAAGTACAGGGATGCCA
1 GTTCCCTATAAGCACAGGGATGCCA
91299867 TGCTGAAATC
Statistics
Matches: 341, Mismatches: 63, Indels: 32
0.78 0.14 0.07
Matches are distributed among these distances:
42 6 0.02
43 50 0.15
44 264 0.77
45 17 0.05
46 4 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (44 bp):
GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
Found at i:91299503 original size:88 final size:87
Alignment explanation
Indices: 91299409--91299866 Score: 467
Period size: 88 Copynumber: 5.2 Consensus size: 87
91299399 ATCCGTTCCT
* * *
91299409 TATAAGCACAGGGATCCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGTCATG
1 TATAAGCACAGGAATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATG
* *
91299474 CTGAAATCTTCGATCTAGTTCAC
66 CTGAAATCTTC-AACTTGTTCAC
* * * * * *
91299497 TGTAAGCACAGGAATGTCAAATCTGCTATCTTCGA-TCCGTTCCCTATAAGCACAGGGATGCCAA
1 TATAAGCACAGGAATGCCAAATCTGCTGTTTTCAACT-TGTTCCCTATAAGCACAGGGATGCC--
*** * *
91299561 AT-CTGTTGTTTTCAACTTGTTCCC
63 ATGCTGAAATCTTCAACTTGTTCAC
* *
91299585 TATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATG
1 TATAAGCACAGGAATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATG
**
91299650 CTGAAATCTTTGA-TCTGCTTCAC
66 CTGAAATCTTCAACT-TG-TTCAC
* * * * * * * *
91299673 TGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCCGTTCCCTATAAGCACAGGGATACCAA
1 TATAAGCACAGGAATGCCAAATCTGCTGTTTTCAACT-TGTTCCCTATAAGCACAGGGATGCC--
** * *
91299737 AT-CTGATGTTTTCAACTTGTTCTC
63 ATGCTGAAATCTTCAACTTGTTCAC
*
91299761 TATAAGCACAGGAATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATG
1 TATAAGCACAGGAATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATG
* *
91299826 CTAAAATCTTCAACTTGTTCCC
66 CTGAAATCTTCAACTTGTTCAC
* *
91299848 TATAAGTACAGGGATGCCA
1 TATAAGCACAGGAATGCCA
91299867 TGCTGAAATC
Statistics
Matches: 294, Mismatches: 63, Indels: 27
0.77 0.16 0.07
Matches are distributed among these distances:
86 5 0.02
87 45 0.15
88 220 0.75
89 19 0.06
90 5 0.02
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (87 bp):
TATAAGCACAGGAATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATG
CTGAAATCTTCAACTTGTTCAC
Found at i:91299584 original size:132 final size:131
Alignment explanation
Indices: 91299347--91299925 Score: 512
Period size: 132 Copynumber: 4.4 Consensus size: 131
91299337 GATATCTGCT
* * * * *
91299347 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATTTGCTATCTTCGATCCGTTCCTTAT
1 ATCTTCGATCTG-TTCACTGTAAGCACAGGAATGTCAAATCTGATATCTTCGATCCGTTCCCTAT
* * * *
91299412 AAGCACAGGGATCCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGTC-ATGCT
65 AAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAT-CT
91299476 GAA
129 GAA
*
91299479 ATCTTCGATCTAGTTCACTGTAAGCACAGGAATGTCAAATCTGCTATCTTCGATCCGTTCCCTAT
1 ATCTTCGATCT-GTTCACTGTAAGCACAGGAATGTCAAATCTGATATCTTCGATCCGTTCCCTAT
* * *
91299544 AAGCACAGGGATGCCAAATCTGTTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCT
65 AAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCC-AATCT
*
91299609 GAT
129 GAA
* * * * * * * * * * *
91299612 GTTTTC-AACTTGTTCCCTATAAGCACAGGGATG-C-CATGCTGAAATCTTTGATCTGCTTCACT
1 ATCTTCGATC-TGTTCACTGTAAGCACAGGAATGTCAAAT-CTGATATCTTCGATCCG-TTCCCT
* * * * * * *
91299674 GTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCCGTTCCCTATAAGCACAGGGATACCAAA
63 ATAAGCACAGGGATGCCAAATCTGCTATCTTCAACT-TGTTCCCTATAAGCACAGGGATGCC-AA
*
91299738 TCTGAT
126 TCTGAA
* * * * * * * * * *
91299744 GTTTTC-AACTTGTTCTCTATAAGCACAGGAATGCCAAATCTGATGTTTTC-AACTTGTTCCCTA
1 ATCTTCGATC-TGTTCACTGTAAGCACAGGAATGTCAAATCTGATATCTTCGATC-CGTTCCCTA
*** *
91299807 TAAGCACAGGGATGCC--ATGCTAAAATCTTCAACTTGTTCCCTATAAGTACAGGGATGCC-ATG
64 TAAGCACAGGGATGCCAAAT-CTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAT-
91299869 CTGAA
127 CTGAA
* * *
91299874 ATCTTGGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGTTATCTTCG
1 ATCTTCGATCTG-TTCACTGTAAGCACAGGAATGTCAAATCTGATATCTTCG
91299926 GTCTGCTCCT
Statistics
Matches: 370, Mismatches: 61, Indels: 32
0.80 0.13 0.07
Matches are distributed among these distances:
129 2 0.01
130 13 0.04
131 79 0.21
132 252 0.68
133 20 0.05
134 4 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (131 bp):
ATCTTCGATCTGTTCACTGTAAGCACAGGAATGTCAAATCTGATATCTTCGATCCGTTCCCTATA
AGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCAATCTGA
A
Found at i:91299674 original size:176 final size:176
Alignment explanation
Indices: 91299403--91299836 Score: 753
Period size: 176 Copynumber: 2.5 Consensus size: 176
91299393 TCTTCGATCC
* * *
91299403 GTTCCTTATAAGCACAGGGATCCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
*
91299468 GTCATGCTGAAATCTTCGATCTAGTTCACTGTAAGCACAGGAATGTCAAATCTGCTATCTTCGAT
66 GCCATGCTGAAATCTTCGATCTAGTTCACTGTAAGCACAGGAATGTCAAATCTGCTATCTTCGAT
* *
91299533 CCGTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTT
131 CCGTTCCCTATAAGCACAGGGATACCAAATCTGATGTTTTCAACTT
91299579 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
* *
91299644 GCCATGCTGAAATCTTTGATCT-GCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
66 GCCATGCTGAAATCTTCGATCTAG-TTCACTGTAAGCACAGGAATGTCAAATCTGCTATCTTCGA
91299708 TCCGTTCCCTATAAGCACAGGGATACCAAATCTGATGTTTTCAACTT
130 TCCGTTCCCTATAAGCACAGGGATACCAAATCTGATGTTTTCAACTT
* *
91299755 GTTCTCTATAAGCACAGGAATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
*
91299820 GCCATGCTAAAATCTTC
66 GCCATGCTGAAATCTTC
91299837 AACTTGTTCC
Statistics
Matches: 245, Mismatches: 12, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
175 1 0.00
176 244 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (176 bp):
GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
GCCATGCTGAAATCTTCGATCTAGTTCACTGTAAGCACAGGAATGTCAAATCTGCTATCTTCGAT
CCGTTCCCTATAAGCACAGGGATACCAAATCTGATGTTTTCAACTT
Found at i:91300065 original size:68 final size:68
Alignment explanation
Indices: 91299981--91300176 Score: 297
Period size: 68 Copynumber: 2.9 Consensus size: 68
91299971 TCTTCCACTC
* * * * *
91299981 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCTCTCCAATGCCATTTCTGGAAGAAGAGGT-TT
1 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGATCCT
91300045 GCTG
66 -CTG
* *
91300049 AAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAAAGATCCT
1 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGATCCT
91300114 CTG
66 CTG
*
91300117 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGGA-AAAAGA
1 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGA
91300177 AATTTGTAAT
Statistics
Matches: 117, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
67 6 0.05
68 110 0.94
69 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (68 bp):
AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGATCCT
CTG
Found at i:91300306 original size:43 final size:43
Alignment explanation
Indices: 91300248--91301138 Score: 520
Period size: 43 Copynumber: 20.4 Consensus size: 43
91300238 CTATTTCCCA
* **
91300248 ACTGCTTAAGGGGTTAAGATCTGTAAATTCAACCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATTCGGCCTGTTACCCT
* * *
91300291 ACTGGTTAGGGGGTTAAGATTTGTAAATCTTCAGCCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAA--TTCGGCCTGTTACCCT
* * * *
91300336 ACTGCTTAGGGGTTTAAGGTTTGTAAATTCGGCTTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATTCGGCCTGTTACCCT
* ** **** *
91300379 ACTGCTTAGGGGGTTAAAGCTCAT-TATTTTTTATCTGTTTCCCT
1 ACTGCTTAGGGGGTT-AAGATC-TGTAAATTCGGCCTGTTACCCT
* *
91300423 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAA--TTCGGCCTGTTACCCT
* * * *
91300468 ACTGCTTAGGGGTTTAAG-GCTTGTAAATTCAGCTTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATC-TGTAAATTCGGCCTGTTACCCT
** * ** * ** *
91300511 ACTGCTTAGGGGGTTAAAGCCCAT-CATCTTTGATCTGTTTCCCT
1 ACTGCTTAGGGGGTT-AAGATC-TGTAAATTCGGCCTGTTACCCT
*
91300555 ACTGCTTA-GGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAA--TTCGGCCTGTTACCCT
* * *
91300599 ACTGCTTAGGGGGTTAAG-GCTTGTAAATTTGGCTTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATC-TGTAAATTCGGCCTGTTACCCT
** * ** ** *
91300642 ACTGCTTAGGGGGTTAAAGCCCAT-CATCTTCGATCTGTTTCCCT
1 ACTGCTTAGGGGGTT-AAGATC-TGTAAATTCGGCCTGTTACCCT
** ** *
91300686 ACTGCTTAGGGGGTTAAGATCT-TCATCTTCGATCTGTTTCCCT
1 ACTGCTTAGGGGGTTAAGATCTGT-AAATTCGGCCTGTTACCCT
* * * * *
91300729 ACTGCTTAAGGAGATAAGATCTG-CAATTCGGTCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATTCGGCCTGTTACCCT
* * * * * ** *
91300771 ACCGATTAGGGGTTTAAGACCCTTCGT--CTTCGATCTGTTTCCCT
1 ACTGCTTAGGGGGTTAAGA-TC-T-GTAAATTCGGCCTGTTACCCT
*
91300815 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAA--TTCGGCCTGTTACCCT
* * *
91300860 ACTGCTTAGGGGGTTAA-AGCTTGTAAATTTGGCTTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATC-TGTAAATTCGGCCTGTTACCCT
** * ** ** **
91300903 ACTGCTTAGGGGGTTAAAGCCCAT-CATCTTCGATCTGTTTTCCT
1 ACTGCTTAGGGGGTT-AAGATC-TGTAAATTCGGCCTGTTACCCT
* ** * ** *
91300947 ACTGCTTAGGGGGTTAAGATGT-TCATCTTTGATCTGTTTCCCT
1 ACTGCTTAGGGGGTTAAGATCTGT-AAATTCGGCCTGTTACCCT
* * *
91300990 ACTGCTTAGGGAGATAAGATC--TACAATTCGGTCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTA-AATTCGGCCTGTTACCCT
* * * * * ** *
91301032 ACCGATTAGGGGTTTAAGACCCTTCGT--CTTCGATCTGTTTCCCT
1 ACTGCTTAGGGGGTTAAGA-TC-T-GTAAATTCGGCCTGTTACCCT
*
91301076 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAA--TTCGGCCTGTTACCCT
* *
91301121 ATTGCTTAGGGGCTTAAG
1 ACTGCTTAGGGGGTTAAG
91301139 GCTTGTGAAT
Statistics
Matches: 658, Mismatches: 149, Indels: 80
0.74 0.17 0.09
Matches are distributed among these distances:
41 6 0.01
42 65 0.10
43 233 0.35
44 195 0.30
45 158 0.24
47 1 0.00
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (43 bp):
ACTGCTTAGGGGGTTAAGATCTGTAAATTCGGCCTGTTACCCT
Found at i:91300417 original size:132 final size:131
Alignment explanation
Indices: 91300281--91301150 Score: 1113
Period size: 132 Copynumber: 6.6 Consensus size: 131
91300271 TAAATTCAAC
* * *
91300281 CTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* * * * **
91300346 GGTTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTATTTTTT
66 GG-TTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
91300411 AT
130 AT
*
91300413 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* *
91300478 GGTTTAAGGCTTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTG
66 GG-TTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
91300543 AT
130 AT
91300545 CTGTTTCCCTACTGCTTA-GGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTA-G
*
91300609 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
65 GGGTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
91300674 AT
130 AT
* * *
91300676 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTC-GATCTGTTTCCCTACTGCTTAA
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG-CCTGTTACCCTACTGCTT-A
* * * * * * * * *
91300738 GGAGATAA-GATCTG-CAATTCGG-TCTGTTACCCTACCGATTA-GGGGTTTAAGACCCTTCGTC
64 GGGGTTAAGGCT-TGTAAATTCGGCT-TGTTACCCTACTGCTTAGGGGGTTAAAG-CCCATCATC
91300799 TTCGAT
126 TTCGAT
91300805 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTA-G
* *
91300870 GGGTTAAAGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
65 GGGTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
91300935 AT
130 AT
* ** * * *
91300937 CTGTTTTCCTACTGCTTAGGGGGTTAAGA--TGTTCATCTT-TGATCTGTTTCCCTACTGCTTAG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG-CCTGTTACCCTACTGCTTAG
* * * * * * * *
91300999 GGAGATAA-G-ATCTACAATTCGG-TCTGTTACCCTACCGATTA-GGGGTTTAAGACCCTTCGTC
65 GG-GTTAAGGCTTGTA-AATTCGGCT-TGTTACCCTACTGCTTAGGGGGTTAAAG-CCCATCATC
91301060 TTCGAT
126 TTCGAT
*
91301066 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTATTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
*
91301131 GGCTTAAGGCTTGTGAATTC
66 GG-TTAAGGCTTGTAAATTC
91301151 ACTGATTCTA
Statistics
Matches: 646, Mismatches: 66, Indels: 52
0.85 0.09 0.07
Matches are distributed among these distances:
128 23 0.04
129 136 0.21
130 62 0.10
131 184 0.28
132 229 0.35
133 12 0.02
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.36
Consensus pattern (131 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
GGTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGA
T
Found at i:91300888 original size:261 final size:261
Alignment explanation
Indices: 91300281--91301149 Score: 1309
Period size: 261 Copynumber: 3.3 Consensus size: 261
91300271 TAAATTCAAC
* * *
91300281 CTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* * * * * * **
91300346 GGTTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTATTTTTT
66 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
* * * *
91300411 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGCCAGTTACCCTACTGCTT
131 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA-TCTGTTTCCCTACTGCTT
* * * * * * * * *
91300475 -AGGGGTTTAAG-GCTTGTAAATTCAG-CTTGTTACCCTACTGCTTAGGGGGTTAA-AGCCCATC
193 AAGGAG-ATAAGATC-TG-CAATTCGGTC-TGTTACCCTACCGATTAGGGGTTTAAGA-CCCTTC
* *
91300536 ATCTTTGAT
253 GTCTTCGAT
91300545 CTGTTTCCCTACTGCTTA-GGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
91300609 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
66 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
91300674 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAAG
131 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAAG
91300739 GAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGA
196 GAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGA
91300804 T
261 T
91300805 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
*
91300870 GGGTTAAAGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
66 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
* * * *
91300935 ATCTGTTTTCCTACTGCTTAGGGGGTTAAGATGTTCATCTTTGATCTGTTTCCCTACTGCTTAGG
131 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAAG
*
91301000 GAGATAAGATCTACAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGA
196 GAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGA
91301065 T
261 T
*
91301066 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTATTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* *
91301131 GGCTTAAGGCTTGTGAATT
66 GGGTTAAGGCTTGTAAATT
91301150 CACTGATTCT
Statistics
Matches: 563, Mismatches: 36, Indels: 15
0.92 0.06 0.02
Matches are distributed among these distances:
260 59 0.10
261 345 0.61
262 7 0.01
263 136 0.24
264 16 0.03
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.36
Consensus pattern (261 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAAG
GAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGA
T
Found at i:91300951 original size:87 final size:86
Alignment explanation
Indices: 91300195--91300963 Score: 429
Period size: 87 Copynumber: 8.8 Consensus size: 86
91300185 ATTTCCAGCC
* * * * * * *
91300195 TGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGGG
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTC-ATCTGTTACCCTACTGCTTAGGGG
* *** *
91300260 GTT-AAGATCTGTAAATTCAACC
65 GTTAAAGCT-TGTAAATTTGGCT
* **** * *
91300282 TGTTACCCTACTGGTTAGGGGGTT-AAGATTTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 TGTTACCCTACTGCTTAGGGGGTTAAAG-CCCAT-CATCTTCA-TCTGTTACCCTACTGCTTAGG
* * * *
91300346 GGTTTAAGGTTTGTAAATTCGGCT
63 GGGTTAAAGCTTGTAAATTTGGCT
* * * * *
91300370 TGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTATTTTTTATCTGTTTCCCTACTGCTTAGGGG
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCA-TCTTCATCTGTTACCCTACTGCTTAGGGG
* * *
91300435 GTT-AAGATCTGTAAATCTTCAGCC
65 GTTAAAGCT-TGTAAAT-TT-GGCT
* * * *** ** *
91300459 AGTTACCCTACTGCTTAGGGGTTTAAGGCTTGT-AAATTCAGCTTGTTACCCTACTGCTTAGGGG
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCATC-TGTTACCCTACTGCTTAGGGG
*** * * *
91300523 GTTAAAGCCCAT-CATCTTTGAT
65 GTTAAAGCTTGTAAAT-TTGGCT
* * ** * *
91300545 CTGTTTCCCTACTGCTTA-GGGGTT-AAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAG
1 -TGTTACCCTACTGCTTAGGGGGTTAAAG-CCCAT-CATCTTCA-TCTGTTACCCTACTGCTTAG
*
91300608 GGGGTTAAGGCTTGTAAATTTGGCT
62 GGGGTTAAAGCTTGTAAATTTGGCT
*
91300633 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGG
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTC-ATCTGTTACCCTACTGCTTAGGGG
* * * *
91300698 GTT-AAGATCT-T-CATCTTCGAT
65 GTTAAAGCT-TGTAAAT-TTGGCT
* * * * ** * * * *
91300719 CTGTTTCCCTACTGCTTAAGGAGAT-AAGATC-TGCA-ATTCGGTCTGTTACCCTACCGATTAGG
1 -TGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CATCTTC-ATCTGTTACCCTACTGCTTAGG
* * * * *
91300781 GGTTTAAGACCCTTCGT---CTTCGAT
63 GGGTTAA-A-GCTT-GTAAATTTGGCT
* * ** * *
91300805 CTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAG
1 -TGTTACCCTACTGCTTAGGGGGTTAAAG-CCCAT-CATCTTCA-TCTGTTACCCTACTGCTTAG
91300869 GGGGTTAAAGCTTGTAAATTTGGCT
62 GGGGTTAAAGCTTGTAAATTTGGCT
**
91300894 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTTCCTACTGCTTAGGGG
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTC-ATCTGTTACCCTACTGCTTAGGGG
91300959 GTTAA
65 GTTAA
91300964 GATGTTCATC
Statistics
Matches: 522, Mismatches: 122, Indels: 76
0.73 0.17 0.11
Matches are distributed among these distances:
85 31 0.06
86 62 0.12
87 181 0.35
88 168 0.32
89 80 0.15
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.36
Consensus pattern (86 bp):
TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCATCTGTTACCCTACTGCTTAGGGGG
TTAAAGCTTGTAAATTTGGCT
Found at i:91302349 original size:6 final size:6
Alignment explanation
Indices: 91302338--91302367 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
91302328 TTGTGTTTTT
91302338 TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC
1 TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC
91302368 ATATAACTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.17, T:0.50
Consensus pattern (6 bp):
TTTGCC
Found at i:91305203 original size:19 final size:19
Alignment explanation
Indices: 91305157--91305203 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
91305147 AGTGAAAGTT
91305157 TAATGCAAATGTTGCAATG
1 TAATGCAAATGTTGCAATG
* *
91305176 TAATACAAATGTATGGAATG
1 TAATGCAAATGT-TGCAATG
91305196 -AATGCAAA
1 TAATGCAAA
91305204 AGAAAGGAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.45, C:0.09, G:0.19, T:0.28
Consensus pattern (19 bp):
TAATGCAAATGTTGCAATG
Found at i:91316045 original size:18 final size:19
Alignment explanation
Indices: 91316008--91316048 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
91315998 ATTTAGAATC
91316008 AAAACTAAAATAAATAATA
1 AAAACTAAAATAAATAATA
* *
91316027 AAAACTAGATTAAAT-ATA
1 AAAACTAAAATAAATAATA
91316045 AAAA
1 AAAA
91316049 TATCAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.22
Consensus pattern (19 bp):
AAAACTAAAATAAATAATA
Found at i:91316050 original size:31 final size:31
Alignment explanation
Indices: 91315974--91316047 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 31
91315964 TCAAGTTATC
*
91315974 TTAAATATTAAAATAAAAATAAAAATTTAGAA
1 TTAAATA-TAAAATAAAAATAAAAATCTAGAA
*
91316006 TCAAA-ACTAAAATAAATAATAAAAA-CTAG-A
1 TTAAATA-TAAAATAAA-AATAAAAATCTAGAA
91316036 TTAAATATAAAA
1 TTAAATATAAAA
91316048 ATATCAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
30 10 0.28
31 14 0.39
32 12 0.33
ACGTcount: A:0.66, C:0.04, G:0.03, T:0.27
Consensus pattern (31 bp):
TTAAATATAAAATAAAAATAAAAATCTAGAA
Found at i:91317166 original size:58 final size:58
Alignment explanation
Indices: 91317096--91317210 Score: 230
Period size: 58 Copynumber: 2.0 Consensus size: 58
91317086 TAGAACCATA
91317096 AAATTAGCTTAATTCTGCTGGGCAAAATTGCCCAAAATATTTTGTCCCTGCATATTTG
1 AAATTAGCTTAATTCTGCTGGGCAAAATTGCCCAAAATATTTTGTCCCTGCATATTTG
91317154 AAATTAGCTTAATTCTGCTGGGCAAAATTGCCCAAAATATTTTGTCCCTGCATATTT
1 AAATTAGCTTAATTCTGCTGGGCAAAATTGCCCAAAATATTTTGTCCCTGCATATTT
91317211 TAATCTGGTG
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (58 bp):
AAATTAGCTTAATTCTGCTGGGCAAAATTGCCCAAAATATTTTGTCCCTGCATATTTG
Found at i:91319910 original size:21 final size:21
Alignment explanation
Indices: 91319886--91319977 Score: 70
Period size: 21 Copynumber: 4.6 Consensus size: 21
91319876 TTGTTTTTAT
91319886 TTTTTTTATTTTTAACATATA
1 TTTTTTTATTTTTAACATATA
** * *
91319907 -TTTTTTATTTTTTTTCTTTTA
1 TTTTTTTA-TTTTTAACATATA
* *
91319928 -TTGTTTAATTTT-A-AT-T-
1 TTTTTTTATTTTTAACATATA
*
91319944 TTTTTTCATTTTTAACATATA
1 TTTTTTTATTTTTAACATATA
91319965 TTTTTTTATTTTT
1 TTTTTTTATTTTT
91319978 TTCTTTCAAA
Statistics
Matches: 53, Mismatches: 12, Indels: 12
0.69 0.16 0.16
Matches are distributed among these distances:
17 10 0.19
18 2 0.04
19 2 0.04
20 12 0.23
21 27 0.51
ACGTcount: A:0.21, C:0.04, G:0.01, T:0.74
Consensus pattern (21 bp):
TTTTTTTATTTTTAACATATA
Found at i:91319920 original size:29 final size:29
Alignment explanation
Indices: 91319879--91319979 Score: 114
Period size: 28 Copynumber: 3.4 Consensus size: 29
91319869 CAATCTTTTG
91319879 TTTTTATTTTTTTTATTTTTAACATATAT
1 TTTTTATTTTTTTTATTTTTAACATATAT
* *** * *
91319908 TTTTTATTTTTTTT-CTTTTATTGTTTAA
1 TTTTTATTTTTTTTATTTTTAACATATAT
*
91319936 TTTTAATTTTTTTTCATTTTTAACATATATT
1 TTTTTATTTTTTTT-ATTTTTAACATATA-T
91319967 TTTTTATTTTTTT
1 TTTTTATTTTTTT
91319980 CTTTCAAATT
Statistics
Matches: 55, Mismatches: 14, Indels: 4
0.75 0.19 0.05
Matches are distributed among these distances:
28 21 0.38
29 14 0.25
30 8 0.15
31 12 0.22
ACGTcount: A:0.20, C:0.04, G:0.01, T:0.75
Consensus pattern (29 bp):
TTTTTATTTTTTTTATTTTTAACATATAT
Found at i:91320087 original size:16 final size:15
Alignment explanation
Indices: 91320054--91320174 Score: 138
Period size: 16 Copynumber: 8.0 Consensus size: 15
91320044 AAACATGGAC
* *
91320054 TAAAATTTTAAATTT
1 TAAATTTTTAATTTT
91320069 TAAATTTTTAAGTTTT
1 TAAATTTTTAA-TTTT
*
91320085 TAAGTTTTTAATTTTT
1 TAAATTTTTAA-TTTT
*
91320101 TAATTTTTTAATTTT
1 TAAATTTTTAATTTT
91320116 TAAATTTTTAAATTTT
1 TAAATTTTT-AATTTT
*
91320132 TAAATTTTTAAATTT
1 TAAATTTTTAATTTT
91320147 TAAA-TTTTAATTTT
1 TAAATTTTTAATTTT
**
91320161 TTTATTTTT-ATTTT
1 TAAATTTTTAATTTT
91320175 GATTTAATGT
Statistics
Matches: 93, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
14 16 0.17
15 35 0.38
16 42 0.45
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (15 bp):
TAAATTTTTAATTTT
Found at i:91320161 original size:7 final size:7
Alignment explanation
Indices: 91320057--91320174 Score: 112
Period size: 8 Copynumber: 15.9 Consensus size: 7
91320047 CATGGACTAA
*
91320057 AATTTTA
1 AATTTTT
*
91320064 AATTTTA
1 AATTTTT
91320071 AATTTTT
1 AATTTTT
91320078 AAGTTTTT
1 AA-TTTTT
91320086 AAGTTTTT
1 AA-TTTTT
91320094 AATTTTTT
1 AA-TTTTT
91320102 AATTTTTT
1 AA-TTTTT
91320110 AATTTTT
1 AATTTTT
91320117 AAATTTTT
1 -AATTTTT
91320125 AAATTTTT
1 -AATTTTT
91320133 AAATTTTT
1 -AATTTTT
*
91320141 AAATTTT
1 AATTTTT
*
91320148 AAATTTT
1 AATTTTT
91320155 AATTTTTT
1 AA-TTTTT
*
91320163 TATTTTT
1 AATTTTT
91320170 -ATTTT
1 AATTTT
91320175 GATTTAATGT
Statistics
Matches: 103, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
6 5 0.05
7 40 0.39
8 58 0.56
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (7 bp):
AATTTTT
Found at i:91320162 original size:8 final size:8
Alignment explanation
Indices: 91320054--91320154 Score: 136
Period size: 8 Copynumber: 13.0 Consensus size: 8
91320044 AAACATGGAC
*
91320054 TAAAATTT
1 TAAATTTT
91320062 TAAA-TTT
1 TAAATTTT
91320069 TAAATTTT
1 TAAATTTT
*
91320077 TAAGTTTT
1 TAAATTTT
*
91320085 TAAGTTTT
1 TAAATTTT
91320093 T-AATTTT
1 TAAATTTT
*
91320100 TTAATTTT
1 TAAATTTT
*
91320108 TTAATTTT
1 TAAATTTT
91320116 TAAATTTT
1 TAAATTTT
91320124 TAAATTTT
1 TAAATTTT
91320132 TAAATTTT
1 TAAATTTT
91320140 TAAA-TTT
1 TAAATTTT
91320147 TAAATTTT
1 TAAATTTT
91320155 AATTTTTTTA
Statistics
Matches: 87, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
7 20 0.23
8 67 0.77
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (8 bp):
TAAATTTT
Found at i:91320776 original size:15 final size:15
Alignment explanation
Indices: 91320753--91320803 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
91320743 ATACCCATGG
*
91320753 CCATTAAACCTTAAA
1 CCATAAAACCTTAAA
*
91320768 CCATAAAACCCTAAA
1 CCATAAAACCTTAAA
* *
91320783 TCAT-AGACCTTAAA
1 CCATAAAACCTTAAA
*
91320797 CCTTAAA
1 CCATAAA
91320804 CCCAAAAATA
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.47, C:0.27, G:0.02, T:0.24
Consensus pattern (15 bp):
CCATAAAACCTTAAA
Found at i:91321145 original size:40 final size:41
Alignment explanation
Indices: 91321036--91321212 Score: 205
Period size: 41 Copynumber: 4.4 Consensus size: 41
91321026 GTTATATAAC
* *** * * *
91321036 TTTTAGCGGCATTTTATTGAAAGCGCCGCTATTACTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGGT
*
91321077 TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTAGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGGT
*
91321118 TTTTAGCGGCG-TTTACCAAAAGTGCCACTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGGT
* * * * *
91321158 TTTTAGTGGCGTTTTACCAAAAGCGTCGCTATTGCT-TTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGGT
*
91321198 TTTTAGCGGTGTTTT
1 TTTTAGCGGCGTTTT
91321213 TGGTAAAACG
Statistics
Matches: 117, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
40 53 0.45
41 64 0.55
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGGT
Found at i:91321243 original size:81 final size:81
Alignment explanation
Indices: 91321055--91321211 Score: 217
Period size: 81 Copynumber: 2.0 Consensus size: 81
91321045 CATTTTATTG
*
91321055 AAAGCGCCGCTATTACTCTGGTTTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTAGTTT
1 AAAGCGCCGCTATTGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTAGTTT
91321120 TTAGCGGCGTTTACCA
66 TTAGCGGCGTTTACCA
* * * * * * * *
91321136 AAAGTGCCACTAATGCTCTGGTTTTTAGTGGCGTTTTACCAAAAGCGTCGCTATTGCT-TTGTTT
1 AAAGCGCCGCTATTGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTAGTTT
*
91321200 TTAGCGGTGTTT
66 TTAGCGGCGTTT
91321212 TTGGTAAAAC
Statistics
Matches: 66, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
80 16 0.24
81 50 0.76
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.36
Consensus pattern (81 bp):
AAAGCGCCGCTATTGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTAGTTT
TTAGCGGCGTTTACCA
Found at i:91326575 original size:26 final size:26
Alignment explanation
Indices: 91326532--91326674 Score: 205
Period size: 26 Copynumber: 5.5 Consensus size: 26
91326522 CCATAATGAT
*
91326532 AATGTTTCATGATAATGGATTAGGTA
1 AATGTTCCATGATAATGGATTAGGTA
** * *
91326558 AAAATTCCATGCTAATGGGTTAGGTA
1 AATGTTCCATGATAATGGATTAGGTA
91326584 AATGTTCCATGATAATGGATTAGGTA
1 AATGTTCCATGATAATGGATTAGGTA
* * *
91326610 AATATTCCATGATAATGGGTTATGTA
1 AATGTTCCATGATAATGGATTAGGTA
*
91326636 AATGTTCCATGATAATGGTTTAGGTA
1 AATGTTCCATGATAATGGATTAGGTA
91326662 AATGTTCCATGAT
1 AATGTTCCATGAT
91326675 GGGTATTTCA
Statistics
Matches: 102, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 102 1.00
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (26 bp):
AATGTTCCATGATAATGGATTAGGTA
Found at i:91326610 original size:52 final size:52
Alignment explanation
Indices: 91326532--91326674 Score: 232
Period size: 52 Copynumber: 2.8 Consensus size: 52
91326522 CCATAATGAT
* * *
91326532 AATGTTTCATGATAATGGATTAGGTAAAAATTCCATGCTAATGGGTTAGGTA
1 AATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAATGGGTTAGGTA
*
91326584 AATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAATGGGTTATGTA
1 AATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAATGGGTTAGGTA
* *
91326636 AATGTTCCATGATAATGGTTTAGGTAAATGTTCCATGAT
1 AATGTTCCATGATAATGGATTAGGTAAATATTCCATGAT
91326675 GGGTATTTCA
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 85 1.00
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (52 bp):
AATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAATGGGTTAGGTA
Found at i:91330394 original size:7 final size:7
Alignment explanation
Indices: 91330382--91330502 Score: 53
Period size: 7 Copynumber: 17.3 Consensus size: 7
91330372 ATCTATTTAT
91330382 CCCTAAA
1 CCCTAAA
91330389 CCCTAAA
1 CCCTAAA
91330396 CCCTAAA
1 CCCTAAA
**
91330403 CTATAAA
1 CCCTAAA
** *
91330410 TACAAAA
1 CCCTAAA
**
91330417 CTTTAAA
1 CCCTAAA
*
91330424 CCTTAAA
1 CCCTAAA
91330431 CCCTAAA
1 CCCTAAA
** *
91330438 CTATATA
1 CCCTAAA
*
91330445 CACTAAA
1 CCCTAAA
91330452 CCCTAAA
1 CCCTAAA
**
91330459 CTATAAA
1 CCCTAAA
* * *
91330466 CCATCAT
1 CCCTAAA
***
91330473 TTATAAA
1 CCCTAAA
*
91330480 CCTTAAA
1 CCCTAAA
91330487 CCCTAAA
1 CCCTAAA
91330494 CCCTAAA
1 CCCTAAA
91330501 CC
1 CC
91330503 TTGAACCTTG
Statistics
Matches: 82, Mismatches: 32, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
7 82 1.00
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (7 bp):
CCCTAAA
Found at i:91330438 original size:21 final size:20
Alignment explanation
Indices: 91330414--91330467 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 20
91330404 TATAAATACA
*
91330414 AAACTTTAAACCTTAAACCCT
1 AAACTATAAACC-TAAACCCT
*
91330435 AAACTATATACACTAAACCCT
1 AAACTATAAAC-CTAAACCCT
91330456 AAACTATAAACC
1 AAACTATAAACC
91330468 ATCATTTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 1 0.03
21 27 0.93
22 1 0.03
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (20 bp):
AAACTATAAACCTAAACCCT
Found at i:91330459 original size:35 final size:35
Alignment explanation
Indices: 91330382--91330502 Score: 118
Period size: 35 Copynumber: 3.5 Consensus size: 35
91330372 ATCTATTTAT
* *
91330382 CCCTAAACCCTAAACCCTAAACTATAAATACAAAA
1 CCCTAAACCCTAAACCCTAAACTATAAACACTAAA
** * *
91330417 CTTTAAACCTTAAACCCTAAACTATATACACTAAA
1 CCCTAAACCCTAAACCCTAAACTATAAACACTAAA
** * * **
91330452 CCCTAAACTATAAACCATCATTTATAAAC-CTTAAA
1 CCCTAAACCCTAAACCCTAAACTATAAACAC-TAAA
91330487 CCCTAAACCCTAAACC
1 CCCTAAACCCTAAACC
91330503 TTGAACCTTG
Statistics
Matches: 68, Mismatches: 17, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
34 1 0.01
35 67 0.99
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (35 bp):
CCCTAAACCCTAAACCCTAAACTATAAACACTAAA
Found at i:91330493 original size:28 final size:28
Alignment explanation
Indices: 91330420--91330495 Score: 82
Period size: 28 Copynumber: 2.7 Consensus size: 28
91330410 TACAAAACTT
*
91330420 TAAACCTTAAACCCTAAACTATATACAC
1 TAAACCTTAAACCCTAAACCATATACAC
* ** **
91330448 TAAACCCTAAACTATAAACCATCATTTA-
1 TAAACCTTAAACCCTAAACCAT-ATACAC
91330476 TAAACCTTAAACCCTAAACC
1 TAAACCTTAAACCCTAAACC
91330496 CTAAACCTTG
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
28 35 0.92
29 3 0.08
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.25
Consensus pattern (28 bp):
TAAACCTTAAACCCTAAACCATATACAC
Found at i:91330509 original size:7 final size:7
Alignment explanation
Indices: 91330499--91330523 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
91330489 CTAAACCCTA
91330499 AACCTTG
1 AACCTTG
91330506 AACCTTG
1 AACCTTG
91330513 AACCTTG
1 AACCTTG
91330520 AACC
1 AACC
91330524 ATAAAACCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.32, G:0.12, T:0.24
Consensus pattern (7 bp):
AACCTTG
Found at i:91330509 original size:14 final size:14
Alignment explanation
Indices: 91330478--91330528 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
91330468 ATCATTTATA
* *
91330478 AACCTTAAACCCTA
1 AACCTTAAACCTTG
*
91330492 AACCCTAAACCTTG
1 AACCTTAAACCTTG
*
91330506 AACCTTGAACCTTG
1 AACCTTAAACCTTG
*
91330520 AACCATAAA
1 AACCTTAAA
91330529 ACCCTAACTT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.41, C:0.31, G:0.06, T:0.22
Consensus pattern (14 bp):
AACCTTAAACCTTG
Found at i:91330516 original size:21 final size:21
Alignment explanation
Indices: 91330382--91330509 Score: 69
Period size: 21 Copynumber: 6.1 Consensus size: 21
91330372 ATCTATTTAT
*
91330382 CCCTAAACCCTAAACCCTAAA
1 CCCTAAACCCTAAACCTTAAA
** ** * *
91330403 CTATAAATACAAAACTTTAAA
1 CCCTAAACCCTAAACCTTAAA
* ** *
91330424 CCTTAAACCCTAAACTATATA
1 CCCTAAACCCTAAACCTTAAA
*
91330445 CACTAAACCCTAAA-CTATAAA
1 CCCTAAACCCTAAACCT-TAAA
* * ****
91330466 CCATCATTTATAAACCTTAAA
1 CCCTAAACCCTAAACCTTAAA
*
91330487 CCCTAAACCCTAAACCTTGAA
1 CCCTAAACCCTAAACCTTAAA
91330508 CC
1 CC
91330510 TTGAACCTTG
Statistics
Matches: 72, Mismatches: 33, Indels: 4
0.66 0.30 0.04
Matches are distributed among these distances:
21 70 0.97
22 2 0.03
ACGTcount: A:0.45, C:0.30, G:0.01, T:0.23
Consensus pattern (21 bp):
CCCTAAACCCTAAACCTTAAA
Found at i:91332026 original size:13 final size:14
Alignment explanation
Indices: 91332010--91332038 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
91332000 TTCTAAATAT
91332010 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
91332023 TTATAATGGTTTAA
1 TTATAATGGTTTAA
91332037 TT
1 TT
91332039 CATCGTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:91332504 original size:21 final size:21
Alignment explanation
Indices: 91332480--91332519 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
91332470 GGGCGGAAGC
91332480 AGCAACGAGGGAAGCAGAGGT
1 AGCAACGAGGGAAGCAGAGGT
** *
91332501 AGCAGTGAGGGAAGTAGAG
1 AGCAACGAGGGAAGCAGAG
91332520 CAAAGCAGAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.10, G:0.45, T:0.07
Consensus pattern (21 bp):
AGCAACGAGGGAAGCAGAGGT
Found at i:91335365 original size:26 final size:26
Alignment explanation
Indices: 91335306--91335359 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
91335296 AATAAAAGTT
*
91335306 ATAAAAAATATTAAATTTTAATAAAA
1 ATAAGAAATATTAAATTTTAATAAAA
*
91335332 ATAAGAAATATTTAA-TTTAATTAAAA
1 ATAAGAAATATTAAATTTTAA-TAAAA
91335358 AT
1 AT
91335360 TGGAAAAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (26 bp):
ATAAGAAATATTAAATTTTAATAAAA
Found at i:91335378 original size:20 final size:20
Alignment explanation
Indices: 91335353--91335397 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
91335343 TTAATTTAAT
* *
91335353 TAAAAATTGGAAAAAGACTA
1 TAAAAATTGGAAAAAAAATA
*
91335373 TAAAAATTGTAAAAAAAATA
1 TAAAAATTGGAAAAAAAATA
91335393 TAAAA
1 TAAAA
91335398 TATATAGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.67, C:0.02, G:0.09, T:0.22
Consensus pattern (20 bp):
TAAAAATTGGAAAAAAAATA
Found at i:91335680 original size:10 final size:9
Alignment explanation
Indices: 91335665--91335795 Score: 57
Period size: 10 Copynumber: 13.6 Consensus size: 9
91335655 TTTTTATGCA
91335665 TTTTATAAT
1 TTTTATAAT
*
91335674 TTCTTATGAT
1 TT-TTATAAT
*
91335684 TTTTATAAAA
1 TTTTAT-AAT
*
91335694 TTTTACAAATT
1 TTTTA-TAA-T
*
91335705 TTTTATATT
1 TTTTATAAT
91335714 TTTTACT-AT
1 TTTTA-TAAT
*
91335723 TTATATATAT
1 TTTTATA-AT
* *
91335733 ATTTCTAATT
1 TTTTATAA-T
* *
91335743 TTTTGTAAA
1 TTTTATAAT
*
91335752 TTTTAAATAT
1 TTTTATA-AT
91335762 TTTTATAAT
1 TTTTATAAT
*
91335771 TTTTATTAAAG
1 TTTTA-T-AAT
*
91335782 TTTAATAAT
1 TTTTATAAT
91335791 TTTTA
1 TTTTA
91335796 AAACGTTTAT
Statistics
Matches: 88, Mismatches: 23, Indels: 22
0.66 0.17 0.17
Matches are distributed among these distances:
8 1 0.01
9 36 0.41
10 40 0.45
11 11 0.12
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (9 bp):
TTTTATAAT
Found at i:91335780 original size:29 final size:29
Alignment explanation
Indices: 91335664--91335795 Score: 87
Period size: 29 Copynumber: 4.6 Consensus size: 29
91335654 TTTTTTATGC
* * *
91335664 ATTTTATAAT-TTCTTATGATTTTTATAAA
1 ATTTTA-AATATTTTTATAATTTTTATTAA
* *
91335693 ATTTTACAA-ATTTTTTATATTTTTTACT--
1 ATTTTA-AATA-TTTTTATAATTTTTATTAA
* * *
91335721 ATTTATATATATATTTCTAATTTTT-TGTAA
1 ATTT-TAAATATTTTTATAATTTTTAT-TAA
91335751 ATTTTAAATATTTTTATAATTTTTATTAA
1 ATTTTAAATATTTTTATAATTTTTATTAA
*
91335780 AGTTT-AATAATTTTTA
1 ATTTTAAAT-ATTTTTA
91335796 AAACGTTTAT
Statistics
Matches: 79, Mismatches: 15, Indels: 18
0.71 0.13 0.16
Matches are distributed among these distances:
28 20 0.25
29 42 0.53
30 17 0.22
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (29 bp):
ATTTTAAATATTTTTATAATTTTTATTAA
Found at i:91335803 original size:19 final size:19
Alignment explanation
Indices: 91335766--91335814 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
91335756 AAATATTTTT
91335766 ATAATTTTTATTAAAGTTTA
1 ATAATTTTTA-TAAAGTTTA
91335786 ATAATTTTTA-AAACGTTTA
1 ATAATTTTTATAAA-GTTTA
* *
91335805 TTGATTTTTA
1 ATAATTTTTA
91335815 CTTTTTTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 3 0.12
19 13 0.50
20 10 0.38
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.55
Consensus pattern (19 bp):
ATAATTTTTATAAAGTTTA
Found at i:91337897 original size:39 final size:39
Alignment explanation
Indices: 91337853--91337941 Score: 178
Period size: 39 Copynumber: 2.3 Consensus size: 39
91337843 TCATAATATA
91337853 AGAAGAGACATATGTTTAAACTTTAATGACGATATTATT
1 AGAAGAGACATATGTTTAAACTTTAATGACGATATTATT
91337892 AGAAGAGACATATGTTTAAACTTTAATGACGATATTATT
1 AGAAGAGACATATGTTTAAACTTTAATGACGATATTATT
91337931 AGAAGAGACAT
1 AGAAGAGACAT
91337942 CCATAAATCT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.43, C:0.08, G:0.17, T:0.33
Consensus pattern (39 bp):
AGAAGAGACATATGTTTAAACTTTAATGACGATATTATT
Found at i:91339538 original size:16 final size:16
Alignment explanation
Indices: 91339502--91339540 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
91339492 GTTTGGTTCA
*
91339502 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
* *
91339518 TTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
91339534 CTGTAAT
1 CTGTAAT
91339541 CAATAATTCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.33
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:91339701 original size:26 final size:25
Alignment explanation
Indices: 91339652--91339702 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
91339642 ATGATTATTG
*
91339652 TTATTGTTATTAAATTTTAATAAAA
1 TTATTGTTAATAAATTTTAATAAAA
* *
91339677 TTATTGTTAAATATATTTTATTAAAA
1 TTATTGTT-AATAAATTTTAATAAAA
91339703 ATAATAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (25 bp):
TTATTGTTAATAAATTTTAATAAAA
Found at i:91339737 original size:58 final size:57
Alignment explanation
Indices: 91339665--91339803 Score: 167
Period size: 57 Copynumber: 2.4 Consensus size: 57
91339655 TTGTTATTAA
* * * *
91339665 ATTTTAATAAAATTATTGTTAAATATATTTTATTAAAAATAATAA-ATAATT-TAACCAT
1 ATTTTAATATAATTATTATTAAATATAGTTTAAT-AAAATAA-AATATAATTATAA-CAT
*
91339723 ATTTTAACATAATTATTATTAAATATAGTTTAATAAAATAAAATATAATTAATAACAT
1 ATTTTAATATAATTATTATTAAATATAGTTTAATAAAATAAAATATAATT-ATAACAT
*
91339781 -TCTTAATATAATTATTATTAAAT
1 ATTTTAATATAATTATTATTAAAT
91339804 GAATTAAAAA
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
56 2 0.03
57 34 0.48
58 32 0.45
59 3 0.04
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.45
Consensus pattern (57 bp):
ATTTTAATATAATTATTATTAAATATAGTTTAATAAAATAAAATATAATTATAACAT
Found at i:91345769 original size:62 final size:62
Alignment explanation
Indices: 91345703--91345886 Score: 323
Period size: 62 Copynumber: 3.0 Consensus size: 62
91345693 CACGTATCTC
*
91345703 TTCATTCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
*
91345765 TTCATGCATTAACATTACATTTTATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
* * *
91345827 TTCATGCATCAACATTACATTTCATTGCATACAATAAATTTCCTAAAATCCAAAAGTACG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACG
91345887 TCGAGTTTAG
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 116 1.00
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.33
Consensus pattern (62 bp):
TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
Found at i:91347137 original size:12 final size:12
Alignment explanation
Indices: 91347119--91347163 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
91347109 GTGGAGGCAA
91347119 AAAAAAAAGAGAC
1 AAAAAAAA-AGAC
91347132 AAAAAAAAAGAC
1 AAAAAAAAAGAC
91347144 -AAAAAAAAGTA-
1 AAAAAAAAAG-AC
91347155 AAAAAAAAA
1 AAAAAAAAA
91347164 AACGAGAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
11 9 0.30
12 13 0.43
13 8 0.27
ACGTcount: A:0.84, C:0.04, G:0.09, T:0.02
Consensus pattern (12 bp):
AAAAAAAAAGAC
Found at i:91347137 original size:14 final size:14
Alignment explanation
Indices: 91347118--91347180 Score: 55
Period size: 14 Copynumber: 4.6 Consensus size: 14
91347108 AGTGGAGGCA
91347118 AAAAAAAAAGAGAC
1 AAAAAAAAAGAGAC
91347132 -AAAAAAAA-AGAC
1 AAAAAAAAAGAGAC
*
91347144 -AAAAAAAAGTA-AA
1 AAAAAAAAAG-AGAC
91347157 AAAAAAAAACGAGA-
1 AAAAAAAAA-GAGAC
91347171 AAATAAAAAA
1 AAA-AAAAAA
91347181 AACCAAATAA
Statistics
Matches: 42, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
12 12 0.29
13 9 0.21
14 13 0.31
15 8 0.19
ACGTcount: A:0.83, C:0.05, G:0.10, T:0.03
Consensus pattern (14 bp):
AAAAAAAAAGAGAC
Found at i:91347157 original size:10 final size:11
Alignment explanation
Indices: 91347120--91347162 Score: 52
Period size: 11 Copynumber: 3.7 Consensus size: 11
91347110 TGGAGGCAAA
91347120 AAAAAAAGAGAC
1 AAAAAAA-AGAC
91347132 AAAAAAAAAGAC
1 -AAAAAAAAGAC
91347144 AAAAAAAAGTA-
1 AAAAAAAAG-AC
91347155 AAAAAAAA
1 AAAAAAAA
91347163 AAACGAGAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
11 17 0.59
12 5 0.17
13 7 0.24
ACGTcount: A:0.84, C:0.05, G:0.09, T:0.02
Consensus pattern (11 bp):
AAAAAAAAGAC
Found at i:91347173 original size:23 final size:21
Alignment explanation
Indices: 91347132--91347182 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 21
91347122 AAAAAGAGAC
*
91347132 AAAAAAAAAGACAAAAAAAAGTA
1 AAAAAAAAAAAC-AAAAAAA-TA
* *
91347155 AAAAAAAAAAACGAGAAAATA
1 AAAAAAAAAAACAAAAAAATA
91347176 AAAAAAA
1 AAAAAAA
91347183 CCAAATAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 9 0.36
22 5 0.20
23 11 0.44
ACGTcount: A:0.84, C:0.04, G:0.08, T:0.04
Consensus pattern (21 bp):
AAAAAAAAAAACAAAAAAATA
Found at i:91347179 original size:40 final size:39
Alignment explanation
Indices: 91347117--91347198 Score: 105
Period size: 40 Copynumber: 2.1 Consensus size: 39
91347107 CAGTGGAGGC
*
91347117 AAAAAAAAAAGAGACAAAAAAAAAGA-CAAAAAAAAGTAA
1 AAAAAAAAAAGAGACAAAAAAAAAAACCAAAAAAAAG-AA
*
91347156 AAAAAAAAAACGAGA-AAATAAAAAAAACCAAATAAAAGAA
1 AAAAAAAAAA-GAGACAAA-AAAAAAAACCAAAAAAAAGAA
91347196 AAA
1 AAA
91347199 CCTCTACTTG
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
39 13 0.34
40 16 0.42
41 9 0.24
ACGTcount: A:0.82, C:0.06, G:0.09, T:0.04
Consensus pattern (39 bp):
AAAAAAAAAAGAGACAAAAAAAAAAACCAAAAAAAAGAA
Found at i:91347634 original size:20 final size:20
Alignment explanation
Indices: 91347609--91347668 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
91347599 ACTTCACTTA
*
91347609 AAAAAATGAAAAGAAAAATG
1 AAAAAATGAAAAGAAAAAAG
91347629 AAAAAATGAAAA-AAGAAAAG
1 AAAAAATGAAAAGAA-AAAAG
91347649 AAAAAA-GAAAAAGAAAAAAG
1 AAAAAATG-AAAAGAAAAAAG
91347669 GAGAGGCCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
19 3 0.08
20 31 0.86
21 2 0.06
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.05
Consensus pattern (20 bp):
AAAAAATGAAAAGAAAAAAG
Found at i:91347667 original size:7 final size:7
Alignment explanation
Indices: 91347617--91347668 Score: 65
Period size: 7 Copynumber: 7.7 Consensus size: 7
91347607 TAAAAAAATG
91347617 AAAAGAA
1 AAAAGAA
*
91347624 AAATGAA
1 AAAAGAA
91347631 AAAATGAA
1 AAAA-GAA
91347639 AAAAG--
1 AAAAGAA
91347644 AAAAGAA
1 AAAAGAA
91347651 AAAAG-A
1 AAAAGAA
91347657 AAAAGAA
1 AAAAGAA
91347664 AAAAG
1 AAAAG
91347669 GAGAGGCCAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
5 5 0.13
6 6 0.15
7 21 0.54
8 7 0.18
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (7 bp):
AAAAGAA
Found at i:91347668 original size:13 final size:13
Alignment explanation
Indices: 91347617--91347668 Score: 70
Period size: 13 Copynumber: 3.9 Consensus size: 13
91347607 TAAAAAAATG
*
91347617 AAAAGAAAAATGAA
1 AAAAGAAAAAAG-A
91347631 AAAATGAAAAAAG-
1 AAAA-GAAAAAAGA
91347644 AAAAGAAAAAAGA
1 AAAAGAAAAAAGA
91347657 AAAAGAAAAAAG
1 AAAAGAAAAAAG
91347669 GAGAGGCCAA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
12 8 0.23
13 16 0.46
14 4 0.11
15 7 0.20
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (13 bp):
AAAAGAAAAAAGA
Found at i:91348837 original size:44 final size:44
Alignment explanation
Indices: 91348669--91350329 Score: 608
Period size: 44 Copynumber: 37.8 Consensus size: 44
91348659 TGAAGTCATT
* * * *
91348669 AAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAG
1 AAAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAG
* ** * ** *
91348713 ATAA-CAGGTCCGGTTTTCCTATATTGGTAGGAAGGGGATCGACG
1 A-AAGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAG
* * * *
91348757 -ATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAG
1 AAAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAG
* * * * *
91348801 AAAGCAGACCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAG
1 AAAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAG
* * * * *
91348845 ATAGTAGGTCTTGTCTTCCTATATTGGTAGGAAGTGGATCGACG
1 AAAGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAG
* *
91348889 -ATGCAGATCTTATCTTCCTATATTGGTAGGAAGTAGATCGAAG
1 AAAGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAG
* * * *
91348932 AAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAG
1 AAAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAG
* * *
91348976 ATAA-CAGGTCTTGTCTTCCTATATTGGTAGGAAGTGGATCGACG
1 A-AAGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAG
*
91349020 -ATGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAG
1 AAAGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAG
* * *
91349063 AAAGCAGATCTTGTCTTCATATATTGG-CGTGAAGTAGATCAAAG
1 AAAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAG
* ** * * *
91349107 ATAA-CAGGTCCGGTCTTCCTATATTGGTAGGAAGTGGATTGACG
1 A-AAGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAG
* * * *
91349151 -ATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAG
1 AAAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAG
* * * *
91349195 AAAGCAGATCTTATCTTCATGTATTGG-CGTGAAGTAGATCGAAG
1 AAAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAG
** * * * * *
91349239 ATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAG
1 AAAGCAGATCTTGTCTTCCTATA-TTGGTAG-GAAGTAGATCGAAG
** * ** * * ** * *
91349285 ATGGCAGATTTTACCTCCCTGACCA-CAGT-GG-AGTACATTGAAG
1 AAAGCAGATCTTGTCTTCCT-A-TATTGGTAGGAAGTAGATCGAAG
** * * * * * * *
91349328 -CCG-ATAACTCTATCTCCCTGTATTTGGCAGTGGAA-TAGATTGAAG
1 AAAGCAGATCT-TGTCTTCCTATA-TTGGTA--GGAAGTAGATCGAAG
** * * * * * *
91349373 ATTGCAGATCTTGCCTTCTTGTATTTGGCAGCGAAGCAGATCAAAG
1 AAAGCAGATCTTGTCTTCCTATA-TTGGTAG-GAAGTAGATCGAAG
** * ** * * ** * *
91349419 ATGGCAGATTTTACCTCCCTGACCA-CAGT-GG-AGTACATTGAAG
1 AAAGCAGATCTTGTCTTCCT-A-TATTGGTAGGAAGTAGATCGAAG
** * * * * * * *
91349462 -CCG-ATAACTCTATCTCCCTGTATTTGGCAGTGGAA-TAGATTGAAG
1 AAAGCAGATCT-TGTCTTCCTATA-TTGGTA--GGAAGTAGATCGAAG
** * * * * * * *
91349507 ATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAGGTTGAAG
1 AAAGCAGATCTTGTCTTCCTATA-TTGGTAG-GAAGTAGATCGAAG
** * * ** * ** * *
91349553 ACGGCGGATTTTACCTCCCTGAT-TACAGT-GG-AGTACAT---TG
1 AAAGCAGATCTTGTCTTCCT-ATAT-TGGTAGGAAGTAGATCGAAG
* ** ***** * *
91349593 -AAGCTGATAGT-TCTAT-CTCCCGGGGCAAGAAGTAGATCGAAG
1 AAAGCAGATCTTGTCT-TCCTATATTGGTAGGAAGTAGATCGAAG
* * * * * *
91349635 ATAGCTGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAG
1 AAAGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAG
** * * * *
91349679 ATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAG
1 AAAGCAGATCTTGTCTTCCTATA-TTGGTAG-GAAGTAGATCGAAG
** * ** * ** *
91349725 ATGGCAGATTTTACCTCCCTGACTA-CAGT-GG-AGTAGATTGAAG
1 AAAGCAGATCTTGTCTTCCT-A-TATTGGTAGGAAGTAGATCGAAG
** * * * * * * *
91349768 -CCG-ATAACTCTATCTCCCTGTATTTGGCAGTGGAA-TAGATTGAAG
1 AAAGCAGATCT-TGTCTTCCTATA-TTGGTA--GGAAGTAGATCGAAG
** * * *
91349813 ATTGCAGATCTTGTCTTCC-ACATTGGTGGCGAAGTAGATCGCAG
1 AAAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAG
* * *
91349857 AAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAG
1 AAAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAG
* * ** * *
91349901 ATAGCAGGTCCGGTCTTCCTATATTGGTAGGAAGTGGATCGACG
1 AAAGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAG
* * * *
91349945 -ATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAG
1 AAAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAG
* * *
91349989 AAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAG
1 AAAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAG
* * * * * * *
91350033 ATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAG
1 AAAGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAG
* * * *
91350077 ATA-CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAG
1 AAAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAG
* * *
91350121 AAAGCAGATCTTGTATTCGTATATTGG-CGTGAAGTAGATCGAAG
1 AAAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAG
* * * * * * *
91350165 ATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAG
1 AAAGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAG
* * * *
91350209 ATA-CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAG
1 AAAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAG
* *
91350253 AAAGCAGATCTTGTATTCGTATATTGGT-GTGAAGTAGATCGAAG
1 AAAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAG
* * *
91350297 ATAGCAGATCCTGCCTTCCTATATTGGTAGGAA
1 AAAGCAGATCTTGTCTTCCTATATTGGTAGGAA
91350330 ATGGATTGAA
Statistics
Matches: 1183, Mismatches: 350, Indels: 168
0.70 0.21 0.10
Matches are distributed among these distances:
37 1 0.00
38 5 0.00
39 12 0.01
40 5 0.00
41 9 0.01
42 35 0.03
43 217 0.18
44 559 0.47
45 176 0.15
46 147 0.12
47 13 0.01
48 4 0.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (44 bp):
AAAGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAG
Found at i:91348906 original size:132 final size:131
Alignment explanation
Indices: 91348669--91350335 Score: 1264
Period size: 132 Copynumber: 12.6 Consensus size: 131
91348659 TGAAGTCATT
* * * *
91348669 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCGGTTTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTA
* * *
91348734 TATTGGTAGGAAGGGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG-GAAGTAGATCGA
91348799 AG
130 AG
* * * *
91348801 AAAGCAGACCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTA
* * * *
91348866 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTATCTTCCTATATTGGTAGGAAGTAGATCGAA
66 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGGAAGTAGATCGAA
91348931 G
131 G
* * *
91348932 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCTTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTA
* * *
91348997 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAA
66 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGGAAGTAGATCGAA
91349062 G
131 G
* * * *
91349063 AAAGCAGATCTTGTCTTCATATATTGGCGTGAAGTAGATCAAAGATAACAGGTCCGGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTA
* * *
91349128 TATTGGTAGGAAGTGGATTGACGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
66 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG-GAAGTAGATCGA
91349193 AG
130 AG
* * * * * *
91349195 AAAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATTGCAGATCTTGCCTTCCTG
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTA
* ** * * ***
91349260 TATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT-TT-TACCTCCC-TGACCACAGT-GG-AGTA
66 TA-TTGGTAG-GAAGTGGATCGAAGAT-GCAGATCTTGT-CTTCCCAT-A--TTGGTGGGAAGTA
* *
91349320 CATTGAAG
124 GATCGAAG
** * * * * * * * * * *
91349328 -CCG-ATAACTCTATCTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCCTT
1 AAAGCAGATCT-TGTCTTCATGTA-TTGGC-GT-GAAGTAGATCGAAGATAGCAGGTCCTGTCTT
* * * ** * * ***
91349390 CTTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT-TT-TACCTCCC-TGACCACAGT-GG-
62 CCTATA-TTGGTAG-GAAGTGGATCGAAGAT-GCAGATCTTGT-CTTCCCAT-A--TTGGTGGGA
* *
91349450 AGTACATTGAAG
120 AGTAGATCGAAG
** * * * * * * * * * *
91349462 -CCG-ATAACTCTATCTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCCTT
1 AAAGCAGATCT-TGTCTTCATGTA-TTGGC-GT-GAAGTAGATCGAAGATAGCAGGTCCTGTCTT
* * * * * * * * *
91349524 CCTGTATTTGGCAGCAAAGCAGG-TTGAAGACGGCGGAT-TT-TACCTCCC-TGATTACAGT-GG
62 CCTATA-TTGGTAG-GAAG-TGGATCGAAGA-TGCAGATCTTGT-CTTCCCAT-ATT--GGTGGG
* *
91349584 -AGTACAT---TG
119 AAGTAGATCGAAG
* ** ***** ** * * *
91349593 -AAGCTGATAGT-TCTATC-TCCCGGGGCAAGAAGTAGATCGAAGATAGCTGATCCTATCTTCCT
1 AAAGCAGATCTTGTCT-TCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCT
* * ** * * *
91349655 ATATTGGTAGGAAATGGATCGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGAT
65 ATATTGGTAGGAAGTGGATCGAAGA-TGCAGATCTTGTCTTCCCATA-TTGG-TGGGAAGTAGAT
91349720 CGAAG
127 CGAAG
** * ** * * * * * * * * *
91349725 ATGGCAGATTTTACCTCCCTG-ACT-ACAGTGGAGTAGATTGAAGCCGATA--A-CT-CTATCTC
1 AAAGCAGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATCGAA---GATAGCAGGTCCTGTCTT
* * * * *
91349784 CCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGTCTT-CCACATTGGTGGCGAAG
62 CCTATA-TTGGTA--GGAAGTGGATCGAAGA-TGCAGATCTTGTCTTCCCATATTGGTGG-GAAG
*
91349847 TAGATCGCAG
122 TAGATCGAAG
*
91349857 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCGGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTA
* *
91349922 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG-GAAGTAGATCGA
91349987 AG
130 AG
*
91349989 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTA
* * * *
91350054 TATTGATAGGAAGTGGATCCAAGATACAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGA
66 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG-GAAGTAGATCGA
91350119 AG
130 AG
* * * *
91350121 AAAGCAGATCTTGTATTCGTATATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTA
* * * *
91350186 TATTGATAGGAAGTGGATCCAAGATACAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGA
66 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG-GAAGTAGATCGA
91350251 AG
130 AG
* * * * * *
91350253 AAAGCAGATCTTGTATTCGTATATTGGTGTGAAGTAGATCGAAGATAGCAGATCCTGCCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTA
*
91350318 TATTGGTAGGAAATGGAT
66 TATTGGTAGGAAGTGGAT
91350336 TGAAAAACAG
Statistics
Matches: 1314, Mismatches: 172, Indels: 98
0.83 0.11 0.06
Matches are distributed among these distances:
125 2 0.00
126 14 0.01
127 16 0.01
128 30 0.02
129 8 0.01
130 8 0.01
131 278 0.21
132 597 0.45
133 70 0.05
134 270 0.21
135 15 0.01
136 6 0.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.29
Consensus pattern (131 bp):
AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTA
TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGGAAGTAGATCGAA
G
Found at i:91349469 original size:134 final size:134
Alignment explanation
Indices: 91349214--91349613 Score: 653
Period size: 134 Copynumber: 3.0 Consensus size: 134
91349204 CTTATCTTCA
*
91349214 TGTA-TTGGC-GT-GAAGTAGATCGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
1 TGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
91349276 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
65 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
91349341 CTCCC
130 CTCCC
*
91349346 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCTTGTATTTGGCAGCGAAGCA
1 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
91349411 GATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATC
66 GATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATC
91349476 TCCC
131 TCCC
*
91349480 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCA
1 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
* ** * * ** * **
91349545 GGTTGAAGACGGCGGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGATAGTTCTATC
66 GATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATC
91349610 TCCC
131 TCCC
91349614 GGGGCAAGAA
Statistics
Matches: 251, Mismatches: 14, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
132 4 0.02
133 5 0.02
134 239 0.95
135 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (134 bp):
TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
GATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATC
TCCC
Found at i:91349537 original size:46 final size:46
Alignment explanation
Indices: 91349341--91349537 Score: 145
Period size: 46 Copynumber: 4.4 Consensus size: 46
91349331 ATAACTCTAT
*
91349341 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
* * * * ** * *
91349387 CTTCTTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTAC
*** * * ** * * *
91349433 CTCCCTG-A--CCACAGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TAC
*
91349475 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
*
91349521 CTTCCTGTATTTGGCAG
1 CTCCCTGTATTTGGCAG
91349538 CAAAGCAGGT
Statistics
Matches: 105, Mismatches: 38, Indels: 16
0.66 0.24 0.10
Matches are distributed among these distances:
41 3 0.03
42 10 0.10
43 10 0.10
44 2 0.02
45 20 0.19
46 56 0.53
47 4 0.04
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
Found at i:91350448 original size:95 final size:96
Alignment explanation
Indices: 91350349--91350578 Score: 399
Period size: 97 Copynumber: 2.4 Consensus size: 96
91350339 AAAACAGATC
*
91350349 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGTAGATTTTACCTCC-CTG
1 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCACTG
*
91350413 ATTACAGTGGAGTACATTGAAGCCGATAACT
66 ACTACAGTGGAGTACATTGAAGCCGATAACT
* *
91350444 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCATGT
1 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCA-CT
91350509 GACTACAGTGGAGTACATTGAAGCCGATAACT
65 GACTACAGTGGAGTACATTGAAGCCGATAACT
*
91350541 CTATCTCCCTGTATTTGGCAGTGGAATAGATTAAAGAT
1 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
91350579 TACAGATCTT
Statistics
Matches: 128, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
95 59 0.46
97 69 0.54
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (96 bp):
CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCACTG
ACTACAGTGGAGTACATTGAAGCCGATAACT
Found at i:91350468 original size:45 final size:45
Alignment explanation
Indices: 91350417--91350565 Score: 122
Period size: 45 Copynumber: 3.2 Consensus size: 45
91350407 TCCCTGATTA
91350417 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
1 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
* * * * * * * * *
91350462 CAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCATGTGA-CT-A
1 CAGTGGAGTACATTGAAG--C--CGAT---A-ACTCTATCTCCCTGT-ATTTGG
91350514 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
1 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
91350559 CAGTGGA
1 CAGTGGA
91350566 ATAGATTAAA
Statistics
Matches: 75, Mismatches: 18, Indels: 22
0.65 0.16 0.19
Matches are distributed among these distances:
43 1 0.01
44 12 0.16
45 24 0.32
47 1 0.01
48 3 0.04
49 3 0.04
50 1 0.01
52 17 0.23
53 12 0.16
54 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (45 bp):
CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
Found at i:91357272 original size:32 final size:32
Alignment explanation
Indices: 91357203--91357280 Score: 81
Period size: 32 Copynumber: 2.5 Consensus size: 32
91357193 CATATATTAG
*
91357203 AAATAC-TAAAATATATATATATATTAATAAT
1 AAATACATAAAATATACATATATATTAATAAT
** *
91357234 -GCTACATAAATATGTACATATATATTAA-AAT
1 AAATACATAAA-ATATACATATATATTAATAAT
91357265 AAATACATAATAATAT
1 AAATACATAA-AATAT
91357281 TGAAAGTATG
Statistics
Matches: 36, Mismatches: 7, Indels: 7
0.72 0.14 0.14
Matches are distributed among these distances:
30 3 0.08
31 7 0.19
32 25 0.69
33 1 0.03
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.36
Consensus pattern (32 bp):
AAATACATAAAATATACATATATATTAATAAT
Found at i:91357295 original size:23 final size:22
Alignment explanation
Indices: 91357241--91357456 Score: 93
Period size: 23 Copynumber: 9.3 Consensus size: 22
91357231 AATGCTACAT
*
91357241 AAATATGTACAT-AT-ATATTA
1 AAATATATACATAATAATATTA
*
91357261 AAATAAATACATAATAATATTGA
1 AAATATATACATAATAATATT-A
* * * *
91357284 AAGTATGTACATAATAGTGTTAA
1 AAATATATACATAATAATATT-A
91357307 AAATATATACATAATATAGCTATTA
1 AAATATATACATAATA-A--TATTA
* *
91357332 AAATATATATATACGTACGATGACATGTA
1 AAATATATACATA-ATA--AT---AT-TA
* * *
91357361 AAAAATGTA-AT-ATAGTATTA
1 AAATATATACATAATAATATTA
* *
91357381 GAAATATATACCTGAAATAATATAAA
1 -AAATATATACAT--AATAATAT-TA
91357407 AAATATATA-ACTAATAATATTTA
1 AAATATATACA-TAATAATA-TTA
* *
91357430 AAAAATATACATAAT-ATATAA
1 AAATATATACATAATAATATTA
91357451 AAATAT
1 AAATAT
91357457 GATATTAAAA
Statistics
Matches: 146, Mismatches: 29, Indels: 41
0.68 0.13 0.19
Matches are distributed among these distances:
20 12 0.08
21 18 0.12
22 9 0.06
23 52 0.36
24 3 0.02
25 30 0.21
26 8 0.05
27 1 0.01
28 4 0.03
29 9 0.06
ACGTcount: A:0.54, C:0.06, G:0.07, T:0.33
Consensus pattern (22 bp):
AAATATATACATAATAATATTA
Found at i:91357410 original size:25 final size:24
Alignment explanation
Indices: 91357382--91357438 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
91357372 ATAGTATTAG
*
91357382 AAATATATACCTGAAATAATA-TAAA
1 AAATATATAACT--AATAATATTAAA
91357407 AAATATATAACTAATAATATTTAAA
1 AAATATATAACTAATAATA-TTAAA
91357432 AAATATA
1 AAATATA
91357439 CATAATATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 7 0.24
25 22 0.76
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (24 bp):
AAATATATAACTAATAATATTAAA
Found at i:91357416 original size:11 final size:11
Alignment explanation
Indices: 91357395--91357494 Score: 51
Period size: 13 Copynumber: 8.3 Consensus size: 11
91357385 TATATACCTG
91357395 AAATAATATAAA
1 AAAT-ATATAAA
91357407 AAATATATAACTA
1 AAATATATAA--A
*
91357420 ATAATAT-TTAA
1 A-AATATATAAA
*
91357431 AAA-ATATACA
1 AAATATATAAA
*
91357441 TAATATATAAA
1 AAATATATAAA
91357452 AATATGATATTAAA
1 AA-AT-ATA-TAAA
91357466 AACATATATACATA
1 AA-ATATATA-A-A
*
91357480 ACATATATGAAA
1 AAATATAT-AAA
91357492 AAA
1 AAA
91357495 AAAATAGTAT
Statistics
Matches: 68, Mismatches: 9, Indels: 22
0.69 0.09 0.22
Matches are distributed among these distances:
9 2 0.03
10 6 0.09
11 15 0.22
12 11 0.16
13 18 0.26
14 16 0.24
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.30
Consensus pattern (11 bp):
AAATATATAAA
Found at i:91357606 original size:21 final size:21
Alignment explanation
Indices: 91357577--91357622 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
91357567 TAATACTACC
* * *
91357577 TAAATATATACGTATATATAT
1 TAAAGATATACGCATATATAA
*
91357598 TAAAGATATATGCATATATAA
1 TAAAGATATACGCATATATAA
91357619 TAAA
1 TAAA
91357623 ACATATACTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.04, G:0.07, T:0.37
Consensus pattern (21 bp):
TAAAGATATACGCATATATAA
Found at i:91359679 original size:88 final size:87
Alignment explanation
Indices: 91359470--91359680 Score: 248
Period size: 88 Copynumber: 2.4 Consensus size: 87
91359460 GTAATCCTGA
* * * *
91359470 GCTCAACTCATTTCTCGCAATATGAGTTGACTCTTTAAAAATAGACATTAAAAACAGAAATTGAA
1 GCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTAAAAACAGAAATTAAAAACAGAAATTGAA
* *
91359535 AATAGCTCAGCACATGAGCCAAG
65 AATACCTCAGCACATGACCCAAG
* * * * **
91359558 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAACA-AAATTTGAAAAATAGATTTTGA
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAACAGAAA-TT-AAAAACAGAAATTGA
91359622 AAATACCTC-G-ACATGTTACCCAAG
64 AAATACCTCAGCACATG--ACCCAAG
91359646 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
91359681 TTTGAAAAAC
Statistics
Matches: 105, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
86 7 0.07
87 12 0.11
88 86 0.82
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (87 bp):
GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAACAGAAATTAAAAACAGAAATTGAAA
ATACCTCAGCACATGACCCAAG
Found at i:91359811 original size:73 final size:73
Alignment explanation
Indices: 91359646--91360065 Score: 359
Period size: 73 Copynumber: 5.5 Consensus size: 73
91359636 GTTACCCAAG
* *
91359646 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAAAAACATAAATTAAAGTAATACCTC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTG--AAACATAAATTGAA--AATACCTC
*** *
91359711 AGTGTATGATCTGAA
59 AGTACGTGATTTGAA
*
91359726 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-AAATCATAAATTGAAAATACCTCAGTGCG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-CATAAATTGAAAATACCTCAGTACG
91359790 TGATTTGAA
65 TGATTTGAA
* * * *
91359799 GCTCAACTCACCTCTCCCAATATGAGTTGATTTTTGAAACAAAAATTGAAAA-ACAGAATTTGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAAATAC-----CT--C
* * *
91359863 AATACCTCGGCATTCTGAG
59 AGTACGT--G-ATT-TGAA
* * * *
91359882 GTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACATTAATTGAGAATACATCAGT--G
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAACATAAATTGAAAATACCTCAGTACG
* *
91359945 TGACTTGAG
65 TGATTTGAA
*
91359954 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGATAGAAATTGAAAATACCTCA--AC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAT--AAATTGAAAATACCTCAGTAC
91360017 GTG-TCTTGAA
64 GTGAT-TTGAA
* * * *
91360027 GATCAACTCAACTCTCGCAATATGAGTTAATTTCTGAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
91360066 ATAGAAATAA
Statistics
Matches: 286, Mismatches: 34, Indels: 47
0.78 0.09 0.13
Matches are distributed among these distances:
71 11 0.04
72 35 0.12
73 124 0.43
74 7 0.02
75 10 0.03
76 1 0.00
77 6 0.02
78 2 0.01
79 4 0.01
80 30 0.10
81 1 0.00
82 3 0.01
83 31 0.11
84 19 0.07
85 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (73 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAAATACCTCAGTACGT
GATTTGAA
Found at i:91360035 original size:228 final size:234
Alignment explanation
Indices: 91359560--91360065 Score: 656
Period size: 228 Copynumber: 2.2 Consensus size: 234
91359550 GAGCCAAGGC
* * *
91359560 TCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAACAAAATTTGAAAAATAGATTTTGAAAA
1 TCAACTCACCTCTCGCAATATGAGTTAATTTTTG-AAACAAAAATTGAAAAACAGAATTTGAAAA
*
91359625 TACCTCGACATGTTACCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAAAAA
65 TACCTCGACA-GTTA-CCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTG-AAAA
*
91359690 CATAAATTAAAGTAATACCTCAGTGTATGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTG
126 CATAAATTAAAGTAATACATCAGTG-ATGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTG
* * *
91359755 ATTTTTAAATCATAAATTGAAAATACCTCAGTGCGTGATTTGAAGC
190 ATTTTTAAATCAGAAATTGAAAATACCTCAG-ACGTGATTTGAAGA
* *
91359801 TCAACTCACCTCTCCCAATATGAGTTGATTTTTGAAACAAAAATTGAAAAACAGAATTTGAAAAT
1 TCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAACAAAAATTGAAAAACAGAATTTGAAAAT
* ** * *
91359866 ACCTCGGCA-TT-CTGAGGTTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAACATTA
66 ACCTCGACAGTTACCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACATAA
* *
91359927 ATT-GAG-AATACATCAGTG-TGA-CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
131 ATTAAAGTAATACATCAGTGATGATC-TGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
91359988 TGAAAGAT-AGAAATTGAAAATACCTCA-ACGTG-TCTTGAAGA
195 T--AA-ATCAGAAATTGAAAATACCTCAGACGTGAT-TTGAAGA
* *
91360029 TCAACTCAACTCTCGCAATATGAGTTAATTTCTGAAA
1 TCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAA
91360066 ATAGAAATAA
Statistics
Matches: 239, Mismatches: 21, Indels: 23
0.84 0.07 0.08
Matches are distributed among these distances:
227 2 0.01
228 84 0.35
230 31 0.13
231 4 0.02
232 10 0.04
234 7 0.03
236 31 0.13
238 2 0.01
240 36 0.15
241 32 0.13
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.32
Consensus pattern (234 bp):
TCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAACAAAAATTGAAAAACAGAATTTGAAAAT
ACCTCGACAGTTACCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACATAA
ATTAAAGTAATACATCAGTGATGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
AAATCAGAAATTGAAAATACCTCAGACGTGATTTGAAGA
Found at i:91372277 original size:20 final size:22
Alignment explanation
Indices: 91372254--91372309 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 22
91372244 AATGCTACAT
91372254 AAATATGTACATAT-ATATT-A
1 AAATATGTACATATAATATTGA
**
91372274 AAATAAATACATAATAATATTGA
1 AAATATGTACAT-ATAATATTGA
*
91372297 AAGTATGTACATA
1 AAATATGTACATA
91372310 ATAGTGTTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
20 10 0.36
21 2 0.07
22 6 0.21
23 10 0.36
ACGTcount: A:0.54, C:0.05, G:0.07, T:0.34
Consensus pattern (22 bp):
AAATATGTACATATAATATTGA
Found at i:91372308 original size:23 final size:22
Alignment explanation
Indices: 91372254--91372321 Score: 68
Period size: 23 Copynumber: 3.1 Consensus size: 22
91372244 AATGCTACAT
91372254 AAATATGTACAT-AT-ATATTA
1 AAATATGTACATAATAATATTA
**
91372274 AAATAAATACATAATAATATTGA
1 AAATATGTACATAATAATATT-A
* * *
91372297 AAGTATGTACATAATAGTGTTA
1 AAATATGTACATAATAATATTA
91372319 AAA
1 AAA
91372322 ATACATACAT
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
20 10 0.27
21 2 0.05
22 8 0.22
23 17 0.46
ACGTcount: A:0.53, C:0.04, G:0.09, T:0.34
Consensus pattern (22 bp):
AAATATGTACATAATAATATTA
Found at i:91372423 original size:25 final size:26
Alignment explanation
Indices: 91372381--91372451 Score: 76
Period size: 25 Copynumber: 2.8 Consensus size: 26
91372371 GTAAAAAATG
* * *
91372381 TAAT-ATAGTATTAGAAATATATACC
1 TAATAATAGTATAAAAAATATATAAC
*
91372406 TGA-AATAGTATAAAAAATATATAAC
1 TAATAATAGTATAAAAAATATATAAC
*
91372431 TAATAATA-TTTAAAAAATATA
1 TAATAATAGTATAAAAAATATA
91372452 CATAATATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
25 34 0.89
26 4 0.11
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (26 bp):
TAATAATAGTATAAAAAATATATAAC
Found at i:91372435 original size:23 final size:23
Alignment explanation
Indices: 91372385--91372466 Score: 62
Period size: 25 Copynumber: 3.5 Consensus size: 23
91372375 AAAATGTAAT
* * *
91372385 ATAGTATTAGAAATATATACCTGAA
1 ATAGTATAAAAAATATATAACT--A
91372410 ATAGTATAAAAAATATATAACTA
1 ATAGTATAAAAAATATATAACTA
* *
91372433 ATAATATTTAAAAA-ATAT-ACATA
1 ATAGTA-TAAAAAATATATAAC-TA
91372456 ATA-TATAAAAA
1 ATAGTATAAAAA
91372467 TATGATATTA
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
21 5 0.10
22 4 0.08
23 15 0.31
24 6 0.12
25 19 0.39
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.32
Consensus pattern (23 bp):
ATAGTATAAAAAATATATAACTA
Found at i:91372628 original size:21 final size:21
Alignment explanation
Indices: 91372599--91372644 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
91372589 TAATACTACC
* * *
91372599 TAAATATATACGTATATATAT
1 TAAAGATATACGCATATATAA
*
91372620 TAAAGATATATGCATATATAA
1 TAAAGATATACGCATATATAA
91372641 TAAA
1 TAAA
91372645 ACATATACTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.04, G:0.07, T:0.37
Consensus pattern (21 bp):
TAAAGATATACGCATATATAA
Found at i:91372735 original size:36 final size:35
Alignment explanation
Indices: 91372657--91372736 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 35
91372647 ATATACTAAT
* *
91372657 AATAATAATAATAATAATATTGAAATAAAAAAGTAA
1 AATAAT-ATAACAATAATATTAAAATAAAAAAGTAA
* *
91372693 ATATAATATAACAATAATATTAAAATAAAGTAATTAA
1 A-ATAATATAACAATAATATTAAAATAAA-AAAGTAA
91372730 AATAATA
1 AATAATA
91372737 CTATATAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
36 27 0.71
37 11 0.29
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (35 bp):
AATAATATAACAATAATATTAAAATAAAAAAGTAA
Found at i:91373456 original size:14 final size:14
Alignment explanation
Indices: 91373437--91373465 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
91373427 AAGGTAAAAA
91373437 TTTTTATTTTTATT
1 TTTTTATTTTTATT
91373451 TTTTTATTTTTATT
1 TTTTTATTTTTATT
91373465 T
1 T
91373466 CCTTTAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (14 bp):
TTTTTATTTTTATT
Found at i:91376551 original size:27 final size:27
Alignment explanation
Indices: 91376520--91376576 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
91376510 AGCATCATGG
91376520 TATTAATTTCCCTTGAATTTGCTTCTT
1 TATTAATTTCCCTTGAATTTGCTTCTT
91376547 TATTAATTTCCCTTGAATTTGCTTCTT
1 TATTAATTTCCCTTGAATTTGCTTCTT
91376574 TAT
1 TAT
91376577 CTTCATCTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.19, C:0.18, G:0.07, T:0.56
Consensus pattern (27 bp):
TATTAATTTCCCTTGAATTTGCTTCTT
Found at i:91387923 original size:10 final size:10
Alignment explanation
Indices: 91387899--91387957 Score: 50
Period size: 10 Copynumber: 6.0 Consensus size: 10
91387889 TTATTTAAGC
*
91387899 TAAAAAATTA
1 TAAAATATTA
91387909 TTAAAATATTA
1 -TAAAATATTA
91387920 TAAAA-ATTA
1 TAAAATATTA
* *
91387929 TAAAAAACTA
1 TAAAATATTA
*
91387939 T-AAATTTTA
1 TAAAATATTA
*
91387948 TTAAATATTA
1 TAAAATATTA
91387958 GAATTTTTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
9 15 0.38
10 16 0.40
11 9 0.22
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (10 bp):
TAAAATATTA
Found at i:91387928 original size:9 final size:9
Alignment explanation
Indices: 91387901--91387934 Score: 50
Period size: 9 Copynumber: 3.6 Consensus size: 9
91387891 ATTTAAGCTA
91387901 AAAAATTATT
1 AAAAATTA-T
91387911 AAAATATTAT
1 AAAA-ATTAT
91387921 AAAAATTAT
1 AAAAATTAT
91387930 AAAAA
1 AAAAA
91387935 ACTATAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 10 0.43
10 9 0.39
11 4 0.17
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
AAAAATTAT
Done.